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2024-05-14 16:58:44

Gene list

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COG category: Replication, recombination and repair
Organism: Dehalococcoides sp. CBDB1, CBDB1

Number of genes found: 78

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Dehalococcoides sp. CBDB1, CBDB1
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA cbdbA111 atp-dependent exodnase, exonuclease vSubName: Full=Atp-dependent exodnase, exonuclease v; chromosome CDS103391 4272 + 0.419007
NA cbdbB2 putative recombinase proteinSubName: Full=Putative recombinase protein; chromosome CDS58013 798 - 0.45614
NA cbdbA512 ATP-binding protein, DnaC familySubName: Full=ATP-binding protein, DnaC family; chromosome CDS411970 1308 - 0.502294
NA cbdbA709 probable site-specific recombinase / resolvase,fragmentSubName: Full=Probable site-specific recombinase / resolvase,fragment; chromosome CDS577697 516 - 0.507752
NA cbdbA546 DNA repair protein, RadC familySubName: Full=DNA repair protein, RadC family; chromosome CDS445489 660 + 0.486364
NA cbdbA1706 DNA repair protein, HhH-GPD familyRecName: Full=Endonuclease III; EC=4.2.99.18; chromosome CDS1370499 672 - 0.47619
NA cbdbA108 putative helicase (Snf2 family)SubName: Full=Putative helicase (Snf2 family); chromosome CDS97184 3102 + 0.411992
NA cbdbA675 putative DNA processing protein DprASubName: Full=Putative DNA processing protein DprA; chromosome CDS555783 1152 - 0.489583
NA cbdbB42 IS1477 transposase, orfB (fragment)SubName: Full=IS1477 transposase, orfB; chromosome CDS1259895 390 - 0.494872
NA cbdbA196 putative methyltransferaseSubName: Full=Putative methyltransferase; chromosome CDS181003 579 + 0.499136
NA cbdbA524 putative exonuclease SbcCSubName: Full=Putative exonuclease SbcC; chromosome CDS423948 2580 - 0.463178
NA cbdbA513 dnaDSubName: Full=DnaD; chromosome CDS413303 711 - 0.461322
NA cbdbA340 AP endonuclease, family 2 proteinSubName: Full=AP endonuclease, family 2 protein; chromosome CDS293020 753 - 0.482072
NA cbdbA971 conserved domain proteinSubName: Full=Conserved domain protein; chromosome CDS790525 813 - 0.416974
NA cbdbA1487 transposase orfBSubName: Full=Transposase orfB; chromosome CDS1173967 804 + 0.476368
NA cbdbA559 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS453970 723 - 0.481328
NA cbdbA416 MutTSubName: Full=MutT; chromosome CDS351583 531 - 0.499058
NA cbdbA833 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS678883 555 + 0.436036
NA cbdbA1432 DNA repair protein, RadC familySubName: Full=DNA repair protein, RadC family; chromosome CDS1130429 819 - 0.503053
NA cbdbA1227 NUDIX domain proteinSubName: Full=NUDIX domain protein; chromosome CDS986244 411 - 0.474453
NA cbdbA915 Smr domain proteinSubName: Full=Smr domain protein; chromosome CDS749695 303 - 0.458746
NA cbdbA1156 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS940576 255 + 0.45098
NA cbdbA887 hydrolase, TatD familySubName: Full=Hydrolase, TatD family; chromosome CDS726380 789 + 0.484157
NA cbdbA1366 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1083169 498 + 0.445783
NA cbdbA602 conserved domain proteinSubName: Full=Conserved domain protein; chromosome CDS494143 1140 + 0.466667
NA cbdbA1485 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1170232 2208 - 0.445652
NA cbdbA757 conserved hypothetical proteinRecName: Full=UPF0102 protein cbdbA757; chromosome CDS618047 366 + 0.491803
NA cbdbA67 conserved hypothetical proteinRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS44628 402 + 0.467662
NA cbdbA189 ATP-dependent RNA helicase, DEADSubName: Full=ATP-dependent RNA helicase, DEAD; chromosome CDS172497 1686 + 0.514235
NA cbdbA1249 ATPase, AAA familySubName: Full=ATPase, AAA family; chromosome CDS1000987 1374 - 0.4869
NA cbdbA1480 probable site-specific recombinaseSubName: Full=Probable site-specific recombinase; chromosome CDS1165760 1668 - 0.471223
NA cbdbA1481 DNA invertase/resolvase family proteinSubName: Full=DNA invertase/resolvase family protein; chromosome CDS1167601 618 - 0.469256
NA cbdbA391 putative uracil-DNA glycosylaseSubName: Full=Putative uracil-DNA glycosylase; chromosome CDS333972 621 + 0.483092
NA cbdbA1488 methyltransferaseSubName: Full=Methyltransferase; chromosome CDS1174814 1116 + 0.337814
NA cbdbA299 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS262669 147 + 0.489796
NA cbdbB31 transposase IS3/IS911-family, orfASubName: Full=Transposase IS3/IS911-family, orfA; chromosome CDS1173656 279 + 0.501792
cas1 cbdbA1518 CRISPR-associated protein Cas1RecName: Full=CRISPR-associated endonuclease Cas1; EC=3.1.-.-; chromosome CDS1203162 930 - 0.516129
comeA cbdbA31 putative competence protein ComEASubName: Full=Putative competence protein ComEA; chromosome CDS23434 654 - 0.464832
dinB cbdbA12 DNA polymerase IVRecName: Full=DNA polymerase IV; Short=Pol IV; EC=2.7.7.7; chromosome CDS12474 1173 - 0.514067
dnaA cbdbA1 chromosomal replication initiator protein DnaARecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS261 1335 + 0.494382
dnaB cbdbA514 replicative DNA helicaseSubName: Full=Replicative DNA helicase; EC=3.6.1.-; chromosome CDS414010 1377 - 0.498184
dnaE cbdbA1436 DNA polymerase III, alpha subunitSubName: Full=DNA polymerase III, alpha subunit; EC=2.7.7.7; chromosome CDS1131463 3513 - 0.498719
dnaG cbdbA527 DNA primaseRecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS428261 1767 - 0.486701
dnaN cbdbA1145 DNA polymerase III, beta subunitRecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS933858 1137 + 0.501319
dnaX cbdbA563 putative DNA polymerase III, gamma and tau subunitsSubName: Full=Putative DNA polymerase III, gamma and tau subunits; chromosome CDS456742 1713 - 0.477525
gyrA cbdbA1728 DNA gyrase, A subunitRecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS1384559 2430 - 0.503704
gyrB cbdbA4 DNA gyrase, subunit BRecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS3884 1929 - 0.509072
holA cbdbA60 DNA polymerase III delta subunit-related proteinSubName: Full=DNA polymerase III delta subunit-related protein; chromosome CDS39161 1035 + 0.495652
holB cbdbA509 DNA polymerase III, delta prime subunitSubName: Full=DNA polymerase III, delta prime subunit; EC=2.7.7.7; chromosome CDS409522 1032 + 0.44186
ligA cbdbA577 DNA ligase, NAD-dependentRecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS466695 2034 - 0.499508
mfd cbdbA1211 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS975541 3447 - 0.501305
mutL cbdbA1110 DNA mismatch repair protein, MutLRecName: Full=DNA mismatch repair protein MutL; chromosome CDS897330 1701 - 0.510288
mutM cbdbA1344 formamidopyrimidine-DNA glycosylaseSubName: Full=Formamidopyrimidine-DNA glycosylase; EC=3.2.2.23; chromosome CDS1066005 813 - 0.512915
mutS cbdbA1137 DNA mismatch repair protein MutSRecName: Full=DNA mismatch repair protein MutS; chromosome CDS927033 2577 + 0.493597
nfi cbdbA542 endonuclease VRecName: Full=Endonuclease V; EC=3.1.21.7; AltName: Full=Deoxyinosine 3endonuclease; AltName: Full=Deoxyribonuclease V; Short=DNase V; chromosome CDS442384 672 + 0.516369
nth cbdbA889 endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS727148 657 - 0.465753
ogt cbdbA1428 methylated-DNA-protein-cysteinemethyltransferaseSubName: Full=Methylated-DNA-protein-cysteine methyltransferase; EC=2.1.1.63; chromosome CDS1129482 564 + 0.526596
pcrA cbdbA1111 ATP-dependent DNA helicase PcrASubName: Full=ATP-dependent DNA helicase PcrA; EC=3.6.1.-; chromosome CDS899129 2217 - 0.496166
polA cbdbA1348 DNA-directed DNA polymerase ISubName: Full=DNA-directed DNA polymerase I; EC=2.7.7.7; chromosome CDS1067442 2712 - 0.490044
priA cbdbA277 primosomal protein N'SubName: Full=Primosomal protein N; chromosome CDS243528 2448 - 0.511438
recA cbdbA1700 recA proteinRecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS1364732 1014 + 0.497041
recG cbdbA1194 ATP-dependent DNA helicase RecGSubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; chromosome CDS963716 2223 + 0.507872
recJ cbdbA922 single-stranded-DNA-specific exonuclease RecJSubName: Full=Single-stranded-DNA-specific exonuclease RecJ; EC=3.1.-.-; chromosome CDS754715 1701 + 0.494415
recN cbdbA1026 DNA repair protein RecNRecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS830182 1767 + 0.47425
recO cbdbA557 recombination protein RecORecName: Full=DNA repair protein RecO; AltName: Full=Recombination protein O; chromosome CDS453110 762 - 0.471129
recR cbdbA561 recombination protein RecRRecName: Full=Recombination protein RecR; chromosome CDS455797 615 - 0.492683
rnhB cbdbA756 ribonuclease HIIRecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS617419 639 + 0.513302
ruvA cbdbA398 Holliday junction DNA helicase RuvARecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS340949 585 - 0.512821
ruvB cbdbA588 Holliday junction DNA helicase RuvBRecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS484087 1050 + 0.499048
ruvC cbdbA399 crossover junction endodeoxyribonuclease RuvCRecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS341530 504 - 0.501984
sbcD cbdbA766 nuclease SbcDSubName: Full=Nuclease SbcD; chromosome CDS624829 1248 + 0.454327
ssb cbdbA1019 single-strand binding proteinRecName: Full=Single-stranded DNA-binding protein; chromosome CDS825313 408 - 0.514706
topA cbdbA674 DNA topoisomerase IRecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; chromosome CDS553665 2112 - 0.467803
uvrA cbdbA521 excinuclease ABC, A subunitRecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS420180 2835 + 0.508995
uvrB cbdbA397 excinuclease ABC, subunit BRecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS338909 1995 - 0.503258
uvrC cbdbA1134 excinuclease ABC, C subunitRecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS923652 1824 + 0.505482
xerC cbdbA673 tyrosine recombinase XerCRecName: Full=Tyrosine recombinase XerC; chromosome CDS552741 924 - 0.478355
xerD cbdbA1133 tyrosine recombinase XerDRecName: Full=Tyrosine recombinase XerC; chromosome CDS922578 909 - 0.481848