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2024-05-14 19:28:43

Gene list

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COG category: Transcription
Genomic element: chromosome

Number of genes found: 214

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Saccharophagus degradans 2-40, 2-40
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Sde_0647 putative ATP-dependent RNA helicase DbpAchromosome CDS816509 1395 + 0.475986
NA Sde_0924 DNA-directed RNA polymerasechromosome CDS1187680 4086 + 0.459129
NA Sde_1934 putative transcriptional regulator, MerR familychromosome CDS2438926 429 + 0.494172
NA Sde_3616 GGDEFchromosome CDS4587433 375 - 0.557333
NA Sde_0799 sigma-24 (FecI-like)chromosome CDS1042885 819 - 0.515263
NA Sde_0802 AraC-type DNA-binding domain-containing proteins-likechromosome CDS1046281 1146 - 0.400524
NA Sde_3042 transcriptional regulator, LacI familychromosome CDS3889329 1029 - 0.48688
NA Sde_0249 sigma-24 (FecI-like)chromosome CDS313116 558 + 0.492832
NA Sde_3265 regulatory protein, LysRchromosome CDS4165711 891 + 0.418631
NA Sde_2051 3-isopropylmalate dehydrogenasechromosome CDS2630516 417 + 0.458034
NA Sde_0984 glucose/galactose transporterchromosome CDS1257131 990 + 0.455556
NA Sde_3558 putative cold-shock DNA-binding domain proteinchromosome CDS4519064 210 - 0.42381
NA Sde_1926 hypothetical proteinchromosome CDS2429001 249 + 0.502008
NA Sde_1270 Gamma-glutamyltranspeptidasechromosome CDS1627630 708 + 0.463277
NA Sde_0583 response regulator receiver domain protein (CheY-like)chromosome CDS722139 696 - 0.494253
NA Sde_1667 CBSchromosome CDS2135028 975 + 0.475897
NA Sde_3110 response regulator receiver domain protein (CheY-like)chromosome CDS3972312 1194 - 0.436348
NA Sde_1680 RNA polymerase associated protein-likechromosome CDS2147280 2625 + 0.462857
NA Sde_1188 transcriptional regulator, MarR familychromosome CDS1533827 504 - 0.472222
NA Sde_3544 General secretion pathway protein Gchromosome CDS4502505 423 - 0.49409
NA Sde_1391 AraC-type DNA-binding domain-containing proteins-likechromosome CDS1796779 1140 + 0.407895
NA Sde_3955 putative transcriptional regulatorchromosome CDS4984084 936 + 0.489316
NA Sde_0095 sigma-24 (FecI-like)chromosome CDS115035 561 - 0.516934
NA Sde_3179 response regulator receiver domain protein (CheY-like)chromosome CDS4054172 1524 + 0.504593
NA Sde_3838 response regulator receiver domain protein (CheY-like)chromosome CDS4838000 705 + 0.49078
NA Sde_2643 Exonucleasechromosome CDS3342625 621 + 0.42351
NA Sde_1673 acyltransferase-likechromosome CDS2140537 963 - 0.425753
NA Sde_2243 Ribonuclease IIIchromosome CDS2850509 681 - 0.472834
NA Sde_2179 Flagellar basal-body rod protein FlgCchromosome CDS2772235 1728 - 0.438657
NA Sde_0379 putative transcriptional regulator, XRE familychromosome CDS467619 555 - 0.43964
NA Sde_0823 sigma-24 (FecI-like)chromosome CDS1072004 600 + 0.495
NA Sde_2409 putative transcriptional regulatorchromosome CDS3051519 858 - 0.469697
NA Sde_2639 Protein of unknown function UPF0031chromosome CDS3338281 891 - 0.497194
NA Sde_3781 regulatory protein, ArsRchromosome CDS4781783 333 - 0.513514
NA Sde_1661 Outer membrane lipoprotein carrier protein LolAchromosome CDS2129078 1002 + 0.46507
NA Sde_3962 fructokinaseschromosome CDS4992676 891 - 0.436588
NA Sde_3500 Band 7 proteinchromosome CDS4455673 744 - 0.420699
NA Sde_3059 transcriptional regulator, GntR family/aminotransferase, class Ichromosome CDS3911426 1422 + 0.522503
NA Sde_2487 transcriptional regulator KdgRchromosome CDS3139393 777 - 0.499357
NA Sde_1054 Exoribonuclease IIchromosome CDS1353057 2814 + 0.496446
NA Sde_0290 response regulator receiver domain protein (CheY-like)chromosome CDS360958 711 + 0.43038
NA Sde_3805 response regulator receiver domain protein (CheY-like)chromosome CDS4805169 1320 - 0.432576
NA Sde_1016 response regulator receiver domain protein (CheY-like)chromosome CDS1299140 693 - 0.515152
NA Sde_2724 response regulator receiver domain protein (CheY-like)chromosome CDS3452170 693 + 0.46176
NA Sde_0706 hypothetical proteinchromosome CDS916345 303 - 0.40264
NA Sde_3422 response regulator receiver domain protein (CheY-like)chromosome CDS4355902 876 - 0.449772
NA Sde_3808 AraC-type DNA-binding domain-containing proteins-likechromosome CDS4809169 1134 + 0.440035
NA Sde_1412 rrf2 family proteinchromosome CDS1830665 495 + 0.50101
NA Sde_2495 AraC-type DNA-binding domain-containing proteins-likechromosome CDS3153784 1140 - 0.409649
NA Sde_3290 transcriptional regulatorchromosome CDS4201633 1350 + 0.482222
NA Sde_0637 metal dependent phosphohydrolasechromosome CDS805502 882 - 0.511338
NA Sde_0093 hypothetical proteinchromosome CDS114131 369 - 0.509485
NA Sde_3697 GTP diphosphokinasechromosome CDS4681509 2109 + 0.492651
NA Sde_3594 CheW proteinchromosome CDS4553419 855 - 0.472515
NA Sde_3745 putative transcriptional regulatorchromosome CDS4744633 915 + 0.534426
NA Sde_1787 Repressor lexAchromosome CDS2279267 606 - 0.452145
NA Sde_3127 transcriptional regulator, GntR familychromosome CDS4000789 687 - 0.47016
NA Sde_2087 putative transcriptional regulatorchromosome CDS2671104 900 + 0.471111
NA Sde_0804 transcriptional regulator, GntR familychromosome CDS1049520 723 + 0.482711
NA Sde_2540 2-oxo-acid dehydrogenase E1 component homodimeric typechromosome CDS3217671 924 + 0.453463
NA Sde_3153 AraC-type DNA-binding domain-containing proteins-likechromosome CDS4029857 1095 + 0.450228
NA Sde_2388 sigma-24 (FecI-like)chromosome CDS3027753 558 + 0.449821
NA Sde_2040 hypothetical proteinchromosome CDS2567706 303 - 0.524752
NA Sde_3287 transcriptional regulator, GntR familychromosome CDS4199547 771 + 0.512322
NA Sde_3674 putative transcriptional regulator, TetR familychromosome CDS4656948 600 - 0.451667
NA Sde_3586 Helix-turn-helix, AraC typechromosome CDS4546217 465 + 0.458065
NA Sde_0591 transcriptional regulator, LacI familychromosome CDS736120 1035 + 0.505314
NA Sde_3601 response regulator receiver domain protein (CheY-like)chromosome CDS4561943 837 - 0.517324
NA Sde_0713 Ribulose-phosphate 3-epimerasechromosome CDS922165 246 + 0.434959
NA Sde_0224 urease accessory protein UreGchromosome CDS284061 624 + 0.429487
NA Sde_1509 DNA topoisomerase IIIchromosome CDS1948021 1197 + 0.455305
NA Sde_3322 putative sigma-70 factor, ECF subfamilychromosome CDS4240777 1263 - 0.498021
NA Sde_0324 conserved hypothetical proteinchromosome CDS403488 1152 + 0.435764
NA Sde_3619 histidine kinasechromosome CDS4592829 879 - 0.506257
NA Sde_1721 putative transcriptional regulatorchromosome CDS2194316 1059 + 0.480642
NA Sde_3459 protein of unknown function DUF193chromosome CDS4399960 555 - 0.506306
NA Sde_3885 putative transcriptional regulator, TetR familychromosome CDS4903081 729 + 0.440329
NA Sde_0480 response regulator receiver domain protein (CheY-like)chromosome CDS592109 798 + 0.473684
NA Sde_1320 putative transcriptional regulator, TetR familychromosome CDS1714290 600 + 0.501667
NA Sde_2292 transcriptional regulator, ArsR familychromosome CDS2918100 300 + 0.403333
NA Sde_0439 transketolasechromosome CDS542084 441 + 0.380952
NA Sde_2054 response regulator receiver domain protein (CheY-like)chromosome CDS2634389 597 - 0.480737
NA Sde_3034 ATP-dependent RNA helicase DeaDchromosome CDS3875326 1788 + 0.501119
NA Sde_3900 response regulator receiver domain protein (CheY-like)chromosome CDS4919225 786 - 0.451654
NA Sde_3613 AraC-type DNA-binding domain-containing proteins-likechromosome CDS4583854 1158 - 0.417962
NA Sde_0062 response regulator receiver domain protein (CheY-like)chromosome CDS75944 1110 - 0.435135
NA Sde_2864 conserved hypothetical proteinchromosome CDS3623442 423 + 0.371158
NA Sde_2238 GTP diphosphokinasechromosome CDS2842346 2241 - 0.465417
NA Sde_3200 Dystroglycan-type cadherin-likechromosome CDS4076735 1551 - 0.510638
NA Sde_3997 Glycyl-tRNA synthetase, alpha subunitchromosome CDS5030029 798 + 0.487469
NA Sde_0905 transcriptional regulator; GntRchromosome CDS1167555 1008 + 0.505952
NA Sde_0916 transcriptional activator, putative, Baf familychromosome CDS1181559 783 + 0.532567
NA Sde_1768 NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunitchromosome CDS2256588 684 - 0.44883
NA Sde_2709 N utilization substance protein Achromosome CDS3437188 1482 - 0.477058
NA Sde_1884 Rhodanese-likechromosome CDS2378054 1035 + 0.458937
NA Sde_1840 Gentamicin 3'-N-acetyltransferasechromosome CDS2333620 477 + 0.442348
NA Sde_1950 putative transcriptional regulator, MerR familychromosome CDS2452242 450 + 0.482222
NA Sde_3707 transcriptional regulator, PaiB-likechromosome CDS4691844 609 + 0.438424
NA Sde_2870 putative transcriptional regulator, CadCchromosome CDS3631790 1278 + 0.449139
NA Sde_1796 transcription-repair coupling protein Mfdchromosome CDS2286400 3462 - 0.453495
NA Sde_3957 transcriptional regulator, LysR familychromosome CDS4986250 915 + 0.48306
NA Sde_2296 response regulator receiver domain protein (CheY-like)chromosome CDS2920726 669 + 0.4858
NA Sde_1647 sigma-24 (FecI-like)chromosome CDS2112497 1626 - 0.48647
NA Sde_0578 acetyltransferase-likechromosome CDS714700 504 + 0.448413
NA Sde_2274 AraC-type DNA-binding domain-containing proteins-likechromosome CDS2891363 1179 - 0.421544
NA Sde_2365 sigma-24 (FecI-like)chromosome CDS2994179 567 + 0.495591
NA Sde_1235 GreA/GreB family elongation factorchromosome CDS1584289 474 + 0.451477
NA Sde_0541 conserved hypothetical proteinchromosome CDS662150 498 - 0.433735
NA Sde_0620 ATP-dependent RNA helicase RhlBchromosome CDS783386 1179 + 0.49279
NA Sde_0179 AraC-type DNA-binding domain-containing proteins-likechromosome CDS222279 1167 - 0.422451
NA Sde_3858 regulatory protein, MarRchromosome CDS4862147 1182 + 0.44247
NA Sde_3941 putative transcriptional regulator, MerR familychromosome CDS4966856 387 - 0.449612
NA Sde_3011 hypothetical proteinchromosome CDS3840756 327 - 0.373089
NA Sde_1550 Integration host factor, alpha subunitchromosome CDS1995367 1152 + 0.418403
NA Sde_2407 sigma-24 (FecI-like)chromosome CDS3050122 540 - 0.511111
NA Sde_3656 transcription termination factor Rhochromosome CDS4636973 1260 + 0.48254
NA Sde_0554 TonB-dependent receptorchromosome CDS674897 705 + 0.489362
NA Sde_2183 Transcriptional regulators-likechromosome CDS2778097 1692 + 0.422577
NA Sde_3440 response regulator receiver domain protein (CheY-like)chromosome CDS4379873 741 - 0.454791
NA Sde_2769 Phosphoribosylaminoimidazole carboxylase, ATPase subunitchromosome CDS3502323 894 + 0.5
NA Sde_3429 transcriptional regulator, LysR familychromosome CDS4367048 939 - 0.445154
NA Sde_0954 1,4-alpha-glucan branching enzymechromosome CDS1238684 768 - 0.532552
NA Sde_3661 putative acetyltransferasechromosome CDS4642714 441 + 0.462585
NA Sde_2928 AraC-type DNA-binding domain-containing proteins-likechromosome CDS3717738 1173 + 0.425405
NA Sde_0506 transcriptional regulatorchromosome CDS619329 999 - 0.488488
NA Sde_3441 putative acetyltransferasechromosome CDS4380686 528 - 0.488636
NA Sde_1229 conserved hypothetical proteinchromosome CDS1576904 564 - 0.448582
NA Sde_0657 transcriptional regulator, LysR familychromosome CDS834206 894 - 0.475392
NA Sde_0180 AraC-type DNA-binding domain-containing proteins-likechromosome CDS223457 1137 - 0.368514
NA Sde_2781 putative transcriptional regulator, TetR familychromosome CDS3514112 621 - 0.47343
NA Sde_3717 ATP-dependent DNA helicase RecGchromosome CDS4703452 2088 - 0.538793
NA Sde_1838 Cytochrome c-type biogenesis protein CcmFchromosome CDS2332599 315 - 0.444444
NA Sde_2875 transcriptional regulator, LysR familychromosome CDS3642567 870 - 0.497701
NA Sde_2446 response regulator receiver domain protein (CheY-like)chromosome CDS3091329 675 + 0.417778
NA Sde_1789 putative transcriptional regulator, TetR familychromosome CDS2280758 633 + 0.462875
NA Sde_3960 transcriptional regulator, LacI familychromosome CDS4990506 1023 + 0.468231
NA Sde_1924 putative transcriptional regulator, TetR familychromosome CDS2425862 633 - 0.442338
NA Sde_2319 conserved hypothetical proteinchromosome CDS2946128 444 - 0.407658
NA Sde_1948 response regulator receiver domain protein (CheY-like)chromosome CDS2450044 681 + 0.521292
NA Sde_2804 regulatory protein, LysRchromosome CDS3539029 942 + 0.483015
NA Sde_3733 response regulator receiver domain protein (CheY-like)chromosome CDS4734056 750 + 0.428
NA Sde_3525 Cold shock proteinchromosome CDS4479410 363 - 0.451791
NA Sde_1442 sigma-24 (FecI-like)chromosome CDS1863304 507 + 0.404339
NA Sde_3333 hypothetical proteinchromosome CDS4262085 528 - 0.511364
NA Sde_1602 HI0933-like proteinchromosome CDS2057819 993 - 0.452165
NA Sde_1794 putative cold-shock DNA-binding domain proteinchromosome CDS2285042 228 + 0.425439
NA Sde_2181 MCP methyltransferase, CheR-typechromosome CDS2774621 1347 + 0.429844
NA Sde_1961 putative transcriptional regulator, MerR familychromosome CDS2465852 405 + 0.488889
NA Sde_1120 Exoribonuclease IIchromosome CDS1450940 1941 - 0.486862
NA Sde_3820 response regulator receiver domain protein (CheY-like)chromosome CDS4820998 618 - 0.47411
NA Sde_3118 response regulator receiver domain protein (CheY-like)chromosome CDS3983005 1692 + 0.428487
NA Sde_1189 L-2,4-diaminobutyric acid acetyltransferasechromosome CDS1534736 522 + 0.5
NA Sde_3760 putative cold-shock DNA-binding domain proteinchromosome CDS4759221 210 - 0.419048
NA Sde_3025 Phenazine biosynthesis PhzC/PhzF proteinchromosome CDS3864377 1173 - 0.432225
NA Sde_1313 putative acetyltransferasechromosome CDS1704205 492 + 0.422764
NA Sde_1396 transcriptional regulatorchromosome CDS1808683 999 + 0.469469
NA Sde_0293 putative transcriptional regulator, TetR familychromosome CDS363965 612 + 0.52451
NA Sde_2251 sigma-24 (FecI-like)chromosome CDS2858569 582 - 0.45189
NA Sde_0686 Ribosomal protein S21chromosome CDS874343 1005 + 0.479602
NA Sde_3891 hypothetical proteinchromosome CDS4911329 453 + 0.456954
NA Sde_3668 response regulator receiver domain protein (CheY-like)chromosome CDS4650532 732 - 0.504098
NA Sde_0919 TonB-dependent receptorchromosome CDS1184379 534 + 0.464419
NA Sde_0297 sigma-24 (FecI-like)chromosome CDS368829 567 + 0.520282
NA Sde_2471 sigma-24 (FecI-like)chromosome CDS3121856 627 + 0.457735
NA Sde_3230 regulatory protein, LysRchromosome CDS4103364 897 + 0.483835
NA Sde_2491 Quinolinate synthetase Achromosome CDS3147486 1158 + 0.420553
NA Sde_4009 ParB-like partition proteinchromosome CDS5048083 915 - 0.492896
NA Sde_3718 PhoUchromosome CDS4705546 927 - 0.532902
NA Sde_1505 Rhs element Vgr proteinchromosome CDS1939262 813 + 0.419434
NA Sde_2727 GreA/GreB family elongation factorchromosome CDS3453893 483 - 0.445135
NA Sde_3353 response regulator receiver domain protein (CheY-like)chromosome CDS4280331 678 + 0.486726
NA Sde_1604 putative transcriptional regulator, XRE familychromosome CDS2061024 528 + 0.528409
NA Sde_3953 AraC-family transcriptional regulatorchromosome CDS4982375 864 + 0.46875
NA Sde_1258 ATPasechromosome CDS1610690 768 - 0.509115
NA Sde_1571 transcriptional regulator, XRE familychromosome CDS2018239 684 - 0.453216
NA Sde_3000 response regulator receiver domain protein (CheY-like)chromosome CDS3824724 690 - 0.44058
NA Sde_0068 putative transcriptional regulator, TetR familychromosome CDS84125 582 + 0.419244
NA Sde_3711 putative ATP-dependent RNA helicasechromosome CDS4698398 1311 - 0.460717
NA Sde_2600 response regulator receiver domain protein (CheY-like)chromosome CDS3297829 678 + 0.49705
NA Sde_3817 DNA-binding proteinchromosome CDS4819612 219 - 0.465753
NA Sde_0807 methyltransferasechromosome CDS1053551 318 - 0.487421
NA Sde_2745 putative transcriptional regulatorchromosome CDS3474191 279 + 0.480287
NA Sde_3722 putative transcriptional regulator, TetR familychromosome CDS4710244 570 - 0.392982
NA Sde_0101 conserved hypothetical proteinchromosome CDS125617 441 - 0.412698
NA Sde_0361 putative transcriptional regulator, TetR familychromosome CDS447383 639 - 0.486698
NA Sde_3949 Chitinase IIchromosome CDS4978444 768 - 0.539062
NA Sde_3454 NusB proteinchromosome CDS4395974 453 - 0.459161
NA Sde_1584 putative transcriptional regulator, MerR familychromosome CDS2034505 357 + 0.487395
NA Sde_3413 conserved hypothetical proteinchromosome CDS4346599 252 - 0.456349
NA Sde_0925 DNA-directed RNA polymerasechromosome CDS1191859 4233 + 0.468226
NA Sde_2774 LysR family transcriptional regulatorchromosome CDS3506253 897 + 0.554069
NA Sde_3977 transcriptional regulatory proteinchromosome CDS5008591 948 - 0.510549
NA Sde_3828 putative cold-shock DNA-binding domain proteinchromosome CDS4827387 261 + 0.421456
NA Sde_3637 Argininosuccinate lyasechromosome CDS4615006 612 + 0.544118
NA Sde_0550 two component transcriptional regulator, winged helix familychromosome CDS671253 690 + 0.471014
NA Sde_3696 DNA-directed RNA polymerase, omega subunitchromosome CDS4681213 273 + 0.461538
NA Sde_2299 putative transcriptional regulator, AsnC familychromosome CDS2924825 471 + 0.475584
NA Sde_1314 putative transcriptional regulator, TetR familychromosome CDS1704772 675 - 0.45037
NA Sde_1092 transcriptional regulator, GntR familychromosome CDS1397334 717 - 0.48954
NA Sde_1685 putative cold-shock DNA-binding domain proteinchromosome CDS2154121 270 - 0.462963
NA Sde_0781 putative transcriptional regulator, XRE familychromosome CDS1011166 495 - 0.438384
NA Sde_2642 transcriptional activator MltRchromosome CDS3342029 330 + 0.478788
NA Sde_3703 response regulator receiver domain protein (CheY-like)chromosome CDS4688076 699 + 0.446352
NA Sde_1253 sigma factor RpoSchromosome CDS1603286 1002 + 0.471058
NA Sde_2999 response regulator receiver (CheY-like) modulated diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains)chromosome CDS3823238 1215 + 0.403292
NA Sde_0994 response regulator receiver domain protein (CheY-like)chromosome CDS1275819 666 - 0.490991
NA Sde_1909 putative cold-shock DNA-binding domain proteinchromosome CDS2411286 210 - 0.419048
NA Sde_4004 response regulator receiver domain protein (CheY-like)chromosome CDS5040116 810 - 0.439506
NA Sde_0716 putative transcriptional regulator, Fis familychromosome CDS925981 1842 - 0.509229
NA Sde_3895 sigma-24 (FecI-like)chromosome CDS4916037 492 + 0.493902
NA Sde_3031 AraC-type DNA-binding domain-containing proteins-likechromosome CDS3871493 1020 + 0.498039
NA Sde_4002 transcriptional regulator, AraC familychromosome CDS5038294 1086 + 0.43186
NA Sde_2888 AraC-type DNA-binding domain-containing proteins-likechromosome CDS3661542 861 - 0.423926
NA Sde_2164 Flagellar protein FliSchromosome CDS2756990 753 - 0.498008