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2024-04-29 00:14:28

Gene list

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COG category: Replication, recombination and repair
Organism: Dehalococcoides sp. CBDB1, CBDB1

Number of genes found: 78

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Dehalococcoides sp. CBDB1, CBDB1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA cbdbA1488 methyltransferasechromosome CDS1174814 1116 + 0.337814
NA cbdbA602 conserved domain proteinchromosome CDS494143 1140 + 0.466667
NA cbdbA111 atp-dependent exodnase, exonuclease vchromosome CDS103391 4272 + 0.419007
NA cbdbA1227 NUDIX domain proteinchromosome CDS986244 411 - 0.474453
NA cbdbA546 DNA repair protein, RadC familychromosome CDS445489 660 + 0.486364
NA cbdbA559 conserved hypothetical proteinchromosome CDS453970 723 - 0.481328
NA cbdbA189 ATP-dependent RNA helicase, DEADchromosome CDS172497 1686 + 0.514235
NA cbdbA833 conserved hypothetical proteinchromosome CDS678883 555 + 0.436036
NA cbdbA108 putative helicase (Snf2 family)chromosome CDS97184 3102 + 0.411992
NA cbdbA915 Smr domain proteinchromosome CDS749695 303 - 0.458746
NA cbdbA1487 transposase orfBchromosome CDS1173967 804 + 0.476368
NA cbdbA1485 hypothetical proteinchromosome CDS1170232 2208 - 0.445652
NA cbdbA1480 probable site-specific recombinasechromosome CDS1165760 1668 - 0.471223
NA cbdbA416 MutTchromosome CDS351583 531 - 0.499058
NA cbdbA196 putative methyltransferasechromosome CDS181003 579 + 0.499136
NA cbdbB42 IS1477 transposase, orfB (fragment)chromosome CDS1259895 390 - 0.494872
NA cbdbA757 conserved hypothetical proteinchromosome CDS618047 366 + 0.491803
NA cbdbA971 conserved domain proteinchromosome CDS790525 813 - 0.416974
NA cbdbB2 putative recombinase proteinchromosome CDS58013 798 - 0.45614
NA cbdbA391 putative uracil-DNA glycosylasechromosome CDS333972 621 + 0.483092
NA cbdbA1432 DNA repair protein, RadC familychromosome CDS1130429 819 - 0.503053
NA cbdbA1366 conserved hypothetical proteinchromosome CDS1083169 498 + 0.445783
NA cbdbA67 conserved hypothetical proteinchromosome CDS44628 402 + 0.467662
NA cbdbA340 AP endonuclease, family 2 proteinchromosome CDS293020 753 - 0.482072
NA cbdbA1481 DNA invertase/resolvase family proteinchromosome CDS1167601 618 - 0.469256
NA cbdbA1706 DNA repair protein, HhH-GPD familychromosome CDS1370499 672 - 0.47619
NA cbdbA513 dnaDchromosome CDS413303 711 - 0.461322
NA cbdbA709 probable site-specific recombinase / resolvase,fragmentchromosome CDS577697 516 - 0.507752
NA cbdbA524 putative exonuclease SbcCchromosome CDS423948 2580 - 0.463178
NA cbdbA1156 hypothetical proteinchromosome CDS940576 255 + 0.45098
NA cbdbA1249 ATPase, AAA familychromosome CDS1000987 1374 - 0.4869
NA cbdbA887 hydrolase, TatD familychromosome CDS726380 789 + 0.484157
NA cbdbA299 hypothetical proteinchromosome CDS262669 147 + 0.489796
NA cbdbA512 ATP-binding protein, DnaC familychromosome CDS411970 1308 - 0.502294
NA cbdbA675 putative DNA processing protein DprAchromosome CDS555783 1152 - 0.489583
NA cbdbB31 transposase IS3/IS911-family, orfAchromosome CDS1173656 279 + 0.501792
cas1 cbdbA1518 CRISPR-associated protein Cas1chromosome CDS1203162 930 - 0.516129
comeA cbdbA31 putative competence protein ComEAchromosome CDS23434 654 - 0.464832
dinB cbdbA12 DNA polymerase IVchromosome CDS12474 1173 - 0.514067
dnaA cbdbA1 chromosomal replication initiator protein DnaAchromosome CDS261 1335 + 0.494382
dnaB cbdbA514 replicative DNA helicasechromosome CDS414010 1377 - 0.498184
dnaE cbdbA1436 DNA polymerase III, alpha subunitchromosome CDS1131463 3513 - 0.498719
dnaG cbdbA527 DNA primasechromosome CDS428261 1767 - 0.486701
dnaN cbdbA1145 DNA polymerase III, beta subunitchromosome CDS933858 1137 + 0.501319
dnaX cbdbA563 putative DNA polymerase III, gamma and tau subunitschromosome CDS456742 1713 - 0.477525
gyrA cbdbA1728 DNA gyrase, A subunitchromosome CDS1384559 2430 - 0.503704
gyrB cbdbA4 DNA gyrase, subunit Bchromosome CDS3884 1929 - 0.509072
holA cbdbA60 DNA polymerase III delta subunit-related proteinchromosome CDS39161 1035 + 0.495652
holB cbdbA509 DNA polymerase III, delta prime subunitchromosome CDS409522 1032 + 0.44186
ligA cbdbA577 DNA ligase, NAD-dependentchromosome CDS466695 2034 - 0.499508
mfd cbdbA1211 transcription-repair coupling factorchromosome CDS975541 3447 - 0.501305
mutL cbdbA1110 DNA mismatch repair protein, MutLchromosome CDS897330 1701 - 0.510288
mutM cbdbA1344 formamidopyrimidine-DNA glycosylasechromosome CDS1066005 813 - 0.512915
mutS cbdbA1137 DNA mismatch repair protein MutSchromosome CDS927033 2577 + 0.493597
nfi cbdbA542 endonuclease Vchromosome CDS442384 672 + 0.516369
nth cbdbA889 endonuclease IIIchromosome CDS727148 657 - 0.465753
ogt cbdbA1428 methylated-DNA-protein-cysteinemethyltransferasechromosome CDS1129482 564 + 0.526596
pcrA cbdbA1111 ATP-dependent DNA helicase PcrAchromosome CDS899129 2217 - 0.496166
polA cbdbA1348 DNA-directed DNA polymerase Ichromosome CDS1067442 2712 - 0.490044
priA cbdbA277 primosomal protein N'chromosome CDS243528 2448 - 0.511438
recA cbdbA1700 recA proteinchromosome CDS1364732 1014 + 0.497041
recG cbdbA1194 ATP-dependent DNA helicase RecGchromosome CDS963716 2223 + 0.507872
recJ cbdbA922 single-stranded-DNA-specific exonuclease RecJchromosome CDS754715 1701 + 0.494415
recN cbdbA1026 DNA repair protein RecNchromosome CDS830182 1767 + 0.47425
recO cbdbA557 recombination protein RecOchromosome CDS453110 762 - 0.471129
recR cbdbA561 recombination protein RecRchromosome CDS455797 615 - 0.492683
rnhB cbdbA756 ribonuclease HIIchromosome CDS617419 639 + 0.513302
ruvA cbdbA398 Holliday junction DNA helicase RuvAchromosome CDS340949 585 - 0.512821
ruvB cbdbA588 Holliday junction DNA helicase RuvBchromosome CDS484087 1050 + 0.499048
ruvC cbdbA399 crossover junction endodeoxyribonuclease RuvCchromosome CDS341530 504 - 0.501984
sbcD cbdbA766 nuclease SbcDchromosome CDS624829 1248 + 0.454327
ssb cbdbA1019 single-strand binding proteinchromosome CDS825313 408 - 0.514706
topA cbdbA674 DNA topoisomerase Ichromosome CDS553665 2112 - 0.467803
uvrA cbdbA521 excinuclease ABC, A subunitchromosome CDS420180 2835 + 0.508995
uvrB cbdbA397 excinuclease ABC, subunit Bchromosome CDS338909 1995 - 0.503258
uvrC cbdbA1134 excinuclease ABC, C subunitchromosome CDS923652 1824 + 0.505482
xerC cbdbA673 tyrosine recombinase XerCchromosome CDS552741 924 - 0.478355
xerD cbdbA1133 tyrosine recombinase XerDchromosome CDS922578 909 - 0.481848