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2024-05-17 11:48:08

Gene list

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COG category: Replication, recombination and repair
Organism: Helicobacter pylori 26695, 26695

Number of genes found: 123

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Helicobacter pylori 26695, 26695
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
HP0012 DNA primase (dnaG)RecName: Full=DNA primase; EC=2.7.7.-; chromosome CDS9911 1680 + 0.401786
HP0036 H. pylori predicted coding region HP0036SubName: Full=Uncharacterized protein; chromosome CDS35544 1005 + 0.39403
HP0050 adenine specific DNA methyltransferase (dpnA)SubName: Full=Adenine specific DNA methyltransferase (DpnA); SubName: Full=Adenine-specific DNA methyltransferase; chromosome CDS49335 699 - 0.393419
HP0051 cytosine specific DNA methyltransferase (DDEM)RecName: Full=Cytosine-specific methyltransferase; EC=2.1.1.37; chromosome CDS50030 1068 - 0.388577
HP0054 adenine/cytosine DNA methyltransferaseRecName: Full=Cytosine-specific methyltransferase; EC=2.1.1.37; chromosome CDS53715 2472 - 0.329288
HP0062 H. pylori predicted coding region HP0062SubName: Full=Uncharacterized protein; chromosome CDS67039 261 + 0.394636
HP0065 H. pylori predicted coding region HP0065SubName: Full=Uncharacterized protein; chromosome CDS69191 354 + 0.355932
HP0092 type II restriction enzyme M protein (hsdM)SubName: Full=Type II restriction enzyme M protein (HsdM); chromosome CDS98083 834 + 0.398082
HP0116 DNA topoisomerase I (topA)RecName: Full=DNA topoisomerase 1; EC=5.99.1.2; AltName: Full=DNA topoisomerase I; AltName: Full=Omega-protein; AltName: Full=Relaxing enzyme; AltName: Full=Swivelase; AltName: Full=Untwisting enzyme; chromosome CDS124658 2211 + 0.397105
HP0142 A/G-specific adenine glycosylase (mutY)SubName: Full=A/G-specific adenine glycosylase (MutY); chromosome CDS153727 987 - 0.377913
HP0153 recombinase (recA)RecName: Full=Protein RecA; AltName: Full=Recombinase A; chromosome CDS162928 1044 + 0.442529
HP0242 H. pylori predicted coding region HP0242SubName: Full=Uncharacterized protein; chromosome CDS251967 285 - 0.350877
HP0247 ATP-dependent RNA helicase, DEAD-box family (deaD)SubName: Full=ATP-dependent RNA helicase, DEAD-box family (DeaD); SubName: Full=DEAD/DEAH box helicase; chromosome CDS255585 1479 + 0.43002
HP0259 exonuclease VII, large subunit (xseA)RecName: Full=Exodeoxyribonuclease 7 large subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII large subunit; Short=Exonuclease VII large subunit; chromosome CDS268080 1263 + 0.400633
HP0260 adenine specific DNA methyltransferase (mod)SubName: Full=Adenine specific DNA methyltransferase (Mod); SubName: Full=Adenine-specific DNA methyltransferase; chromosome CDS269378 1155 - 0.322078
HP0263 adenine specific DNA methyltransferase (hpaim)SubName: Full=Adenine specific DNA methyltransferase (Hpaim); SubName: Full=Adenine-specific DNA methyltransferase; chromosome CDS271795 759 + 0.384717
HP0333 DNA processing chain A (dprA)SubName: Full=DNA processing chain A (DprA); chromosome CDS347607 813 + 0.420664
HP0334 conserved hypothetical proteinRecName: Full=Putative Holliday junction resolvase; EC=3.1.-.-; chromosome CDS348416 405 + 0.441975
HP0348 single-stranded-DNA-specific exonuclease (recJ)SubName: Full=Single-stranded-DNA specific exonuclease; SubName: Full=Single-stranded-DNA-specific exonuclease (RecJ); chromosome CDS354891 1551 - 0.398453
HP0356 H. pylori predicted coding region HP0356SubName: Full=Uncharacterized protein; chromosome CDS366226 759 + 0.347826
HP0367 H. pylori predicted coding region HP0367SubName: Full=Uncharacterized protein; chromosome CDS376074 609 - 0.367816
HP0387 primosomal protein replication factor (priA)RecName: Full=Primosomal protein N; EC=3.6.4.-; AltName: Full=ATP-dependent helicase PriA; chromosome CDS395753 1860 + 0.383333
HP0406 H. pylori predicted coding region HP0406SubName: Full=Uncharacterized protein; chromosome CDS418383 591 + 0.377327
HP0413 transposase-like protein, PS3ISSubName: Full=Transposase-like protein, PS3IS; chromosome CDS426032 807 - 0.348203
HP0414 IS200 insertion sequence from SARA17SubName: Full=IS200 insertion sequence from SARA17; chromosome CDS426876 417 + 0.388489
HP0425 H. pylori predicted coding region HP0425SubName: Full=Uncharacterized protein; chromosome CDS441185 1254 - 0.362839
HP0432 protein kinase C-like proteinSubName: Full=Protein kinase C-like protein; chromosome CDS450804 891 + 0.337823
HP0434 H. pylori predicted coding region HP0434SubName: Full=Uncharacterized protein; chromosome CDS452159 1170 + 0.307692
HP0435 H. pylori predicted coding region HP0435SubName: Full=Uncharacterized protein; chromosome CDS453399 576 + 0.347222
HP0436 H. pylori predicted coding region HP0436SubName: Full=Uncharacterized protein; chromosome CDS453958 366 + 0.352459
HP0437 IS605 transposase (tnpA)SubName: Full=IS605 transposase (TnpA); chromosome CDS454330 429 - 0.333333
HP0438 IS605 transposase (tnpB)SubName: Full=IS605 transposase (TnpB); chromosome CDS454828 1284 + 0.36838
HP0440 DNA topoisomerase I (topA)SubName: Full=DNA topoisomerase I (TopA); chromosome CDS457297 2034 - 0.331858
HP0447 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS465045 1083 + 0.374885
HP0449 H. pylori predicted coding region HP0449SubName: Full=Uncharacterized protein; chromosome CDS466757 1419 + 0.324877
HP0451 H. pylori predicted coding region HP0451RecName: Full=Putative uncharacterized protein HP_0451; chromosome CDS468417 285 + 0.361403
HP0478 adenine specific DNA methyltransferase (VSPIM)SubName: Full=Adenine specific DNA methyltransferase (VSPIM); SubName: Full=Adenine-specific DNA methyltransferase; chromosome CDS500131 1638 + 0.330281
HP0481 adenine specific DNA methyltransferase (MFOKI)SubName: Full=Adenine specific DNA methyltransferase (MFOKI); SubName: Full=Adenine-specific DNA methyltransferase; chromosome CDS504443 636 + 0.36478
HP0489 H. pylori predicted coding region HP0489SubName: Full=Uncharacterized protein; chromosome CDS515693 888 + 0.387387
HP0500 DNA polymerase III beta-subunit (dnaN)RecName: Full=DNA polymerase III subunit beta; EC=2.7.7.7; chromosome CDS526549 1125 + 0.360889
HP0501 DNA gyrase, sub B (gyrB)RecName: Full=DNA gyrase subunit B; EC=5.99.1.3; chromosome CDS527686 2322 + 0.402239
HP0507 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS533202 639 + 0.356808
HP0541 cag pathogenicity island protein (cag20)SubName: Full=Cag pathogenicity island protein (Cag20); chromosome CDS572736 1113 - 0.403414
HP0585 endonuclease III (nth)RecName: Full=Endonuclease III; EC=4.2.99.18; AltName: Full=DNA-(apurinic or apyrimidinic site) lyase; chromosome CDS615309 657 - 0.414003
HP0593 adenine specific DNA methyltransferase (mod)SubName: Full=Adenine specific DNA methyltransferase (Mod); chromosome CDS626246 1797 + 0.372287
HP0602 endonuclease IIIRecName: Full=Endonuclease III; EC=4.2.99.18; chromosome CDS638932 657 + 0.3379
HP0615 DNA ligase (lig)RecName: Full=DNA ligase; EC=6.5.1.2; AltName: Full=Polydeoxyribonucleotide synthase [NAD(+)]; chromosome CDS659069 1971 - 0.395738
HP0621 DNA mismatch repair protein (MutS)RecName: Full=Endonuclease MutS2; EC=3.1.-.-; chromosome CDS666410 2289 - 0.384884
HP0650 H. pylori predicted coding region HP0650SubName: Full=Uncharacterized protein; chromosome CDS696063 591 + 0.390863
HP0661 ribonuclease H (rnhA)RecName: Full=Ribonuclease HI; Short=RNase HI; EC=3.1.26.4; chromosome CDS709533 432 + 0.421296
HP0664 H. pylori predicted coding region HP0664RecName: Full=UPF0763 protein HP_0664; chromosome CDS711827 516 + 0.333333
HP0675 integrase/recombinase (xerC)SubName: Full=Integrase-recombinase protein; SubName: Full=Integrase/recombinase (XerC); chromosome CDS725498 1089 + 0.382002
HP0676 methylated-DNA--protein-cysteine methyltransferase (dat1)SubName: Full=Methylated-DNA--protein-cysteine methyltransferase; SubName: Full=Methylated-DNA--protein-cysteine methyltransferase (Dat1); chromosome CDS726648 507 - 0.370809
HP0688 H. pylori predicted coding region HP0688SubName: Full=Uncharacterized protein; chromosome CDS739466 501 + 0.373253
HP0689 H. pylori predicted coding region HP0689SubName: Full=Uncharacterized protein; chromosome CDS739987 291 + 0.360825
HP0701 DNA gyrase, sub A (gyrA)RecName: Full=DNA gyrase subunit A; EC=5.99.1.3; chromosome CDS752512 2484 + 0.414654
HP0705 excinuclease ABC subunit A (uvrA)RecName: Full=UvrABC system protein A; Short=UvrA protein; AltName: Full=Excinuclease ABC subunit A; chromosome CDS757282 2808 - 0.403134
HP0717 DNA polymerase III gamma and tau subunits (dnaX)SubName: Full=DNA polymerase III gamma and tau subunits (DnaX); SubName: Full=DNA polymerase III subunits gamma and tau; EC=2.7.7.7; chromosome CDS770469 1737 - 0.388601
HP0732 H. pylori predicted coding region HP0732SubName: Full=Uncharacterized protein; chromosome CDS787387 357 - 0.355742
HP0810 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS864477 603 - 0.349917
HP0821 excinuclease ABC subunit C (uvrC)RecName: Full=UvrABC system protein C; Short=Protein UvrC; AltName: Full=Excinuclease ABC subunit C; chromosome CDS873393 1785 + 0.378711
HP0823 conserved hypothetical proteinRecName: Full=UPF0102 protein HP_0823; chromosome CDS876454 345 + 0.344928
HP0835 histone-like DNA-binding protein HU (hup)RecName: Full=DNA-binding protein HU; chromosome CDS887585 285 + 0.403509
HP0868 H. pylori predicted coding region HP0868SubName: Full=Uncharacterized protein; chromosome CDS919540 462 - 0.344156
HP0877 Holliday junction endodeoxyribonuclease (ruvC)RecName: Full=Crossover junction endodeoxyribonuclease RuvC; EC=3.1.22.4; AltName: Full=Holliday junction nuclease RuvC; AltName: Full=Holliday junction resolvase RuvC; chromosome CDS929787 474 - 0.424051
HP0883 Holliday junction DNA helicase (ruvA)RecName: Full=Holliday junction ATP-dependent DNA helicase RuvA; EC=3.6.4.12; chromosome CDS932818 552 - 0.422101
HP0893 H. pylori predicted coding region HP0893SubName: Full=Uncharacterized protein; chromosome CDS945977 288 - 0.340278
HP0895 H. pylori predicted coding region HP0895SubName: Full=Uncharacterized protein; chromosome CDS946592 378 - 0.328042
HP0911 rep helicase, single-stranded DNA-dependent ATPase (rep)SubName: Full=Rep helicase, single-stranded DNA-dependent ATPase (Rep); chromosome CDS962631 2028 + 0.398915
HP0925 recombinational DNA repair protein (recR)RecName: Full=Recombination protein RecR; chromosome CDS988604 582 + 0.371134
HP0964 H. pylori predicted coding region HP0964SubName: Full=Uncharacterized protein; chromosome CDS1022249 1092 - 0.389194
HP0973 H. pylori predicted coding region HP0973SubName: Full=Uncharacterized protein; chromosome CDS1034745 1062 + 0.39548
HP0981 exonuclease VII-like protein (xseA)SubName: Full=Exonuclease VII-like protein (XseA); chromosome CDS1044772 366 + 0.398907
HP0988 IS605 transposase (tnpA)SubName: Full=IS605 transposase (TnpA); chromosome CDS1051052 429 - 0.333333
HP0989 IS605 transposase (tnpB)SubName: Full=IS605 transposase (TnpB); chromosome CDS1051550 1284 + 0.367601
HP0995 integrase/recombinase (xerD)SubName: Full=Integrase/recombinase (XerD); chromosome CDS1056158 1068 - 0.315543
HP0997 IS605 transposase (tnpB)SubName: Full=IS605 transposase (TnpB); chromosome CDS1060324 1284 - 0.36838
HP0998 IS605 transposase (tnpA)SubName: Full=IS605 transposase (TnpA); chromosome CDS1061677 429 + 0.333333
HP1008 IS200 insertion sequence from SARA17SubName: Full=IS200 insertion sequence from SARA17; chromosome CDS1069967 417 + 0.388489
HP1009 site-specific recombinaseSubName: Full=Site-specific recombinase; chromosome CDS1070508 561 - 0.283422
HP1022 H. pylori predicted coding region HP1022SubName: Full=5-3 exonuclease; SubName: Full=Uncharacterized protein; chromosome CDS1085284 837 + 0.377539
HP1026 conserved hypothetical helicase-like proteinSubName: Full=Conserved hypothetical helicase-like protein; SubName: Full=Recombination factor protein RarA; chromosome CDS1088877 1176 + 0.411565
HP1059 Holliday junction DNA helicase (ruvB)RecName: Full=Holliday junction ATP-dependent DNA helicase RuvB; EC=3.6.4.12; chromosome CDS1120723 1011 + 0.41543
HP1081 H. pylori predicted coding region HP1081SubName: Full=Uncharacterized protein; chromosome CDS1139469 624 - 0.376603
HP1089 H. pylori predicted coding region HP1089SubName: Full=Uncharacterized protein; chromosome CDS1148516 2337 + 0.350877
HP1095 IS605 transposase (tnpB)SubName: Full=IS605 transposase (TnpB); chromosome CDS1156724 1284 - 0.36838
HP1096 IS605 transposase (tnpA)SubName: Full=IS605 transposase (TnpA); chromosome CDS1158077 429 + 0.333333
HP1114 excinuclease ABC subunit B (uvrB)RecName: Full=UvrABC system protein B; Short=Protein UvrB; AltName: Full=Excinuclease ABC subunit B; chromosome CDS1175638 1977 - 0.407688
HP1121 cytosine specific DNA methyltransferase (BSP6IM)RecName: Full=Cytosine-specific methyltransferase; EC=2.1.1.37; chromosome CDS1187005 939 - 0.362087
HP1146 H. pylori predicted coding region HP1146SubName: Full=Uncharacterized protein; chromosome CDS1210202 510 - 0.360784
HP1208 ulcer associated adenine specific DNA methyltransferaseSubName: Full=Adenine-specific DNA-methyltransferase; SubName: Full=Ulcer associated adenine specific DNA methyltransferase; chromosome CDS1285193 990 - 0.370707
HP1228 invasion protein (invA)RecName: Full=RNA pyrophosphohydrolase; EC=3.6.1.-; AltName: Full=(Di)nucleoside polyphosphate hydrolase; chromosome CDS1303120 468 + 0.425214
HP1231 DNA polymerase III delta prime subunit (holB)SubName: Full=DNA polymerase III delta prime subunit (HolB); SubName: Full=DNA polymerase III subunit delta; EC=2.7.7.7; chromosome CDS1305342 657 + 0.368341
HP1245 single-strand DNA-binding protein (ssb)RecName: Full=Single-stranded DNA-binding protein; Short=SSB; chromosome CDS1320618 540 - 0.433333
HP1247 H. pylori predicted coding region HP1247RecName: Full=Protein HP_1247; chromosome CDS1321749 1023 - 0.363636
HP1323 ribonuclease HII (rnhB)RecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; chromosome CDS1383299 630 - 0.425397
HP1347 uracil-DNA glycosylase (ung)RecName: Full=Uracil-DNA glycosylase; Short=UDG; EC=3.2.2.27; chromosome CDS1407180 702 - 0.424501
HP1351 H. pylori predicted coding region HP1351SubName: Full=Uncharacterized protein; chromosome CDS1411346 873 - 0.308133
HP1352 adenine specific DNA methyltransferase (HINFIM)SubName: Full=Adenine specific DNA methyltransferase (HINFIM); SubName: Full=Adenine-specific DNA methyltransferase; chromosome CDS1412218 1080 - 0.332407
HP1362 replicative DNA helicase (dnaB)RecName: Full=Replicative DNA helicase; EC=3.6.4.12; chromosome CDS1422915 1467 - 0.407635
HP1367 type IIS restriction enzyme M1 protein (mod)SubName: Full=Type IIS restriction enzyme M1 protein (Mod); chromosome CDS1428975 783 - 0.356322
HP1368 type IIS restriction enzyme M2 protein (mod)SubName: Full=Type IIS restriction enzyme M2 protein (Mod); chromosome CDS1429744 864 - 0.365741
HP1370 type III restriction enzyme M protein (mod)SubName: Full=Adenine-specific DNA methylase; SubName: Full=Type III restriction enzyme M protein (Mod); chromosome CDS1432418 867 + 0.367935
HP1387 DNA polymerase III epsilon subunit (dnaQ)SubName: Full=DNA polymerase III epsilon subunit (DnaQ); chromosome CDS1448622 1053 + 0.396961
HP1393 DNA repair protein (recN)RecName: Full=DNA repair protein RecN; AltName: Full=Recombination protein N; chromosome CDS1453376 1575 - 0.39746
HP1410 H. pylori predicted coding region HP1410SubName: Full=Uncharacterized protein; chromosome CDS1479704 1185 + 0.363713
HP1438 conserved hypothetical lipoproteinSubName: Full=Conserved hypothetical lipoprotein; SubName: Full=Lipoprotein; chromosome CDS1509160 1017 + 0.347099
HP1460 DNA polymerase III alpha-subunit (dnaE)RecName: Full=DNA polymerase III subunit alpha; EC=2.7.7.7; chromosome CDS1528911 3636 - 0.414191
HP1470 DNA polymerase I (polA)RecName: Full=DNA polymerase I; Short=POL I; EC=2.7.7.7; chromosome CDS1540697 2679 - 0.387458
HP1478 DNA helicase II (uvrD)SubName: Full=DNA helicase II (UvrD); chromosome CDS1549611 2049 - 0.402147
HP1482 H. pylori predicted coding region HP1482RecName: Full=Exodeoxyribonuclease 7 small subunit; EC=3.1.11.6; AltName: Full=Exodeoxyribonuclease VII small subunit; Short=Exonuclease VII small subunit; chromosome CDS1556249 261 - 0.367816
HP1499 H. pylori predicted coding region HP1499SubName: Full=Uncharacterized protein; chromosome CDS1571852 819 + 0.321123
HP1518 H. pylori predicted coding region HP1518SubName: Full=Uncharacterized protein; chromosome CDS1594490 288 - 0.298611
HP1520 H. pylori predicted coding region HP1520SubName: Full=Uncharacterized protein; chromosome CDS1595770 1293 - 0.264501
HP1523 DNA recombinase (recG)RecName: Full=ATP-dependent DNA helicase RecG; EC=3.6.4.12; chromosome CDS1602088 1872 - 0.379274
HP1526 exodeoxyribonuclease (lexA)SubName: Full=Exodeoxyribonuclease (LexA); SubName: Full=Exodeoxyribonuclease III; chromosome CDS1605024 753 - 0.378486
HP1527 H. pylori predicted coding region HP1527SubName: Full=Uncharacterized protein; chromosome CDS1605956 1440 - 0.388889
HP1529 chromosomal replication initiator protein (dnaA)RecName: Full=Chromosomal replication initiator protein DnaA; chromosome CDS1607624 1374 - 0.402475
HP1534 IS605 transposase (tnpB)SubName: Full=IS605 transposase (TnpB); chromosome CDS1613001 1284 - 0.367601
HP1535 IS605 transposase (tnpA)SubName: Full=IS605 transposase (TnpA); chromosome CDS1614354 429 + 0.333333
HP1541 transcription-repair coupling factor (trcF)RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS1618609 3000 - 0.400333
HP1553 helicaseSubName: Full=Helicase; SubName: Full=Recombination protein RecB; chromosome CDS1632600 2838 - 0.385483
HP1573 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1653857 765 - 0.39085