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2024-05-15 10:44:12

Gene list

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COG category: Transcription
Genomic element: chromosome I

Number of genes found: 190

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Vibrio vulnificus CMCP6, CMCP6
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA VV11429 DNA-binding HTH domain-containing proteinchromosome I CDS1412093 660 - 0.442424
NA VV11807 AraC-type DNA-binding domain-containing proteinchromosome I CDS1804875 201 + 0.313433
NA VV10562 Transcriptional regulatorchromosome I CDS573565 846 + 0.460993
NA VV11254 Response regulatorchromosome I CDS1239360 684 - 0.491228
NA VV11792 Transcriptional regulatorchromosome I CDS1782970 897 - 0.502787
NA VV11081 Transcriptional regulator TetR familychromosome I CDS1074837 582 - 0.455326
NA VV12744 Response regulatorchromosome I CDS2807518 636 - 0.419811
NA VV11109 Transcriptional regulator AsnCchromosome I CDS1109653 465 - 0.488172
NA VV12480 Putative acetyltransferasechromosome I CDS2524866 450 + 0.395556
NA VV12078 Transcription-repair coupling factorchromosome I CDS2070694 3462 - 0.5026
NA VV10451 Transcriptional regulatorchromosome I CDS448992 906 - 0.450331
NA VV12009 Response regulatorchromosome I CDS2005954 786 - 0.470738
NA VV10680 BolA/YrbA family proteinchromosome I CDS703245 255 - 0.447059
NA VV10439 Predicted transcriptional regulatorchromosome I CDS434877 507 - 0.483235
NA VV12777 Transcriptional regulatorchromosome I CDS2840186 870 - 0.470115
NA VV10324 Predicted transcriptional regulatorchromosome I CDS312272 450 - 0.455556
NA VV13189 Response regulatorchromosome I CDS3264876 489 - 0.402863
NA VV12140 DNA-binding response regulator TorRchromosome I CDS2140524 714 + 0.463585
NA VV12904 Putative LysR-family transcriptional regulatorchromosome I CDS2971866 876 + 0.472603
NA VV12877 Putative stress-responsive transcriptional regulatorchromosome I CDS2945433 390 - 0.448718
NA VV11231 Factor for inversion stimulation Fis, transcriptional activatorchromosome I CDS1210577 297 - 0.414141
NA VV11013 ParB family proteinchromosome I CDS1016142 882 + 0.477324
NA VV10083 Predicted transcriptional regulatorchromosome I CDS79555 243 + 0.497942
NA VV12038 Predicted transcriptional regulatorchromosome I CDS2030746 231 - 0.393939
NA VV12753 Transcriptional regulator of sugar metabolismchromosome I CDS2818516 774 + 0.505168
NA VV12951 Leucine-responsive regulatory proteinchromosome I CDS3015110 495 - 0.418182
NA VV11095 Serine/threonine protein kinasechromosome I CDS1094281 1335 - 0.510861
NA VV12863 Transcriptional regulatorchromosome I CDS2926702 1530 + 0.494771
NA VV11559 DNA-directed RNA polymerase specialized sigma subunitchromosome I CDS1530879 579 + 0.44905
NA VV12270 Transcriptional regulator TyrRchromosome I CDS2287464 1545 + 0.488026
NA VV10037 Response regulatorchromosome I CDS42342 729 - 0.506173
NA VV10548 Aerobic respiration control protein FexAchromosome I CDS550174 717 + 0.475593
NA VV10512 Transcription activator HlyUchromosome I CDS511083 297 - 0.417508
NA VV10860 Transcriptional accessory proteinchromosome I CDS869023 2325 + 0.540215
NA VV10337 DNA-directed RNA polymerase, beta' subunit/160 kD subunitchromosome I CDS323853 465 + 0.477419
NA VV11974 RNA polymerase sigma-70 factorchromosome I CDS1963865 576 - 0.428819
NA VV10190 Transcription activator ToxRchromosome I CDS183040 873 + 0.430699
NA VV11687 Transcription elongation factorchromosome I CDS1670368 474 + 0.438819
NA VV10081 Predicted transcriptional regulatorchromosome I CDS78408 807 + 0.482032
NA VV12540 Histone acetyltransferase HPA2chromosome I CDS2582608 447 + 0.402685
NA VV11952 Flagellar-specific RNA polymerase sigma factorchromosome I CDS1943358 735 + 0.436735
NA VV10674 Arginine repressorchromosome I CDS695924 471 + 0.458599
NA VV11098 Gluconate utilization system gnt-I transcriptional repressorchromosome I CDS1097638 1008 + 0.52877
NA VV10402 Predicted transcriptional regulatorchromosome I CDS393267 471 + 0.422505
NA VV10939 ATP-dependent RNA helicase RhlBchromosome I CDS945638 1308 + 0.49159
NA VV11740 Glycine cleavage system transcription activatorchromosome I CDS1728842 924 - 0.454545
NA VV11760 LysR-like transcriptional regulatorchromosome I CDS1747227 906 + 0.522075
NA VV11211 DNA-directed RNA polymerase, beta subunit/140 kD subunitchromosome I CDS1187575 4029 + 0.469347
NA VV12128 Conserved hypothetical proteinchromosome I CDS2128680 249 - 0.409639
NA VV11367 Predicted transcriptional regulatorchromosome I CDS1347592 612 - 0.477124
NA VV10373 Predicted phage-specific transcriptional regulatorchromosome I CDS357551 261 + 0.340996
NA VV11775 Transcriptional regulatorchromosome I CDS1767770 1002 - 0.515968
NA VV10692 DNA-directed RNA polymerase specialized sigma subunitchromosome I CDS711211 1464 + 0.476093
NA VV11272 Transcriptional regulatorchromosome I CDS1256798 636 + 0.455975
NA VV10957 Transcriptional regulatorchromosome I CDS961669 942 + 0.498938
NA VV10390 SOS-response transcriptional repressor LexA-like proteinchromosome I CDS370238 414 + 0.405797
NA VV12847 Response regulatorchromosome I CDS2912827 660 + 0.477273
NA VV12442 Unknownchromosome I CDS2482827 480 + 0.439583
NA VV11358 Transcriptional regulatorchromosome I CDS1336700 1008 - 0.503968
NA VV12233 Fatty acid metabolism regulator proteinchromosome I CDS2245867 840 + 0.428571
NA VV11544 Transcriptional regulatorchromosome I CDS1517344 897 + 0.460424
NA VV12041 Predicted transcriptional regulatorchromosome I CDS2032988 132 - 0.537879
NA VV12273 Conserved hypothetical proteinchromosome I CDS2290239 417 + 0.479616
NA VV12537 Putative acetyltransferasechromosome I CDS2579981 498 - 0.419679
NA VV10945 Transcriptional regulatorchromosome I CDS952787 798 + 0.478697
NA VV12263 Guanylate cyclase-related proteinchromosome I CDS2278870 558 + 0.46595
NA VV12491 Putative acetyltransferasechromosome I CDS2534646 441 + 0.362812
NA VV12954 Cys regulon transcriptional activatorchromosome I CDS3018262 975 - 0.44
NA VV12146 Conserved hypothetical proteinchromosome I CDS2149580 1050 - 0.477143
NA VV12119 Cold shock-like protein CspDchromosome I CDS2121309 231 - 0.463203
NA VV10858 Transcriptional regulator OmpRchromosome I CDS867385 720 - 0.497222
NA VV10065 Predicted transcriptional regulatorchromosome I CDS70129 486 - 0.467078
NA VV11348 Predicted transcriptional regulatorchromosome I CDS1329982 546 + 0.501832
NA VV10489 Trp operon repressorchromosome I CDS485659 309 - 0.443366
NA VV12191 Conserved hypothetical proteinchromosome I CDS2198304 324 - 0.429012
NA VV11206 Transcription antiterminatorchromosome I CDS1184291 549 + 0.469945
NA VV12284 Transcriptional regulatorchromosome I CDS2305791 918 - 0.479303
NA VV10129 Transcriptional regulatorchromosome I CDS115701 945 - 0.501587
NA VV12544 Putative acetyltransferasechromosome I CDS2585437 480 + 0.439583
NA VV11169 Transcriptional regulatorchromosome I CDS1163168 837 + 0.48626
NA VV10852 Guanosine-3',5'-bis(diphosphate)3'-pyrophosphohy drolasechromosome I CDS859170 2121 + 0.512966
NA VV10814 Putative KDO kinase WavCchromosome I CDS823656 711 - 0.464135
NA VV12532 Cold shock domain family proteinchromosome I CDS2575101 468 + 0.42735
NA VV10318 Transcription termination factorchromosome I CDS308167 468 - 0.470085
NA VV10736 DNA-directed RNA polymerase, alpha subunit/40 kD subunitchromosome I CDS752315 993 - 0.465257
NA VV12208 AraC-type DNA-binding domain-containing proteinchromosome I CDS2211635 840 + 0.509524
NA VV12832 Transcriptional regulatorchromosome I CDS2896619 627 - 0.457735
NA VV12393 Histidine utilization repressorchromosome I CDS2432160 708 - 0.473164
NA VV10632 DNA-directed RNA polymerase, sigma subunitchromosome I CDS648089 1875 + 0.465067
NA VV10534 Superfamily II DNA and RNA helicasechromosome I CDS535282 1227 + 0.502037
NA VV12991 Transcriptional regulator/sugar kinasechromosome I CDS3058517 1218 - 0.46798
NA VV11998 Transcriptional regulatorchromosome I CDS1994957 876 - 0.465753
NA VV10851 DNA-directed RNA polymerase, subunit K/omegachromosome I CDS858863 273 + 0.505495
NA VV11588 DNA-directed RNA polymerase, sigma subunitchromosome I CDS1559448 993 + 0.448137
NA VV11246 Response regulatorchromosome I CDS1230114 636 - 0.487421
NA VV12825 Transcriptional regulatorchromosome I CDS2888213 855 + 0.446784
NA VV10184 Transcription antiterminatorchromosome I CDS174367 507 - 0.453649
NA VV10984 Transcriptional regulatorchromosome I CDS987850 966 - 0.52381
NA VV10937 Transcription termination factor Rhochromosome I CDS943742 1260 - 0.480159
NA VV13164 Transcriptional regulatorchromosome I CDS3237632 591 + 0.468697
NA VV11158 DNA-directed RNA polymerase, sigma subunitchromosome I CDS1152597 858 + 0.488345
NA VV12183 Conserved hypothetical proteinchromosome I CDS2185322 858 - 0.411422
NA VV12473 Predicted nucleotide-binding proteinchromosome I CDS2519149 900 + 0.403333
NA VV12526 Predicted transcriptional regulatorchromosome I CDS2570613 243 - 0.399177
NA VV10306 Transcriptional regulatorchromosome I CDS297892 924 - 0.475108
NA VV12448 Probable acetyltransferasechromosome I CDS2486950 426 + 0.410798
NA VV12188 Helicase-related proteinchromosome I CDS2193101 2907 - 0.463708
NA VV12242 Transcriptional regulatorchromosome I CDS2254607 486 - 0.483539
NA VV11375 Transcriptional regulatorchromosome I CDS1358826 900 + 0.482222
NA VV12218 MetRchromosome I CDS2226695 912 - 0.5
NA VV12844 DNA or RNA helicase of superfamily IIchromosome I CDS2910600 819 + 0.4884
NA VV12028 Predicted transcriptional regulatorchromosome I CDS2019690 903 + 0.390919
NA VV11362 Transcriptional regulator of met regulonchromosome I CDS1342285 318 - 0.449686
NA VV10468 Response regulatorchromosome I CDS467204 690 - 0.481159
NA VV11576 Guanosine polyphosphate pyrophosphohydrolase/synthetasechromosome I CDS1549544 441 + 0.494331
NA VV10642 Transcriptional regulator of sugar metabolismchromosome I CDS660793 762 - 0.494751
NA VV10854 RecG-like helicasechromosome I CDS862176 1074 + 0.528864
NA VV11093 DNA-directed RNA polymerase specialized sigma subunitchromosome I CDS1092243 570 - 0.480702
NA VV12880 Transcriptional regulatorchromosome I CDS2946966 1038 + 0.495183
NA VV11304 Exoribonuclease Rchromosome I CDS1290034 2454 + 0.497148
NA VV12685 Response regulator of citrate/malate metabolismchromosome I CDS2733158 687 - 0.486172
NA VV10525 Sigma-54 dependent transcriptional regulatorchromosome I CDS524182 1335 - 0.466667
NA VV11212 DNA-directed RNA polymerase, beta' subunit/160 kD subunitchromosome I CDS1191679 4203 + 0.478706
NA VV12479 Putative acetyltransferasechromosome I CDS2524252 480 + 0.433333
NA VV11166 SOS-response transcriptional repressorchromosome I CDS1160001 624 + 0.498397
NA VV12522 Prophage antirepressorchromosome I CDS2565124 756 + 0.395503
NA VV10859 Transcription elongation factor GreBchromosome I CDS868305 471 - 0.501062
NA VV10640 Mannitol operon repressorchromosome I CDS658259 531 + 0.440678
NA VV12733 Transcriptional regulatorchromosome I CDS2795029 696 - 0.497126
NA VV13190 Putative transcriptional regulatorchromosome I CDS3265526 318 + 0.421384
NA VV10126 Response regulatorchromosome I CDS112135 669 - 0.479821
NA VV10829 Transcriptional regulator, TetR familychromosome I CDS836967 591 + 0.477157
NA VV11213 Regulator of sigma Dchromosome I CDS1196023 495 - 0.438384
NA VV12421 DNA-directed RNA polymerase, beta subunit/140 kD subunitchromosome I CDS2465244 501 + 0.41517
NA VV11027 Transcriptional regulatorchromosome I CDS1028817 897 + 0.521739
NA VV11302 Predicted transcriptional regulatorchromosome I CDS1287888 426 + 0.488263
NA VV11786 Transcriptional regulator of sugar metabolismchromosome I CDS1777398 732 - 0.490437
NA VV10378 Predicted transcriptional regulatorchromosome I CDS362435 258 + 0.406977
NA VV10290 Trehalose operon repressorchromosome I CDS281633 948 - 0.486287
NA VV12879 Phage shock protein Achromosome I CDS2946064 672 - 0.438988
NA VV12599 NAD-dependent protein deacetylaseschromosome I CDS2638955 738 + 0.48103
NA VV13054 Response regulatorchromosome I CDS3123713 645 - 0.43876
NA VV12258 Orfc273-1-like proteinchromosome I CDS2272537 423 - 0.434988
NA VV10343 Transcriptional regulatorchromosome I CDS331669 885 - 0.497175
NA VV10645 Putative transcriptional regulator LuxZchromosome I CDS663601 627 + 0.449761
NA VV12796 Superfamily II DNA and RNA helicasechromosome I CDS2855925 393 + 0.450382
NA VV10181 Transcriptional regulatorchromosome I CDS169512 1215 + 0.465021
NA VV12046 Predicted transcriptional regulatorchromosome I CDS2039434 240 + 0.441667
NA VV12516 Predicted transcriptional regulatorchromosome I CDS2558126 534 + 0.40824
NA VV13152 Transcriptional regulatorchromosome I CDS3228373 462 - 0.426407
NA VV11634 SmcRchromosome I CDS1604028 555 - 0.463063
NA VV12365 Transcriptional regulatorchromosome I CDS2397549 792 + 0.458333
NA VV11656 Sugar diacid utilization regulatorchromosome I CDS1628849 1197 - 0.451128
NA VV11769 EBG repressor-like proteinchromosome I CDS1760008 999 - 0.497497
NA VV11487 Transcriptional regulatorchromosome I CDS1474945 1053 + 0.445394
NA VV11575 Guanosine polyphosphate pyrophosphohydrolase/synthetasechromosome I CDS1547758 1701 + 0.496179
NA VV12692 DNA-binding HTH domain-containing proteinchromosome I CDS2741145 1188 + 0.46633
NA VV10413 Transcriptional regulatorchromosome I CDS404902 903 - 0.488372
NA VV11470 Histone acetyltransferase HPA2chromosome I CDS1457208 495 - 0.494949
NA VV11140 Predicted transcriptional regulatorchromosome I CDS1140488 336 + 0.485119
NA VV12138 Transcriptional regulatorchromosome I CDS2138325 1005 - 0.465672
NA VV10650 Transcriptional regulator. LysR familychromosome I CDS671414 960 - 0.471875
NA VV11710 Transcriptional regulatorchromosome I CDS1696164 414 + 0.471014
NA VV10513 Transcription activator NhaRchromosome I CDS511508 852 - 0.449531
NA VV11814 RNA polymerase sigma-70 factorchromosome I CDS1810020 561 + 0.45098
NA VV10855 RecG-like helicasechromosome I CDS863197 1062 + 0.538606
NA VV12445 Probable acetyltransferasechromosome I CDS2484287 522 + 0.40613
NA VV11529 Putative transcriptional regulatorchromosome I CDS1501465 564 - 0.487589
NA VV11629 Pyruvate dehydrogenase complex repressorchromosome I CDS1596798 768 + 0.472656
NA VV12241 Transcriptional regulatorchromosome I CDS2253894 639 + 0.467919
NA VV10063 DNA-directed RNA polymerase, beta subunit/140 kD subunitchromosome I CDS68550 675 - 0.497778
NA VV10883 Predicted acetyltransferasechromosome I CDS893076 927 - 0.514563
NA VV12820 Regulator of competence-specific geneschromosome I CDS2882296 588 - 0.408163
NA VV12726 Histone acetyltransferase HPA2chromosome I CDS2784348 480 - 0.447917
NA VV12252 Putative GntR-family regulatory proteinchromosome I CDS2266811 1407 + 0.474058
NA VV10503 Response regulator of the LytR/AlgR familychromosome I CDS501931 729 + 0.493827
NA VV11076 Transcriptional activator IlvYchromosome I CDS1067473 891 - 0.416386
NA VV11459 Superfamily II DNA/RNA helicasechromosome I CDS1445786 2910 + 0.512715
NA VV12136 Conserved hypothetical proteinchromosome I CDS2137331 594 - 0.451178
NA VV10141 Rad3-related DNA helicasechromosome I CDS125523 1920 - 0.492188
NA VV12570 Transcriptional regulatorchromosome I CDS2607386 912 + 0.47807
NA VV10456 Putative transcriptional regulatorchromosome I CDS452558 942 + 0.436306
NA VV12757 Cold shock proteinchromosome I CDS2822960 213 - 0.399061
NA VV12362 Conserved hypothetical proteinchromosome I CDS2391507 810 + 0.411111
NA VV11229 Predicted transcriptional regulatorchromosome I CDS1208224 399 + 0.453634
NA VV10230 Anti-sigma28 factorchromosome I CDS222314 327 + 0.464832
NA VV11565 dsRNA-specific ribonucleasechromosome I CDS1536482 678 + 0.476401
NA VV13183 Predicted transcriptional regulatorchromosome I CDS3260942 714 - 0.442577
NA VV12113 ATP-dependent helicasechromosome I CDS2113720 2112 - 0.458807
NA VV11695 Transcription pausing L factorchromosome I CDS1677823 1488 + 0.457661