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2024-05-04 11:20:18

Gene list

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COG category: Replication, recombination and repair
Organism: Idiomarina loihiensis L2TR, L2TR

Number of genes found: 165

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Idiomarina loihiensis L2TR, L2TR
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Il-IS_1, transposasechromosome CDS628889 1032 - 0.533915
NA IL2598 Predicted secreted proteinchromosome CDS2795400 552 + 0.458333
NA IL1176 3'-5' exonucleasechromosome CDS1258162 648 - 0.455247
NA IL1779 3-methyladenine DNA glycosylase homologchromosome CDS1914775 684 + 0.473684
NA IL1420 3'-5' exonuclease/DnaQ family enzymechromosome CDS1529002 747 + 0.463186
NA IL1227 Uncharacterized conserved membrane proteinchromosome CDS1320901 732 - 0.404372
NA IL2607 Predicted signaling protein with an ATPase domainchromosome CDS2803552 2238 - 0.38025
NA IL0021 Zn-finger domain associated with topoisomerase type Ichromosome CDS24344 513 + 0.506823
NA IL1956 NTP pyrophosphohydrolase, NUDIX familychromosome CDS2083830 618 - 0.449838
NA IL0638 RadC family proteinchromosome CDS693564 459 - 0.466231
NA IL2634 Predicted endonuclease containing a URI domainchromosome CDS2833469 252 + 0.47619
NA IL2204 Serine/threonine protein kinasechromosome CDS2354926 1338 + 0.488042
NA Il-IS_1, transposasechromosome CDS2431243 1032 - 0.533915
NA IL1615 Transposon related ORF, HTH transcriptional regulatorchromosome CDS1731924 288 + 0.503472
NA IL1318 Uncharacterized conserved proteinchromosome CDS1418854 798 - 0.434837
NA IL1532 IS4-like transposasechromosome CDS1646168 1326 + 0.491704
NA IL0494 Uncharacterized conserved proteinchromosome CDS519572 1707 - 0.474517
NA IL1076 IS4-like transposasechromosome CDS1161444 1326 + 0.491704
NA IL1468 ATPase involved in DNA replication initiationchromosome CDS1578029 714 - 0.464986
NA IL2087 Uncharacterized conserved proteinchromosome CDS2217941 1050 - 0.33619
NA IL2499 Uracil-DNA glycosylasechromosome CDS2676923 591 - 0.517766
NA IL1262 Uncharacterized conserved secreted proteinchromosome CDS1352048 846 + 0.425532
NA IL0292 Uncharacterized conserved proteinchromosome CDS304741 1113 + 0.451033
NA Il-IS_1, transposasechromosome CDS524214 1032 + 0.533915
NA IL1878 Mg-dependent DNase homologchromosome CDS2008794 798 - 0.478697
NA Il-IS_1, transposasechromosome CDS2638892 1032 - 0.533915
NA IL2219 Predicted endonucleasechromosome CDS2372432 435 + 0.466667
NA Il-IS_1, transposasechromosome CDS2747430 1032 - 0.533915
NA Il-IS_3, transposasechromosome CDS676210 1014 - 0.49211
NA IL1333 Mg-dependent Dnase homologchromosome CDS1435815 789 - 0.443599
NA IL1499 IS4-like transposasechromosome CDS1605722 1326 - 0.491704
NA Il-IS_2, transposasechromosome CDS1332614 1290 - 0.596899
NA Il-IS_1, transposasechromosome CDS2598921 1032 - 0.534884
NA IL1491 ATP-dependent RNA helicasechromosome CDS1598576 1119 + 0.503128
NA IL2091 Predicted membrane proteinchromosome CDS2224241 951 + 0.394322
NA IL1707 NTP pyrophosphohydrolase, NUDIX familychromosome CDS1838853 615 + 0.502439
NA IL0681 Transposon mobilization protein homologchromosome CDS736721 996 + 0.410643
NA IL1489 Uncharacterized conserved proteinchromosome CDS1597315 456 - 0.489035
NA IL1613 Superfamily I DNA/RNA helicasechromosome CDS1728654 2733 + 0.409074
NA IL0503 NTP pyrophosphohydrolase, NUDIX familychromosome CDS527852 513 + 0.518519
NA IL1806 IS4-like transposasechromosome CDS1939490 1326 - 0.491704
NA IL1403 Uncharacterized conserved secreted proteinchromosome CDS1504812 1035 + 0.451208
NA IL1631 Integrase/recombinase, XerC/XerD familychromosome CDS1742739 561 - 0.463458
NA IL0423 Predicted endonucleasechromosome CDS435483 351 - 0.441595
NA IL1626 Transposon related ORF, HTH transcriptional regulatorchromosome CDS1740881 279 + 0.437276
NA IL0636 RadC family proteinchromosome CDS692320 477 - 0.509434
NA IL1914 IS4-like transposasechromosome CDS2046612 1326 - 0.491704
NA Il-IS_2, transposasechromosome CDS690443 1290 + 0.597674
NA IL0665 Uncharacterized ATPase related to the helicase subunit of the Holliday junction resolvasechromosome CDS719218 1341 - 0.515287
NA IL0225 N6-adenine-specific methylasechromosome CDS244110 582 - 0.512028
NA Il-IS_3, transposasechromosome CDS534125 1014 - 0.49211
NA IL0646 Integrase/recombinase, XerC/XerD familychromosome CDS703511 561 - 0.470588
NA IL0323 NTP pyrophosphohydrolase, NUDIX familychromosome CDS332934 576 + 0.503472
NA IL0508 Transposase related proteinchromosome CDS533451 432 - 0.430556
NA IL2307 NUDIX family pyrophosphohydrolases containing a Zn-fingerchromosome CDS2474200 798 - 0.5
NA IL2606 Hypothetical proteinchromosome CDS2802379 1167 - 0.366752
NA Il-IS_1, transposasechromosome CDS1919712 1032 - 0.533915
NA IL2608 Site-specific DNA-methyltransferasechromosome CDS2805790 1338 - 0.401345
NA IL2319 Predicted glycosyltransferasechromosome CDS2484479 705 + 0.459574
NA Il-IS_1, transposasechromosome CDS609005 1032 + 0.533915
NA Il-IS_1, transposasechromosome CDS1779847 1032 - 0.534884
NA Il-IS_1, transposasechromosome CDS498749 1032 + 0.533915
NA Il-IS_1, transposasechromosome CDS2314608 1032 - 0.533915
NA IL2225 Uncharacterized conserved secreted proteinchromosome CDS2379072 786 + 0.517812
NA IL2054 ATP-dependent DNA ligasechromosome CDS2191543 876 + 0.480594
NA IL2567 Homolog of DinP DNA polymerase involved in DNA repairchromosome CDS2758354 1404 - 0.502849
NA Il-IS_1, transposasechromosome CDS1909338 1032 + 0.534884
ada IL0070 O6-methylguanine-DNA methyltransferasechromosome CDS72895 843 - 0.498221
alkA IL0655 3-methyladenine DNA glycosylasechromosome CDS712737 594 - 0.474747
alkB IL1249 Alkylated DNA repair proteinchromosome CDS1341443 654 - 0.46789
comEA IL1350 DNA uptake protein, DNA-bindingchromosome CDS1450853 321 - 0.445483
csgF IL0157 Curli production assembly/transport component, CsgFchromosome CDS165980 384 - 0.440104
dam IL2475 DNA adenine methylasechromosome CDS2652557 873 + 0.507446
dbpA IL1413 ATP-dependent RNA helicasechromosome CDS1516437 1425 + 0.45614
deaD IL1991 ATP-dependent RNA helicasechromosome CDS2124009 1785 - 0.487955
dinG IL1832 ATP-dependent DNA helicasechromosome CDS1964016 1953 - 0.509473
dinP IL0204 DinPchromosome CDS223112 1071 - 0.487395
dnaA IL0001 ATPase involved in DNA replication initiationchromosome CDS362 1365 + 0.450549
dnaB IL1933 Replicative DNA helicasechromosome CDS2060012 1395 - 0.475986
dnaE_1 IL1689 DNA polymerase III alpha subunitchromosome CDS1812667 3429 - 0.468066
dnaE_2 IL2566 DNA polymerase III alpha subunitchromosome CDS2755251 3120 - 0.500641
dnaG IL2201 DNA primasechromosome CDS2351809 1746 - 0.487972
dnaN IL0002 DNA polymerase sliding clamp subunitchromosome CDS1758 1104 + 0.457428
dnaQ IL1693 DNA polymerase III, epsilon subunitchromosome CDS1821652 708 - 0.468927
dnaX IL1849 DNA polymerase III, gamma/tau subunitschromosome CDS1980104 2046 - 0.507331
fis IL2289 Factor for inversion stimulation Fis, transcriptional activatorchromosome CDS2452212 294 + 0.462585
gyrA IL1360 DNA gyrase subunit Achromosome CDS1459885 2487 - 0.465621
gyrB IL0004 DNA gyrase subunit Bchromosome CDS3954 2418 + 0.445409
hepA IL2223 Probable ATP-dependent RNA helicase HepAchromosome CDS2375711 2661 + 0.517475
himA IL1393 Bacterial nucleoid DNA-binding protein, IHF alpha subunitchromosome CDS1495951 297 - 0.451178
himD IL1354 Bacterial nucleoid DNA-binding protein, IHF beta subunitchromosome CDS1453479 282 - 0.439716
holA IL0949 DNA polymerase III, delta subunitchromosome CDS1004084 1083 + 0.478301
holB IL1335 DNA polymerase III, delta prime subunit, ATPasechromosome CDS1436996 861 - 0.483159
holC IL1949 DNA polymerase III chi subunitchromosome CDS2074566 450 + 0.513333
hrpA IL1367 Helicase, ATP-dependentchromosome CDS1468516 3930 - 0.488804
hrpB IL2247 Helicase, ATP-dependentchromosome CDS2404596 2463 - 0.526188
hupB IL1002 Bacterial nucleoid DNA-binding protein HU-betachromosome CDS1068108 273 - 0.457875
intA IL1654 Integrasechromosome CDS1769445 1218 - 0.438424
intB IL0651 Integrasechromosome CDS707635 1311 - 0.459954
intE IL0679 Integrasechromosome CDS734406 1152 - 0.424479
kdtA IL1987 3-deoxy-D-manno-octulosonic-acid transferasechromosome CDS2119021 1986 - 0.474824
lig IL1700 NAD-dependent DNA ligasechromosome CDS1827073 2013 - 0.487332
mfd IL1520 Transcription-repair coupling factor, superfamily II helicasechromosome CDS1630709 3483 + 0.492392
mutH IL0502 DNA mismatch repair proteinchromosome CDS527083 675 - 0.546667
mutL IL0331 DNA mismatch repair enzyme, ATPasechromosome CDS340035 1734 + 0.497693
mutM IL0245 Formamidopyrimidine DNA glycosylasechromosome CDS259672 813 + 0.492005
mutS IL0744 Mismatch repair ATPasechromosome CDS803208 2532 + 0.488942
mutT IL0446 7,8-dihydro-8-oxoguanine-triphosphatasechromosome CDS463354 417 + 0.470024
mutY IL1983 A/G-specific DNA glycosylasechromosome CDS2115106 1041 + 0.471662
nth IL1800 Endonuclease IIIchromosome CDS1935165 636 + 0.47327
parC IL1953 DNA topoisomerase IV subunit Achromosome CDS2079130 2244 - 0.481729
parE IL1954 DNA topoisomerase IV subunit Bchromosome CDS2081400 1893 - 0.487586
phrB_1 IL1388 Deoxyribodipyrimidine photolyasechromosome CDS1491462 1407 - 0.469083
phrB_2 IL0122 Deoxyribodipyrimidine photolyasechromosome CDS134193 1350 + 0.485185
polA IL0025 DNA polymerase Ichromosome CDS27587 2766 + 0.480839
priA IL2461 Primosomal protein A (replication factor Y), superfamily II helicasechromosome CDS2634493 2211 - 0.532791
priB IL1939 Primosomal replication protein Bchromosome CDS2064376 300 - 0.436667
priC IL1860 Primosomal replication protein Cchromosome CDS1990436 531 + 0.438795
radC IL0240 RadCchromosome CDS257090 675 + 0.524444
rdgC IL2121 DNA recombination-dependent growth factor Cchromosome CDS2258163 891 + 0.479237
recA IL0742 RecA recombinasechromosome CDS801369 1119 - 0.443253
recB IL2531 ATP-dependent exoDNAse (exonuclease V) beta subunitchromosome CDS2708693 3726 - 0.541063
recC IL2532 Exonuclease V gamma subunitchromosome CDS2712415 3468 - 0.536909
recD IL2530 ATP-dependent exoDNAse (exonuclease V), alpha subunit, superfamily I helicasechromosome CDS2706753 1944 - 0.536523
recF IL0003 Recombinational DNA repair ATPasechromosome CDS2874 1065 + 0.430986
recG IL2374 DNA helicase RecJchromosome CDS2544023 2082 - 0.532661
recJ IL0824 Single-stranded DNA-specific exonucleasechromosome CDS879826 1713 - 0.507297
recN IL0989 ATPase involved in DNA repair, RecNchromosome CDS1046605 1665 + 0.485285
recO IL0808 Recombinational DNA repair protein RecO, RecF pathwaychromosome CDS865577 705 - 0.507801
recQ IL2547 Superfamily II DNA helicase, RecQchromosome CDS2731074 1845 - 0.511653
recR IL1847 Recombinational DNA repair proteinchromosome CDS1979124 606 - 0.536304
rep IL0207 Rep helicase, a single-stranded DNA dependent ATPasechromosome CDS227522 2010 - 0.508458
rhlB IL2363 ATP-dependent RNA helicasechromosome CDS2533858 1278 + 0.5
rhlE IL1546 ATP-dependent RNA helicasechromosome CDS1664644 1251 + 0.478018
rnhA IL1694 Ribonuclease HIchromosome CDS1822411 474 + 0.481013
rnhB IL1670 Ribonuclease HIIchromosome CDS1790050 564 - 0.487589
rnt IL1802 RNase T, degrades tRNAchromosome CDS1936831 648 + 0.503086
ruvA IL1086 Holliday junction resolvasome, DNA-binding subunitchromosome CDS1170937 618 - 0.47411
ruvB IL1085 Holliday junction resolvasome, helicase subunitchromosome CDS1169908 1020 - 0.5
ruvC IL1087 Holliday junction resolvasome, endonuclease subunitchromosome CDS1171567 537 - 0.512104
sbcB IL1370 Exonuclease Ichromosome CDS1473883 1440 + 0.486806
seqA IL1472 Negative regulator of replication initiationchromosome CDS1582908 483 - 0.459627
smf IL0019 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptakechromosome CDS22857 1011 + 0.497527
srmB IL2131 ATP-dependent RNA helicasechromosome CDS2269668 1230 + 0.495935
ssb IL0356 Single-stranded DNA-binding proteinchromosome CDS373198 561 + 0.515152
tag IL0007 3-methyladenine DNA glycosylasechromosome CDS9558 600 + 0.453333
tatD IL2367 Mg-dependent DNasechromosome CDS2538856 792 - 0.488636
tnsB IL2612 Transposon Tn7 transposition protein tnsBchromosome CDS2812068 2079 - 0.440596
tnsE IL2609 Transposon Tn7 transposition transposition regulatory protein tnsEchromosome CDS2807290 1311 - 0.434783
topA IL1010 Topoisomerase IAchromosome CDS1077300 2619 - 0.479572
tra5_1 IL0050 Transposase Tra5 related proteinchromosome CDS53223 387 - 0.459948
tra5_2 IL0051 Transposase Tra5 related proteinchromosome CDS53653 345 - 0.53913
tra5_3 IL1214 Transposase Tra5 related proteinchromosome CDS1304630 1143 + 0.506562
tra5_4 IL1616 Transposase Tra5 related proteinchromosome CDS1732277 789 + 0.505703
tra5_5 IL1628 Transposase Tra5 related proteinchromosome CDS1741414 624 + 0.459936
ung IL0522 Uracil-DNA-glycosylasechromosome CDS548349 651 + 0.540707
uvrA IL0354 Excinuclease ATPase subunit, UvrAchromosome CDS368835 2826 - 0.508846
uvrB IL1789 Helicase subunit of the DNA excision repair complex, UvrBchromosome CDS1922592 2034 - 0.492134
uvrC IL0653 Nuclease subunit of the excinuclease complex, UvrCchromosome CDS710043 1839 - 0.474715
uvrD IL2551 Superfamily I DNA helicase, UvrDchromosome CDS2734880 2172 - 0.507366
vsr IL2527 DNA mismatch endonuclease, patch repair proteinchromosome CDS2702992 516 + 0.436047
xerC IL2553 Site-specific recombinase XerCchromosome CDS2737886 903 - 0.499446
xerD IL0826 Site-specific recombinasechromosome CDS882329 903 - 0.486157
xseA IL2012 Exonuclease VII, large subunitchromosome CDS2155300 1311 - 0.507246
xthA IL1451 Exonuclease IIIchromosome CDS1565872 810 + 0.464198