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Gene list

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COG category: Transcription
Genomic element: chromosome 1

Number of genes found: 178

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Rhodobacter sphaeroides 2.4.1, 2.4.1; ATCC BAA-808
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA RSP_0402 transcriptional regulator, TetR familychromosome 1 CDS2133851 591 - 0.695431
NA RSP_0186 Transcriptional regulator, TetR familychromosome 1 CDS1903171 612 + 0.658497
NA RSP_2987 probable acetyltransferasechromosome 1 CDS1678279 444 + 0.707207
NA RSP_1378 hypothetical proteinchromosome 1 CDS3156854 384 + 0.664062
NA RSP_2751 hypothetical proteinchromosome 1 CDS1401473 1176 + 0.652211
NA RSP_1138 two component transcriptional regulator, winged helix familychromosome 1 CDS2900890 699 - 0.692418
NA RSP_2201 transcriptional regulator, MerR familychromosome 1 CDS815669 381 - 0.664042
NA RSP_1888 possible acetyltransferase (GNAT) familychromosome 1 CDS485217 486 + 0.740741
NA RSP_2038 possible acetyltransferasechromosome 1 CDS633935 453 + 0.640177
NA RSP_1191 transcriptional regulator, MarR familychromosome 1 CDS2964769 444 - 0.70045
NA RSP_2965 Transcriptional regulator, LysR familychromosome 1 CDS1643757 894 - 0.696868
NA RSP_1704 Probable transcription antitermination protein NusGchromosome 1 CDS290404 534 + 0.638577
NA RSP_0991 Putative transcriptional regulator, ROK familychromosome 1 CDS2749030 1224 + 0.723856
NA RSP_1616 conserved hypothetical proteinchromosome 1 CDS215064 456 - 0.594298
NA RSP_0087 two component transcriptional regulator, LuxRchromosome 1 CDS1797908 633 + 0.624013
NA RSP_1139 transcriptional regulator, MarR familychromosome 1 CDS2901585 510 - 0.666667
NA RSP_1405 ROK family proteinchromosome 1 CDS3181832 888 + 0.73536
NA RSP_6209 hypothetical proteinchromosome 1 CDS250098 363 + 0.586777
NA RSP_1741 Possible LuxR family proteinchromosome 1 CDS322519 612 + 0.612745
NA RSP_1925 Transcriptional regulator, GntR familychromosome 1 CDS522394 669 - 0.681614
NA RSP_6137 transcriptional regulator, TetR familychromosome 1 CDS2599412 624 - 0.701923
NA RSP_0958 RAM domain proteinchromosome 1 CDS2715109 237 - 0.603376
NA RSP_0418 conserved hypothetical proteinchromosome 1 CDS2152121 411 + 0.671533
NA RSP_2730 Transcriptional regulator, ArsR familychromosome 1 CDS1380472 327 + 0.706422
NA RSP_2026 transcriptional regulator, AraC familychromosome 1 CDS624857 978 + 0.721881
NA RSP_0014 transcriptional regulator, TetR familychromosome 1 CDS1715549 618 + 0.703883
NA RSP_0613 conserved hypothetical proteinchromosome 1 CDS2351902 513 + 0.545809
NA RSP_1449 Putative transcriptional regulator of sugar metabolismchromosome 1 CDS31726 771 - 0.687419
NA RSP_0762 transcriptional regulator, XRE familychromosome 1 CDS2504287 399 - 0.696742
NA RSP_0628 conserved hypothetical proteinchromosome 1 CDS2365199 588 - 0.69898
NA RSP_1164 predicted nucleic-acid-binding proteinchromosome 1 CDS2926825 633 + 0.684044
NA RSP_6096 transcriptional regulator, LuxR familychromosome 1 CDS1835702 660 + 0.636364
NA RSP_1867 transcriptional regulator, AsnC familychromosome 1 CDS464909 459 + 0.721133
NA RSP_1790 probable transcriptional regulatorchromosome 1 CDS376484 426 - 0.713615
NA RSP_6026 putative acetyltransferasechromosome 1 CDS514055 522 - 0.714559
NA RSP_2888 Transcriptional regulatorchromosome 1 CDS1564999 435 + 0.655172
NA RSP_1663 putative transcriptional regulator, LacI familychromosome 1 CDS255570 1038 + 0.690751
NA RSP_0774 RNA binding proteinchromosome 1 CDS2515853 2322 - 0.711886
NA RSP_2652 putative Acetyltransferasechromosome 1 CDS1295580 453 - 0.708609
NA RSP_2853 Transcriptional regulator, TetR familychromosome 1 CDS1450705 642 - 0.694704
NA RSP_1297 transcriptional regulator, LysR familychromosome 1 CDS3065797 915 + 0.737705
NA RSP_0768 transcriptional regulator, LuxR familychromosome 1 CDS2510174 942 - 0.751592
NA RSP_1962 hypothetical proteinchromosome 1 CDS554720 429 + 0.554779
NA RSP_0489 GntR family transcriptional regulatorchromosome 1 CDS2223080 717 + 0.675035
NA RSP_0611 transcriptional regulator, ArsR familychromosome 1 CDS2350328 384 + 0.611979
NA RSP_0511 two component transcriptional regulator, LuxR familychromosome 1 CDS2245560 576 + 0.736111
NA RSP_2606 ArsR family Arsenical Resistance Operon Repressorchromosome 1 CDS1247875 384 - 0.669271
NA RSP_1922 Transcriptional regulator, GntR family, with aminotransferase domainchromosome 1 CDS519356 1413 + 0.754423
NA RSP_1077 transcriptional regulator, LysR familychromosome 1 CDS2833404 891 + 0.700337
NA RSP_0847 two component transcriptional regulator, winged helix familychromosome 1 CDS2597558 687 + 0.608442
NA RSP_2079 conserved hypothetical proteinchromosome 1 CDS672245 1812 + 0.725166
NA RSP_0607 sigma 24chromosome 1 CDS2347737 861 + 0.650406
NA RSP_2186 Transcriptional Regulator, MerR familychromosome 1 CDS792833 1386 - 0.702742
NA RSP_1990 Transcriptional regulator, AsnC familychromosome 1 CDS587069 432 - 0.680556
NA RSP_1660 putative ParB-like nucleasechromosome 1 CDS251971 1170 + 0.728205
NA RSP_2651 conserved hypothetical proteinchromosome 1 CDS1294180 1404 - 0.70584
NA RSP_1486 regulatory protein, TetR familychromosome 1 CDS72528 606 + 0.727723
NA RSP_1435 regulatory protein TetR familychromosome 1 CDS13839 660 - 0.642424
NA RSP_1681 two-component transcriptional regulator, winged helix familychromosome 1 CDS272514 702 + 0.643875
NA RSP_1014 sigma24chromosome 1 CDS2773458 540 + 0.733333
NA RSP_1550 regulatory proteins, IclR familychromosome 1 CDS141230 831 - 0.716005
NA RSP_0591 Cold-shock proteinchromosome 1 CDS2333138 207 + 0.637681
NA RSP_1890 Transcriptional regulator, LysR familychromosome 1 CDS486939 969 + 0.693498
NA RSP_0171 Response regulator receiver proteinchromosome 1 CDS1887444 369 - 0.666667
NA RSP_0999 conserved hypothetical proteinchromosome 1 CDS2757701 555 - 0.668468
NA RSP_6095 possible transcriptional activatorchromosome 1 CDS1835172 483 - 0.635611
NA RSP_1871 Transcriptional regulator, GntR familychromosome 1 CDS469002 636 + 0.699686
NA RSP_1952 Cold-shock DNA-binding domain proteinchromosome 1 CDS548589 234 - 0.619658
NA RSP_2200 transcriptional regulator, MerR familychromosome 1 CDS815149 399 - 0.671679
NA RSP_0722 transcriptional regulator, AsnC familychromosome 1 CDS2466831 459 - 0.655773
NA RSP_1945 Transcriptional Regulator, AsnC familychromosome 1 CDS543051 462 + 0.65368
NA RSP_0316 Transcriptional regulator, LuxR familychromosome 1 CDS2045159 642 + 0.661994
NA RSP_2889 Transcriptional regulatorchromosome 1 CDS1565459 414 - 0.671498
NA RSP_2011 putative transcription elongation factorchromosome 1 CDS612424 495 - 0.753535
NA RSP_6228 hypothetical proteinchromosome 1 CDS2165424 222 - 0.675676
NA RSP_0641 transcriptional regulator, XRE familychromosome 1 CDS2380273 636 + 0.683962
NA RSP_1607 Putative regulatory protein, GntR familychromosome 1 CDS203237 903 - 0.704319
NA RSP_0172 Predicted transcriptional regulatorschromosome 1 CDS1887974 1287 - 0.749029
NA RSP_0981 Transcriptional regulator, GntR familychromosome 1 CDS2739750 687 - 0.727802
NA RSP_1055 transcriptional regulator, LysR familychromosome 1 CDS2812669 930 + 0.691398
NA RSP_1040 transcriptional regulator, ArsR familychromosome 1 CDS2801666 363 + 0.663912
NA RSP_0878 putative acetyltransferase proteinchromosome 1 CDS2626798 486 + 0.730453
NA RSP_2236 transcriptional regulator, MarR familychromosome 1 CDS853322 468 + 0.692308
NA RSP_1441 regulatory protein, GntR familychromosome 1 CDS23029 1149 + 0.698869
NA RSP_0185 Transcriptional regulator, TetR familychromosome 1 CDS1902349 633 + 0.657188
NA RSP_1485 ATP-dependent RNA helicasechromosome 1 CDS70529 1809 - 0.726921
NA RSP_0616 transcriptional regulator, AraC familychromosome 1 CDS2353834 744 + 0.706989
NA RSP_0415 sigma-24chromosome 1 CDS2150594 594 - 0.727273
NA RSP_0443 Rrf2 family transcriptional regulatorchromosome 1 CDS2174442 468 - 0.634615
NA RSP_2081 putative acetyltransferase, GNAT familychromosome 1 CDS675541 471 - 0.690021
NA RSP_2950 Transcriptional regulator, LysR familychromosome 1 CDS1631639 894 + 0.652125
NA RSP_0394 conserved hypothetical proteinchromosome 1 CDS2123955 468 - 0.647436
NA RSP_1243 transcriptional regulator, LacI familychromosome 1 CDS3011873 1020 - 0.711765
NA RSP_2281 two-component trancriptional regulator, winged helix familychromosome 1 CDS902480 708 + 0.707627
NA RSP_1866 Transcriptional regulator, AsnC familychromosome 1 CDS464457 456 + 0.692982
NA RSP_2362 transcriptional regulator, GntR familychromosome 1 CDS989506 783 + 0.667944
NA RSP_1785 Putative transcriptional regulatory proteinchromosome 1 CDS369641 1005 - 0.728358
NA RSP_2027 transcriptional regulator, LysR familychromosome 1 CDS626074 891 - 0.725028
NA RSP_2922 Transcriptional regulator, AraC familychromosome 1 CDS1600645 1014 + 0.675542
NA RSP_2610 trancriptional regulator, MerR familychromosome 1 CDS1251470 846 - 0.739953
NA RSP_2324 transcriptional regulator, RpiR familychromosome 1 CDS947087 867 + 0.675894
NA RSP_2939 Predicted transcriptional regulator containing the HTH domainchromosome 1 CDS1619069 636 - 0.683962
NA RSP_1606 Putative regulatory protein, GntR familychromosome 1 CDS202423 702 - 0.679487
NA RSP_2425 putative CarD-like transcriptional regulatorchromosome 1 CDS1056214 510 + 0.656863
NA RSP_1272 sigma24chromosome 1 CDS3040969 585 - 0.670085
NA RSP_2075 Putative Transcriptional regulatorchromosome 1 CDS670405 351 + 0.547009
NA RSP_0752 Acetyltransferase (GNAT) familychromosome 1 CDS2495077 486 + 0.679012
NA RSP_2719 transcriptional regulator, AsnC/Lrp familychromosome 1 CDS1369671 450 + 0.7
NA RSP_2882 two component transcriptional regulator, LuxR familychromosome 1 CDS1553749 681 - 0.675477
NA RSP_1892 putative Cro/CI transcriptional regulatorchromosome 1 CDS489235 363 + 0.641873
NA RSP_0018 Putative transcriptional regulator, gntR familychromosome 1 CDS1719530 1404 - 0.722934
NA RSP_0386 Cold-shock DNA-binding domain proteinchromosome 1 CDS2119520 207 + 0.613527
NA RSP_0027 hypothetical proteinchromosome 1 CDS1728364 792 - 0.761364
NA RSP_1915 Transcriptional regulator, LysR familychromosome 1 CDS512992 924 + 0.713203
NA RSP_2346 Cold-shock DNA-binding domain proteinchromosome 1 CDS971386 543 + 0.646409
NA RSP_1472 hypothetical proteinchromosome 1 CDS57311 705 + 0.67234
NA RSP_1083 two component transcriptional regulator, winged helix familychromosome 1 CDS2841944 702 - 0.703704
NA RSP_2533 Putative transcriptional regulatorchromosome 1 CDS1175279 774 + 0.644703
ElaA RSP_1127 acetyltransferase, GNAT familychromosome 1 CDS2891670 417 - 0.70024
acoR RSP_2800 Putative AcoR, Transcriptional activator of acetoin/glycerol metabolismchromosome 1 CDS1520106 1938 + 0.724458
betI RSP_2182 transcriptional regulator, BetIchromosome 1 CDS788078 585 + 0.682051
catR RSP_0794 transcriptional regulator, LysR familychromosome 1 CDS2537318 1182 - 0.71912
cbbR RSP_1286 RuBisCO operon transcriptional regulator, CbbRchromosome 1 CDS3053558 933 + 0.695606
cerR RSP_0122 transcriptional regulator, LuxR familychromosome 1 CDS1836472 702 + 0.669516
cspA RSP_2024 Cold shock protein cspAchromosome 1 CDS624198 207 + 0.642512
ctrA RSP_2621 two component transcriptional regulator, winged helix familychromosome 1 CDS1259527 714 + 0.606443
flgM RSP_0037 Putative FlgM, negative regulator of flagellin synthesischromosome 1 CDS1742579 315 + 0.650794
flhR RSP_2591 two component transcriptional regulator, LuxR family familychromosome 1 CDS1233459 708 + 0.677966
fliA RSP_0032 sigma factor FliA (Sigma-28 group, flagellar)chromosome 1 CDS1736242 720 - 0.680556
glpR RSP_0457 probable glycerol-3-phosphate regulon repressorchromosome 1 CDS2189977 780 + 0.671795
greA RSP_1776 Transcription elongation factor greAchromosome 1 CDS360057 471 - 0.658174
hrcA RSP_1220 heat-inducible transcription repressor HrcAchromosome 1 CDS2993068 1071 - 0.664799
hutC RSP_2932 Histidine utilization repressor, gntR familychromosome 1 CDS1609892 687 - 0.732169
hypB RSP_0506 NI2+-binding GTPase protein HypBchromosome 1 CDS2240199 870 + 0.66092
kdpE RSP_1269 two component transcriptional regulator, winged helix familychromosome 1 CDS3038125 687 + 0.716157
lexA RSP_1997 LexA repressorchromosome 1 CDS596014 687 - 0.672489
lyrS RSP_0927 transcriptional regulator, LyrR familychromosome 1 CDS2675930 942 - 0.676221
metR RSP_2171 transcriptional regulator, LysR familychromosome 1 CDS775298 906 - 0.669978
mfd RSP_2850 transcription-repair coupling factor (helicase)chromosome 1 CDS1453666 3498 - 0.683533
mgpS RSP_2422 putative ATP-dependent helicase, MgpSchromosome 1 CDS1052447 2793 + 0.699606
mobC RSP_0736 MobC proteinchromosome 1 CDS2480161 591 - 0.722504
mucS RSP_0760 transcriptional regulator, MarR familychromosome 1 CDS2503434 510 - 0.617647
nifA RSP_0547 NifA transcriptional activatorchromosome 1 CDS2283761 1746 - 0.710195
nusA RSP_1163 N-utilization substance protein Achromosome 1 CDS2925203 1608 + 0.649876
nusB RSP_0755 putative N utilization substance protein Bchromosome 1 CDS2498062 468 - 0.668803
osp RSP_0869 response regulator receive proteinchromosome 1 CDS2618532 363 + 0.636364
oxyR RSP_2780 Transcriptional regulator, OxyR, LysR familychromosome 1 CDS1428501 927 + 0.735707
pdhR RSP_1034 Pyruvate dehydrogenase complex repressorchromosome 1 CDS2797903 768 + 0.671875
phoB RSP_2599 Phosphate regulon transcriptional regulator, PhoRchromosome 1 CDS1240670 693 - 0.686869
phoB RSP_0573 Response regulator receiver proteinchromosome 1 CDS2313655 390 - 0.674359
prrA RSP_1518 PrrA (RegA), Response regulator involved in oxygen regulation of photosynthesis geneschromosome 1 CDS104574 555 - 0.681081
putR RSP_1577 Proline dehydrogenase transcriptional activatorchromosome 1 CDS170014 501 + 0.672655
putR RSP_2165 transcriptional regulator, AsnC familychromosome 1 CDS767169 456 - 0.679825
recG RSP_2623N Haem peroxidasechromosome 1 CDS1262445 2088 + 0.722222
rhlE RSP_2536 ATP-dependent helicase, DEAD-boxchromosome 1 CDS1178520 1557 - 0.691073
rhlE2 RSP_0819 DEAD/DEAH box helicasechromosome 1 CDS2564430 1386 + 0.708514
rho RSP_1231 Transcription termination factor rhochromosome 1 CDS3002979 1269 - 0.628054
rnc RSP_1675 Ribonuclease IIIchromosome 1 CDS265446 690 + 0.72029
rnr RSP_1126 Exoribonuclease Rchromosome 1 CDS2889366 2259 - 0.705179
rpoA RSP_1739 RNA polymerase, alpha chainchromosome 1 CDS320724 1017 + 0.627335
rpoB RSP_1699 DNA-directed RNA polymerase, beta subunitchromosome 1 CDS293630 4134 + 0.653604
rpoC RSP_1712 RNA polymerase I subunit A,chromosome 1 CDS297845 4248 + 0.649247
rpoD RSP_0395 RNA polymerase sigma factor RpoDchromosome 1 CDS2125036 2007 - 0.649726
rpoE RSP_2681 sigma factor, RpoEchromosome 1 CDS1326905 507 + 0.668639
rpoE RSP_1092 sigma24, RpoEchromosome 1 CDS2849604 546 + 0.664835
rpoH1 RSP_2410 sigma factor RpoH1 (Sigma-32 group, heat shock)chromosome 1 CDS1039301 897 + 0.661093
rpoH2 RSP_0601 sigma factor RpoH2 (Sigma-32 groupchromosome 1 CDS2342488 879 - 0.660978
rpoN RSP_0527 sigma-54, RpoNchromosome 1 CDS2264623 1305 - 0.723372
rpoN2 RSP_0068 Sigma-54 factor (RpoN2)chromosome 1 CDS1774019 1335 - 0.698876
rpoN4 RSP_2867 Sigma-54 factor family proteinchromosome 1 CDS1533763 1275 + 0.739608
rpoZ RSP_1669 RNA polymerase omega subunitchromosome 1 CDS260175 354 + 0.646893
smoC RSP_0090 Operon regulator SmoCchromosome 1 CDS1800089 954 + 0.680294
spo0J RSP_1225 ParB-like partition proteinchromosome 1 CDS2997454 906 - 0.666667
spoT/relA RSP_1670 RelA/SpoT family proteinchromosome 1 CDS260559 2118 + 0.656752
tetR RSP_2801 transcriptional regulator, TetR family,chromosome 1 CDS1518439 570 + 0.712281
ureG RSP_0302 Urease accessory protein Gchromosome 1 CDS2032887 624 - 0.692308
xylR RSP_1181 xylose operon repressorchromosome 1 CDS2949805 1278 + 0.710485
yobR RSP_0925 Putative acetyl transferasechromosome 1 CDS2674268 711 + 0.742616