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2024-05-18 06:28:38

Gene list

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COG category: Replication, recombination and repair
Organism: Listeria monocytogenes EGD-e, EGD-e

Number of genes found: 131

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Listeria monocytogenes EGD-e, EGD-e
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
RecF RecF proteinRecName: Full=DNA replication and repair protein RecF; chromosome CDS4869 1113 + 0.397125
addB RecName: Full=ATP-dependent helicase/deoxyribonuclease subunit B; EC=3.1.-.-; EC=3.6.4.12; AltName: Full=ATP-dependent helicase/nuclease AddB; chromosome CDS2356325 3474 - 0.350892
codV RecName: Full=Tyrosine recombinase XerC; chromosome CDS1301551 903 + 0.3732
comEA SubName: Full=ComEA protein; chromosome CDS1518245 603 - 0.3466
comFA SubName: Full=ComFA protein; chromosome CDS2591451 1320 - 0.387121
dinG SubName: Full=DinG protein; chromosome CDS1972176 2787 - 0.37962
dnaA Chromosomal replication initiation protein DnaARecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS318 1356 + 0.369469
dnaB chromosome replication initiation / membrane attachment protein DnaBSubName: Full=Chromosome replication initiation / membrane attachment protein DnaB; chromosome CDS1598432 1377 - 0.376906
dnaC SubName: Full=DnaC protein; chromosome CDS57286 1353 + 0.427938
dnaD SubName: Full=DnaD protein; chromosome CDS1968169 720 - 0.379167
dnaE SubName: Full=DnaE protein; chromosome CDS1613497 3327 - 0.393147
dnaG DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS1487699 1881 - 0.374269
dnaI primosome component (helicase loader) DnaISubName: Full=Primosome component (Helicase loader) DnaI; chromosome CDS1597499 924 - 0.383117
dnaN DNA polymerase III, beta chainRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS1867 1146 + 0.343805
dnaX SubName: Full=DnaX protein; chromosome CDS2777844 1740 - 0.421264
gyrA DNA gyrase subunit ARecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS8065 2529 + 0.398972
gyrB DNA gyrase subunit BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS6030 1941 + 0.40237
hup SubName: Full=Hup protein; chromosome CDS2008319 276 - 0.376812
int putative integrase [Bacteriophage A118]SubName: Full=Putative integrase [Bacteriophage A118]; chromosome CDS2401008 1359 + 0.336277
lmo0076 SubName: Full=Lmo0076 protein; chromosome CDS79817 1053 + 0.413105
lmo0081 SubName: Full=Lmo0081 protein; chromosome CDS85025 603 + 0.28524
lmo0157 SubName: Full=Lmo0157 protein; chromosome CDS153608 2340 + 0.397009
lmo0162 SubName: Full=Lmo0162 protein; chromosome CDS162467 993 + 0.423968
lmo0166 RecName: Full=UPF0213 protein lmo0166; chromosome CDS165492 273 + 0.373626
lmo0185 SubName: Full=Lmo0185 protein; chromosome CDS189625 774 + 0.401809
lmo0187 RecName: Full=Ribonuclease M5; EC=3.1.26.8; AltName: Full=RNase M5; AltName: Full=Ribosomal RNA terminal maturase M5; chromosome CDS192018 576 + 0.409722
lmo0310 SubName: Full=Lmo0310 protein; chromosome CDS335350 1077 + 0.281337
lmo0313 SubName: Full=Lmo0313 protein; chromosome CDS338341 747 + 0.290495
lmo0330 SubName: Full=Lmo0330 protein; chromosome CDS356890 816 + 0.359069
lmo0368 RecName: Full=Uncharacterized Nudix hydrolase lmo0368; EC=3.6.-.-; chromosome CDS395602 510 + 0.394118
lmo0390 RecName: Full=Uracil-DNA glycosylase 1; Short=UDG 1; EC=3.2.2.27; chromosome CDS414095 666 + 0.40991
lmo0418 SubName: Full=Lmo0418 protein; chromosome CDS439677 300 - 0.373333
lmo0438 RecName: Full=Listeria nuclear targeted protein A; Flags: Precursor; chromosome CDS467519 618 + 0.338188
lmo0464 SubName: Full=Lmo0464 protein; chromosome CDS501693 267 + 0.348315
lmo0470 SubName: Full=Lmo0470 protein; chromosome CDS506368 630 + 0.349206
lmo0548 SubName: Full=Lmo0548 protein; chromosome CDS586329 666 + 0.310811
lmo0571 SubName: Full=Lmo0571 protein; chromosome CDS608184 297 - 0.444444
lmo0588 SubName: Full=Lmo0588 protein; chromosome CDS629088 1404 + 0.391026
lmo0618 SubName: Full=Lmo0618 protein; chromosome CDS657323 1143 - 0.370079
lmo0658 RecName: Full=Endonuclease III; EC=4.2.99.18; chromosome CDS698785 636 + 0.378931
lmo0660 SubName: Full=Lmo0660 protein; chromosome CDS700537 285 + 0.336842
lmo0709 SubName: Full=Lmo0709 protein; chromosome CDS742276 282 + 0.340426
lmo0828 SubName: Full=Lmo0828 protein; chromosome CDS854745 837 + 0.358423
lmo0832 SubName: Full=Lmo0832 protein; chromosome CDS863322 285 + 0.270175
lmo0846 SubName: Full=Lmo0846 protein; chromosome CDS884170 1101 + 0.342416
lmo0866 SubName: Full=Lmo0866 protein; chromosome CDS905962 1563 + 0.424824
lmo0928 RecName: Full=Putative 3-methyladenine DNA glycosylase; EC=3.2.2.-; chromosome CDS965513 624 + 0.394231
lmo0996 RecName: Full=Methylated-DNA--protein-cysteine methyltransferase; EC=2.1.1.63; AltName: Full=6-O-methylguanine-DNA methyltransferase; AltName: Full=O-6-methylguanine-DNA-alkyltransferase; chromosome CDS1026376 480 + 0.377083
lmo1097 SubName: Full=Lmo1097 protein; chromosome CDS1131558 1203 - 0.338321
lmo1111 SubName: Full=Lmo1111 protein; chromosome CDS1146228 1185 - 0.394937
lmo1119 SubName: Full=Lmo1119 protein; chromosome CDS1156384 858 - 0.286713
lmo1154 SubName: Full=Lmo1154 protein; chromosome CDS1184142 660 + 0.39697
lmo1227 RecName: Full=Uracil-DNA glycosylase 2; Short=UDG 2; EC=3.2.2.27; chromosome CDS1252667 675 + 0.373333
lmo1232 RecName: Full=Endonuclease MutS2; EC=3.1.-.-; chromosome CDS1257092 2358 + 0.400763
lmo1246 RecName: Full=ATP-dependent RNA helicase DbpA; EC=3.6.4.13; chromosome CDS1270849 1413 + 0.370134
lmo1248 SubName: Full=Lmo1248 protein; chromosome CDS1272717 477 + 0.356394
lmo1256 SubName: Full=Lmo1256 protein; chromosome CDS1281321 453 + 0.346578
lmo1274 SubName: Full=Lmo1274 protein; chromosome CDS1296691 861 + 0.372822
lmo1311 SubName: Full=Lmo1311 protein; chromosome CDS1337742 1206 - 0.31592
lmo1361 RecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS1384362 1353 + 0.3932
lmo1362 RecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS1385704 228 + 0.368421
lmo1423 SubName: Full=Lmo1423 protein; chromosome CDS1454347 831 - 0.323706
lmo1449 RecName: Full=Probable endonuclease 4; EC=3.1.21.2; AltName: Full=Endodeoxyribonuclease IV; AltName: Full=Endonuclease IV; chromosome CDS1481188 894 - 0.392617
lmo1450 SubName: Full=Lmo1450 protein; chromosome CDS1482096 1308 - 0.377676
lmo1460 RecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS1494317 768 - 0.367188
lmo1481 SubName: Full=Lmo1481 protein; chromosome CDS1514257 1032 - 0.333333
lmo1502 RecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS1531716 417 - 0.410072
lmo1509 SubName: Full=Lmo1509 protein; chromosome CDS1539979 2397 - 0.403838
lmo1514 SubName: Full=Lmo1514 protein; chromosome CDS1546608 1278 - 0.406103
lmo1525 SubName: Full=Lmo1525 protein; chromosome CDS1559081 2352 - 0.393282
lmo1549 RecName: Full=UPF0758 protein lmo1549; chromosome CDS1583242 675 - 0.36
lmo1582 SubName: Full=Lmo1582 protein; chromosome CDS1624316 999 - 0.366366
lmo1621 SubName: Full=Lmo1621 protein; chromosome CDS1664057 414 - 0.36715
lmo1639 SubName: Full=Lmo1639 protein; chromosome CDS1683635 582 - 0.37457
lmo1644 SubName: Full=Lmo1644 protein; chromosome CDS1688670 3219 - 0.379932
lmo1645 SubName: Full=Lmo1645 protein; chromosome CDS1691972 3072 - 0.380208
lmo1646 SubName: Full=Lmo1646 protein; chromosome CDS1695040 1125 - 0.400889
lmo1669 SubName: Full=Lmo1669 protein; chromosome CDS1723649 474 - 0.390295
lmo1689 SubName: Full=Lmo1689 protein; chromosome CDS1753845 1098 - 0.380692
lmo1722 SubName: Full=Lmo1722 protein; chromosome CDS1784473 1326 - 0.395928
lmo1758 RecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS1827941 2016 - 0.40129
lmo1782 SubName: Full=Lmo1782 protein; chromosome CDS1857856 756 + 0.37963
lmo1811 SubName: Full=Lmo1811 protein; chromosome CDS1884846 2049 - 0.403123
lmo1880 SubName: Full=Lmo1880 protein; chromosome CDS1953836 402 + 0.39801
lmo1881 SubName: Full=Lmo1881 protein; chromosome CDS1954255 873 - 0.407789
lmo1887 SubName: Full=Lmo1887 protein; chromosome CDS1960496 1149 - 0.416884
lmo1955 RecName: Full=Tyrosine recombinase XerD; chromosome CDS2029698 894 - 0.39038
lmo1965 SubName: Full=Lmo1965 protein; chromosome CDS2039441 558 - 0.370968
lmo1975 RecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; chromosome CDS2047444 1071 - 0.396825
lmo2050 SubName: Full=Lmo2050 protein; chromosome CDS2132412 2241 + 0.402499
lmo2053 SubName: Full=Lmo2053 protein; chromosome CDS2136239 558 - 0.374552
lmo2222 SubName: Full=Lmo2222 protein; chromosome CDS2311461 1236 - 0.375405
lmo2242 SubName: Full=Lmo2242 protein; chromosome CDS2333375 483 - 0.358178
lmo2246 SubName: Full=Lmo2246 protein; chromosome CDS2335862 657 - 0.39726
lmo2267 RecName: Full=ATP-dependent helicase/nuclease subunit A; EC=3.1.-.-; EC=3.6.4.12; AltName: Full=ATP-dependent helicase/nuclease AddA; chromosome CDS2352616 3708 - 0.349515
lmo2301 SubName: Full=Lmo2301 protein; chromosome CDS2385301 795 - 0.357233
lmo2303 Protein gp66 [Bacteriophage A118]SubName: Full=Protein gp66 [Bacteriophage A118]; chromosome CDS2387046 435 - 0.344828
lmo2308 RecName: Full=Single-stranded DNA-binding protein 2; Short=SSB 2; chromosome CDS2388729 483 - 0.387164
lmo2316 SubName: Full=Lmo2316 protein; chromosome CDS2391813 813 - 0.372694
lmo2317 SubName: Full=Lmo2317 protein; chromosome CDS2392622 975 - 0.373333
lmo2319 SubName: Full=Lmo2319 protein; chromosome CDS2394317 477 - 0.362683
lmo2523 RecName: Full=Single-stranded DNA-binding protein; chromosome CDS2601632 366 - 0.333333
lmo2676 SubName: Full=Lmo2676 protein; chromosome CDS2747427 1257 + 0.41607
lmo2757 SubName: Full=Lmo2757 protein; chromosome CDS2836011 1773 - 0.401015
lmo2803 SubName: Full=Lmo2803 protein; chromosome CDS2888639 363 - 0.347107
lmo2857 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2943871 471 - 0.295117
mfd transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS217800 3540 + 0.405932
mutL DNA mismatch repair proteinRecName: Full=DNA mismatch repair protein MutL; chromosome CDS1432839 1806 + 0.383167
mutM RecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase MutM; Short=AP lyase MutM; EC=4.2.99.18; chromosome CDS1600975 822 - 0.396594
mutS DNA mismatch repair (recognition)RecName: Full=DNA mismatch repair protein MutS; chromosome CDS1430237 2583 + 0.390244
nth probable endonuclease III (DNA repair)RecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS1967499 660 - 0.386364
parC RecName: Full=DNA topoisomerase 4 subunit A; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit A; chromosome CDS1310315 2460 + 0.380488
parE RecName: Full=DNA topoisomerase 4 subunit B; EC=5.99.1.3; AltName: Full=Topoisomerase IV subunit B; chromosome CDS1308351 1968 + 0.424289
pcrA ATP-dependent DNA helicaseSubName: Full=ATP-dependent DNA helicase; chromosome CDS1829982 2196 - 0.39071
polA DNA polymerase IRecName: Full=DNA polymerase; EC=2.7.7.7; chromosome CDS1601820 2628 - 0.375951
polC RecName: Full=DNA polymerase III PolC-type; Short=PolIII; EC=2.7.7.7; chromosome CDS1346951 4335 + 0.387313
priA SubName: Full=PriA protein; chromosome CDS1898529 2394 - 0.414787
recA Recombination protein recARecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS1425419 1047 + 0.39255
recN DNA repair and genetic recombinationRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS1390694 1692 + 0.378842
recR RecName: Full=Recombination protein RecR; chromosome CDS2776792 597 - 0.390285
recS SubName: Full=RecS protein; chromosome CDS2016858 1404 - 0.368946
rnhB RecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS1295772 786 + 0.362595
rnhC RecName: Full=Ribonuclease HIII; Short=RNase HIII; EC=3.1.26.4; chromosome CDS1253379 927 - 0.400216
ruvA RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS1568420 606 - 0.387789
ruvB RecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS1567397 1008 - 0.409722
ssb RecName: Full=Single-stranded DNA-binding protein 1; Short=SSB 1; chromosome CDS49934 537 + 0.411546
topA RecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS1297823 2079 + 0.377104
topB RecName: Full=DNA topoisomerase 3; EC=5.99.1.2; AltName: Full=DNA topoisomerase III; chromosome CDS2833834 2154 - 0.405757
uvrA excinuclease ABC (subunit A)RecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS2562591 2871 - 0.38767
uvrB excinuclease ABC (subunit B)RecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS2565469 1977 - 0.399595
uvrC RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS1259917 1812 + 0.396247