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2024-05-17 00:40:31

Gene list

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COG category: Transcription
Genomic element: megaplasmid

Number of genes found: 58

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Silicibacter pomeroyi DSS-3, DSS-3
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SPOA0149 transcriptional regulator, GntR familymegaplasmid CDS160318 1317 + 0.668185
NA SPOA0387 transcriptional regulator, LysR familymegaplasmid CDS435270 915 + 0.644809
NA SPOA0159 transcriptional regulator, LysR familymegaplasmid CDS175095 903 + 0.694352
NA SPOA0405 transcriptional regulator, MarR familymegaplasmid CDS451196 468 - 0.67735
NA SPOA0326 transcriptional regulator, LysR familymegaplasmid CDS365032 885 + 0.699435
NA SPOA0417 transcriptional regulator, GntR familymegaplasmid CDS463866 690 - 0.665217
NA SPOA0375 transcriptional regulator, gntR familymegaplasmid CDS419547 1464 + 0.607924
NA SPOA0338 transcriptional regulator, LysR familymegaplasmid CDS381777 975 + 0.582564
NA SPOA0105 transcriptional regulator, putativemegaplasmid CDS105320 375 - 0.621333
NA SPOA0281 transcriptional regulator, LysR familymegaplasmid CDS308914 885 + 0.656497
NA SPOA0056 DNA-binding protein, putativemegaplasmid CDS50922 615 - 0.630894
NA SPOA0230 transcriptional regulator, LysR familymegaplasmid CDS251221 918 - 0.599129
NA SPOA0344 transcriptional regulator, LysR familymegaplasmid CDS386564 945 - 0.622222
NA SPOA0252 transcriptional regulator, LacI familymegaplasmid CDS276053 1026 + 0.576998
NA SPOA0199 transcriptional regulator, GntR familymegaplasmid CDS210138 1479 - 0.623394
NA SPOA0303 replication protein, putativemegaplasmid CDS332220 1098 - 0.643898
NA SPOA0357 DNA-binding response regulatormegaplasmid CDS399373 729 + 0.640604
NA SPOA0259 transcriptional regulator, LacI familymegaplasmid CDS284124 1044 + 0.583333
NA SPOA0289 transcriptional regulator, AraC familymegaplasmid CDS318870 900 + 0.691111
NA SPOA0427 transcriptional regulator, ArsR familymegaplasmid CDS474087 333 - 0.624625
NA SPOA0379 transcriptional regulator, GntR familymegaplasmid CDS425152 1473 + 0.67685
NA SPOA0268 transcriptional regulator, IclR familymegaplasmid CDS294459 813 + 0.627306
NA SPOA0451 transcriptional regulator, MarR familymegaplasmid CDS110630 477 - 0.528302
NA SPOA0317 transcriptional regulator, AsnC familymegaplasmid CDS355845 459 - 0.618736
NA SPOA0426 transcriptional regulator, AraC familymegaplasmid CDS473076 996 + 0.673695
NA SPOA0336 transcriptional regulator, LacI familymegaplasmid CDS377348 1035 + 0.576812
NA SPOA0261 transcriptional regulator, GntR familymegaplasmid CDS286995 681 - 0.580029
NA SPOA0164 transcriptional regulator, GntR familymegaplasmid CDS180424 1386 + 0.608947
NA SPOA0452 transcriptional regulator, MarR familymegaplasmid CDS111099 474 - 0.544304
NA SPOA0273 DNA-binding protein, putativemegaplasmid CDS300585 567 - 0.636684
NA SPOA0284 transcriptional regulator, LysR familymegaplasmid CDS313162 891 + 0.666667
NA SPOA0038 transcriptional regulator, LuxR familymegaplasmid CDS33041 1176 - 0.60119
NA SPOA0177 hydrogen peroxide-inducible genes activator, putativemegaplasmid CDS192528 693 - 0.59596
NA SPOA0423 transcriptional regulator, TetR familymegaplasmid CDS469019 567 + 0.611993
NA SPOA0392 RNA polymerase sigma-70 factor, putativemegaplasmid CDS441633 639 + 0.643192
NA SPOA0107 transcriptional regulator, LysR familymegaplasmid CDS107348 894 - 0.58613
NA SPOA0348 conserved hypothetical proteinmegaplasmid CDS390671 546 + 0.608059
NA SPOA0446 transcriptional regulator, LysR familymegaplasmid CDS490624 897 - 0.691193
NA SPOA0306 S1 RNA binding domain proteinmegaplasmid CDS335830 2298 - 0.684073
NA SPOA0143 transcriptional regulator, IclR familymegaplasmid CDS153574 846 - 0.652482
NA SPOA0102 transcriptional regulator, LuxR familymegaplasmid CDS102382 969 - 0.616099
NA SPOA0165 transcriptional regulator, LysR familymegaplasmid CDS181865 936 - 0.601496
NA SPOA0170 transcriptional regulator, MarR familymegaplasmid CDS188365 543 - 0.54512
NA SPOA0224 nitrite reductase heme biosynthesis D/L protein, putativemegaplasmid CDS246196 993 + 0.708963
NA SPOA0023 transcriptional regulator, TetR familymegaplasmid CDS19700 657 - 0.668189
NA SPOA0085 DNA-binding protein, putativemegaplasmid CDS80961 219 - 0.575342
NA SPOA0060 transcriptional regulator, AraC familymegaplasmid CDS56564 867 + 0.690888
NA SPOA0075 conserved hypothetical proteinmegaplasmid CDS72135 594 + 0.646465
NA SPOA0301 transcriptional regulator, GntR familymegaplasmid CDS330025 720 + 0.5625
NA SPOA0186 Rrf2 family proteinmegaplasmid CDS198944 483 + 0.590062
NA SPOA0389 transcriptional regulator, MerR familymegaplasmid CDS438569 438 + 0.664384
NA SPOA0242 transcriptional regulator, LacI familymegaplasmid CDS265820 1041 - 0.585014
NA SPOA0067 transcriptional regulator, TetR familymegaplasmid CDS66808 648 - 0.67284
NA SPOA0150 transcriptional regulator, AraC familymegaplasmid CDS161659 1038 - 0.634875
NA SPOA0314 transcriptional regulator, LysR familymegaplasmid CDS349404 867 + 0.582468
nirG SPOA0225 nitrite reductase heme biosynthesis G proteinmegaplasmid CDS247185 450 + 0.642222
nirH SPOA0226 nitrite reductase heme biosynthesis H proteinmegaplasmid CDS247631 483 + 0.668737
pcaQ SPOA0047 pca operon transcriptional activator PcaQmegaplasmid CDS41523 918 + 0.667756