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2024-05-19 06:37:40

Gene list

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COG category: Transcription
Genomic element: chromosome

Number of genes found: 151

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Lactobacillus acidophilus NCFM, NCFM
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA LBA1148 fibronectin-binding protein (adherence-virulence)chromosome CDS1121174 1692 + 0.315012
NA LBA0607 putative transcriptional regulatorchromosome CDS595488 813 + 0.333333
NA LBA1863 putative transcriptional regulatorchromosome CDS1871841 492 - 0.298781
NA LBA1546 putative transcriptional regulatorchromosome CDS1536270 468 - 0.361111
NA LBA0095 putative regulatory proteinchromosome CDS95028 942 + 0.329087
NA LBA1659 response regulatorchromosome CDS1682829 702 + 0.354701
NA LBA0130 hypothetical proteinchromosome CDS123679 453 + 0.333333
NA LBA1649 hypothetical proteinchromosome CDS1669844 801 - 0.359551
NA LBA0599 transcriptional regulatorchromosome CDS584197 765 - 0.355556
NA LBA0573 putative transcriptional regulatorchromosome CDS559451 444 + 0.331081
NA LBA0248 hypothetical proteinchromosome CDS243640 453 + 0.304636
NA LBA0475 restriction endonucleasechromosome CDS463844 4506 + 0.320684
NA LBA1798 response regulatorchromosome CDS1819160 825 - 0.326061
NA LBA0085 transcriptional regulatorchromosome CDS87843 816 + 0.323529
NA LBA0818 putative cold-shock proteinchromosome CDS801193 204 + 0.318627
NA LBA0886 sugar kinase-putative transcriptional regulatorchromosome CDS864031 885 - 0.348023
NA LBA0443 hypothetical proteinchromosome CDS423467 285 + 0.266667
NA LBA0697 transcriptional regulatorchromosome CDS691866 1032 + 0.382752
NA LBA1136 transcriptional regulatorchromosome CDS1113655 507 - 0.345168
NA LBA0554 transcriptional regulatorchromosome CDS541608 513 - 0.331384
NA LBA0925 transcriptional regulatorchromosome CDS901255 939 - 0.343983
NA LBA0603 response regulator bacteriocinproduction-relatedchromosome CDS589981 798 + 0.315789
NA LBA0125 hypothetical proteinchromosome CDS119982 810 + 0.274074
NA LBA1874 transcriptional regulator-familychromosome CDS1886552 951 - 0.352261
NA LBA0267 ATP-dependent RNA helicase-like proteinchromosome CDS257801 1488 + 0.384409
NA LBA0333 hypothetical proteinchromosome CDS317178 372 + 0.290323
NA LBA1293 putative transcriptional regulatorchromosome CDS1270710 408 - 0.29902
NA LBA1692 putative acetyltransferasechromosome CDS1713982 564 - 0.338652
NA LBA1258 hypothetical proteinchromosome CDS1235554 297 - 0.3367
NA LBA1172 transcriptional regulatorchromosome CDS1155140 840 - 0.302381
NA LBA1788 transcriptional regulatorchromosome CDS1811749 210 - 0.390476
NA LBA0128 hypothetical proteinchromosome CDS122924 279 + 0.326165
NA LBA0237 transcriptional regulator raffinose operonchromosome CDS234089 822 - 0.329684
NA LBA0551 putative acetyltransferasechromosome CDS538341 501 + 0.351297
NA LBA1520 putative transcriptional regulatorchromosome CDS1516073 351 - 0.321937
NA LBA0117 putative transcriptional regulatorchromosome CDS112683 720 - 0.323611
NA LBA0078 putative response regulatorchromosome CDS79913 717 + 0.377964
NA LBA1542 hypothetical proteinchromosome CDS1531202 435 - 0.317241
NA LBA0244 putative transcriptional regulatorchromosome CDS238636 966 - 0.322981
NA LBA0962 hypothetical proteinchromosome CDS938384 594 + 0.311448
NA LBA0763 hypothetical proteinchromosome CDS748544 552 + 0.304348
NA LBA1671 putative acetyltransferasechromosome CDS1692580 453 - 0.368653
NA LBA0355 transcriptional regulatorchromosome CDS335494 882 - 0.342404
NA LBA1774 transcriptional regulatorchromosome CDS1801749 279 - 0.329749
NA LBA0285 RNA-polymerase DNA-directed beta subunitchromosome CDS282722 3654 + 0.394089
NA LBA0403 hypothetical proteinchromosome CDS378008 465 + 0.326882
NA LBA1936 hypothetical proteinchromosome CDS1947730 525 + 0.337143
NA LBA1030 streptothricine-acetyl-transferasechromosome CDS1021538 534 + 0.344569
NA LBA1034 hypothetical proteinchromosome CDS1024070 462 + 0.320346
NA LBA1614 putative transcriptional regulatorchromosome CDS1615696 417 - 0.302158
NA LBA1431 two-component response regulatorchromosome CDS1418057 666 - 0.34985
NA LBA0256 hypothetical proteinchromosome CDS248261 207 + 0.323671
NA LBA0442 phage related helicasechromosome CDS420860 2595 + 0.304432
NA LBA1604 hypothetical proteinchromosome CDS1597918 330 + 0.354545
NA LBA0228 transcriptional regulatorchromosome CDS225591 909 + 0.348735
NA LBA0317 RNA-polymerase DNA-directedchromosome CDS302848 939 + 0.366347
NA LBA1241 hypothetical proteinchromosome CDS1217335 447 - 0.319911
NA LBA0746 response regulatorchromosome CDS732619 723 + 0.355463
NA LBA0897 putative cro-like proteinchromosome CDS873770 204 + 0.352941
NA LBA0016 fructokinasechromosome CDS16483 879 + 0.401593
NA LBA1691 putative transcriptional regulatorchromosome CDS1713454 501 + 0.317365
NA LBA1393 acetyltransferasechromosome CDS1385483 513 - 0.348928
NA LBA0896 putative transcriptional regulatorchromosome CDS873268 339 - 0.353982
NA LBA0138 hypothetical proteinchromosome CDS131764 741 + 0.336032
NA LBA1005 putative acetyltransferasechromosome CDS983004 390 + 0.25641
NA LBA0284 RNA-polymerase DNA-directed beta subunitchromosome CDS279065 3642 + 0.39676
NA LBA1577 transcriptional regulatorchromosome CDS1570619 834 - 0.270983
NA LBA0249 putative acetyltransferasechromosome CDS244511 504 + 0.365079
NA LBA1899 putative transcriptional regulatorchromosome CDS1909226 663 - 0.313726
NA LBA1147 l-fucose operonchromosome CDS1120521 411 - 0.326034
NA LBA1700 transcriptional regulator-typechromosome CDS1722313 1080 - 0.280556
NA LBA1820 two-component response regulatorchromosome CDS1834391 687 - 0.352256
NA LBA1443 msm operon regulatory proteinchromosome CDS1430544 840 + 0.282143
NA LBA0058 putative phage DEAD box family helicasechromosome CDS54086 2835 + 0.322751
NA LBA0556 putative acetyltransferasechromosome CDS544628 438 + 0.356164
NA LBA0226 transcriptional regulatorchromosome CDS223292 717 - 0.322176
NA LBA1096 putative repressor proteinchromosome CDS1078677 930 - 0.291398
NA LBA1367 transcriptional regulator, glucose kinasechromosome CDS1341977 885 - 0.315254
NA LBA0416 RNA helicasechromosome CDS391744 1362 + 0.354626
NA LBA1835 transcriptional regulatorchromosome CDS1848188 624 - 0.341346
NA LBA0188 transcriptional regulatorchromosome CDS180723 1104 + 0.38587
NA LBA1094 putative ATPasechromosome CDS1076310 2061 + 0.291606
NA LBA0449 Ribonuclease Rchromosome CDS430808 2349 + 0.362282
NA LBA0617 ATP-dependent RNA helicase, DEAD-DEAH boxchromosome CDS604098 1239 + 0.332526
NA LBA0232 RNA polymerase delta subunitchromosome CDS228791 555 + 0.398198
NA LBA1955 transcription regulator familychromosome CDS1966666 732 - 0.304645
NA LBA1701 melibiose operon regulatory proteinchromosome CDS1723902 1017 - 0.320551
NA LBA0351 putative sigma factor 30 RNA polymerasechromosome CDS332411 537 + 0.303538
NA LBA1862 hypothetical proteinchromosome CDS1870590 819 - 0.302808
NA LBA1840 transcriptional regulatorchromosome CDS1852453 528 - 0.297348
NA LBA1297 dsRNA-specific ribonuclease RNaseIIIchromosome CDS1277525 687 - 0.317322
NA LBA1775 hypothetical proteinchromosome CDS1802170 438 + 0.326484
NA LBA1021 putative transcriptional regulatorchromosome CDS1014166 192 - 0.296875
NA LBA1664 acetyltransferasechromosome CDS1686686 516 + 0.321705
NA LBA1371 putative transcriptional regulator phage-relatedchromosome CDS1346639 384 - 0.372396
NA LBA1444 transcriptional regulator familychromosome CDS1431441 435 - 0.344828
NA LBA1480 putative beta-glucosidasechromosome CDS1467162 1281 - 0.327088
atkY LBA1963 similar to the negative regulator of copYZAB operonchromosome CDS1975864 441 + 0.37415
cadX LBA0022 cadmium resistance regulatory proteinchromosome CDS20491 354 + 0.293785
ccpA LBA0431 catabolite control protein Achromosome CDS405409 1002 + 0.347305
dinG LBA1164 ATP-dependent DNA helicasechromosome CDS1141057 2784 - 0.322917
epsA LBA1737 exopolysaccharide biosynthesis proteinchromosome CDS1770421 1056 - 0.391098
fruR LBA1779 repressor of fructose operonchromosome CDS1806152 756 - 0.387566
gntR LBA1189 transcriptional regulatorchromosome CDS1166344 375 - 0.293333
gntR LBA0516 transcriptional regulatorchromosome CDS502193 702 + 0.373219
gntR LBA0875 transcriptional regulatorchromosome CDS854254 705 - 0.316312
gntR LBA0882 transcriptional regulatorchromosome CDS859878 723 - 0.3361
gntR LBA0592 transcriptional regulatorchromosome CDS577138 726 + 0.376033
gntR LBA0393 transcriptional regulatorchromosome CDS364618 711 + 0.351617
greA LBA0206 transcriptional elongation factorchromosome CDS202233 462 + 0.352814
greA LBA1517 transcriptional elongation factorchromosome CDS1511771 477 - 0.366876
hrcA LBA1249 inducible transcription repressor HrcAchromosome CDS1227412 1050 - 0.345714
lacR LBA1465 transcription repressor of beta-galactosidasegenechromosome CDS1448791 1008 - 0.334325
lexA LBA1280 transcriptional repressor proteinchromosome CDS1259374 627 + 0.385965
licT LBA1479 beta-glucoside transcriptional antiterminatorchromosome CDS1466117 855 - 0.305263
licT LBA0724 transcription antiterminatorchromosome CDS713107 846 + 0.306147
licT LBA1708 transcriptional antiterminatorchromosome CDS1735467 855 - 0.318129
lisR LBA1525 two-component system regulatorchromosome CDS1520292 717 - 0.358438
lysR LBA1074 malolactic regulatorchromosome CDS1053483 915 - 0.335519
lysR LBA1024 putative transcriptional regulatorchromosome CDS1016065 867 - 0.340254
lysR LBA1233 transcriptional regulatorchromosome CDS1207296 852 - 0.320423
lysR LBA1039 putative transcriptional regulatorchromosome CDS1029498 294 - 0.312925
lysR LBA0458 transcriptional regulatorchromosome CDS442703 882 - 0.328798
lysR LBA1054 transcriptional regulatorchromosome CDS1039555 837 - 0.332139
lysR LBA1410 transcriptional regulatorchromosome CDS1398296 855 - 0.299415
lysR LBA0065 transcriptional regulatorchromosome CDS67176 642 - 0.271028
lysR LBA1124 putative transcriptional regulatorchromosome CDS1102218 972 + 0.308642
lytR LBA1762 transcriptional regulatorchromosome CDS1792881 1275 - 0.381176
marR LBA0596 transcriptional regulatorchromosome CDS581454 441 + 0.328798
marR LBA1663 transcriptional regulatorchromosome CDS1686231 456 + 0.339912
msmR LBA0500 msm operon repressorchromosome CDS487489 1005 + 0.319403
mutR LBA1934 transcriptional regulatorchromosome CDS1946230 849 + 0.309776
nusA LBA1259 transcription termination-antitermination factorchromosome CDS1235859 1170 - 0.37265
nusB LBA1333 transcriptional termination factorchromosome CDS1311194 393 - 0.346056
nusG LBA0358 transcriptional antiterminatorchromosome CDS338867 558 + 0.358423
parB LBA1828 chromosome partitioning proteinchromosome CDS1842801 831 - 0.345367
parB LBA1826 chromosome partitioning proteinchromosome CDS1841144 885 - 0.358192
rbsR LBA1488 putative ribose operon repressorchromosome CDS1476682 1014 - 0.333333
rbsR LBA1472 ribose operon repressorchromosome CDS1456974 960 + 0.309375
recG LBA1309 ATP-dependent DNA helicasechromosome CDS1289072 2037 - 0.340206
relA LBA0932 ppGpp synthetasechromosome CDS905909 2241 + 0.355199
rpiR LBA1702 transcriptional regulatorchromosome CDS1726890 855 - 0.335673
rpiR LBA1688 transcriptional regulatorchromosome CDS1709204 783 - 0.296296
rpoD LBA1196 RNA polymerase sigma factorchromosome CDS1171024 1071 - 0.378151
rpoZ LBA1324 DNA-directed RNA polymerase, omega subunitchromosome CDS1303712 225 - 0.391111
scrR LBA0399 sucrose operon repressorchromosome CDS372648 987 - 0.330294
tetR LBA0132 putative transcriptional regulatorchromosome CDS125363 684 + 0.345029
tetR LBA1638 putative transcriptional regulatorchromosome CDS1658153 564 - 0.349291
trcF LBA0273 transcriptional repair coupling factorchromosome CDS263464 3498 + 0.341338
treR LBA1013 trehalose operon transcriptional repressorchromosome CDS991288 726 + 0.296143
xylR LBA1368 transcriptional xylose repressorchromosome CDS1342999 1146 + 0.315009