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2024-05-03 14:51:29

Gene list

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COG category: Replication, recombination and repair
Organism: Listeria innocua Clip11262, Clip11262

Number of genes found: 159

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Listeria innocua Clip11262, Clip11262
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
RecF RecF proteinchromosome CDS4870 1113 + 0.390836
addB chromosome CDS2402319 3474 - 0.341393
codV chromosome CDS1311106 903 + 0.365449
comEA chromosome CDS1522696 603 - 0.343284
comFA chromosome CDS2675915 1320 - 0.371212
dinG chromosome CDS2026589 2787 - 0.372802
dnaA Chromosomal replication initiation protein DnaAchromosome CDS319 1356 + 0.375369
dnaB chromosome replication initiation / membrane attachment protein DnaBchromosome CDS1602904 1377 - 0.376906
dnaC chromosome CDS49394 1353 + 0.419808
dnaD chromosome CDS2022585 720 - 0.366667
dnaE chromosome CDS1617970 3327 - 0.383529
dnaG DNA primasechromosome CDS1493722 1881 - 0.373737
dnaI primosome component (helicase loader) DnaIchromosome CDS1601971 924 - 0.362554
dnaN DNA polymerase III, beta chainchromosome CDS1868 1146 + 0.34904
dnaX chromosome CDS2867906 1740 - 0.420115
gyrA DNA gyrase subunit Achromosome CDS8066 2529 + 0.400949
gyrB DNA gyrase subunit Bchromosome CDS6031 1941 + 0.397218
hup chromosome CDS2062689 276 - 0.376812
int putative integrase [Bacteriophage A118]chromosome CDS2444533 1359 + 0.33039
lin0068 chromosome CDS73144 1053 + 0.415005
lin0071 chromosome CDS76209 1203 - 0.375727
lin0084 chromosome CDS83126 960 + 0.377083
lin0085 putative recombinase [Bacteriophage A118]chromosome CDS84085 816 + 0.386029
lin0086 chromosome CDS84921 912 + 0.381579
lin0088 chromosome CDS86290 813 + 0.373924
lin0097 chromosome CDS90333 480 + 0.4125
lin0101 Protein gp66 [Bacteriophage A118]chromosome CDS91890 435 + 0.354023
lin0104 chromosome CDS93090 543 + 0.401473
lin0108 putative scaffolding protein [Bacteriophage A118]chromosome CDS97933 570 + 0.392982
lin0135 chromosome CDS125683 1032 + 0.337209
lin0186 chromosome CDS176603 369 + 0.403794
lin0195 chromosome CDS184384 2340 + 0.396154
lin0205 chromosome CDS198383 993 + 0.414904
lin0209 chromosome CDS201408 273 + 0.410256
lin0224 chromosome CDS221563 774 + 0.392765
lin0226 chromosome CDS223947 576 + 0.409722
lin0357 chromosome CDS373203 540 + 0.431481
lin0387 chromosome CDS400935 510 + 0.378431
lin0397 chromosome CDS408916 363 + 0.30854
lin0398 chromosome CDS409269 1611 + 0.350714
lin0408 chromosome CDS420093 666 + 0.400901
lin0439 chromosome CDS448625 300 - 0.37
lin0510 chromosome CDS531543 588 + 0.333333
lin0524 chromosome CDS548512 930 + 0.315054
lin0580 chromosome CDS607220 297 - 0.43771
lin0597 chromosome CDS628080 1404 + 0.380342
lin0627 chromosome CDS656278 1152 - 0.363715
lin0662 chromosome CDS692346 630 + 0.361905
lin0664 chromosome CDS694103 282 + 0.329787
lin0717 chromosome CDS741557 282 + 0.340426
lin0772 chromosome CDS793559 1254 - 0.271132
lin0827 chromosome CDS859530 279 + 0.308244
lin0839 chromosome CDS873139 1101 + 0.360581
lin0859 chromosome CDS894912 1551 + 0.430045
lin0928 chromosome CDS959328 624 + 0.371795
lin0995 chromosome CDS1017980 480 + 0.410417
lin1083 chromosome CDS1108735 651 + 0.322581
lin1086 chromosome CDS1110321 1398 + 0.339056
lin1190 chromosome CDS1203555 675 + 0.371852
lin1195 chromosome CDS1207980 2358 + 0.399491
lin1209 chromosome CDS1226361 363 + 0.336088
lin1211 chromosome CDS1226999 1461 + 0.342916
lin1214 chromosome CDS1229882 1413 + 0.354565
lin1215 chromosome CDS1231748 477 + 0.36478
lin1224 chromosome CDS1240343 453 + 0.357616
lin1231 chromosome CDS1246563 1416 - 0.310028
lin1241 chromosome CDS1252093 1941 + 0.335909
lin1244 chromosome CDS1255528 918 + 0.345316
lin1245 chromosome CDS1256321 864 + 0.350694
lin1248 chromosome CDS1257766 438 + 0.369863
lin1254 chromosome CDS1261428 945 + 0.366138
lin1313 chromosome CDS1306246 861 + 0.373984
lin1348 chromosome CDS1344497 1200 - 0.323333
lin1398 chromosome CDS1391149 1353 + 0.383592
lin1399 chromosome CDS1392491 228 + 0.377193
lin1487 chromosome CDS1488218 894 - 0.380313
lin1488 chromosome CDS1489127 1308 - 0.360092
lin1497 chromosome CDS1500339 768 - 0.348958
lin1516 chromosome CDS1518708 1032 - 0.337209
lin1537 chromosome CDS1536181 417 - 0.405276
lin1544 chromosome CDS1544432 2397 - 0.390488
lin1549 chromosome CDS1551057 1284 - 0.384735
lin1560 chromosome CDS1563536 2352 - 0.385629
lin1584 chromosome CDS1587714 675 - 0.352593
lin1617 chromosome CDS1628779 999 - 0.372372
lin1623 chromosome CDS1633423 906 + 0.456954
lin1624 chromosome CDS1634365 720 + 0.472222
lin1662 chromosome CDS1672237 414 - 0.364734
lin1680 chromosome CDS1691808 582 - 0.398625
lin1685 chromosome CDS1696845 3219 - 0.361603
lin1687 chromosome CDS1703215 1125 - 0.387556
lin1737 chromosome CDS1740897 1338 - 0.356502
lin1743 chromosome CDS1746435 945 - 0.366138
lin1749 chromosome CDS1750604 438 - 0.369863
lin1752 chromosome CDS1751623 864 - 0.350694
lin1753 chromosome CDS1752362 918 - 0.345316
lin1756 chromosome CDS1754774 1983 - 0.334846
lin1758 chromosome CDS1757060 228 - 0.29386
lin1765 chromosome CDS1760914 1176 + 0.322279
lin1777 chromosome CDS1774244 474 - 0.383966
lin1797 chromosome CDS1804454 1098 - 0.373406
lin1813 chromosome CDS1817978 1863 - 0.323135
lin1833 chromosome CDS1838943 1329 - 0.373213
lin1870 chromosome CDS1882432 2016 - 0.382937
lin1894 chromosome CDS1912366 756 + 0.371693
lin1925 chromosome CDS1939235 2049 - 0.400195
lin1993 chromosome CDS2008260 402 + 0.395522
lin1994 chromosome CDS2008679 873 - 0.391753
lin2000 chromosome CDS2014915 1149 - 0.419495
lin2069 chromosome CDS2084084 894 - 0.388143
lin2079 chromosome CDS2093788 558 - 0.387097
lin2082 chromosome CDS2096496 1071 - 0.395892
lin2156 chromosome CDS2180700 2241 + 0.394021
lin2159 chromosome CDS2184529 558 - 0.385305
lin2325 chromosome CDS2357449 1236 - 0.375405
lin2344 chromosome CDS2379374 483 - 0.36646
lin2348 chromosome CDS2381854 657 - 0.383562
lin2368 chromosome CDS2398610 3708 - 0.335761
lin2402 chromosome CDS2431065 483 - 0.42029
lin2409 chromosome CDS2433733 945 - 0.368254
lin2412 chromosome CDS2435694 933 - 0.353698
lin2413 chromosome CDS2436646 816 - 0.382353
lin2414 gp47 [Bacteriophage A118]chromosome CDS2437461 960 - 0.376042
lin2589 chromosome CDS2612970 1257 - 0.356404
lin2591 chromosome CDS2614992 480 - 0.308333
lin2601 chromosome CDS2619376 945 - 0.371429
lin2610 chromosome CDS2624653 1155 + 0.307359
lin2667 chromosome CDS2686080 366 - 0.34153
lin2735 chromosome CDS2756539 648 - 0.287037
lin2743 chromosome CDS2770410 297 - 0.333333
lin2823 chromosome CDS2837366 1257 + 0.420843
lin2883 chromosome CDS2897161 291 - 0.350515
lin2900 chromosome CDS2917032 1773 - 0.390299
lin2989 hypothetical proteinchromosome CDS3010550 471 - 0.307856
mfd transcription-repair coupling factorchromosome CDS240860 3540 + 0.39322
mutL DNA mismatch repair proteinchromosome CDS1439760 1812 + 0.368102
mutM chromosome CDS1605447 822 - 0.392944
mutS DNA mismatch repair (recognition)chromosome CDS1437158 2583 + 0.372822
nth probable endonuclease III (DNA repair)chromosome CDS2021915 660 - 0.377273
parC chromosome CDS1319870 2457 + 0.376882
parE chromosome CDS1317906 1968 + 0.409553
pcrA ATP-dependent DNA helicasechromosome CDS1884471 2196 - 0.387523
polA DNA polymerase Ichromosome CDS1606292 2628 - 0.36796
polC chromosome CDS1353726 4335 + 0.391465
priA chromosome CDS1952935 2394 - 0.393066
recA Recombination protein recAchromosome CDS1432339 1047 + 0.393505
recN DNA repair and genetic recombinationchromosome CDS1397570 1692 + 0.376478
recR chromosome CDS2866853 597 - 0.420436
recS chromosome CDS2071244 1404 - 0.349715
rnhB chromosome CDS1305326 786 + 0.382952
rnhC chromosome CDS1204267 927 - 0.390507
ruvA chromosome CDS1572888 606 - 0.363036
ruvB chromosome CDS1571865 1008 - 0.426587
sbcC chromosome CDS1700147 3072 - 0.364258
ssb chromosome CDS42038 540 + 0.414815
topA chromosome CDS1307376 2079 + 0.368927
uvrA excinuclease ABC (subunit A)chromosome CDS2647067 2871 - 0.393939
uvrB excinuclease ABC (subunit B)chromosome CDS2649945 1977 - 0.383915
uvrC chromosome CDS1210805 1812 + 0.406733