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2024-05-06 07:11:23

Gene list

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COG category: Replication, recombination and repair
Organism: Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18

Number of genes found: 253

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Salmonella enterica subsp. enterica serovar Typhi str. CT18, CT18
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
HCM1.103 putative DNA helicasepHCM1 CDS78416 2040 + 0.504902
HCM1.134c putative recombinasepHCM1 CDS104515 1182 - 0.50423
HCM1.162c putative transposasepHCM1 CDS119023 765 - 0.610458
HCM1.187c putative DNA modification methylasepHCM1 CDS137517 1428 - 0.489496
HCM1.188 putative nucleasepHCM1 CDS139168 516 + 0.484496
HCM1.194 transposasepHCM1 CDS143085 1209 + 0.450786
HCM1.201 putative transposasepHCM1 CDS151052 1398 + 0.528612
HCM1.209c putative transposasepHCM1 CDS156075 1005 - 0.481592
HCM1.213c putative transposasepHCM1 CDS160707 705 - 0.530496
HCM1.219 putative transposasepHCM1 CDS163369 705 + 0.531915
HCM1.236 putative transposasepHCM1 CDS175403 1005 + 0.490547
HCM1.249c transposasepHCM1 CDS183230 1209 - 0.450786
HCM1.57c hypothetical proteinpHCM1 CDS34194 1755 - 0.501994
HCM1.59 putative DNA modification methylasepHCM1 CDS37651 825 + 0.476364
HCM2.0008c putative recombinasepHCM2 CDS2785 1077 - 0.552461
HCM2.0010c putative exonucleasepHCM2 CDS4130 945 - 0.529101
HCM2.0012 hypothetical proteinpHCM2 CDS6283 432 - 0.525463
HCM2.0015c putative DNA polymerase III alpha subunitpHCM2 CDS8084 3519 - 0.547883
HCM2.0020c hypothetical proteinpHCM2 CDS16239 891 - 0.50954
HCM2.0040c hypothetical proteinpHCM2 CDS28542 1212 - 0.519802
HCM2.0041c putative DNA helicasepHCM2 CDS29816 1341 - 0.548844
HCM2.0047 hypothetical proteinpHCM2 CDS35508 552 + 0.463768
HCM2.0062c hypothetical proteinpHCM2 CDS53759 474 - 0.552743
HCM2.0078 putative helicasepHCM2 CDS65984 1560 + 0.514744
HCM2.0109c putative ribonuclease HpHCM2 CDS85641 609 - 0.54023
HCM2.0114c hypothetical proteinpHCM2 CDS89018 558 - 0.544803
HCM2.0125c hypothetical proteinpHCM2 CDS98804 1917 - 0.53782
HCM2.0127c hypothetical proteinpHCM2 CDS100950 1086 - 0.544199
STY0111 probable ATP-dependent helicase HepAchromosome CDS109800 2907 - 0.570347
STY0112 DNA polymerase IIchromosome CDS112880 2352 - 0.565901
STY0114 putative IS element transposasechromosome CDS115571 441 - 0.460317
STY0115 putative IS element transposasechromosome CDS116031 1209 + 0.489661
STY0157 7,8-dihydro-8-oxoguanine-triphosphatasechromosome CDS162968 396 + 0.520202
STY0214 ATP-dependent helicase HrpBchromosome CDS222750 2442 + 0.595823
STY0253 ribonuclease HIIchromosome CDS265810 597 + 0.561139
STY0254 DNA polymerase III, alpha chainchromosome CDS266430 3483 + 0.558714
STY0284 ribonuclease Hchromosome CDS300696 468 - 0.502137
STY0285 DNA polymerase III epsilon subunitchromosome CDS301227 732 + 0.516393
STY0358 hypothetical protein DinP (DNA damage-inducible protein)chromosome CDS367097 1056 + 0.514205
STY0429 exonuclease SbcCchromosome CDS437771 3105 - 0.585185
STY0430 exonuclease SbcDchromosome CDS440872 1203 - 0.558603
STY0463 exodeoxyribonuclease small subunitchromosome CDS469625 243 - 0.54321
STY0478 hypothetical proteinchromosome CDS483689 285 + 0.410526
STY0493 DNA-binding protein HU-betachromosome CDS500253 273 + 0.494505
STY0528 DNA polymerase III subunits gamma and tauchromosome CDS533757 1929 + 0.589425
STY0530 recombination protein RecRchromosome CDS536060 606 + 0.613861
STY0697 DNA polymerase III, delta subunitchromosome CDS692238 1032 - 0.575581
STY0735 seqA proteinchromosome CDS735177 543 + 0.510129
STY0749 deoxyribodipyrimidine photolyasechromosome CDS750319 1422 + 0.567511
STY0756 probable DNA recombinasechromosome CDS757169 567 + 0.506173
STY0771 endonuclease VIII, DNA N-glycosylase with an AP lyase activitychromosome CDS768705 792 + 0.52399
STY0831 excision nuclease ABC subunit Bchromosome CDS829029 2022 + 0.553907
STY0855 putative ATP-dependent RNA helicase rhlEchromosome CDS849385 1368 + 0.584795
STY0935 conserved hypothetical proteinchromosome CDS927559 1659 + 0.556962
STY0946 probable integrase remnantchromosome CDS937244 378 - 0.460317
STY0960 conserevd hypothetical proteinchromosome CDS952706 1344 + 0.568452
STY0982 integration host factor beta-subunit (IHF-beta)chromosome CDS978131 285 + 0.501754
STY1014 putative DNA methylasechromosome CDS1010618 882 - 0.530612
STY1023 putative DNA replication proteinchromosome CDS1017163 750 + 0.529333
STY1045 putative bacteriophage proteinchromosome CDS1028101 261 + 0.421456
STY1075 putative DNA invertase (fragment)chromosome CDS1051126 141 + 0.652482
STY1097 helicase IV (75 kD helicase)chromosome CDS1075470 2055 + 0.549392
STY1240 DNA polymerase III, delta' subunitchromosome CDS1193926 1005 + 0.58607
STY1241 conserved hypothetical proteinchromosome CDS1194941 798 + 0.530075
STY1256 transcription-repair coupling factor (TrcF)chromosome CDS1208383 3447 - 0.56832
STY1275 putative mutT family proteinchromosome CDS1232234 462 - 0.521645
STY1336 DNA topoisomerase I, omega protein Ichromosome CDS1293319 2598 + 0.54157
STY1358 integrase (fragment)chromosome CDS1319577 345 + 0.44058
STY1366 DNA-invertase (fragment)chromosome CDS1322944 282 + 0.553191
STY1379 transposase for insertion sequence element IS200chromosome CDS1333722 459 - 0.457516
STY1405 O6-methylguanine-DNA-alkyltransferasechromosome CDS1356335 516 - 0.552326
STY1428 ATP-dependent helicase HrpAchromosome CDS1378457 3903 + 0.536767
STY1499 hypothetical proteinchromosome CDS1456097 705 - 0.4
STY1604 hypothetical proteinchromosome CDS1544282 1770 - 0.585311
STY1643 DNA-invertasechromosome CDS1572347 573 + 0.450262
STY1669 endonuclease IIIchromosome CDS1597769 636 + 0.522013
STY1688 ribonuclease Tchromosome CDS1614382 648 + 0.529321
STY1771 integration host factor alpha-subunitchromosome CDS1693319 300 - 0.483333
STY1804 conserved hypothetical proteinchromosome CDS1723228 909 + 0.546755
STY1812 exodeoxyribonuclease IIIchromosome CDS1731505 807 + 0.521685
STY1813 putative MutT-family proteinchromosome CDS1732384 417 + 0.570743
STY1816 DNA topoisomerase IIIchromosome CDS1734647 1950 - 0.56
STY1951 putative ATP-dependent helicasechromosome CDS1840118 1911 - 0.561486
STY1955 conserved hypothetical proteinchromosome CDS1844138 579 + 0.588946
STY2056 putative transposasechromosome CDS1917993 1209 - 0.450786
STY2062 putative DNA replication proteinchromosome CDS1922526 747 - 0.534137
STY2077 putative integrasechromosome CDS1932482 1077 + 0.42247
STY2084 exodeoxyribonuclease Xchromosome CDS1936709 699 + 0.519313
STY2102 Holliday junction DNA helicasechromosome CDS1954694 1011 - 0.569733
STY2106 crossover junction endodeoxyribonucleasechromosome CDS1958187 522 - 0.55364
STY2108 DATP pyrophosphohydrolasechromosome CDS1959515 453 - 0.529801
STY2154 excinuclease ABC subunit Cchromosome CDS2000644 1833 - 0.534643
STY2199 patch repair proteinchromosome CDS2037487 471 - 0.56051
STY2200 DNA-cytosine methyltransferasechromosome CDS2037938 1431 - 0.540881
STY2205 UmuC proteinchromosome CDS2043481 1269 - 0.544523
STY2266 putative DNA gyrase inhibitory proteinchromosome CDS2092179 468 - 0.508547
STY2276 exodeoxyribonuclease Ichromosome CDS2101051 1431 + 0.539483
STY2319 putative O-antigen biosynthesis proteinchromosome CDS2149116 480 - 0.602083
STY2337 DNA-3-methyladenine glycosidase IIchromosome CDS2169451 870 - 0.612644
STY2420 insertion element IS1 protein InsAchromosome CDS2249889 276 - 0.536232
STY2438 endonuclease IVchromosome CDS2269017 858 + 0.536131
STY2460 putative helicasechromosome CDS2290935 1761 + 0.569563
STY2490 AlkB proteinchromosome CDS2319432 651 - 0.591398
STY2491 ADA regulatory proteinchromosome CDS2320085 1062 - 0.608286
STY2499 DNA gyrase subunit Achromosome CDS2331373 2637 - 0.555556
STY2525 conserved hypothetical proteinchromosome CDS2360194 426 + 0.495305
STY2576 conserved hypothetical proteinchromosome CDS2413430 555 - 0.544144
STY2663 DNA ligasechromosome CDS2499609 2016 - 0.571925
STY2714 conserved hypothetical proteinchromosome CDS2547296 576 - 0.487847
STY2737 conserved hypothetical proteinchromosome CDS2573576 726 - 0.53719
STY2753 exodeoxyribonuclease large subunitchromosome CDS2590945 1350 + 0.582963
STY2825 DNA repair protein RecOchromosome CDS2687272 729 - 0.554184
STY2836 ATP-dependent RNA helicase SrmBchromosome CDS2698505 1335 + 0.548315
STY2840 uracil-DNA glycosylasechromosome CDS2702208 690 + 0.553623
STY2870 DNA repair proteinchromosome CDS2739173 1662 + 0.54633
STY2879 putative reverse transcriptasechromosome CDS2759733 774 - 0.405685
STY2889 putative DNA-invertasechromosome CDS2768199 573 - 0.509599
STY2950 RecA proteinchromosome CDS2827753 1062 - 0.544256
STY3033 DNA mismatch repair proteinchromosome CDS2900744 2568 + 0.569704
STY3065 conserved hypothetical proteinchromosome CDS2926948 918 - 0.529412
STY3111 5'-3' exonucleasechromosome CDS2979135 816 + 0.556373
STY3137 prepilin peptidase dependent protein B precursorchromosome CDS3012345 564 - 0.535461
STY3145 conserved hypothetical proteinchromosome CDS3018413 531 - 0.506591
STY3148 DNA mismatch repair proteinchromosome CDS3019626 696 + 0.579023
STY3193 possible integrasechromosome CDS3058163 1647 - 0.500911
STY3198 single-stranded DNA-specific exonucleasechromosome CDS3064471 1734 - 0.572664
STY3200 site-specific integrase/recombinasechromosome CDS3066947 897 - 0.530658
STY3246 endonuclease Ichromosome CDS3111090 708 + 0.560734
STY3250 conserved hypothetical proteinchromosome CDS3114351 417 + 0.551559
STY3265 A/G-specific adenine glycosylasechromosome CDS3125080 1053 + 0.548908
STY3351 topoisomerase IV subunit Achromosome CDS3194450 2259 - 0.55954
STY3359 topoisomerase IV subunit Bchromosome CDS3201464 1893 - 0.555732
STY3363 conserved hypothetical proteinchromosome CDS3205236 633 - 0.530806
STY3389 DNA primasechromosome CDS3232006 1746 + 0.517182
STY3454 conserved hypothetical proteinchromosome CDS3295898 318 + 0.553459
STY3461 ATP-dependent RNA helicase (dead-box protein)chromosome CDS3301996 1941 - 0.573931
STY3565 Fis DNA-binding proteinchromosome CDS3409864 297 + 0.464646
STY3566 putative adenine-specific DNA-modification methylasechromosome CDS3410246 885 + 0.456497
STY3608 DNA helicase IIchromosome CDS3461790 2163 - 0.577439
STY3610 integrase/recombinasechromosome CDS3464804 903 - 0.566999
STY3642 ATP-dependent DNA helicasechromosome CDS3499842 2025 - 0.528395
STY3658 probable bacteriophage integrasechromosome CDS3515470 1053 - 0.48433
STY3667 DNA adenine methylasechromosome CDS3519664 858 + 0.463869
STY3695 DNA-invertasechromosome CDS3541120 567 + 0.511464
STY3715 histone like DNA-binding protein HU-alpha (NS2) (HU-2)chromosome CDS3565553 273 - 0.47619
STY3719 conserved hypothetical proteinchromosome CDS3568430 774 - 0.555556
STY3775 primosomal protein replication factorchromosome CDS3639854 2199 + 0.593452
STY3881 DNA polymerase Ichromosome CDS3736421 2787 - 0.53929
STY3940 chromosomal replication initiator proteinchromosome CDS3805127 1401 + 0.529622
STY3941 DNA polymerase III beta-subunitchromosome CDS3806532 1101 + 0.563124
STY3942 recF proteinchromosome CDS3807830 1074 + 0.546555
STY3943 DNA gyrase subunit Bchromosome CDS3808932 2415 + 0.556522
STY4048 ATP-dependent DNA helicasechromosome CDS3909336 2082 - 0.582133
STY4068 formamidopyrimidine-DNA glycosylasechromosome CDS3926357 810 + 0.546914
STY4107 conserved hypothetical proteinchromosome CDS3968090 363 - 0.506887
STY4124 insertion element IS1 protein InsAchromosome CDS3988152 276 + 0.536232
STY4160 3-methyladenine DNA glycosylase I, constitutivechromosome CDS4019343 582 - 0.517182
STY4237 putative membrane proteinchromosome CDS4104402 372 + 0.532258
STY4239 conserved hypothetical proteinchromosome CDS4105054 597 - 0.564489
STY4392 conserved hypothetical proteinchromosome CDS4252698 1125 + 0.536
STY4522 DNA helicasechromosome CDS4410683 1365 + 0.530403
STY4586 hypothetical proteinchromosome CDS4463285 921 + 0.438654
STY4636 DNA adenine methylasechromosome CDS4502229 861 - 0.465738
STY4637 putative exonucleasechromosome CDS4503086 585 - 0.439316
STY4645 phage integrasechromosome CDS4506245 1026 + 0.495127
STY4664 putative DNA helicasechromosome CDS4525533 1512 + 0.508598
STY4666 probable phage integrasechromosome CDS4528781 1014 + 0.455621
STY4676 hypothetical proteinchromosome CDS4538390 783 + 0.586207
STY4797 putative membrane proteinchromosome CDS4658590 447 - 0.447427
STY4821 integrasechromosome CDS4683853 1266 + 0.496051
STY4822 protein kinasechromosome CDS4685181 1077 - 0.363045
STY4823 protein kinasechromosome CDS4686254 1074 - 0.349162
STY4915 conserved hypothetical proteinchromosome CDS4774545 774 + 0.591731
dam DNA adenine methylasechromosome CDS4191069 837 + 0.492234
dnaB replicative DNA helicasechromosome CDS4311715 1416 + 0.550141
dnaC probable DNA replication proteinchromosome CDS4759357 738 - 0.51084
holC DNA polymerase III, chi subunitchromosome CDS4675956 483 - 0.536232
holD DNA polymerase III, psi subunitchromosome CDS4768834 438 + 0.59589
insA putative IS1 transposasepHCM1 CDS153973 276 - 0.536232
insA insertion element IS1 proteinchromosome CDS4518711 276 - 0.536232
insA putative IS1 transposasepHCM1 CDS2265 276 - 0.528986
insA putative IS1 transposasepHCM1 CDS106430 276 + 0.528986
insA putative IS1 transposasepHCM1 CDS108842 276 + 0.532609
insA putative IS1 transposasepHCM1 CDS177180 276 - 0.536232
insB putative IS1 transposasepHCM1 CDS153551 504 - 0.551587
insB putative IS1 transposasepHCM1 CDS1876 471 - 0.545648
insB putative IS1 transposasepHCM1 CDS176758 504 - 0.551587
insB insertion element IS1 protein InsBchromosome CDS4518289 504 - 0.551587
insB insertion element IS1 protein InsBchromosome CDS2249467 504 - 0.551587
insB putative IS1 transposasepHCM1 CDS109036 504 + 0.545635
insB putative IS1 transposasepHCM1 CDS106624 504 + 0.547619
insB insertion element IS1 protein InsBchromosome CDS3988346 504 + 0.551587
int integrasechromosome CDS1008747 1341 - 0.488441
int bacteriophage integrasechromosome CDS4541654 1260 - 0.566667
int putative integrasepHCM1 CDS121046 1014 + 0.61144
int integrase (fragment)chromosome CDS4539799 279 - 0.577061
mod type III restriction-modification system StyLTI enzyme modchromosome CDS394911 1959 + 0.466565
mucB putative DNA-repair modulatorpHCM1 CDS186216 1260 + 0.525397
mug G/U mismatch-specific DNA glycosylasechromosome CDS3235872 507 - 0.538462
mutL DNA mismatch repair proteinchromosome CDS4578042 1857 + 0.58266
nfi putative endonucleasechromosome CDS3566644 672 - 0.58631
priB primosomal replication protein Nchromosome CDS4606459 315 + 0.530159
radC putative DNA repair proteinchromosome CDS3924952 666 + 0.527027
rci shufflon-specific DNA recombinasechromosome CDS4435339 1152 + 0.49566
rdgC recombination associated protein RdgCchromosome CDS434430 846 - 0.546099
recB exonuclease V subunitchromosome CDS3001645 3546 - 0.556402
recC exonuclease V subunitchromosome CDS3008249 3372 - 0.537367
recD exonuclease V alpha-subunitchromosome CDS2999813 1836 - 0.585512
recQ ATP-dependent DNA helicasechromosome CDS3455088 1830 - 0.551366
relB RelB proteinchromosome CDS4647525 243 + 0.502058
rep putative replication initiation proteinpHCM1 CDS107709 756 + 0.480159
rhlB putative ATP-dependent RNA helicasechromosome CDS3496937 1266 + 0.546604
ruvA Holliday junction DNA helicasechromosome CDS1955713 612 - 0.553922
samB UV protection proteinchromosome CDS4472479 1275 - 0.50902
ssB single strand binding proteinchromosome CDS4422151 537 + 0.540037
ssb single-strand DNA-binding proteinchromosome CDS4321410 531 + 0.59322
tatD putative deoxyribonucleasechromosome CDS3436587 783 - 0.541507
tnpA transposase for insertion sequence element IS200chromosome CDS1715544 459 - 0.459695
tnpA transposase for insertion sequence element IS200chromosome CDS3013615 459 - 0.459695
tnpA transposase for insertion sequence element is200chromosome CDS446265 459 + 0.459695
tnpA transposase for insertion sequence element IS200chromosome CDS1529647 459 - 0.459695
tnpA transposase for insertion sequence element is200chromosome CDS4622105 459 - 0.459695
tnpA transposase for insertion sequence element IS200chromosome CDS271076 459 + 0.455338
tnpA transposase for insertion sequence element IS200chromosome CDS2330729 459 - 0.459695
tnpA transposase for insertion sequence element IS200chromosome CDS2539538 459 - 0.453159
tnpA transposase for insertion sequence element IS200chromosome CDS1367421 459 + 0.459695
tnpA transposase for insertion sequence element IS200chromosome CDS280088 459 - 0.457516
tnpA transposase for insertion sequence element IS200chromosome CDS3099690 459 - 0.459695
tnpA transposase for insertion sequence element is200chromosome CDS3122530 459 + 0.459695
tnpA transposasepHCM1 CDS122925 2973 + 0.60444
tnpA transposase for insertion sequence element IS200chromosome CDS507385 459 + 0.45098
tnpA transposase for insertion sequence element IS200chromosome CDS1082125 459 + 0.457516
tnpA transposase for insertion sequence element is200chromosome CDS1085337 459 + 0.457516
tnpA transposase for insertion sequence element IS200chromosome CDS1759921 459 - 0.457516
tnpA transposase for insertion sequence element IS200chromosome CDS3026477 459 - 0.457516
tnpA transposase for insertion sequence element IS200chromosome CDS1235316 459 + 0.457516
tnpA transposase for insertion sequence element is200chromosome CDS864041 459 + 0.457516
tnpA transposase for insertion sequence element IS200chromosome CDS657246 459 + 0.457516
tnpA transposase for insertion sequence element IS200chromosome CDS3092099 459 - 0.459695
tnpA transposasechromosome CDS3550557 414 + 0.461353
tnpA transposase for insertion sequence element IS200chromosome CDS2475976 459 - 0.459695
tnpA transposase for insertion sequence element IS200chromosome CDS1791357 459 - 0.459695
tnpA transposase for insertion sequence element IS200chromosome CDS1178594 459 + 0.459695
tnpR resolvasepHCM1 CDS122365 558 + 0.611111
topB topoisomerase Bchromosome CDS4418728 1995 + 0.528822
trhI putative DNA helicasepHCM1 CDS82216 1857 + 0.436187
uvrA excision nuclease subunit Achromosome CDS4318337 2826 - 0.573248
yafM conserved hypothetical proteinchromosome CDS4782631 486 + 0.485597
ybaV putative exported proteinchromosome CDS502837 375 + 0.522667
ybaZ putative methylated-DNA methyltransferasechromosome CDS516818 390 - 0.558974
yraN conserved hypothetical proteinchromosome CDS3292494 396 + 0.558081
yrdD conserved hypothetical proteinchromosome CDS4254294 543 + 0.528545
yrfE putative NUDIX hydrolasechromosome CDS4180698 597 + 0.522613