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# Dehalococcoides sp. CBDB1, CBDB1

>cbdbA675 putative DNA processing protein DprA
MPVLEFQKNKMQNQDNNYAIGFSYINGVGRVRLNLLDNYFGNLENAWHAG
KEALISAGLDNTLAENIVAHRPKIDLSKTLETLKRHDIQTYAHTDKDYPA
SLRQIHDYPPLIFVKGQLLPADELCLGIVGTRQPTVYGKLVTEELAESLA
RAGLTIVSGLARGIDTVAHTAALKAGGRSIAVFGCGLDIIYPSENHSLAR
QIAENGALISEHPPGIRPRPEFFPRRNRILSGLCRGILVTEAGENSGAVI
TANYALEQNREIFAVPGSILSPSSLGTNRLIQEGAKLVSSVKDVLEELNI
SLFSEENTTVEIIPENQTESLILGKLGYEPVHIDQICRECALGVALVSGT
LAIMELKGQVRSTGGMNYVRTREKKEIYQLEMN
>cbdbA108 putative helicase (Snf2 family)
MGGTFSIDNSSGNTEFQVGQIVRLKSNPTVRGPVIAVTSRKKENLYTVFV
NGETKMLYASQLQLEEGEKPEFQYLPLSRFHSYMTALQICHPSLSNLYSL
NSARIDFIPYQFRPVFKFIRSDRPRLLIADGVGVGKTIEAGLILQELQAR
RDIQSVLIICPRPLVMERKWQIEMRRFGEHFTHLEGSTLRYCINEMDLEG
IWPEQYKKSIISYSLFDEMLLFGPNGGNNRKRRKSLLTLDPPPRFDLVIV
DEAHHIRNTETYAHKAVRYFCDNAEAVLFLTATPIQLGSNDLFVLLNVLR
PDLIIDQKSFEHMAEPNPFINRAVAVTRSQQNEWEHEALVAIEEAASTAW
GQSILKNSPDFQRIRSRLLEGGIAPEERIALISDLEGLHTFSRIISRTRR
RDIGEFTVRKPQTVSVEFTPTQKALHDSLLEIQTEIFSRLHDDANVKFMM
TTLRRQAGSCIYGLAPFIEDILTRHIGELPLDESGEGEEVPDKDIVDKIK
PLIKTLIEKANSLETFDPKLEALKKVIRDKLTLPNNKIMLFSSFRHTLAY
IYKNLIAEGYRVGLVHGGTPDEERENIRDRFQLTGQDEKVIDVLLFSEIG
CEGLDYQFCDCMINYDLPWNPMRIEQRIGRIDRNGQKSETVAIFNMVTPG
TIDAEIYERCLLRIGVFKNSIGDNEEILGEISREIRAIAENFKLSESERQ
LKLQQLADNQIRLFQEQQKLEEKQVELFGIKLPAEQFKKEVDEASSYWLL
PSSIQGLVENYLQTLYEKDQEYKLGDKPIKTLRVSQDVRNRLLQDFQNLP
RQTSSLYREWESWLKGNTPNLPITFNANTVSGQPDAVFITPIHPLVRQAA
GAFDIHVRALTCLRAKSEVVPAGIYHFVIYQWQFHGIRDDMVLCPVTELD
VLNKELIHLLATAEEPSNGNSYEAPDTQLMEDLDNRHYNLWFEACEKHKK
RTRELAQHRRESLTTSHHARISLLNEYLEAASDEKIQRMRRSQIATAEND
YTRHVKELDTAIERADITTQPVAFGILIIEKGE
>cbdbA602 conserved domain protein
MRPLSYSQIDQYQSCPLKYRFLYIDGLKPLEKGYFSFGTTLHDCAEHFFR
VKVPPPLSLEKLMEYYQSHWRSGGYESVEIEENYRQLGREILAEFHRIHR
ADFHMPLAVEHQYTVNLDGVKLTGKIDRVDKLPSGELCIVDYKSNKDLFS
AEYVQDNLQLSLYQLAVEQIWYLPVGELCLYHLRSNTVMRCPARSKEVIA
DARRLVLEVAGKIEKAIFPACENNFCPCDFAHLCPLYRHKYAPPPQLPEA
SPIDIPLAVEEYVMLQSRKNEIEVRIESLKEAIIEYCRASSLGRVFGSEH
ALSYKEVSRSGYNNQAVYDLLEPLGLWDKVSELDKTLLEKYLETDACGKE
LKDRILALKEVVSTSPRLYVKQVSKDKDS
>cbdbA1432 DNA repair protein, RadC family
MSLPNKTDETPSSNPPANPNEGHRQRLRERFLKAGLDGLNDYEVVELLLT
LGTPRRDCKQAAKEAIKNFGSLRAVLEASPEELSGIKGIGAVNSVAIKLI
KEVSQRYLKDGIIEKPVCNTAQQVFDYLYCAMRGLKKEVFKVIYLDSQHR
VLDVADLFCGTVASGCIVPREVIAAAISKNASALIFVHNHPSGKTEPSQA
DKDVTRELVYAAMVMKIRALDHIIIGDNCYFSFAAAGIMGEYETGFLNLK
LKHVSEARRHIYRAELFGGNPE
>cbdbA833 conserved hypothetical protein
MPSNPLEEYNRKRNFAQTAEPSGVKSVPSDKPVFVIQKHLASHLHYDFRL
EIDGVLKSWAIPKGPSANPKEKRLAVATEDHPMQYASFEGVIPEGEYGAG
KVIVWDKGTFGNLKEGKTLAESYDTGHLVINLQGKKLKGGYSLLRTKMGW
LMVKMEDAFADRLSDILNEQPASVITGKLVEEII
>cbdbA524 putative exonuclease SbcC
MIPVKLKIKNFMCYRGEIPPFSFNGIHTACICGQNGAGKSALIDAITWAL
WGKSRAKSDDDVISLNEQEAEVSLDFEISGELYQVIRQRQRPKKAGANGQ
SLLSLFSLQDEKPRNITGDTLTQTEKKIISILHMDYDTFINSAFLRQGHA
NQFTQQPPGKRKEVLANILGLEIYDQLEDLARQAVREAEAKNLQIEQSIE
DGKESLKSRPELEEALNHTRKDLAEGEGKLKIQLAELEIMRHKKHSFDTK
QNACRQLDNDLKDISKDQSRWIQTLQEIKQRISTFETLSAQKEAIFKGFQ
EYSACQSLYDKHNRILAKLRQLENTKKPLEDAVYKEENNLKNTLGKYQER
LKFRQDTAQTLGILEKEKTQSDQLKTRLETEEAELKIQQNKLLNLQSSLA
RLETEHAVAVKEVNALEEKLNLLAEAGENRCNCPLCETELGQDKLKLVFG
KYKTEQDTQKNLQADLQEKLSQMQSDIQALLKYIETETNRLSHSHKQYER
QISLLDKGIAEAKEAEIKAAEGRNLIAGIEKQLNERSYAAAEQASLAVVE
KEIQGLNFDNAEYTRNQQNLADLTPFEEKKRKLDEALNRLPLENDSLKKA
SSALAELTARRDNKLNEQQTLLKELAELPVLEKELGEAETEYKSLSQRQD
DLRQQLGSLSQKAEQINELEKKLKKQAQEKDQTTQEINYFGKLVRAFGKK
DGIQTMLIEDTLPELENGADLLLSRMTDGRMHLSIETQRSTKKGDQTETL
DINISDELGTRNYETFSGGEAFRIDFAIRIALSHLLANRLGAPLRTLIID
EGFGTQDTTGIERLKEAINSIQNEFDKILVITHIDDLKDSFPTRIEIDKT
PSGSAIRLN
>cbdbA1366 conserved hypothetical protein
MEAYLDIETTGLSPYQSELTVIGIHLVNGSSIPGLIQLVGRECTAENVMS
SLAGADTIYTYNGKGFDLPFIHRKLGIDLSRHFNHRDLMFDCWAKNLKGG
LKKVECQLGIPRQLTEVNGYVAVQLWWSYINKSDIGALETLLAYNREDIV
NLKTLKDMLLTNCTY
>cbdbA111 atp-dependent exodnase, exonuclease v
MVKLPLKHLSVRVPWHDNGWNGTVCKNPRDNGSCLALKNIQPTKDADYEE
KIAGCPFSNIDVDKRPPCVSERVSFMCPDKLQRETKHPYSDSHEDYKHYR
NTFINLPPYSSAIVPFRWMMRNTNTYQSEIADLNGVKYDPSKEPDLGFPS
RWVQFHENQRELLDTFISAIQPEESLIFFYAKHVPLSEAANRILIGVGHV
KSIFPVQEYDCEPKIPGKQSYIWERVVEHSIRGNWENGFTGGFILPYQEL
LDLQGNGKEIDLESFIAPASNWDEFSYGAEHVSHSTAIDALHTLANTLKI
MEQPLGRSFDTQYKWIDDRISELWKMRGAFPGIGPVLTAFGLKEGNFIAW
EISKKIENEQPEPELFNSWLVVEQMFNNPGSVLPIHLAKKVGSVVRAAWK
GLDPDTKEYFMLLSRLELNNEQADAFFDADNRIKNGFEAHTTKEYLENPY
LLFEASTGCQTQVTLSMVDKAVIPTDSIRRALPLPELSAIDDPLDGRRLR
AVIIQVMEDAAIEGHSLLPEYLLIERANALALEPKISIKTHILQAIKNYL
NPKVQVTEATEELPKFYQLLRLIEIKKVIQDFVEKRHTKGQSLIIEADWQ
ELVNQKLGPIDQKLPEYIKVNEKKARIEKTVALGELAKGRFSVMVGPAGT
GKTTVLDILCNLPEIKSKGVLKLAPTGKARVKLGLGAKTLAQFLYEYKRY
DPQSNRCFMKDGDYYSEAKTVIVDEASMLTEDQLAALINCLSGVERFILV
GDFRQLPPIGTGRPFVDIVNYLEGGFDSQLWPRSGKGYAELTVVCRQKPS
GVSNECERMDIRLARAFSGKHEQDEGDIFEILSGQPEYPELKLIQWDTPS
ELETKLQTTIESELNIKSEQRVKDFDKSLGGENWSVESKLAVKSSFKKDK
SKSIESWQILSPVRGHGHGIIAINQAIQKTYRYDIKKLAYDYRAKRIPKP
RGNDCIVYGDKVINNRNMSWRGKFDNVYPDNEDCLKYIANGEIGLVIGKY
RKQYETWRGELPTEVVFSSQPEYVYKFTSYYFREEAESPLELAYAITVHK
SQGSGFQTVFLILPSPCMLLSRELLYTALTRQEDRVLLFHQGEFRDLKKF
TSGEFSEIAKGLNRDGVPAPAGGKWGKQRLHKILTNEAYTGRLIWGKAHK
GKTSLPPVIKDNAWPAIVDKSVFENVQVTLSERAPKVTHPRVASSNYLLS
GLVRCRNCGASYIGYGAKSGQFHYYVCGTAYSKGKEACPSQHLPREKLER
FVTDKIKGYILTDGHLLDLIKQSNEAFDVADNKRKERVGVIDKEIEQWEG
RLERLYEFVETKKIEPDRMAQRIADVQDKLNLMRQAKLDLENGQGANRAA
YIDPQKVLSYVAELRHFLDERGLFERKAFLRSFIEQIRVGDNKVTLDYTL
PLAPANIKQETVSVLDIVSSAPP
>cbdbA67 conserved hypothetical protein
MGDKWIGAALSDPLRILASPLVILRRDDDTKTLENIESLVKTHQPDLLII
GLPISLNGTIGPQAEKVKSFSELLSRHLNIEIIYRDERFSTDEARRKMND
SGKNNKTVRDDAAAAAVILQDYLDETNPPCCQP
>cbdbA1706 DNA repair protein, HhH-GPD family
MDKENLAQNLADIFQRLLKKYGPQHWWPAESRFEMMAGAVLTQSAAWTNV
EKAISRLKEANLLSAEAILQAADNALAESIRPSGYFNVKVRKLKALSNWL
QTGYGGQAEKLLEIESSVLRNELLSVWGIGEETADSILLYACGKPVFVID
AYTRRIFSRLGLTEKEAGYDHLQRLFTANLAADAALYNEYHALIVRHAKE
HCRVKPGCEGCVLKDVCRFDYRE
>cbdbB31 transposase IS3/IS911-family, orfA
MPRKAFTAEQIINKLREAELILNQGTTVPEACRKIRVTDQTYYRWCKEYG
GLNIDQAKRLKDLEKENVQLKRLVADLSLDKAILKEASRGNS
>cbdbA1227 NUDIX domain protein
MDNQSCTQPVVTAFLIKGGKVLLFKRSQRVGSYRGCWAAISGHMDTAPLE
QVYTEITEETGYEPEDLVLLKEGQVFEYHDTVLGICWQIHPFLFHLKVNR
QPQMDWEHVSFCWVFPAEIASLSTVPLLKEAFESLS
>cbdbA299 hypothetical protein
MKNEGLKPLFSKSVSLLGRFERYQIKYIPRAQNSEADALANKALDGGS
>cbdbA546 DNA repair protein, RadC family
MPLAERPRERLQSLGAGALSSVELLAVILGRGVAGEPVLQSAQRLIAHFG
GPSGIACASVEELSKLKGIGLAKACQLKAAFELAKRAGGIKGEYQPCIKT
PEDVFQIIYPLVCDEKKEYFFCLMLDVKSRLIRVGHISVGSLEASVVHPR
EVFKEALSASAAFVILAHNHPSGDTEPSHDDIGLSARLREAGGIMGIEVL
DHIIIGGQSFTSLKRQGLL
>cbdbA1249 ATPase, AAA family
MPERIMDLFDAGAEKLKKSQSPLAARMRPETLAEFVGQSHLIGEGRALRL
SLESDKIPSLIFWGPPGSGKTTLANIIAHSLDAHFSALSAVSAGVADLRR
VVEEARERLKLYHRRTILFIDEIHRFNKSQQDAILPYVEDGTVVLIGATT
ENPSFEVNSALLSRAQVYVLNSLSEKEISVILKRSLEGENGLGNYHARLL
EEAEKHISSFAQGDARIALNILELAVMTTLPDKDGWRVVGLPQVEDAAQK
KSLRYDKSGEQHYDLISALHKTMRGSDPDAAIYWLGRMLEVGEDPLYIAR
RVIRFATEDVGLADPQGLVIAMAAQQAVHFLGMPEGKLALAEAVIYLAGA
PKSNSVYVAYTNVQKEIARNPQADVPLHLRNAPTGLMKDLGYGKDYKYAH
DYQNHFVKQQNLPEVIKDHRFYTPGKIGYELNILNRLRAWWGNAKAEAST
GENQDDS
>cbdbA416 MutT
MVEKILSSHYIYCGNLVKLRKVTVELPSGKTAPRELVEHNPCVVVVALDT
DGKLLMVKQYRLAAAQDMLELVAGSMDSGETPEESTRRELREEAGYKPNT
LRRLGGFYSSPGFLTEYLYVLVATDLEYAPLTAEDTEDIEVFRYTPAEVK
AMIANQQITDSKTLAGLMLYFSQTSG
>cbdbA196 putative methyltransferase
MRIIAGDAKGKNIIVPQRKATRPATELVRGAMMSMLEAVAEDWSEVLDIY
SGSGSLGLEALSRGAGHVDFVEHERCCCDIIKQNLETIGCASQAHVYCLD
VPKAMAFLKKQYDVILADPPYRNQQIGEVLEKLGNSGLIGENTVMAVTHS
AHLTLAECYGRLKMLKEHRHGDSLIAIYRKDSSFDSHLPGPV
>cbdbA513 dnaD
MSNPPPVPVRQEFTPVSRYFIHRVAPLIEDPAELKVSLAVFSLVQAKKGY
PRYTTLAELGAEETLMNTLGKTPNESLQSLEKALKMAVERGTLLGLELKS
GKHNHQLYFINTEADTAVVEKIKNGSLALPGLKEVTAEVITGKTGQPNIF
KLYEQNIGLLTPMLADNLKEAEKLYPEEWIAEAIKEAVSLNKHNWRYIER
ILENWSSQGKNSGTHKGNTGETDKYKGQLYDHLVQR
>cbdbA915 Smr domain protein
MMLRYLMPYNLKRSRPDNVPNEISLRHLTVDEALPAFKQYLNDAFMAGHM
VIKIIHGKSGGVIRGLVWDELKGHSLVQSYRLGEYGEGGSGVTIAYLERR
>cbdbA887 hydrolase, TatD family
MLEYVDTHAHLDMAEFDADRSEMLKRACDNGVKTIITTGIDIPSSQKAID
LAAANSGIYAAVGIHPQECTGVTEADFARLDILSITDKVVAIGECGLDYY
RDYSPRHTQLETFYHHLDLADKSGLPLIIHCRQAEEDVLKILADWSAQSP
AGEGKGVIHCFSGSAETALKYINMGFYIGLGGYIGYPSSKKYRADFAAIP
LEHIVLETDCPFLPPQPYRGERNEPAYVPQTASTLAEIKNLQIEEIASAT
TANARRLFRLDK
>cbdbB2 putative recombinase protein
MTARQPGNIHPRTIPSQYLLSGLAFCGCGASLTGHSAKSGRHFYYQCNRK
FKQGNEVCNGQAIPKSKLESAVITQIKSRILTEENLENLVSLVNKDLELA
SVQYNERLAVIDTELEDIRQRLNRLYEAIESGKLDYSDLSPRIKDLRSRQ
SDLEKSRVLAEAELLASGSESIKLEQVKAYADDLKQLLAEAEISECKAFL
KTFVKKIEINGNEATLKYRLPLPGLKNGKEVLPIETLGGAGGIRTLYLLT
ASQTFSQVNYGPSNR
>cbdbA1485 hypothetical protein
MKSTSIILFNINDFLGRLPDVKKVGERRWVASCPVEGHSTPQNHLSITDA
GDKILLACFSNRNHSYQQICQALGLRPESQPINPKRRIDALYDYRDKDGK
LLYQVVRYKPKSFTQRRPDGKGDWIYNLKGITPVLYRLPELSATPKGQVV
FIAEGEKGVNSLVEQGLTATCSPMGAGKWREEYNSAFINRDVIILPDNDE
PGKRHAEQVFTSLSKIAKTVQIVQLTGLKEKEDIHDWFNQGHSSQDLLKL
IEVKPSLSRSEAINLPALLDDIASFIRSYVVLSDYQLQAISLWVIHTYTL
ENALTTPYLNIYSAEKRSGKTRLLEVLEVLVARPWFTGRVTSAVLARKVD
AECPTLLLDESDAAFKGEKEYSETLRGILNTGYRRGGKSSVCVGKGADIS
YKDLSTFCPKAIAGIGKLPGTLADRSIPIQLKRRNVNETVAKFHPRKITT
EIQSLKERLVQCTSIGLSEIELIMPSELDDRAADCWEHLLIIAETAGNSW
PEKARIAAIALMTGEVRQDDSLGIQLLTDIREITKDKSEHISSADLIEAL
LKVDESPWSDLNGRSLNARRLAALLKTYGIHSQTIRQGSRTFKGYQVADF
QDAFNRYLSKNGLLSVTSVTDSFEPIVKYEPNSSVTNGPKEQNVTDNLQS
YANRNVTLVTDKTLFIREKDKNELDDESESDTSCEVLDSWRKTAIPAWRR
VLKESISLGDIKREEYARKMLQEVLKDPAYREVQS
>cbdbA971 conserved domain protein
MAGNNPNIFNINDNEFNIIPKGLDPEQVKSFVGKLIEENGSLTAELSKLK
EQAEHLESLKRLADTTIIEADKLAATLKEEAITKAKEESDSLLAKAEEKA
KKVYEQIYRQLNTLKQQVNNLDKDFDFNTEGEKPAIEPVIPAAVKETPVR
AKDDFMAKAVANSDIMESTTQELVIRDKEIELEILPPVDAVKITKIMDQL
ENASEVEVVELIPRPNHPVIIVYENKPNSLLDVLKKLSMVGKVNEIPASP
NGSGIVRRKYEISLVASVVK
>cbdbA1156 hypothetical protein
MAKLVLDLHDIYNKGGQIEAELHRVINQAVEKKISPVEIIPGKGSGQLKK
HVLRFLAQPDIKKLYHRLEKDDKNFGRVFVHFKF
>cbdbA1481 DNA invertase/resolvase family protein
MKVAIYQRRLKSDQGQTPSFQDLRDFALGQGWEIYNQYQDNVSIAGNSRR
NAWQELLADAALSKFDLVLIPQIDEVFSSVMDVAKTLGKLEVLKIGLRSY
SEPWFDTTSISGEALYQLSLSYAALEKNRQHRKLKSGLAHARKMGCQIGR
PRVTQRQGFNQAYGDILERLRAGQISRRQAAKALGIGYATLKRLLDSNYQ
GFRDF
>cbdbA709 probable site-specific recombinase / resolvase,fragment
MPKTAIYARVSTDKQTEANQLLALTQWANSRGWEIHEVYQEADTSWKAGH
QKELARLKTDAQHRKFDTVLVWALDRMSREGALVTLSLVDQLKAYGCRLI
SYQEPWTEAPGAAGEVMYAIAGWVAKMESQRRSERTKAGLARLKAQGKTL
GRPKGSVDRKRRKRRNYYVNH
>cbdbA1488 methyltransferase
MNTQSAAQLNRNAPPQTRTELKPILKYPGGKGRELKHILPAVPRTVDRFF
EPFVGGGATYFSMDNIKRYYINDISKELIATYRAVQLQDFDFLNTLSLIN
EDWKLISTLEHISFDLDIEDFTFVPTLTLVKLFNLESFFAEYLVKMIRRK
QSYVLKQKSKGNVISVDNKRSIFETVLKSSYYATIRKIYNQNRKDNKTQE
NTAFYFFVREFCYSSMFRFSQNGDFNVPYGGMSYNTKNFDEKLKYLRSVE
LRSHLNNTDIYDVDFQNFVDIFKFNNDDFIFVDPPYDTEFSTYDENAFDR
KDQTRLASFLRTTKAKWLLVIKDTDFTRSLYPQEDRNLFYQEFDKNYSVS
FMNRNDRNANHLMITNYKVVY
>cbdbA559 conserved hypothetical protein
MANIEIQEEYTELITQLKALANADNAAGMSRFGISSANTLGVSGKDIRRL
IVQAGHNHPLAMLLWDSGIHEARIMASLVAESRKVSPQEMETWVKDIDSW
DICDLCCNNLWYKTPFAYEQALKWTYREEEYVKRAGFVLLTALAVHDKKA
PDEKFVLFFPRLLAEASDERNYVKKSVNWALRQIGKRNLSLNKAAITLGE
EILAQNTRSARFIATDALRELKSPQIQERLSGSRKKPTDA
>cbdbA1480 probable site-specific recombinase
MTECKRAVAYVRVSSASQVEGYSLDAQERLFTELCKNRDWQSVRIYREEG
KSAHVDSIHKRLVFRKLLEDAAKDEFDVVVVHTLDRWSRNLTVTLESLKI
LGRYGIGLVSIVENLDYSKPDGILFTQMLGAFAQYFSEALSTHVRKGLDQ
RAYEGKHNGCIPFGYESCWETNEKGEKKQRCEPEHQSGIHIHPKEGQAAE
GLFRRYSAGTTTLSQLAAWLNEQGFRTRNTKNLPDANGNLVSGPRLFTSS
SVRNILHNPFYAGQITHRGKLMPGAHEALISQELFDLVQLTLRKNSGRSE
TLKALPDREYLLKGLVRCAYCGMPMWAQTYKSGNSYYREHKASRSIQECP
GHGGTIACHVIDKQVRELVSAIELGPRWLEEVLSIISLKDEVDRVKKERD
LTITKLHRMARVFMDGLIPEEEYSRQKKLLELSLESLVVPDYDAAQKAGN
LILNLPELWSKANLSEQRKILLTMLDAVYVDVKEHRSVIAVKAKPPFRPI
FQVAVSKKESKIHILNEPLSHEPSGSSVFLVETGEGRTPRPEKVTQDLLQ
DYPSI
>cbdbA1487 transposase orfB
MRISLGISERRACQVLGQARSTQRRKESITDDEAKLTLRIIELASKYGRY
GYRRITAILQIAGWRVNHKRVERIWRKEGLKVPQKQPKRGRLWLNDGSCI
RLRPEYKDHVWSYDFMVDRTANGRAFKTLNIIDEYTRVCLKIKVNRKIKS
QDVIDQLYDLFIFRGIPEYIRSDNGPEFTAKAVRKWLSRLGVKTLFIEPG
SPWENGYIESFNGKLRDELLDREIFTTLEEAKVLIEQWRREYNQVRPHSS
LGYRPPAPEAVLTMMTS
>cbdbA340 AP endonuclease, family 2 protein
MAELGLDGMEIEFVRGVYMKAPDTNPVRILSDLLRIKLSAHAPYYLNFNA
VEENKVKMSQHLLYQSAKMAHLCGAGSLVFHPGFYLTDSPSAAYESIRDN
IRPVASRLQEEGFDITLRPEVSGKVTQFGDLKETMALCSEIPGLLPTIDF
SHYHARTGKYNSYSEFSFMLSTMVDYLGENAVLNMHIHVSGIDYSPRGEK
QHLNLADSDFNYKELLLALRDRGCAGLVICESPNIEEDALLLKETYFSLA
>cbdbA512 ATP-binding protein, DnaC family
MCPLCKGAKFVYPVSAEGVTDFSRVVPCQCTQSESGADREKRLLTYSCLG
GLYKYTFEKLNSLGKTDEPHSQDTFKQAYEAALDFASNPTGWLVFTGPSG
AGKTHLAAAIANRRLSTGQPVLYKRASELIDDLKKSFEPDSDAGYSQSFD
ILKNAPLLVIDDLTVQSGSEWSKEKLDQLLTYRFSQELPTIITLSTPINE
LDPRIQSRLLDKSISKIYTVAPNPEDSLEYRWDNALALQKKMTFENYDHK
RSNLTPEQRQNIDAAYNLALDFSRNPESWLVFQGETGCGKTHLASAIVNE
RYRQGKPAMFVVVPEFLDHLRSTFSPESKTSYDQMFDAVKNAKLLVLDDF
GEQSSTPWAQEKLYQVINYRYNRRLATVITTRCQLSEIEVAISSRFVDPQ
ISMVFNITAPNFRCDSTGQQKQRPVSRMRTTRPQR
>cbdbB42 IS1477 transposase, orfB (fragment)
MISEDVIDQLFNLFVLRGIPEHTRSDNGPEFTAKAIRKWLVRLGFKTLFI
EPGSRWENGYIESFNGKLRDGLLNLEIFTTLAEAQVFITDWRMQYNQVRA
HSSLGYRPPAPETIMTAVTTLKVVSLFGG
>cbdbA757 conserved hypothetical protein
MAYNRKETGEFGEKLAAEYLKGMGYSIIQTNCRLPEGEIDIVGQDGEYLV
FIEVRTKRRLGYGLPAESVTPRKKAHLMASAESYIQKHRLEHFPCRIDFV
SVDLSQPEPRLELIKNALGEE
>cbdbA391 putative uracil-DNA glycosylase
MHDKEELLKGIYIEIARCVRCNLHTTRTCSVPGEGNADAKIMFIGEAPGF
NEDQQGRPFVGAAGKFLTELICSIGLTREDVYITNVVKDRPPGNRDPLPD
EISACCNFLDRQIEIIKPKIIVTLGRFSMARYFTGITISKIHGQPMRRDG
IIYYPMYHPAAALHQGGLRKEIEQDMLRIPRLLEELKCAEALLVPKEPPT
RQLGLF
>cbdbA189 ATP-dependent RNA helicase, DEAD
MSFESFNFDPAVMAGVRACGYKEPTPIQAQAIPPIMAGHDVIGLAQTGTG
KTAAYALPIIQKMLSTPRGRVRTLVIAPTRELACQISDSFRSLGQRARIR
ECSIYGGVNMDQQIRRLRSGVDVVVACPGRLLDHIWRGTIDVCGVETLII
DEADRMFDMGFQPDIQSILKCLVQPHQTLLFSATMPPEVRKLTLETQTNP
VTVQVGTQSPVSSVSHSVYPVKSHQKTPLLLEILKTVETKSVLIFARTKY
GAENLADEISKAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAA
RGLDIDHISHVINYDMPDSPEDYTHRIGRTGRFDRTGQAFSLVTGRDGDM
VRDIQRLLSSPIQRLRVDGFDYATTRNDGQNQSQRRDFAPRRGYSHGGYN
RPEMAVNETSQTDTPSEMPVSPARPFNPGFRPSRPANSAPRFHREGNFAP
RMQSHSSFEGTSAPAARPAARYNDRPAFRKENSFQTTEASRPSFRKETGF
TPREHTQADFENSEQPSGRRPARFNGKASFADRPARSGNKVGKPPFFRRS
KPAVSEKNETY
>cbdbA1518 cas1, CRISPR-associated protein Cas1
MRTLHELPRFRDRWSYLYLEMGRLDVEADSLGFHQGDTVVPVPIDQLGVV
MLGPGSTVTHAAIKSLSQNNCLIAWTGQDGVRLYAASIGGTYSARRLIRQ
ARLVSDDEKRLEVAWRMYRFRFNEVIPPVVSLESIRGMEGIRVRRAYAKA
SQEYGVEWKGRHYDQKDWSKGDPINRALSAANACLYGICHAGILSAGYSS
ALGFVHTGKMLSFVYDVADLYKTELTIPVAFKVAAANPTDLERQVRIECR
EAFYEFKLLERLLTDIAEVLGVSDDIGESPDEFEGRIVTLAIGTEDGSFS
WEPERSGEG
>cbdbA31 comeA, putative competence protein ComEA
MPEIFLYRPFLFISQPASDYLQPSIQYILTGKSFWYSLETFIHPFYSFGR
TYEGFQKVWSAAGTCSFGHNRQGCSETTPLAVYTPPQITEKPLEIYISGN
INLPGIYPAGTQDTLQSLLESSGGLKDNSELTTIYLSFNPPPLASSAQKI
DLNRAEIWLLVALPGIGEARASDIVSYRNQNGGFKNTLELMLIPGFSQSL
YDQIKDMICVSETADIS
>cbdbA12 dinB, DNA polymerase IV
MSIRRVMHVDLDAFFVSVEQAVRPELKDKPVIVGGKPERRGVVAAASYEA
RKFGIHSGMPLITAKNLCPQAIFIEGNHQLYREYSEKFMLILSDFSPFLE
PMGLDEAYLEVTGFESLHGSIAEMASKIRRRITAEMGINASIGIANSKVA
AKIATERAKPNGQCEVPAGEEASFLAPLDIAVMPGIGKKTEQHLKSLGID
TLGKLAALPASFLKSRLGAYAPYLSNAAMGIDNRPVEMPSEAKSISRETT
FETDTRNQTFLEAKLSYLSEKITATLRKRGKQARVVQIKIRFADFTTLTR
QKHLGQPASGNREIFQTALSLMNGILDSDRQTVRLLGVGISDFCGPEKQL
EIDPAKARLEKLDASLDKIRQKYGFSSVQTGRTYRLKDMF
>cbdbA1 dnaA, chromosomal replication initiator protein DnaA
MSIRPAQELWETALGEIELQVNKPNFRTWFAKTVGLKYDGSEFVIGVPNT
FVAEYLELNQRSLIEKTLINTTHSPVELCFQLIQSGQVPAAVPQTNKQKQ
ESPFNPRYTFESFIVGSCNRMAHAASLAAAQNPGKSYNPLYIYAEAGLGK
THLLQAIGHLANLNRRKALYVSGEQFTTDFISSIRNGQTEEFRSRYRDVD
LLLLDDVQFIGGKEQTEECLFHTFNDLHNSNRQIVISADSPPKSLPQLAE
RLRSRFEWGLTIEIEPPDEKTRLELLQLKAEQSGTELNMDTLEYLAQAVK
HNIRELEGSLNRVLAYARLLRAAITPDLAARALSDIGSRPVRENSPLRPG
NIISAVSQVFQIPTTELLGAARDKDTALARQFAMFILKQQNSASLVEIGQ
SLGGRSASTVSHACDKIQLELENSTFLRLKMTEVQNHLSQQRLP
>cbdbA514 dnaB, replicative DNA helicase
MLDSKLPPYDVDAEESVSGSLLIDGQAIFDIIPILKPQDFFTEPNRLIFE
ACMSLYGRSDAINQVTVAQELERLGKLEKCGGSAYLSHVVSVVPTSLDIE
HYARIVYRLSVMRQLIDAGQKISELGFKADPDVSDSLGKAEDLLFRLRHE
RSSLGFTHIKNILDKYFEPVPAPGSEGYQAIPHVLTGLTGMDTFLGGLQR
SDLIIMAGRPSMGKTSLALNIARNAAVEQRACTAIFSLEMSRESLVQRLL
SNEAAVNSRSIRLNESNPDEERKIMDAIGVLSEAPIFIDDSPQIRVAEIR
SKALRLRYEQNIDLIIVDYLQLIQGEGNTKENRVQEISYISRSLKGIARE
LNVPVIAISQLSRAPEFRSSHQPQLSDLRESGSIEQDADIVVFIYRDEFY
YKEEEWANLHPDQEYPREIADIIIAKHRNGPIGTVKCRFRHDLTRFENLG
SSTEPSFL
>cbdbA1436 dnaE, DNA polymerase III, alpha subunit
MFCHLHVHTEFSLLDGMCRISQLVVRAKELGMEALAITDHGTMHGIPRFY
KEAKEAGIKPILGSEFYLAYGDRTAKTAADKNYYHLVLLAKNNKGYHNLI
QLSSRSHLEGFYYKPRIDKELLEKYSEGLVCLSACPSGEVPRLILENRYD
EAREAALWYKKTFENYYIEIQRHPMPDLEKINSVLIPMARELDIPLVATN
DTHYLDKEDAPYHDLLLCIGTNALVSDEKRMKMEGEYFYLKSPQEMAEAY
QDIPDAIENTAKIAEMCNVSLDFGRLHLPEIDIPKGKTPDEYLADLCYEG
LPVFYPDAGPEILDRLKYELDVIKTTEFANYFLVTWDIIRFVKEKGLYYG
VRGSAASSIVLYCLGITALDPIRYKLVFERFLNIERKEMPDIDMDFQDDR
REEVIEYVVGKYGRDHVSQIITFGTLGAKAAVRDVGRALGMAYADVDRVA
KVIPFSPHMTLDKAMEESSELKEMYNQDAVVRNLVDAARKVEGLSRHAST
HAAGVVISKDPLTDHVPLQRLSKENNLGLVMTQYTMEDIAKIGLLKMDFL
GLVNLNILGKACAVIKEYTGQDIDPLAIPLDDQKTFELLAAGETVGVFQL
EGTGMRRYIKELKPTVFSDIGAMVALYRPGPMEQIPRFIKSKHGLEPITY
PHPALEPLLEETYGVIVYQEQVLFIAQTFSGYTLGQADILRKAMGKKIAA
VMQKQKANFVDGAMKNGYTREIADEVFALVEPFAGYAFNKAHATSYALIA
YQTAYLKANYPVEYITAYLQAFCDVTEKVVTAVTEARHMGIEVLPPDINR
SGANFEIEQAEGGVKKIRFGLAAIKNVGVAAVEPIVAERKANGDYLSVED
LCRRAEGSSLNKRVMESLVKAGALDNMGDRGTLFFNLPNILSLAQREQKM
KDSNQTTMFDLFSQQSPVPMTNLELEESPVTTREKLQWEKELVGIFISEH
PFTPYASSALEVTTALCGQIDEELHNQLVTVAGMVASVRVSATREGKPFV
MAEIEDLVGRVEIAAWPKVYNATKALWEEGNILLVEGKAVVRGDRVSIHA
EKVSRYQPETEKKAAPVFINAPQPKSEEKEPPAPQLQRLVVCIQQTENEE
RDIDCLNEVVETLRQYTGETEVRLCVVNHERVFILKMPDIWVYYCPELKN
KLAALVGSANVRLENNAPSG
>cbdbA527 dnaG, DNA primase
MNDAVEEIKQKLDIVSFIGQYTKLTKAGRTMRGICPFHSEKHGSFFVYPE
AQNWHCFGACNTGGDIFAFVMKKEGLDFKAALELLAEKAGVSLPSQINPA
IKDQRDRLYEINLSAAQYYHNLLLNSPQAENARIYLNSRGLNEQSLADFQ
LGYALADWQGLYDYLKERSYSDEDLLKAGVIVRSDEGRIHDRFRNNIIYP
IANYKGQIAGFGARVMDNSQPKYRNSPQTDLFDKSSLLYGLHLASASIRE
NNRAIIVEGYMDAIMSHQGGFTYTVACMGTALTERQIALIKRQTKNLVLG
LDSDSAGEEATLRAIDYENQMESEIRVAVPEGGKDPDELIRHSPQSWQEI
LDNARPLLDYIFEHSQRGLDLNSAAGKSKLADHLLPIISKMEDGVRQSHY
LGKLAEIVSTSQNRILERLKKLKNETRNAKVTEKEAPSGQAPKNPALEEY
ALSLLFTSAEVTRFAYNLHPEYLEIPQYRELLAIYNQSAEKDNLRPCLDE
NLREYYDNLMNKNPANDNIEDKFYDLCLRLRERYLRNLAVKLNQALSEIN
QPETTEYQALNDQCVKVNEELRSVFSLKDRRNQKQRRQ
>cbdbA1145 dnaN, DNA polymerase III, beta subunit
MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLE
MAISCWIGAKIEEEGSTTIPAKLLTEFVSSLPNDKIDLSLNAKSKALNIK
CARFEARITGVDSKDFPPIPKVENGISTKVSIDAFRQAVSEVVFASAADE
SRPVLTGVNAEFEGSTLTLAAADGFRLAVYKLPLLESVKTTTKVIIPART
LGELSRLASMDEEEALVINVDTAKSQILFRLKNIELVSQLVQGNFPQYNQ
IIPQSFTTRVVVDANQFLMATKTATIFARDGGGIVRLMMNPGGDTTPGKL
TISARSEEVGDNTGELDAVIQGEEAKIAFNGKYLLDVLGVLKAQQVALEV
TSPSSPGVIKPVGADNYIHVIMPMFVQW
>cbdbA563 dnaX, putative DNA polymerase III, gamma and tau subunits
MADMNCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPR
GTGKTSTGRILAKAVNCTTNQGKGEPCNTCPMCLSITEGSSMDIIEIDAA
SNTGVDDIRELKEKVQYSPSLANYKVYIIDEVHMLSNSASNALLKTLEEP
PPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLVDMTRKLGKISLAEGI
NVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQAALGISGD
ERIKALAENILKKDIKNGLKTLNAVLADGLDLKQFRRELLDYLRQIMLVN
SGAESSLELTADEKKALQKVSGITNLENITKAIKAFSQLDFSSDTASSLS
FELALIDASLDENTVPLPNKPKDEIPAVKADKPAPLEAPKTAASNNIPTK
EPKTETLTKPNTSAETAATPKPHTKESAPKLTRAAIPIEEKPKYTAPAPP
KEEEKVLIGAGDIIEQLKVSWKSILDQAPDNLKRSAAVAILRSAGVRPVS
MDKNIVTLSFKYKYHKDKIEELENRKVTAELISNFVGKTCTLVCISEAET
NHLVKQAQKLGAQIISVEEK
>cbdbA1728 gyrA, DNA gyrase, A subunit
MVTGNTRPINIEDEMKGSYLDYAMSVIVSRALPDVRDGLKPVQRRILYAM
NDLGMKHNTPYKKSARIVGEVLGKYHPHGDSSVYDAMVRMAQPFSYRYPL
VDGQGNFGSVDNDPAAAMRYTEARLAQIAEHLLADIDKNTVDFMPNFDSS
LEEPTVLPARIPNLLMNGSSGIAVGMATNIPPHNLAELCQAICYLIDNPD
CGVDELMQFVSGPDFPTGGTILGTDGIKSAYATGKGKIVIQAKAHIGEVE
TRKAIFVTEIPYQVNKAELVAKIAELVKERKVTGISDLRDESDRQGMRVV
IELKRDAEPQQVLNSLYKHTNMRTSFFVNMLALVDGQPQVLSLKEVLKNF
IDFRHLIITRRSQFELKAAKDRAHILEGLKKALDFIDRIIAIIRGSENGD
AARKNLIAEFDFSVVQAQAILDLQLRRLANLERQKILDEYAELMKRIGYL
EDLLSHPEKIYALVKEDAKDLKSSYGQPRATEISNQGVIEFRVEDLVPHM
DVIVTLSERGFIKRVPANVFRLQHRGGTGIMGMPTREADAVRFLSVSDTH
DTLLFFTNRGKVFSLRCFDIPDDSSRIAKGTAIVNLIPVTQDERITAILD
LKSFPADHFLLMATNKGEIKKTSLQEFTAVRSSGLIAMDLTASDELVAAV
ETIEEKDILLATRLGQSIRFPVSELRTSLRASGGVKAIVLSMEDEVVSMD
VAQEGTMVITVTENGAGKLTAIEEYPQQHRAGSGVINFKVVDKTGEVVAS
KVVSVTDQMMLISADGMVTRTQVKEEDPSHGIPIMGRATQGVRVMRLEEG
DRVVAVATF
>cbdbA4 gyrB, DNA gyrase, subunit B
MLDANKAKPGANSETYTASDIQVLEGLAAVRKRPGMYIGSTDQRGLHHLV
YEIVYNSVDEAMAGVCDRIKVIMFKDGSVSVEDNGRGIPVDIHSTTKISA
LETVMTVLHAGAKFGGKTYQVSGGLHGVGASVVNALSEWTTVKVRRNGKI
YQQSYLRGKPSTPLEEVGVSEGSGTTTIFMADSQIFSTTEYDFETLTDRL
REIAYLNKGLEVYIYDEKSDQERTYYFEGGITGFVRHLNRNREVRHRQPI
YITKKSDSTILEVAIQYNDGYSDSTLTFANCVNTVDGGTHLTGFRSALTR
AFNDYAHKSKFLKDTDPNLMGDDVREGIVAIVSVKLPEPQFEGQTKGKLG
NIEIKSFVESAVAEQLSLYLEEHPDDTKRILEKCITAAKAREAARKARDL
IIRKSALDTGTLPGKLADCSERDASLCELFLVEGDSAGGSAKQGRNRRFQ
AILPLRGKILNVEKASPDKMLAHEEIRAIITALAAGIDNDFDPSKLRYNR
LVLMTDADVDGSHIRTLLLTFFFRHMPRLITESHLFIAQPPLYKIKIGST
EHWVYNDAEKEAILAQTKSTKVDIQRYKGLGEMSAEQLWRTTMDPASRTL
LEVKVEDAAKADQIFNLLMGGEVAPRKAFIQSHSRTVKNLDI
>cbdbA60 holA, DNA polymerase III delta subunit-related protein
MNLLYIFTGSDDFSLKERLKQIKQALGDESLASANTTLLEAKNLTAAELL
NYVQTIPFLAPARLVIVNGLLERFEGAKGKTAAKDTANKNSPDEFARALD
NLPPTTLAVLLDYTTAKDGDYREKEKVSALATNPLFKIIGSRAEVKHFAP
LSAQNLPGWVMQRAKQSSIQMSVPAARLLGRLAGPDLWALSTEIEKLGLY
AQGRVIEEADVQAMVGYAQEVNIFSLVDAILDCKVKEAQQSLAAFTAGGG
SPGFLLFMLVRQLRLMVRYTALKKRGLKEAEVFKVMGGSEYALRKTASQA
VCQNMDSLKNIYTKLLETDLYIKTGRFEPELALSLLVAELCGRK
>cbdbA509 holB, DNA polymerase III, delta prime subunit
MWRIIGQDKVVSFLSNSLSQDKLSHAYVFHGPSGVGKKRMALTFAQALNC
QASPPPCQECSVCGRILSRNHPDIIHLELLSAEDASDGKAKAEIGVKQIE
DIQHAASLPPFEGKYKVFIIHQAEKLSLESSNRLLKTLEETGSQNIFILL
TADKSLLLPTVISRCQILELRYVEINLIREALLKQGLDAEKAELLSHLSH
GRVGWAMEGASSPEILEERKANIEKIIWILGQDEEERFDYASDLSNLFGQ
NRTAAEAILDMWLDVFRDMLLLKADANQNMTNIDYKDILYMASDKLGLTD
IRIAIDNILKTEDRLRANANPRLCLEVLMLSLPFVKEGTVKNG
>cbdbA577 ligA, DNA ligase, NAD-dependent
MFSPLIEVENLRREINRHNQLYYVQDNPEISDAQYDTLIRRLKELEEAHP
ELVTPDSPTQKVGAEPLKAFGIVNHPYPLLSLANAFSDTELEAWYQRVKK
LLGNISFQIDCEPKMDGLAVALTYRNGKFATGATRGDGFQGENITRNLRT
IHSIPLNAEPNAPPVFEVRGEVYLSKNGFAKLNRERADKGLPLFANPRNA
AAGSLRQLDPSVTAERPLDIFIYALGYSEDSLLPDSHWQILDYFSKIGFR
INPLNRLVNTMEEAKEYYRQMAANRASLPYEADGVVFKVDSVSLQHRLGD
VGREPRWAIAYKFPAEQVMTRLKKIGISVGRTGTLNPFAVLEPVNVGGVV
VKQAALHNEDDILRKDIREGDTVIIQRAGEVIPEVVAPVLSKRNPESKPF
RMEESLFNPNLNRPACPVCGGEIYRPAGEAMHYCTNVSCPAQFERQLEHF
VSRGAMDIRGIGESLSVILAQQGLVKNVSDLYYLTTADLLQLPRMGEKSA
DNIIDAIADSKTRPLDRVIFGLGVRHVGNETATLLSRHYGNIWALAKTGL
GELQTIPDIGDKIASSIVAYFSEEKNVAVIRRLEEAGVRLTSDQKPVNKN
MPFSGMEFVVTGKLESFSREEAQEKIRSLGGTAKDNVTKATSYLVVGADA
GSKLAKARSMGVKELSEREFINMLEQS
>cbdbA1211 mfd, transcription-repair coupling factor
MNLIGLLPLIDQSPSFNSLFESLDRGEADISVLDAGRGFSLAAVYRKLKC
PMLVITSQPERARELLEQIAAYSGEEPGFLPDPSLLPYQRAVSDRNSSLE
KMRLAGILGGFIRSGDARIIVTAVPALLQRYISPKVFEQSFVQVWTGLET
EPQNLICRFQQLGYRQESIVEMPGTYSHRGGILDIFPHTEDNPVRLEFFG
NTLESLRNFDPQSQRSGKQVNELTISPASEIFHLGQLPRQELKNKLDALL
TDNLNPEFSRTLSADINHLQEGLKPEYPEFFAPLFNTSSILDYLPADALV
VLDEPASIEQAAFHLDNEAEELRSDRLSQGELPSVYPRPYFSWAEISEML
KTKKRLIMASFGRESESLKLEFASPDNYVGRLTSLYEKLPELKGHAGRVV
IVSHQAARLTELLAEEGISTNVQTDILKTPPSASLSLVQGILGAGWSLSG
SLHVFTDAELFGFVKQRRLPSKRPVARKGVVLDIKPGEFVVHIDHGVALF
SGVSHMNRDGMDKEYLILQYAGGDKLYVPADQMDRVNRFIGSGDEPPSLH
RLGTQEWQRAKEKASESAEETARELLEIYAKRELASGYAFSADTVWQQEM
EASFSYVETPDQLKALYDVKEDMEKTRPMDRLILGDVGYGKTEVAIRAAF
KAVMDGKQVAVLVPTTVLAQQHYTTFRERLATFPVKVEVLSRFRSQSEQK
EVVENLEKGEVDICIGTHRLLQADIKFKDLGLVVIDEEQRFGVAHKEFFK
KLRAQVDVLTLSATPIPRTLHMSMVGVRDMSIIETPPGERLPIKTVVAAF
DERLIREAILREMERNGQVFFVNNRVMGINLLAERIQQLVPEARIGIGHG
QMAEEKLAAVMADFVRHELDVLVCTTIIESGVDVPNANTLIINRADRFGL
TQLYQLRGRVGRSSQLAYAYFLYEKEKRLSGDAEKRLKTIYEAAELGAGY
GIAMKDLEIRGAGTLLGVKQSGYINSVGFNLYTQMLSEAVAGLKATGSGL
SKEEIRLKNMPAPKLDLPLDAFIPEYYIQDLDLRLSIYQQLSALTSLAGV
QEKEKELADRFGAMPPELENLLYSIRLRLLAKKAHVDTIVTEGSQIVVRM
LGGLIINKSLLEPLRAGVIAGRNQVAIEFKKIGDKWKEVLEEVIWRLG
>cbdbA1110 mutL, DNA mismatch repair protein, MutL
MPIKLLDKATIARIAAGEVIERPASVVKELLENSLDAEAKRVDIVIREGG
IGYIEVSDDGCGITSSEVLLAFERHATSKLSSFEDIYAIASLGFRGEALP
SIAAVADLEMLTAVRTEESGTYLSLSGGEMLKHTRMARAAGTSIRLSRLF
SRVPARLKFLKTPQHEASKVTEVVVSYALAYPEVKFSLNVDGRNTLNTPG
NGKLRDAVLEVYGSDAASKMLDLENDTYRSSAINISGLVSPPEVSRSNRN
SLHFFVNRRLIQSRALQRAVEQAYSGLLTAGRYPMGVINIRLSGALVDVN
IHPTKAEVKFSDESAVFTSVQRAVRSVLVEKPPLLHVEEARPVYQPEAGR
QEHIWAEVQKLPNANTSYISPVIQSAKTSSLPLLRLVGQVGGLYLLAEGP
DGLYIIDQHAAHERIRYEEIAAETYSARACQSLLEPFILELNPVQEAMIE
KCKSELELMGFEMEEFGRRVYRVKSIPAGLKAHQAKALLAELADNPKDAP
AEIKERLIRLMACHTAVRAGQVLTDAEMRELLLKLEKTGIPGHCPHGRPT
IVKIDFSQLEKDFKRT
>cbdbA1344 mutM, formamidopyrimidine-DNA glycosylase
MPELPEVETVKNEIMPHLLGKKIIRMEALWAKTLCPPEADFNALASGTCV
TGLSRRGKYIIISLSSGLFISVHLKMSGGLTAIRAENGQAPRFTRAIFHL
ENGEQVYFTDIRKFGRITLLAGLDSVLEKLGPEPLEETFTAGVFWHRLSG
RKGPIKAVLLDQKVLAGVGNMYADEALFKACLNPLRSAESLSMAEVERLH
SAIQSVLHKAIQNKGASVSTYHRPDGSKGGAQLEFNVAHRRGESCPVCGA
PITRQLIRQRACYFCPRCQS
>cbdbA1137 mutS, DNA mismatch repair protein MutS
MENTTPLRKQYLDIKKNYPEAIVFFRLGDFYETFEEDARIAARELEIVLT
SREMGKGLKVPLAGIPYHALDNYLSRLINKGYKVAICEQVTKPGETKGLV
QRQVTRLVTPGTVVEPNLLQTKQNNFLLSLYLTEDSCGLAFADISTSEFG
CTQTNISELEAEISRLSPAEIILPKNQSLNLPIHLKATISKLDGYYFEAD
IARERLLRHFECQNLSAYGCENMPLAISAAGALLNYLEETQKSSLKQLER
LSVYTTADYMQMDSHTLSNLEIFRSSGGNSLKGSLLGILDQTKTAMGGRL
LRKFLGQPLLKQSDIEKRLSAVDYFFEESLARTSLAKSLGQIADMERMAN
RIRQKTILPRELISLKNSLETVSAIHRQFGLMPPPRLAYFLNGLKPLPEM
LDIINKTITDDPPSTLGDGKVIRAGFDPEMDKLCSLAGDARTFLSQMETR
ERERTGIKSLKLGYNRVFGYYIEISNANLGDVPPEFIRKQTLVNAERFIT
PELKEYENLILNAKERLLEMETGLYEQVLNQLGGFYSALLANATALAALD
VLSAFAEVAVRNSYVRPVFHPENRLDIRKGRHPMVEQGLGYGSFVANDIS
LSAEDCQIIILTGPNMAGKSTYLKQTALIVLMAQIGSYVPAETAELCLTD
RIFTRIGAREDLSAGQSTFMVEMVETASILNTATSRSLLILDEIGRGTST
YDGLAIAQAVVEYIHSQPSLTAKTLFATHYHELVELASYLPRVKNYNIAV
SEDRGEVVFLHKIVPGGVDKSYGIHVAKLAGLPKWVIKRAYEVLTELENP
AKKQPKSRTCQSQLQLPMTGQTSVLEEEIKELEIESLTPLAALNKLYELK
KKAEEQGL
>cbdbA542 nfi, endonuclease V
MNVKIKKLHNWDMTPTEAILLQRELAQKVSACGTLSSISLVAGADVWHSR
TSGMGRAAVVVLSYPDMNLVEVSRSEGDCHIPYIPGLLSFREMPLLLSAF
EGLESMPDFILMDGQGLAHPRRLGIASHLGLFLNKPVIGCAKSRLVGEYA
PLADEAGSYSDLYHNSQLVGRVLRTRRGVNPLFISVGHKICLEEACSRVA
DCCRGYRLPEPLRHAHLAAAQLI
>cbdbA889 nth, endonuclease III
MLVENPEKQALEIIKRLSVVYPDAKTALNFTTPFEMLVATILSAQSTDKM
INKITPALFEKYPDPKAFAEASLAELEQDIKSSGFFHNKAANIIGAARGV
VSRFGGVVPSGMADMLTLPGVGRKTANVVLHNAFGLVEGIAVDTHVKRLT
ERLGLTSNTDPVKIEQDLMALLPRTYWGDFSYYLIDHGRAVCDAKKPHCP
ECVLKDICPSAFLFIQAE
>cbdbA1428 ogt, methylated-DNA-protein-cysteinemethyltransferase
MSRVALKSLDTAVRRAETDSDIRWDIFKIQPGWVGVMASTEGICRLTLPQ
PGQAEALGQLKPPPGATRTDNLVSSLATKLESYFKGISTDFPFSLDLGGY
TPFESLVFQACAQIPYGQTASYGQIARQIGYPKAARAVGQALHKNPVPLI
VPCHRIIAGSGKTGGFNGGINIKCWLLTLEARKPSGL
>cbdbA1111 pcrA, ATP-dependent DNA helicase PcrA
MQDILTGLNPAQKKAVEAVEGPVLILAGPGSGKTRVITHRIAYLIKVVGI
TPHRIMAVTFTNKAAREMETRLNQLAPSAVGRLTMGTFHAICARILRQDG
LPLGVPSDFVIYDDDDQQSLIKQAMAELELDPKRYPPASIKNAISQAKSQ
LVLPAYYFEKGRSYFEEMVGRVYELYEKRLKQNKALDFDDLLLKVVQLFK
QYPEVLAGYQERYLHVMVDEFQDTNLVQYELVKMLSAKYRNICVVGDPDQ
SIYSWRSADLRNVFNFETDNPGAKVVLLEQNYRSTKNILEAASCVIAPNS
GRKPISLWTENESGQPIAVVETFNEQEEAQFVVSEIEKLTRYEKFSPGDI
AILYRTNAQSRALEEAFIRYGMPYRLVSGTRFYQRREVKDIVAYLRLLQN
PQDSVSLQRVINIPTRGIGAKTLSDLAQFAREQDISLYQSLINLSDENAP
KPPIPSRGLKPLIDFGALLKSLIIDAQTLPLLNLLDRLLEGISYREFLFA
SEDGEERWDNILELRTVAQQYQEILPPEGLSAFLESVALVSDLDSLEEGV
SAVTLITLHQAKGLEYPVVFMVGMEEGVLPHNRSFDDPAQMQEERRLCYV
GVTRAKKRLYLVRAFRRSLMGQSNVNEPSRYLKDIPQSITKGREKQPLLG
QQTPGQAVLPVIKQHVQSAGMPVKSAPSPAPKLLELEAGDRVLHPQFGEG
IVTSINRMKNDAEVMISFHSVGMKRLLLSFARLTKLEN
>cbdbA1348 polA, DNA-directed DNA polymerase I
MSKPVIVLFDGTNLVHRAYHVLPPLTVRKTGEVVGAAFGFASILIKVLTD
LKPDCYAISFDKKGPTFRHEMFKDYKAQRPPMPDELVSQLGRVRQIVDAF
NMPVYEQSGFEADDVLGTLATRAAAEGMEVIIASGDADSMQLVSPDIRIL
YPGPAGSFSNTSLYDEAAVRAKYGLGPEHVADYKALMGDPSDNIPGVPGI
GPKTAQKLIEEYGGIEDIYKNLDKISPPGLQKKLADNAEVARQSKILTTI
VCDLPLDFSIQECRSEHYNRQKVVDLFRELEFFRLINRLPGGENPGGGMT
DMFNTPQKVETRYIVANGQNLDSIVKRFTETKELALAVSGTSEEAIDARL
TALAISPAEGEAYFISAEFIGSASDGQMFVSEGHPGLIALLTNKNITKTA
HNAKYLMNLLASAGQEIQGLDFDTMLSAHLLGEKNLGIKDLVFEHFGVEI
ADVENILTQNGKKKSFSASELSEAAQLVADYTFRLKGLFAAQLAETKLID
LFVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQA
GHSFNIGSPQQLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVD
LILEYRMLVKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPN
LQNIPVRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIE
AFLKDQDIHTATAARLLNILPSEVTKEQRRLAKTVNFGVIYGMSSYGLEQ
ATELSLAEADKFIKAYFEKYPRVAIYFAEIKHQARTNGYVETLLGRRRYI
PEINSPNRILRESAERMAINMPVQGTSADIIKLAMVRLDEKLKEEKLESR
LLLQVHDELIFEVPDAELKRMSALLMETMSGAVTFEIPLKVELKSGANWG
DME
>cbdbA277 priA, primosomal protein N'
MAFAELAVNTPVLRPGSFSYSIPLGLEIKPGQAVWAPFGPKIVQGIVLEV
SDQPAFGQTREICGVISDTPLLSFHQLNLAAWISQTYLCSIYEALSPMLP
PSFERRSVAYISLEPSPLNKSEKPPATLSPSLQKIFDWLQTRDITPQTEL
ENIFGKKTTQTAILKLINQGLINRTYQISPVRTQTKFEKHFGLSEQALAF
IKDQTLPKLSPRQTEVFECLRENPQGISKSRLNLLVKNNAAILKALEKKE
LILTEEHQVFRQPIDYSHIETLPHLKLSPPQEKCLESINRSLNTPPEDDQ
NPRTFLLHGITGSGKTEIYLQALAEALRLGKKAIVLVPEISLTPQTIARF
AGRFPGRVAVLHSRLSPGEQFDEWQRIKNGQADIVIGPRSALFAPLDKPG
IIIIDEEHEWTYKQQNPQPRYHTRTVALKMTEEYGAVLVLGSATPDIDSY
FKAQNGLYQLLELPERLTPYRGASLPKTELVDMRTELSEGNRSIFSRNLH
ASIEKVLAKHEQAILFINRRGGASFIQCRDCGYVAMCKSCDTPLTYHPDQ
ENLVCHQCGRHYPNPLTCPNCKSRRIKYLGMGTQKLEEETGLAFPQAKLL
RWDSDVTKGKDSHQQIMDKFSRHQADILIGTQMVAKGLDLPGVTLVGVIN
ADISLNLPDFRAGERTFQLLAQVAGRAGRGLAGGKVVIQTYTPENYAIQS
AVCHDYPGFYAKEIAYRRELNNPPFQKLACLVFSHLNHDFCQQQAILLAQ
TLREKADSAGSGTLEILGPAPAFIQRLRGRYRYQIILRSPNPANFLRDIN
LGQGWSIDIDPYGLC
>cbdbA1700 recA, recA protein
MTTEKDKALELTVGIIEKRFGKGSIMKLSDPSFRQTVEFIPTSSLALDIA
LGVGGIPRGRVAEIFGPEGSGKTTLAQHIIAQAQKMGEKAAYIDVEHALD
PKYASTCGVNLDELLISQPDTGEEALGIAEELVRSAAIGVIVIDSVAALV
PKAEIEGDMGDSHVGLQARLMSQALRKLTASIGQTRTAVVFINQLREKVG
VMFGNPEVTPGGRALKFYSSVRIDLRRIETIKQGTVAVGTRVRAKVVKNK
VAPPFRTAEFDIMFDSGISREGNLIDLGVSSEVIRKAGAFFSYGDIRLGQ
GRESAKNYLAANPDLAQEIEEKIRASAVTLCSIGDGD
>cbdbA1194 recG, ATP-dependent DNA helicase RecG
MAFLPKLENQPIGRPAPQKAPKAKSPSKTPAKPKADTRLPALDGDVSLVK
GISAATAPKFHKLGVNTVRDLLYYFPNRHLDYSRLKKISQLEAGPEQTII
ANVWQSKVNFMGGRRSTEAVLGDDTGNMRAVWFNNPYMVRNLKPNARVVL
SGRVSIFQGRPVFESPEWEELPDEADLIHTGRLVPVYPLTAGLHQRSLRR
LMKNFIDISSPNISDFMPAETLKRTRLLPLSEAIRQAHFPDDEELKNAAR
NRLAFDELFILQLGVLAKKKRWHEQAGRALNVNIPDIDRFVSKLPFKLTD
AQTKCLADIKADISKGVPMSRLLQGEVGSGKTIVAVISLFTAAANGLQGA
FMAPTEILAEQHFKSVTRLFASIARVSTLLDGIYTFEGLLDRPLKVALLI
SDMKGSQKDILKEKIKKGEVDIAIGTHALIQKEIRFKSLGLAVIDEQHRF
GVEQRSALRSKGLNPHILIMTATPIPRTLALTLYGDLDLSVIDELPPGRQ
SIKTRWLKPEQRNSAYTFIRKQIQEGRQAFIICPLVEESEVIQAKAATAE
YETLSREVFPESRVALLHGRMNASEKETIMRHFSEGEMDILVSTPVIEVG
IDIPNAAVMLVESADRFGLSQLHQFRGRVGRGTEQSYCMFLAENPSLLGQ
ERLSIIESTQDGFKLAEEDLRLRGPGEFFGTRQSGLPKLRMASISDVGLL
EQARKEATRLFELDPELSLPENAPLEAEVRRVWPKKSEWS
>cbdbA922 recJ, single-stranded-DNA-specific exonuclease RecJ
MKILANCLWKLKPALPEETGQNFPYPPLISRLLYNRGITTIEAADLFLSP
DKRLNHDPFLFPDMEMAVSRIYKALLAGEKIVVYGDFDADGLTATAVLTT
GIARLGGNVTPYIPHRITEGYGLKISALEKHRAEGVSLVISTDCGITAIP
EIKRANKIGLDVIVTDHHTPLDELPPAYAIINPKMPCSTYPCKELAGVGV
AYKLIQALYRNLGREDEAKDLLDLVAIGTVADIVPILDENRYLVKEGVKL
LNAEPRPGLIEMAQLSRLHLGEIEPESISWIMAPRLNAAGRLEHAMAGYK
LLTATTISDSQELALWLENKNTERQQLTVRFVEKARAMLDTQFPPALLIF
SDAECPQGISGLVAGRLSDEYYRPSIVIKTNADSATGSCRSIPDFNIIQA
LNHFAHLFSHFGGHAQAAGFTLPIENLDAFVQGISAYAEEILSGMELKPF
IDIDIDTDLSLLCPATLRELERLAPFGEANPKPVFLSRGLNITDYRSMGS
NNEHLKLRIKHKGRFWDGVAFRQAKELSSFLQSPVDIVYNLELDKWCGTD
TLRLKIIDMAPSGTKI
>cbdbA1026 recN, DNA repair protein RecN
MLVELRVKNFGIIEDITWSPGEGLNVITGETGAGKSLVIDAVESLLSGRI
GDEQIRHQTNEATLEGIFYLNPASRLKIAALLAENGQELEDDTLIIRLES
KLAGRSVLRLNGSAISRSVLSRLCPYLIDIHGQSEHLSLLNKSFHLDMLD
GYAHTTIQRTEFARLANELTSLQRQLSEQEKINREAVRQQEFLRFQADEI
EAANLAEGEEESLLSKRQVMASTEKLKTLVHRSLEHLCSGQNGGALADLN
QAMQSIRKIAEIDPALKNTADEVEDTYFILEESIRLVQSYNRGLDFNPSE
LEDIENRLALIHSLERKYGRDIPQILAFLAKTKTELDNIGHFAQNIDRLG
GAITDLKSRLGDMASSLSALRKEAAQKLEKAVQTELSDLNMGQVIFKVNF
QTQADENGLPVDGQILGFSSSGTDLVEFFVSTNPGEPLRPLNKIASTGEI
SRITLALKSAASRLDDIPVMIFDEIDIGVGGRSGDMLGRKLWKLSQGHQL
ISVSHLPQIAAYADHHFYVSKTEFNGRINSHIEHLNTEGHLAELSVMLSG
NQTGEKSLENARELLKKASIFKETSPEQPELNIPLSGR
>cbdbA557 recO, recombination protein RecO
MTKPHDFKTKAIIVRKTKCGEADRILSLLTPDLGLIQGFAKSVRKTKSKL
SGHLELLCYSEVSLARGKAIDTITGSQTIQSFLNIRNSLQLSAMAFYACE
LAYHFSPEEAANPAMFQLLLSTLEELDNGSQPELCLKYFEINLLASSGYK
PELRECANCHKKLQATINYYSPESGGVICPNCRNTQIGMPVSVNTVKVLR
YIQENSFSSICRLKINREILSELELAIRANIRFVLEKEPKALLWLDSLRL
ADL
>cbdbA561 recR, recombination protein RecR
MKDTSLPSTAGVVNKLIDSLGKLPGIGPKSAQRLAFYLMRAPEDQVISLS
DTIRNIKNQISQCRICCNVADSELCPICQNTKRETNKICVVEQPQDILAL
EHVGVYRGYYHVLHGAISPTEGITSQNIRINELMVRLDNGQVEEIILATN
PTTEGEATAMYLSRLITPLGIKVTRLARGLPFGTELEYADDVTLSRAMEG
RQNF
>cbdbA756 rnhB, ribonuclease HII
MPATVICPSRAEEKLLRKQGFILIAGLDEAGRGCLAGPVVAGAVIMPPRL
KGDWVEMVRDSKVLSPAKREYLYCHIVSMAVTFGVGAVDNEQIDSMGIAP
ATRLAMKQAVEDLTCQPDFLLVDYLKLPDIPLPQKGIVNGDALCFSIACA
SIVAKVSRDRLMSKLDMEYPGYYLAKHKGYGTALHVECICQKGISPIHRR
TFAPLKGMIDGL
>cbdbA398 ruvA, Holliday junction DNA helicase RuvA
MISSLNGILEASGKDWAVINVSGVGFRCYMPATSPALIGGLGQRVRVFTH
LHVREDALSLFGFATTEELSLFETLIDVSGIGPKLGLAMLSVMNAEALAS
AIISGNAELLSTIPGIGKKTSSRIILELKDKIAKNWEAGVLSQVTEANSD
ILATLTALGYSSSEAAKAISSLGDNGDLPLEERIKLALNYFNNK
>cbdbA588 ruvB, Holliday junction DNA helicase RuvB
MSQEKERLISGKLVTDDAKLDTSLRPRCLPDFIGQKRLKDNLGVAIQAAK
QRGEALDHVLLYGPPGLGKTTLSHIIALEMGVNIRITSGPAIERQGDLAA
ILTNLKPFDILFIDEIHRLSRNVEEVLYPAMEDYALDIMVGKGPGARSLR
LKLPHFTLIGATTRYAMLSAPLRDRFGSIFRLDFYDEEAIHDIVRRSARI
LGVEADENGLHQIACRSRGTPRVANRLLRRVRDYAQVKGNGLITADIAAE
SLACLEVDKLGLDEIDHKVLKTIIHKFGGGPVGLETIAAAISEEADTIMD
VYEPYLLQLGFLERTPRGRQATRLAYQHLSIPYQNDKNNQQGLWTENGS
>cbdbA399 ruvC, crossover junction endodeoxyribonuclease RuvC
MRILGIDPGTLVVGYGIIEAANDELTLVGFSSLTPPACAPIPQRLAYIYK
GLVEVIELYQPDEVAVESPFADKNIKSALAIGKAQAVALLAAANHSLPVT
EYSPACIKSRVAGSGNASKEQIQEMVRLLLNLAEIPQPNDAADALAVAIC
HHSQRAFTNIISQGDLT
>cbdbA766 sbcD, nuclease SbcD
MKILHFADLHIGVENYGRFDSATGLSSRLADFLTAFDRLVAYAIDKKVDL
VVFSGDAYKSRDPSQTQQREFARRVSTLASSGIQVFLLVGNHDQPNAAGR
ATTTEIFDTLDIANVHVSGKAEVHLINTRNGPIQIASLPWLRRSSVLSVS
NQKEEKNLSIEELNQRVESYLAGIIENLAGQLDKNIPSILSAHLSVNTAK
VGSERNISIGYEPTVMLSNIANPAFDYVALGHIHKQQVLSSAPPVIYPGS
LERLDFGEEKDDKGFYLVEIDPLSHKTDFEFIKLEGRRFLTIELNLNADS
LDPTLEVINILQARQQDIKDAIVRLKLELPAEIGGQLRDSDIREALREAH
NFTISKNVIRLTRQRADGFKVEGLDPIQALEHYLEIKQTSAQEKKTLLEY
GRRLYSTLDNKQTKI
>cbdbA1019 ssb, single-strand binding protein
MVSLNKVMIIGNVGGEPEMRYTPSGHPVTSFKVATNWVYNTPEGERKQET
EWFTVVAWNKLAEQCNQFLSKGRLVYVEGRLRTRSWEGQDNLKHYRTEVI
ASRVTFLEKANVGTGIDAREDDNGGGELEPEDIPF
>cbdbA674 topA, DNA topoisomerase I
MKEKLVIVESPAKARTISKMLGKDFNIMATMGHIRDLPKSTLGVDVENNF
TPKYVSLKAKAKVIKELKEAVKNSKAIYLATDPDREGEAIAWHISEVTKA
NLSNPKRVVFHEITKEAIDKAFKNTRELDMDLVNAQQARRVLDRLVGYKL
SPLLWRKVQRGLSAGRVQSVSLKIIVDREREIEKFVSTEYWNIEALLSKK
VKSAAFKATLAGYVTKGKLEIHNESEADQIKKELEVSDYQVLKIKRKSNL
RQSPAPFITSTLQQEAWRKLRFSAKQTMVIAQQLYEGLNVEGEGEVGLIT
YMRTDSTNVARTAVAETRDYITEKYGPAYLPKQARVFSSKVKGAQEAHEA
IRPTRINRTPDFIKKSLSADQFKLYQLIWQRMIASQMSPAVFDNTTIDIE
AKHQPSKTRYLLRTTSSVNTFPGFTIVYIEGKDEDEEKEQSSLPPMEEGE
ELKLKSLDATQHFTQPPPRYTEATLIKALEQNGIGRPSTYAPTISTIQER
EYITKLKGSLKPSELGMLVNDLLVEHFPDIIGIDFTAAMEAELDKIATEK
LDWVPIIRRFYEPFIKEIEAASEKIEKIKPPEEELDELCPECNAKLVIKR
GRFGKFIACSRYSKEDDGCRYTRSYQIKTGAKCPDCNSDIVEKYSKKGKI
FYGCAGYPNCKFVSFYKPLTKPCPECGALMTKSGQNWAKCTKCGKRKKLE
DES
>cbdbA521 uvrA, excinuclease ABC, A subunit
MAQEYIKIKGAREHNLKNIDVQIPRDKLVVVTGLSGSGKSSLAFDTVYAE
GQRRYMESLSSYARQFLGRMEKPDVDHIEGLSPAIAIDQKGVSHNPRSTV
GTVTEIYDYLRLLFARTGHPHCPECGKEISAQSVEQITDAVQLLPEGAKI
LILGPLVRGRKGEYTQMFKDLRKSGYARVRVDGQIKDLSEDIELDKNKKH
DIEAVVDRLVVGQAGSQGRVADSVETALKLGGGLVVISVVDGQDMLFSEK
FSCADCGVSLGEIEPRTFSFNTPHGACQTCMGLGAKMELDPELIIPDKNL
SLADGAISPYQNQNWYFGQVEDLARRAGFSLNKPVSTFTPEQMQLLLYGE
GGDIHKYRNRYGRVREYTSGFEGVIPRLDRLYRDSESQGVRESIEKYMLA
SPCQACGGKRLRKEALSVKIGERNIADVAGMSVDEQFKWANELAGKNTLF
SKREQLIAAQILKEIRSRLGFLNNVGLEYLTIDRIAGTLSGGEAQRIRLA
SQIGSGLMGVLYVCDEPTIGLHPADDTRLVETLQKLRDLGNTILVVEHDE
SVMRAADYIIDMGPGAGEHGGRVVATGNISEIMQNPASLTGQYLSGAKVI
PVPEKRRDGNGQELLIQGARQNNLKNIDVHIPLGKLVCVSGVSGSGKSTL
VTDILFKHLAQVFYGAKDRAGGSDSITGTEHIDKIIEINQSPIGRTPRSN
PATYTGAFTNIRELFASVPESKVKGYGPGRFSFNIKGGRCETCGGEGYIQ
IEMQFLPDVTVPCEVCHGARYNREVLEIKFKDKNIADVLDMTVDRALEFF
ENFPKISSKLQTMQDVGLGYIRIGQPAPTLSGGEAQRIKLATELSKRATG
RTLYILDEPTTGLSFEDVAALLRVLQRLVDSGNTVVVIEHQLDVIKNADW
IIDLGPGAGIKGGQIVAEGIPEDVALNKASVTGKYLRRVLPKLK
>cbdbA397 uvrB, excinuclease ABC, subunit B
MPSFKIVSDFALTGDQPQAVEKLAKGLVSGLTDQTLLGVTGSGKTFTMAN
VIARVNRPTLIISHNKTLAAQLYSEMKEFLPENSVEYFVSYYDYYQPEAY
VPQKDMYIEKDSDINEEIDKLRHAATRALFERRDVVIVASVSCIYGLGEP
EEYRSFVLPLKKGQSFRRDLILRRLVDMQYERNDLDFSRGKFRLRGDTLE
IQPAYEELALRVEFFGDEIERIVSLDPVSGELLAGIEEINIYPAKHFVTS
AEKMAEAIKSIQAELEDRLKELEAEGKMLEAARLKQRTNYDLEMMEQAGY
CSGVENYSRHLAGRKAGSAPWTLLDYFPEDFLLIVDESHMSLPQIRGMYA
GDSARKKTLVDYGFRLPSAMDNRPLSFDEFKARVKQAIYVSATPGPYEKE
HSLQVVEQLVRPTGLLEPVMTVKPTVGQIDDLLEEVKKRVAKNERVLITT
LTKKMSEKLADYLVEMGVKTHYLHSEVDTLERIEILRDLRLGVYDVIVGI
NLLREGLDLPEVSLVAILDADKEGYLRSEQALIQTMGRAARHVDGQVIMY
ADKITGSMQRAMDEIIRRRKIQEDYNRLHNITPQGIRKAIKDINERIRSV
TAEVSGPEFRPTPTLREDIARLIKELESQMKKAAKNLEFERAALIRDRVV
ELRAALEIDPLGRK
>cbdbA1134 uvrC, excinuclease ABC, C subunit
MPNETLQNQIASLPENPGVYLMKNAQGEIIYVGKAAVLKDRVKSYFVPPS
RLTPKTCQLVSQINELEYLITGSEQEALILELNLIKRHRPYFNVRLKDDK
GFPYLKITLNEKWPRIYITRSMADDGGRYFGPFANTRSVRHTLQVLKELF
RFRSCNRTEPEKHSRPCLEYDIHQCLSPCTGKISKSDYDHLISQAILFLE
GKQDQVLKLLIRLMNEASARLDYETAALRRDQIASIKEVIEGQQLAARVT
GEQDAIAFAQEGDLSMVQVFFIRRGKLIGRESFCLQGTREEKPGDILSEF
AKQFYHSSTQIPPKIVTQYPVSDREILEKWLSQRRGDKVHITAGLRGQPK
ELINIVAENAREQLKQARIKNLSSSVTLTDALAELQTALGLSLPPQRIEG
YDISNIQGTNAVGSMVVFENGKPQKAHYRRFRIKTVKGADDFSMLKEVIS
RRFGRVHREDAGESFARLPSLMLIDGGKGQLSSVKETLDKLGLEGQAVIG
LAKEFEEIYLPHKSEPIRLAANSPALQLLQRVRDEAHRFALGYHLHIRQK
SGLTSALDGIPGVGPSRRRLLIKTFGSVAGIRQASFEKLSQVKGINQALA
LSIKELL
>cbdbA673 xerC, tyrosine recombinase XerC
MQENFNKYLEYLSVEKNVSPYTLRNYRTDLIGFVNYLIEKKVSSFDRVDR
YILRDYMSSLIAKGIVKGSIARKLSAVRSFYRYLMREGLIQKNPTLNASS
PRLDKRLPEFLTVTEVNKLLRVPDSSTPQGLRDKAFMELLYASGLRVSEL
VKLDIENMDLHSHQIRVWGKGSKERVVLAGLPAIQSIQNYLNLGRPLLKG
KRNTPALFLNPTGGRLSARSFQERLDKLAKQAGIEKHVHPHMLRHTFATH
LLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQARKVYMSSHPLARPQNN
IAGREDE
>cbdbA1133 xerD, tyrosine recombinase XerD
MRDDIQSFLNYLMVEKGFSENTSEAYENDLRQMTTFADKEAAKSGKIPGW
DNFTRQTMLAYMLDLKERNYAITTVVRKMAAAKSFFNFMVAEGKLKENPT
ENISTPKVGKPLPDAISISQVRALLNQPIKSGSSEAKRDKAMLELLYASG
MRVTELVNLNMLDVDLKEGFVRCFGKGRKERMIPIYPQAAQSVQEYLNEI
RPNLVRAEAEKALFLNRRGDRLTRQGLWQILKAYAREAGLDDVVTPHTLR
HSFATHMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIRRSYEKAHPR
AK