Gene list
Applied filters:
COG category: Transcription
Genomic element: chromosome
Number of genes found: 115
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| Bacteriophage Sal3 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | LSL_0711 | Transcriptional regulator, MerR family | SubName: Full=Transcriptional regulator, MerR family; | chromosome | CDS | 758214 | 462 | + | 0.322511 |
| NA | LSL_0972 | Transcription regulator | SubName: Full=Transcription regulator; | chromosome | CDS | 990859 | 462 | - | 0.365801 |
| NA | LSL_0959 | Hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 981762 | 408 | - | 0.318627 |
| NA | LSL_0314 | Transcriptional regulator, MerR family | SubName: Full=Transcriptional regulator, MerR family; | chromosome | CDS | 343478 | 399 | + | 0.320802 |
| NA | LSL_0874 | Transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 899752 | 432 | + | 0.284722 |
| NA | LSL_0211 | Transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 259832 | 651 | + | 0.268817 |
| NA | LSL_1708 | Transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 1789491 | 360 | + | 0.35 |
| NA | LSL_0180 | Transcriptional regulator, LytR family | SubName: Full=Transcriptional regulator, LytR family; | chromosome | CDS | 206783 | 1083 | - | 0.354571 |
| NA | LSL_1191 | Phage transcriptional regulator, Cro/CI family | SubName: Full=Phage transcriptional regulator, Cro/CI family; | chromosome | CDS | 1230097 | 498 | - | 0.311245 |
| NA | LSL_0723 | Transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 770017 | 618 | - | 0.297735 |
| NA | LSL_1193 | Phage immunity repressor | SubName: Full=Phage immunity repressor; | chromosome | CDS | 1230943 | 381 | + | 0.278215 |
| NA | LSL_0108 | Stress-responsive transcriptional regulator PspC | SubName: Full=Stress-responsive transcriptional regulator PspC; | chromosome | CDS | 124856 | 231 | + | 0.324675 |
| NA | LSL_1008 | Transcriptional regulator, AraC family | SubName: Full=Transcriptional regulator, AraC family; | chromosome | CDS | 1025573 | 837 | + | 0.329749 |
| NA | LSL_0491 | Putative regulatory protein | RecName: Full=Transcriptional repressor NrdR; | chromosome | CDS | 540683 | 474 | + | 0.362869 |
| NA | LSL_1438 | Transcriptional regulator, RpiR family | SubName: Full=Transcriptional regulator, RpiR family; | chromosome | CDS | 1498209 | 837 | - | 0.311828 |
| NA | LSL_0222 | Transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 275988 | 648 | + | 0.294753 |
| NA | LSL_0045 | Hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 52274 | 393 | + | 0.335878 |
| NA | LSL_0752 | Phage helicase | SubName: Full=Phage helicase; | chromosome | CDS | 788674 | 1224 | + | 0.293301 |
| NA | LSL_1314 | Malolactic regulator, LysR family | SubName: Full=Malolactic regulator, LysR family; | chromosome | CDS | 1361886 | 882 | + | 0.309524 |
| NA | LSL_1581 | Transcriptional regulator, MerR family | SubName: Full=Transcriptional regulator, MerR family; | chromosome | CDS | 1663807 | 390 | + | 0.374359 |
| NA | LSL_1649 | Transcriptional regulator, Cro/CI family | SubName: Full=Transcriptional regulator, Cro/CI family; | chromosome | CDS | 1736463 | 804 | - | 0.237562 |
| NA | LSL_0552 | Glucokinase | SubName: Full=Glucokinase; EC=2.7.1.2; | chromosome | CDS | 592926 | 963 | + | 0.354102 |
| NA | LSL_1667 | Transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 1746394 | 615 | - | 0.310569 |
| NA | LSL_0205 | Two-component response regulator | SubName: Full=Two-component response regulator; | chromosome | CDS | 248688 | 690 | + | 0.32029 |
| NA | LSL_0522 | Two-component response regulator | SubName: Full=Two-component response regulator; | chromosome | CDS | 567551 | 687 | + | 0.343523 |
| NA | LSL_1263 | Transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | chromosome | CDS | 1293840 | 699 | - | 0.32475 |
| NA | LSL_0178 | Transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 204794 | 414 | + | 0.263285 |
| NA | LSL_0450 | Transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 499199 | 441 | + | 0.312925 |
| NA | LSL_1635 | Hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1721748 | 525 | - | 0.304762 |
| NA | LSL_0079 | Transcriptional regulator, MerR family | SubName: Full=Transcriptional regulator, MerR family; | chromosome | CDS | 99569 | 447 | + | 0.310962 |
| NA | LSL_0247 | Dna binding protein, phage associated | SubName: Full=Dna binding protein, phage associated; | chromosome | CDS | 296306 | 192 | + | 0.296875 |
| NA | LSL_0035 | Two-component response regulator | SubName: Full=Two-component response regulator; | chromosome | CDS | 43139 | 711 | + | 0.369902 |
| NA | LSL_1711 | Transcriptional regulator, LacI family | SubName: Full=Transcriptional regulator, LacI family; | chromosome | CDS | 1792554 | 993 | - | 0.303122 |
| NA | LSL_0674 | Transcriptional regulators, LysR family | SubName: Full=Transcriptional regulators, LysR family; | chromosome | CDS | 722513 | 888 | + | 0.307432 |
| NA | LSL_0146 | Transcriptional regulators, LysR family | SubName: Full=Transcriptional regulators, LysR family; | chromosome | CDS | 164531 | 879 | - | 0.326507 |
| NA | LSL_0612 | DNA-directed RNA polymerase omega chain | RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega; | chromosome | CDS | 652224 | 198 | + | 0.318182 |
| NA | LSL_1182 | Alkaline phosphatase synthesis two-component response regulator phoP | SubName: Full=Alkaline phosphatase synthesis two-component response regulator phoP; | chromosome | CDS | 1218867 | 702 | - | 0.316239 |
| NA | LSL_0873 | Fibronectin-binding protein / Fibrinogen-binding protein | SubName: Full=Fibronectin-binding protein / Fibrinogen-binding protein; | chromosome | CDS | 897877 | 1689 | - | 0.305506 |
| NA | LSL_1551 | Transcriptional regulator, LytR family | SubName: Full=Transcriptional regulator, LytR family; | chromosome | CDS | 1630765 | 975 | - | 0.328205 |
| NA | LSL_1688 | Transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 1769289 | 594 | - | 0.340067 |
| NA | LSL_1180 | Stress-responsive transcriptional regulator PspC | SubName: Full=Stress-responsive transcriptional regulator PspC; | chromosome | CDS | 1217131 | 339 | - | 0.286136 |
| NA | LSL_1622 | Transcriptional regulator, Cro/CI family | SubName: Full=Transcriptional regulator, Cro/CI family; | chromosome | CDS | 1707202 | 411 | - | 0.347932 |
| NA | LSL_1318 | CopAB ATPases metal-fist type repressor | SubName: Full=CopAB ATPases metal-fist type repressor; | chromosome | CDS | 1364738 | 447 | - | 0.342282 |
| NA | LSL_1640 | Transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 1728560 | 351 | + | 0.307692 |
| NA | LSL_0834 | Transcriptional regulator, DeoR family | SubName: Full=Transcriptional regulator, DeoR family; | chromosome | CDS | 852396 | 753 | + | 0.341301 |
| NA | LSL_1315 | Transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 1362833 | 435 | - | 0.296552 |
| NA | LSL_1677 | Transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 1758783 | 558 | + | 0.256272 |
| NA | LSL_0242 | cI-like repressor, phage associated | SubName: Full=CI-like repressor, phage associated; | chromosome | CDS | 293709 | 777 | - | 0.328185 |
| NA | LSL_0163 | Transcription regulator of fructose operon | SubName: Full=Transcription regulator of fructose operon; | chromosome | CDS | 187630 | 756 | + | 0.353175 |
| NA | LSL_0105 | Transcriptional regulator, PadR family | SubName: Full=Transcriptional regulator, PadR family; | chromosome | CDS | 122941 | 321 | + | 0.311526 |
| NA | LSL_1733 | Transcriptional Regulator, LysR substrate binding | SubName: Full=Transcriptional Regulator, LysR substrate binding; | chromosome | CDS | 1821643 | 879 | - | 0.290102 |
| NA | LSL_0832 | Transcriptional regulators, LysR family | SubName: Full=Transcriptional regulators, LysR family; | chromosome | CDS | 850307 | 957 | + | 0.31139 |
| NA | LSL_0812 | Transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 828491 | 348 | + | 0.344828 |
| NA | LSL_0183 | Transcriptional regulators, LysR family | SubName: Full=Transcriptional regulators, LysR family; | chromosome | CDS | 209213 | 858 | + | 0.311189 |
| NA | LSL_1646 | Transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 1733396 | 483 | - | 0.329193 |
| NA | LSL_1506 | Transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 1561811 | 312 | + | 0.326923 |
| NA | LSL_1316 | Transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 1363609 | 534 | - | 0.338951 |
| NA | LSL_0031 | Transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 38074 | 450 | + | 0.282222 |
| NA | LSL_1161 | Two-component response regulator | SubName: Full=Two-component response regulator; | chromosome | CDS | 1194978 | 720 | - | 0.323611 |
| NA | LSL_0083 | Two-component response regulator | SubName: Full=Two-component response regulator; | chromosome | CDS | 102593 | 657 | - | 0.350076 |
| NA | LSL_1207 | ComF operon protein 1 | SubName: Full=ComF operon protein 1; | chromosome | CDS | 1239115 | 1338 | - | 0.301196 |
| NA | LSL_0883 | Conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 908093 | 606 | - | 0.323432 |
| NA | LSL_0939 | Segregation and condensation protein ScpB | RecName: Full=Segregation and condensation protein B; | chromosome | CDS | 968156 | 591 | - | 0.348562 |
| NA | LSL_1682 | Transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 1764691 | 357 | + | 0.344538 |
| NA | LSL_0076 | Transcriptional regulator, DeoR family | SubName: Full=Transcriptional regulator, DeoR family; | chromosome | CDS | 94842 | 777 | + | 0.330759 |
| NA | LSL_1617 | Transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | chromosome | CDS | 1702209 | 369 | - | 0.319783 |
| NA | LSL_0742 | Phage transcriptional regulator, Cro/CI family | SubName: Full=Phage transcriptional regulator, Cro/CI family; | chromosome | CDS | 785426 | 396 | - | 0.323232 |
| NA | LSL_0413 | Transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 457759 | 336 | + | 0.321429 |
| NA | LSL_0020 | Transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 24679 | 567 | + | 0.326279 |
| NA | LSL_1338 | DNA-binding protein | SubName: Full=DNA-binding protein; | chromosome | CDS | 1388643 | 612 | - | 0.310458 |
| NA | LSL_1508 | Transcription regulator, GntR family | SubName: Full=Transcription regulator, GntR family; | chromosome | CDS | 1563310 | 726 | + | 0.300275 |
| NA | LSL_1167 | Central glycolytic genes regulator | SubName: Full=Central glycolytic genes regulator; | chromosome | CDS | 1201618 | 1029 | - | 0.392614 |
| NA | LSL_1477 | Transcriptional regulator, LytR family | SubName: Full=Transcriptional regulator, LytR family; | chromosome | CDS | 1535689 | 1137 | - | 0.343887 |
| NA | LSL_1461 | Fructokinase | SubName: Full=Fructokinase; EC=2.7.1.4; | chromosome | CDS | 1521868 | 867 | - | 0.369089 |
| NA | LSL_1275 | Transcriptional regulator | SubName: Full=Transcriptional regulator; | chromosome | CDS | 1311958 | 795 | - | 0.293082 |
| NA | LSL_1156 | Ribonuclease R 1 | RecName: Full=Ribonuclease R; Short=RNase R; EC=3.1.13.1; | chromosome | CDS | 1187766 | 2400 | - | 0.329583 |
| NA | LSL_1441 | Hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1500879 | 393 | - | 0.315522 |
| ccpA | LSL_0420 | Catabolite control protein A | SubName: Full=Catabolite control protein A; | chromosome | CDS | 463530 | 1008 | + | 0.328373 |
| cro | LSL_0250 | Cro-like protein, phage associated | SubName: Full=Cro-like protein, phage associated; | chromosome | CDS | 296879 | 192 | + | 0.296875 |
| cspC | LSL_1480 | Cold shock protein | SubName: Full=Cold shock protein; | chromosome | CDS | 1538345 | 201 | - | 0.378109 |
| cspC | LSL_1069 | Cold shock protein | SubName: Full=Cold shock protein; | chromosome | CDS | 1091569 | 210 | - | 0.328571 |
| galR | LSL_0380 | Galactose operon repressor | SubName: Full=Galactose operon repressor; | chromosome | CDS | 415063 | 999 | - | 0.326326 |
| glnR | LSL_0557 | Glutamine synthetase repressor | SubName: Full=Glutamine synthetase repressor; | chromosome | CDS | 597020 | 387 | + | 0.338501 |
| greA | LSL_0817 | Transcription elongation factor | RecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; | chromosome | CDS | 834627 | 471 | + | 0.335456 |
| greA | LSL_0121 | Transcription elongation factor | RecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; | chromosome | CDS | 138486 | 474 | - | 0.348101 |
| hrcA | LSL_0576 | Heat-inducible transcription repressor | RecName: Full=Heat-inducible transcription repressor HrcA; | chromosome | CDS | 617893 | 1053 | + | 0.332384 |
| lexA | LSL_0540 | LexA repressor | RecName: Full=LexA repressor; EC=3.4.21.88; | chromosome | CDS | 583018 | 621 | - | 0.351047 |
| malR | LSL_1283 | Maltose operon transcriptional repressor | SubName: Full=Maltose operon transcriptional repressor; | chromosome | CDS | 1322875 | 996 | - | 0.295181 |
| mfd | LSL_1360 | Transcription-repair coupling factor | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 1422969 | 3525 | - | 0.32539 |
| nusA | LSL_0569 | N utilization substance protein A | SubName: Full=N utilization substance protein A; | chromosome | CDS | 611433 | 1128 | + | 0.333333 |
| nusB | LSL_0532 | N utilization substance protein B | RecName: Full=N utilization substance protein B homolog; Short=Protein NusB; | chromosome | CDS | 576129 | 396 | + | 0.272727 |
| nusG | LSL_1241 | Transcription antitermination protein | RecName: Full=Transcription termination/antitermination protein NusG; | chromosome | CDS | 1273402 | 561 | - | 0.327986 |
| parB | LSL_1596 | Chromosome partitioning protein, DNA-binding protein | SubName: Full=Chromosome partitioning protein, DNA-binding protein; | chromosome | CDS | 1676145 | 876 | - | 0.332192 |
| parB | LSL_1598 | Chromosome partitioning protein | SubName: Full=Chromosome partitioning protein; | chromosome | CDS | 1677795 | 843 | - | 0.338078 |
| recG | LSL_0622 | ATP-dependent DNA helicase | SubName: Full=ATP-dependent DNA helicase; EC=3.6.1.-; | chromosome | CDS | 665280 | 2031 | + | 0.328902 |
| relA | LSL_0822 | GTP pyrophosphokinase | SubName: Full=GTP pyrophosphokinase; EC=2.7.6.5; | chromosome | CDS | 839012 | 2220 | + | 0.32973 |
| rho | LSL_0346 | Transcription termination factor | RecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; | chromosome | CDS | 376785 | 1284 | + | 0.350467 |
| rnc | LSL_0625 | Ribonuclease III | RecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; Short=RNase III; | chromosome | CDS | 668797 | 699 | + | 0.323319 |
| rpoA | LSL_1409 | DNA-directed RNA polymerase alpha chain | RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; | chromosome | CDS | 1482888 | 945 | - | 0.354497 |
| rpoB | LSL_0197 | DNA-directed RNA polymerase beta chain | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 235025 | 3600 | + | 0.374722 |
| rpoC | LSL_0198 | DNA-directed RNA polymerase beta' chain | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 238653 | 3666 | + | 0.382433 |
| rpoD | LSL_0909 | RNA polymerase sigma factor | RecName: Full=RNA polymerase sigma factor SigA; | chromosome | CDS | 932755 | 1119 | - | 0.362824 |
| rpoE | LSL_0341 | DNA-directed RNA polymerase delta chain | RecName: Full=Probable DNA-directed RNA polymerase subunit delta; AltName: Full=RNAP delta factor; | chromosome | CDS | 372021 | 591 | + | 0.37225 |
| scrR | LSL_0064 | Sucrose operon repressor | SubName: Full=Sucrose operon repressor; | chromosome | CDS | 79497 | 993 | - | 0.327291 |
| srmB | LSL_1286 | ATP-dependent RNA helicase | SubName: Full=ATP-dependent RNA helicase; | chromosome | CDS | 1326739 | 1281 | - | 0.330211 |
| srmB | LSL_1112 | ATP-dependent RNA helicase | SubName: Full=ATP-dependent RNA helicase; | chromosome | CDS | 1139922 | 1323 | - | 0.343915 |
| srmB | LSL_0356 | ATP-dependent RNA helicase | SubName: Full=ATP-dependent RNA helicase; | chromosome | CDS | 389363 | 1479 | + | 0.354293 |
| treR | LSL_1513 | Trehalose operon transcriptional repressor | SubName: Full=Trehalose operon transcriptional repressor; | chromosome | CDS | 1570096 | 714 | + | 0.337535 |
| troR | LSL_1481 | Iron-dependent repressor | SubName: Full=Iron-dependent repressor; | chromosome | CDS | 1538693 | 648 | - | 0.342593 |
| wecD | LSL_1336 | Acetyltransferase | SubName: Full=Acetyltransferase; EC=2.3.1.-; | chromosome | CDS | 1387947 | 369 | - | 0.322493 |
| wecD | LSL_0966 | Acetyltransferase | SubName: Full=Acetyltransferase; EC=2.3.1.-; | chromosome | CDS | 986058 | 513 | - | 0.337232 |
| wecD | LSL_1012 | Acetyltransferase, GNAT family | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 1029459 | 441 | - | 0.310658 |
| wecD | LSL_1673 | Acetyltransferase | SubName: Full=Acetyltransferase; EC=2.3.1.-; | chromosome | CDS | 1753481 | 519 | - | 0.317919 |
| wecD | LSL_0998 | Acetyltransferase, GNAT family | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 1016191 | 516 | - | 0.319767 |
| wecD | LSL_1299 | Acetyltransferase, GNAT family | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 1346071 | 483 | - | 0.341615 |
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