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2024-05-06 15:55:25

Gene list

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COG category: Replication, recombination and repair
Organism: Clostridium acetobutylicum ATCC 824, ATCC 824

Number of genes found: 181

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Clostridium acetobutylicum ATCC 824, ATCC 824
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
CAC0001 DNA replication initiator protein, ATPasechromosome CDS467 1341 + 0.313945
CAC0002 DNA polymerase III beta subunitchromosome CDS2064 1101 + 0.277929
CAC0004 RecF, ABC family ATPasechromosome CDS3447 1092 + 0.271978
CAC0006 DNA gyrase (topoisomerase II) B subunitchromosome CDS4844 1914 + 0.341693
CAC0007 DNA gyrase (topoisomerase II) A subunitchromosome CDS6783 2493 + 0.331729
CAC0084 MutT/Nudix family hydrolasechromosome CDS93048 477 + 0.33543
CAC0125 DNA-directed DNA polymerase, III chain (dnaX)chromosome CDS136415 1629 + 0.343155
CAC0127 Recombination protein (recR)chromosome CDS138573 597 + 0.361809
CAC0145 N-terminal Zn-ribbon domain and C-terminal MutT domain, YJAD orthologchromosome CDS150238 525 + 0.344762
CAC0219 Uracyl DNA glycosilasechromosome CDS243640 600 - 0.313333
CAC0222 Exodeoxyribonuclease (exoA)chromosome CDS246602 753 + 0.333333
CAC0223 Predicted N6-adenine-specific DNA methylasechromosome CDS247841 1122 + 0.341355
CAC0248 Transposon related proteinchromosome CDS278146 270 + 0.251852
CAC0285 DNA-damage repair protein, dinP/uvrX orthologchromosome CDS324603 1191 + 0.326616
CAC0300 DNA-polymerase III, gamma subunitchromosome CDS355339 945 + 0.291005
CAC0326 ATPase related to the helicase subunit of Holliday junction resolvasechromosome CDS383330 1332 - 0.343844
CAC0336 Hypothetical protein, CF-22 familychromosome CDS396432 525 + 0.262857
CAC0362 Hypothetical proteinchromosome CDS422063 408 + 0.296569
CAC0363 Deoxyinosine 3'endonucleasechromosome CDS422605 705 + 0.32766
CAC0404 Serine/threonine protein kinase fused to TPR repeats domainchromosome CDS467702 1974 + 0.306991
CAC0414 Hypothetical proteinchromosome CDS479915 981 + 0.302752
CAC0446 Hydrolase of MutT (Nudix) familychromosome CDS514560 621 + 0.310789
CAC0474 ACT domain containing transcriptional regulators, related to gcvR of E.colichromosome CDS545469 2931 + 0.313886
CAC0502 Excinuclease ABC subunit B (helicase subunit of the DNA excision repair complex)chromosome CDS575260 2001 + 0.321339
CAC0503 Excinuclease ABC subunit A (ATP-ase), (uvrA)chromosome CDS577260 2820 + 0.334043
CAC0508 Excinuclease ABC subunit Cchromosome CDS583923 1872 + 0.314103
CAC0516 DNA polimerase III, alpha chain (dnaE)chromosome CDS592466 3504 + 0.324772
CAC0588 Hypothetical proteinchromosome CDS680811 621 + 0.273752
CAC0638 Hypothetical proteinchromosome CDS742538 1854 + 0.294498
CAC0656 Predicted transposase (3' fragment)chromosome CDS762675 570 - 0.280702
CAC0657 Predicted transposase (5' fragment)chromosome CDS763280 1005 - 0.263682
CAC0689 Predicted endonuclease, gene nthchromosome CDS795266 636 + 0.334906
CAC0699 Spore photoproduct lyase, splBchromosome CDS808268 1011 + 0.312562
CAC0738 DNA polymerase III epsilon subunit (3'-5' exonuclease) containing BRCT domainchromosome CDS856676 921 + 0.312704
CAC0759 Hypothetical proteinchromosome CDS881870 627 + 0.30622
CAC0778 ATP-dependent RNA helicase, superfamily IIchromosome CDS900231 1758 + 0.319113
CAC0784 ATP-dependent RNA helicase, superfamily IIchromosome CDS906689 1125 - 0.344
CAC0900 Possible Zn-finger containing proteinchromosome CDS1029757 627 - 0.285486
CAC0934 Hypothetical proteinchromosome CDS1075823 357 - 0.291317
CAC0945 Single-stranded DNA-binding proteinchromosome CDS1085192 333 + 0.303303
CAC0978 Possible elongation subunit of DNA-dependent DNA polymerasechromosome CDS1126012 825 + 0.255758
CAC1003 Superfamily I DNA helicase (rep-like helicase)chromosome CDS1150264 2199 + 0.290587
CAC1006 MutT-like (Nudix) hydrolasechromosome CDS1154207 441 - 0.306122
CAC1097 Hypothetical proteinchromosome CDS1265336 651 - 0.274962
CAC1098 DNA polymerase I, polAchromosome CDS1266368 2616 + 0.309633
CAC1109 Hypothetical protein, CF-8 familychromosome CDS1275458 264 - 0.268939
CAC1110 Integrase/recombinase (xerC/xerD family); CF-10 familychromosome CDS1275725 1023 - 0.301075
CAC1132 Hypothetical proteinchromosome CDS1296337 1467 - 0.291752
CAC1142 ATP-dependent DNA helicase, uvrD-likechromosome CDS1307375 1830 - 0.26612
CAC1143 Exodeoxyribonuclease V, Alpha subunit, RecDchromosome CDS1309267 2181 - 0.253553
CAC1153 Hypothetical proteinchromosome CDS1318341 252 + 0.222222
CAC1155 Hypothetical proteinchromosome CDS1319107 1116 + 0.281362
CAC1170 Integrase/recombinase (xerD/xerC family)chromosome CDS1327295 900 + 0.26
CAC1172 Predicted integrase of XerC/XerD family, divergedchromosome CDS1328803 870 + 0.281609
CAC1175 Hypothetical protein, CF-35 familychromosome CDS1330513 384 + 0.283854
CAC1182 Phage related protein, YorG B.subtilis homologchromosome CDS1333603 1056 + 0.295455
CAC1185 Hypothetical proteinchromosome CDS1335834 1497 + 0.247161
CAC1192 Phage replicative DNA helicase, YorI B.subtilis homologchromosome CDS1341163 1470 + 0.285714
CAC1195 DNA ligase (NAD dependent), LigAchromosome CDS1343492 1992 + 0.291667
CAC1197 Phage toprim domain containing protein, YorJ B.subtilis homologchromosome CDS1345743 1047 + 0.298949
CAC1198 Single-stranded-DNA-specific exonuclease (recJ)chromosome CDS1346771 1647 + 0.275046
CAC1222 DNA-methyltransferase (cytosine-specific)chromosome CDS1363692 945 + 0.331217
CAC1223 DNA Polymerase III Alpha chain (dnaE)chromosome CDS1364934 3339 + 0.280024
CAC1228 Site-specific DNA recombinasechromosome CDS1370501 1635 + 0.292355
CAC1241 RadC protein orthologchromosome CDS1381336 690 + 0.308696
CAC1268 Competence ComEA proteinchromosome CDS1410899 630 + 0.306349
CAC1273 Uncharacterized protein, YQEN B.subtilis homologchromosome CDS1416308 1032 + 0.283915
CAC1299 DNA primase, DNAGchromosome CDS1441801 1791 + 0.302066
CAC1309 Hypothetical proteinchromosome CDS1439080 657 + 0.304414
CAC1310 Integrase XerD family protein (similarity only with C-term. partchromosome CDS1453279 495 - 0.260606
CAC1397 Predicted hydrolase of PHP superfamilychromosome CDS1541930 759 + 0.304348
CAC1464 UVRA-like protein, probably involved in MDR transportchromosome CDS1613639 2268 + 0.318342
CAC1493 Zn-finger DNA-binding domainchromosome CDS1639076 429 + 0.310023
CAC1494 Hypothetical protein, CF-32 familychromosome CDS1639486 615 + 0.291057
CAC1499 A/G-specific DNA glycosylasechromosome CDS1643658 648 + 0.260802
CAC1501 DNA-methyltransferase (cytosine-specific), ortholog of BSP6I Bsubtilischromosome CDS1644888 1248 + 0.293269
CAC1580 Hypothetical proteinchromosome CDS1724134 702 + 0.292023
CAC1595 Integrase/recombinase, XerC/XerD familychromosome CDS1739400 561 + 0.306595
CAC1609 Zn-finger containing proteinchromosome CDS1750942 375 - 0.304
CAC1627 DNA gyrase B subunitchromosome CDS1766134 1953 + 0.33999
CAC1628 DNA gyrase A subunitchromosome CDS1768107 2865 + 0.31274
CAC1632 Endonuclease IVchromosome CDS1773900 819 - 0.315018
CAC1639 Hypothetical protein, CF-7 familychromosome CDS1779297 900 + 0.382222
CAC1671 Predicted ATPase related to the helicase subunit of the Holliday junction resolvasechromosome CDS1814785 1266 + 0.340442
CAC1672 Rad3-related DNA helicasechromosome CDS1816050 2376 + 0.309764
CAC1680 Predicted endonuclease involved in recombinationchromosome CDS1830097 408 + 0.323529
CAC1721 Primosomal protein N', superfamily II helicasechromosome CDS1869329 2202 + 0.313352
CAC1736 RecG helicasechromosome CDS1883855 2037 + 0.308297
CAC1737 N6-adenine-specific methylasechromosome CDS1885969 567 + 0.329806
CAC1762 Ribonuclease HIIchromosome CDS1907294 765 + 0.322876
CAC1763 Predicted endonucleasechromosome CDS1908109 369 - 0.287263
CAC1784 DNA uptake proteinchromosome CDS1933037 1065 + 0.286385
CAC1785 Topoisomerase Ichromosome CDS1934132 2094 + 0.315664
CAC1815 RECA recombinase, ATPasechromosome CDS1965171 1050 + 0.33619
CAC1836 DNA mismatch repair enzyme, MutLchromosome CDS1986587 1869 - 0.302836
CAC1837 Mismatch repair protein MutS, ATPasechromosome CDS1988474 2610 - 0.309579
CAC1854 Nudix (MutT) family hydrolasechromosome CDS2006251 519 + 0.304432
CAC1865 Site-specific recombinases, DNA invertase Pin homologchromosome CDS2014259 1581 + 0.296648
CAC1872 Replication initiation protein REPchromosome CDS2019495 1089 + 0.30303
CAC1874 Hypothetical proteinchromosome CDS2020841 1035 - 0.274396
CAC1880 Hypothetical protein, CF-35 familychromosome CDS2028559 375 - 0.242667
CAC1896 Phage terminase-like protein, small subunitchromosome CDS2044051 456 - 0.322368
CAC1919 Phage related SSB-like proteinchromosome CDS2053592 402 - 0.363184
CAC1920 Zn-finger containing proteinchromosome CDS2053998 183 - 0.322404
CAC1933 DNA replication protein DnaCchromosome CDS2058383 849 - 0.336867
CAC1951 Site-specific recombinases, DNA invertase Pin homologchromosome CDS2068045 1728 + 0.293403
CAC1956 Site-specific recombinases, DNA invertase Pin homologchromosome CDS2072361 1596 + 0.27193
CAC2044 Hypothetical proteinchromosome CDS2150270 729 - 0.260631
CAC2066 Integrase/recombinase XerD familychromosome CDS2170033 879 - 0.293515
CAC2073 DNA repair protein recN, ATPasechromosome CDS2175203 1713 - 0.298891
CAC2081 Exonuclease VII small subunitchromosome CDS2183043 234 - 0.307692
CAC2082 Exonuclease VII, large subunitchromosome CDS2183305 1200 - 0.305833
CAC2204 Hypothetical proteinchromosome CDS2297859 345 - 0.278261
CAC2213 Hypothetical proteinchromosome CDS2305156 408 - 0.286765
CAC2225 Uncharacterized conserved proteinchromosome CDS2314644 1932 - 0.319358
CAC2232 SsDNA Exonuclease, RecJchromosome CDS2324966 1764 - 0.29195
CAC2247 Site-specific recombinase, DNA invertase Pin homologchromosome CDS2341792 1572 - 0.277354
CAC2262 ATP-dependent exonuclease (exonuclease V) synthesis protein AddA (helicase and exonuclease domains)chromosome CDS2360780 3759 - 0.300878
CAC2263 ATP-dependent exonuclease synthesis protein AddB (superfamily I helicase)chromosome CDS2364519 3462 - 0.303004
CAC2276 Protein related to N-terminal domain of SS-DNA-specific exonuclease RecJchromosome CDS2379140 870 - 0.297701
CAC2284 Holliday junction specific DNA helicase, subunit ruvBchromosome CDS2387336 1050 - 0.330476
CAC2285 Holliday junction specific DNA helicase, subunit ruvAchromosome CDS2388398 606 - 0.29868
CAC2340 DNA mismatch repair protein mutS, YSHD B.subtilis orthologchromosome CDS2448638 2367 - 0.347275
CAC2382 Single-strand DNA-binding protein, ssbchromosome CDS2491062 690 - 0.32029
CAC2400 Serine/threonine kinase related protein, inactivated (HRDL motif absent) (fragment)chromosome CDS2511267 534 + 0.290262
CAC2403 Predicted membrane proteinchromosome CDS2516820 4455 - 0.283277
CAC2550 Hypothetical proteinchromosome CDS2658508 963 - 0.274143
CAC2673 NAD-dependent DNA ligasechromosome CDS2789552 2010 - 0.316915
CAC2674 ATP-dependent superfamily I DNA helicase, PCRAchromosome CDS2791594 2271 - 0.316601
CAC2687 RecQ protein, superfamily II DNA helicasechromosome CDS2808658 2145 + 0.302564
CAC2707 8-oxoguanine-DNA-glycosylasechromosome CDS2830783 879 - 0.31058
CAC2731 Predicted permeasechromosome CDS2855353 2628 - 0.286149
CAC2736 ATPase involved in DNA repairchromosome CDS2861388 3492 - 0.298396
CAC2737 DNA repair exonucleasechromosome CDS2864860 1227 - 0.339853
CAC2748 ATP dependent RNA helicase DeaD, superfamily IIchromosome CDS2877184 1446 - 0.324343
CAC2813 Predicted integrase of XerC/XerD familychromosome CDS2943896 189 - 0.354497
CAC2824 N-terminal HKD family nuclease fused to DNA/RNA helicases of superfamily II,conserved in Streptomyceschromosome CDS2954604 2481 - 0.294236
CAC2828 Nudix (MutT) family hydrolase/pyrophosphatasechromosome CDS2959363 387 - 0.354005
CAC2853 Hypothetical proteinchromosome CDS2986097 1008 - 0.265873
CAC2854 ATP-dependent exoDNAse (exonuclease V), alpha subunit, RecDchromosome CDS2987112 2220 - 0.315315
CAC2900 Spore photoproduct lyase, SPL related proteinchromosome CDS3033758 1044 - 0.246169
CAC2947 Topoisomerase Bchromosome CDS3079332 2187 - 0.33562
CAC2969 3-methyladenine DNA glycosylasechromosome CDS3104266 618 - 0.34466
CAC2987 Primase-like protein, containing TOPRIM domain, YABF B.subtilis orthologchromosome CDS3124012 558 - 0.322581
CAC2989 PHP superfamily hydrolase, YABD orthologchromosome CDS3126129 762 - 0.309711
CAC2996 Superfamily II DNA/RNA helicase, SNF2 familychromosome CDS3133673 3159 - 0.281102
CAC2997 Uracil-DNA glycosylasechromosome CDS3136846 621 - 0.36876
CAC3010 ATP-dependent RNA helicase (superfamily II), YDBR B.subtilis orthologchromosome CDS3149865 1587 - 0.300567
CAC3034 MutS-like mismatch repair protein, ATPaseschromosome CDS3176362 1797 - 0.28325
CAC3036 Superfamily I DNA helicasechromosome CDS3179380 4056 - 0.311884
CAC3211 DNA binding protein HUchromosome CDS3356792 276 - 0.307971
CAC3216 Transcription-repair coupling factor, MFD (superfamily II helicase )chromosome CDS3362265 3516 - 0.317691
CAC3248 Hypothetical proteinchromosome CDS3400720 384 - 0.294271
CAC3261 Methylated DNA-protein cysteine methyltransferasechromosome CDS3411736 468 - 0.346154
CAC3303 Superfamily II DNA/RNA helicases, SNF2 familychromosome CDS3469203 3234 - 0.311379
CAC3358 Site-specific DNA methylase damchromosome CDS3536309 846 - 0.289598
CAC3366 Hypothetical proteinchromosome CDS3543132 327 - 0.238532
CAC3396 Nudix (MutT) family hydrolase, C4-type Zn-finger domain containingchromosome CDS3579835 816 - 0.333333
CAC3441 DNA/RNA helicase, SNF2chromosome CDS3631171 2850 - 0.292632
CAC3442 DNA polymerase III (alpha subunit)chromosome CDS3634208 4359 - 0.351916
CAC3468 Excinuclease ABC, subunit C (uvrC)chromosome CDS3666507 1122 - 0.289661
CAC3490 DNA gyrase inhibitory protein, GyrIchromosome CDS3687344 456 - 0.302632
CAC3492 Uncharacterized conserved proteinchromosome CDS3688741 873 - 0.294387
CAC3514 Reverse transcriptase/maturase family proteinchromosome CDS3711002 1413 - 0.326256
CAC3531 IS605/IS200-like transposasechromosome CDS3726188 474 - 0.293249
CAC3534 Site-specific modification DNA-methyltransferasechromosome CDS3727453 1716 - 0.297786
CAC3548 Uncharacterized conserved Zn-finger containing proteinchromosome CDS3744073 192 - 0.359375
CAC3563 Mismatch repair protein MutS-like ATPasechromosome CDS3761256 1734 - 0.299308
CAC3567 Topoisomerase Bchromosome CDS3766674 2130 - 0.339437
CAC3587 DNA replication protein DnaDchromosome CDS3787138 987 + 0.303951
CAC3588 DNA replication protein DnaCchromosome CDS3788111 990 + 0.261616
CAC3601 Nudix (MutT) family hydrolasechromosome CDS3802864 609 + 0.343186
CAC3715 Replicative DNA helicase, DNACchromosome CDS3920086 1329 - 0.362679
CAC3723 Single strand DNA binding protein, SSBchromosome CDS3928639 435 - 0.347126
CAP0026 Hypothetical proteinpSOL1 CDS26782 579 + 0.279793
CAP0080 Site-Specific Recombinase, XerdpSOL1 CDS84265 972 + 0.290123
CAP0081 TnpR resolvase C-terminal fragmentpSOL1 CDS85467 261 + 0.314176
CAP0093 TnpA, transposase (3' segment)pSOL1 CDS95156 2022 - 0.307616
CAP0094 TnpA, transposase (5' segment)pSOL1 CDS97187 945 - 0.25291
CAP0099 DNA mismatch repair protein, MUTS fragmentpSOL1 CDS102908 1890 - 0.316931
CAP0175 Replication protein, repApSOL1 CDS188765 1011 - 0.313551