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2024-05-19 07:33:26

Gene list

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COG category: Transcription
Genomic element: chromosome I

Number of genes found: 174

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Vibrio fischeri ES114, ES114
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA VF1353 virulence gene repressor RsaLchromosome I CDS1500024 315 - 0.434921
NA VF0114 transcriptional regulatory protein OmpRchromosome I CDS132135 720 + 0.430556
NA VF0124 Ttk proteinchromosome I CDS143155 249 - 0.389558
NA VF2051 transcriptional regulators, LysR familychromosome I CDS2288228 936 + 0.393162
NA VF1790 ATP-dependent RNA helicasechromosome I CDS2025680 1197 + 0.379282
NA VF2067 RNA polymerase sigma factor RpoSchromosome I CDS2308949 966 - 0.398551
NA VF2510 transcription antiterminator, BglG familychromosome I CDS2821077 1923 + 0.372335
NA VF0105 DNA-directed RNA polymerase omega chainchromosome I CDS125048 273 - 0.446886
NA VF2561 cold shock proteinchromosome I CDS2892793 210 + 0.442857
NA VF0262 DNA-directed RNA polymerase alpha chainchromosome I CDS265899 990 + 0.451515
NA VF2414 DNA-directed RNA polymerase beta chainchromosome I CDS2710901 552 - 0.414855
NA VF0021 transcriptional regulators, LysR familychromosome I CDS21997 942 + 0.386412
NA VF2572 chromosome partitioning protein ParBchromosome I CDS2901855 885 - 0.39209
NA VF0123 Ttk proteinchromosome I CDS142814 273 - 0.40293
NA VF0904 leucine-responsive regulatory proteinchromosome I CDS996675 492 + 0.386179
NA VF0476 transcription elongation factor GreAchromosome I CDS512817 474 + 0.379747
NA VF0400 toluene tolerance protein TTG2Fchromosome I CDS430545 258 + 0.395349
NA VF0155 transcriptional regulator, TetR familychromosome I CDS174889 645 + 0.395349
NA VF1573 DNA transformation protein TfoXchromosome I CDS1765333 588 + 0.35034
NA VF2254 RNA polymerase sigma factor RpoDchromosome I CDS2535279 1842 + 0.415309
NA VF0998 transcriptional regulatorchromosome I CDS1103138 1569 - 0.365201
NA VF1113 transcriptional regulator, RpiR familychromosome I CDS1228565 852 - 0.388498
NA VF0782 transcriptional regulator, MerR familychromosome I CDS856468 402 + 0.348259
NA VF2529 transcriptional activator protein ilvYchromosome I CDS2846413 885 + 0.358192
NA VF2003 phage-related proteinchromosome I CDS2243665 549 - 0.362477
NA VF2182 pyruvate dehydrogenase complex repressorchromosome I CDS2460504 771 - 0.420233
NA VF2450 RNA polymerase sigma-32 factorchromosome I CDS2757806 417 - 0.407674
NA VF1386 acetyltransferase, GNAT familychromosome I CDS1536852 447 - 0.393736
NA VF1009 ATP-dependent helicase, DinG familychromosome I CDS1115926 2085 - 0.383693
NA VF0462 transcriptional activator protein NhaRchromosome I CDS494376 891 + 0.35578
NA VF2374 two-component response regulatorchromosome I CDS2668244 630 + 0.398413
NA VF0891 transcriptional regulator, RpiR familychromosome I CDS980499 858 - 0.399767
NA VF1050 Protein YciNchromosome I CDS1160337 246 - 0.353659
NA VF0121 transcription elongation factor greBchromosome I CDS141359 474 - 0.42827
NA VF1111 transcriptional regulators, LysR familychromosome I CDS1226682 738 + 0.380759
NA VF0081 transcriptional regulator, AsnC familychromosome I CDS95142 462 - 0.428571
NA VF1269 DNA polymerase V subunitchromosome I CDS1412520 408 - 0.409314
NA VF0039 virulence genes transcriptional regulator PhcAchromosome I CDS47933 615 - 0.365854
NA VF0990 serine/threonine protein kinasechromosome I CDS1092502 960 - 0.341667
NA VF2420 transcription antitermination protein NusGchromosome I CDS2714253 168 - 0.410714
NA VF2177 LitR, transcriptional regulatorchromosome I CDS2452212 606 + 0.353135
NA VF1627 response regulator, GacAchromosome I CDS1831011 645 - 0.4
NA VF2087 ribonuclease IIIchromosome I CDS2330052 672 - 0.415179
NA VF2060 transcriptional activator CadCchromosome I CDS2300835 1626 - 0.369004
NA VF1490 cys regulon transcriptional activatorchromosome I CDS1652355 975 - 0.406154
NA VF0526 transcriptional regulatorchromosome I CDS561816 681 - 0.35536
NA VF1572 transcriptional regulator, LacI familychromosome I CDS1763829 1014 + 0.386588
NA VF2421 transcription antitermination protein NusGchromosome I CDS2714546 255 - 0.4
NA VF1974 hydrogen peroxide-inducible genes activatorchromosome I CDS2212832 900 - 0.398889
NA VF1677 transcriptional regulator, AraC familychromosome I CDS1890741 885 - 0.39096
NA VF2120 aerobic respiration control protein ArcAchromosome I CDS2362113 720 + 0.423611
NA VF1988 phosphate regulon transcriptional regulatory protein PhoBchromosome I CDS2227631 693 - 0.417027
NA VF1783 nitric oxide reductase regulator NorRchromosome I CDS2016595 1539 + 0.384016
NA VF2393 transcriptional regulator, MerR familychromosome I CDS2687791 420 - 0.352381
NA VF0877 transcriptional regulators, LysR familychromosome I CDS962378 906 - 0.390728
NA VF2093 RNA polymerase sigma-E factorchromosome I CDS2335758 579 - 0.416235
NA VF0656 transcription elongation factorchromosome I CDS721606 486 + 0.390947
NA VF1074 transcriptional regulator, AraC familychromosome I CDS1190184 822 - 0.328467
NA VF0040 transcriptional regulatory proteinchromosome I CDS48589 309 - 0.385113
NA VF1095 transcriptional regulators, LysR familychromosome I CDS1212339 936 + 0.391026
NA VF0463 transcriptional activator HlyUchromosome I CDS495330 297 + 0.360269
NA VF0296 hypothetical proteinchromosome I CDS303648 645 + 0.347287
NA VF2412 DNA-directed RNA polymerase beta' chainchromosome I CDS2705824 1674 - 0.440263
NA VF2155 carbohydrate diacid regulatorchromosome I CDS2417470 1146 + 0.351658
NA VF2460 ATP-dependent DNA helicase RecGchromosome I CDS2765122 2082 + 0.417867
NA VF0119 hypothetical proteinchromosome I CDS138141 480 + 0.429167
NA VF0574 transcriptional regulators, LysR familychromosome I CDS627742 993 + 0.354481
NA VF1066 transcriptional regulators, LysR familychromosome I CDS1182263 903 - 0.384275
NA VF1676 hypothetical proteinchromosome I CDS1890181 564 + 0.37766
NA VF1443 virulence gene repressor RsaLchromosome I CDS1597111 282 - 0.358156
NA VF0485 N utilization substance protein Achromosome I CDS520146 1488 + 0.410618
NA VF1720 maltose regulon regulatory protein MalIchromosome I CDS1940505 1023 + 0.391007
NA VF1545 transcriptional regulatorchromosome I CDS1731719 882 - 0.375283
NA VF2037 transcriptional regulator, Cro/CI familychromosome I CDS2272019 648 + 0.419753
NA VF0058 transcription termination factor Rhochromosome I CDS64954 1260 + 0.424603
NA VF0972 RNA polymerase ECF-type sigma factorchromosome I CDS1067080 546 + 0.395604
NA VF1063 transcriptional regulatorchromosome I CDS1177718 897 + 0.393534
NA VF0806 N-acetylglucosamine repressorchromosome I CDS885217 1215 - 0.390947
NA VF0055 ATP-dependent RNA helicase RhlBchromosome I CDS62978 1032 - 0.426357
NA VF0977 acetyltransferasechromosome I CDS1074909 423 + 0.35461
NA VF0896 DNA transformation protein TfoXchromosome I CDS986432 630 + 0.369841
NA VF1385 hypothetical proteinchromosome I CDS1536289 474 - 0.371308
NA VF2265 probable activator protein in leuABCD operonchromosome I CDS2550032 972 - 0.388889
NA VF0579 transcriptional regulators, LysR familychromosome I CDS631452 879 - 0.360637
NA VF0704 N utilization substance protein Bchromosome I CDS772125 468 + 0.395299
NA VF2315 Rrf2 family proteinchromosome I CDS2609391 426 - 0.375587
NA VF2314 ribonuclease Rchromosome I CDS2606790 2508 - 0.419856
NA VF2438 transcriptional repressor of FabBchromosome I CDS2745563 678 - 0.427729
NA VF1449 transcriptional regulator, LacI familychromosome I CDS1602819 1008 + 0.404762
NA VF0608 transcriptional regulator, LacI familychromosome I CDS667407 1005 + 0.348259
NA VF2080 GTP pyrophosphokinasechromosome I CDS2320490 2238 - 0.411528
NA VF0664 transcriptional regulator, RpiR familychromosome I CDS728194 879 + 0.370876
NA VF1354 ATP-dependent DNA helicase recGchromosome I CDS1500595 1389 - 0.364291
NA VF0444 ATP-dependent RNA helicase SrmBchromosome I CDS473441 1242 - 0.42351
NA VF0791 toxin transcriptional activator ToxRchromosome I CDS864962 882 - 0.370748
NA VF0606 glucokinasechromosome I CDS666067 936 + 0.318376
NA VF1722 transcriptional activator protein MetRchromosome I CDS1944413 912 + 0.395833
NA VF0104 GTP pyrophosphokinasechromosome I CDS122874 2124 - 0.431262
NA VF0559 Trp operon repressorchromosome I CDS608827 327 + 0.385321
NA VF1664 transcriptional regulator, TetR familychromosome I CDS1876140 600 + 0.376667
NA VF0864 hypothetical proteinchromosome I CDS949076 1725 - 0.408696
NA VF2391 DNA-binding protein Fischromosome I CDS2686837 375 + 0.384
NA VF0434 transcriptional regulator, AlgHchromosome I CDS462073 564 - 0.37234
NA VF1148 two-component response regulatorchromosome I CDS1276497 717 - 0.362622
NA VF2413 DNA-directed RNA polymerase beta chainchromosome I CDS2707569 3318 - 0.431585
NA VF0670 urease accessory protein UreGchromosome I CDS734350 621 - 0.439614
NA VF2496 serine/threonine protein kinasechromosome I CDS2806142 1326 + 0.382353
NA VF1408 glucokinasechromosome I CDS1560308 912 - 0.395833
NA VF2259 transcriptional regulatorchromosome I CDS2542465 663 + 0.348416
NA VF1260 transcriptional regulator, TetR familychromosome I CDS1405238 561 + 0.360071
NA VF1429 hypothetical proteinchromosome I CDS1586734 906 + 0.337748
NA VF1125 hypothetical proteinchromosome I CDS1247619 198 + 0.368687
NA VF1469 transcriptional regulator, MerR familychromosome I CDS1630561 264 + 0.378788
NA VF1378 transcriptional regulators, LysR familychromosome I CDS1527085 894 + 0.388143
NA VF2373 transcriptional regulator, DeoR familychromosome I CDS2667256 762 - 0.380577
NA VF1570 TorCAD operon transcriptional regulatory protein TorRchromosome I CDS1761965 699 - 0.384835
NA VF2299 hydrogen peroxide-inducible genes activatorchromosome I CDS2589707 900 - 0.413333
NA VF2449 RNA polymerase sigma-32 factorchromosome I CDS2757363 459 - 0.40305
NA VF1396 transcriptional regulatorchromosome I CDS1546627 657 + 0.391172
NA VF1881 negative regulator of flagellin synthesis FlgMchromosome I CDS2120388 312 + 0.400641
NA VF2404 transcriptional regulatorchromosome I CDS2698541 483 + 0.36853
NA VF1344 acetyltransferasechromosome I CDS1491273 468 - 0.363248
NA VF0591 glycine cleavage system transcriptional activatorchromosome I CDS649720 909 + 0.391639
NA VF1081 transcriptional regulator, TetR familychromosome I CDS1194818 585 - 0.365812
NA VF1713 ATP-dependent helicase, DinG familychromosome I CDS1931504 1959 - 0.404288
NA VF1787 transcriptional regulator, AraC familychromosome I CDS2021511 855 - 0.352047
NA VF2361 transcriptional regulator, ArsR familychromosome I CDS2656480 330 - 0.387879
NA VF1834 RNA polymerase sigma factor flagellar operon FliAchromosome I CDS2070816 732 - 0.400273
NA VF1633 fatty acid metabolism regulator proteinchromosome I CDS1838768 843 - 0.354686
NA VF2427 conserved hypothetical proteinchromosome I CDS2720276 432 + 0.30787
NA VF0871 transcriptional regulator, TetR familychromosome I CDS955990 543 - 0.362799
NA VF1530 transcriptional regulator, GntR familychromosome I CDS1714666 696 - 0.372126
NA VF2522 transcriptional regulator, TetR familychromosome I CDS2838420 567 + 0.359788
NA VF0120 transcription accessory proteinchromosome I CDS138816 2316 - 0.433506
NA VF0275 arginine repressor, ArgRchromosome I CDS282790 471 - 0.401274
NA VF0616 Rrf2 family proteinchromosome I CDS674473 507 + 0.410256
NA VF2408 regulatory protein CsgDchromosome I CDS2700782 645 - 0.252713
NA VF1690 transcriptional regulators, LysR familychromosome I CDS1905518 876 + 0.381279
NA VF1144 putative ATP-dependent RNA helicase RhlEchromosome I CDS1270231 1296 + 0.405093
NA VF1767 cold shock proteinchromosome I CDS1996686 222 + 0.432432
NA VF1255 transcriptional repressorchromosome I CDS1399547 1023 - 0.422287
NA VF0667 N-acetylmannosamine kinasechromosome I CDS731253 876 + 0.428082
NA VF1321 transcriptional regulators, LysR familychromosome I CDS1472359 912 + 0.387061
NA VF0136 3-deoxy-D-manno-octulosonic acid kinasechromosome I CDS153863 705 + 0.404255
NA VF0387 RNA polymerase sigma-54 factor RpoNchromosome I CDS421340 1470 - 0.40068
NA VF1716 transcriptional regulator, AraC familychromosome I CDS1935552 816 - 0.363971
NA VF0803 transcriptional activator RfaHchromosome I CDS881018 495 + 0.339394
NA VF0102 acetyltransferasechromosome I CDS120700 900 + 0.42
NA VF2411 DNA-directed RNA polymerase beta' chainchromosome I CDS2703286 2475 - 0.440404
NA VF0454 transcriptional regulatorchromosome I CDS484695 1338 + 0.382661
NA VF2275 transcriptional repressor CytRchromosome I CDS2564816 1008 + 0.414683
NA VF1542 acetyltransferasechromosome I CDS1728712 477 - 0.33543
NA VF2343 transcriptional regulatory protein CpxRchromosome I CDS2638944 684 + 0.383041
NA VF1510 transcriptional regulatorchromosome I CDS1686551 900 + 0.331111
NA VF1320 SIR2 family proteinchromosome I CDS1471488 714 - 0.401961
NA VF0150 hypothetical proteinchromosome I CDS169005 978 - 0.253579
NA VF1086 hypothetical proteinchromosome I CDS1199931 858 + 0.315851
NA VF0056 ATP-dependent RNA helicase RhlBchromosome I CDS64060 216 - 0.472222
NA VF0649 transcriptional regulators, LysR familychromosome I CDS710001 873 + 0.400916
NA VF0699 putative regulatory proteinchromosome I CDS768122 450 + 0.393333
NA VF1578 transcriptional regulator, AsnC familychromosome I CDS1768877 468 - 0.367521
NA VF1333 transcriptional regulators, LysR familychromosome I CDS1483911 957 + 0.380355
NA VF2442 LexA repressorchromosome I CDS2750335 627 - 0.424242
NA VF1979 transcriptional regulators, LysR familychromosome I CDS2216928 930 + 0.347312
NA VF1475 transcriptional regulators, LysR familychromosome I CDS1635290 900 - 0.413333
NA VF1419 transcriptional regulators, LysR familychromosome I CDS1573236 915 - 0.380328
NA VF1654 IAA acetyltransferasechromosome I CDS1867668 501 - 0.381238
NA VF1072 transcriptional regulators, LysR familychromosome I CDS1188228 939 + 0.365282
NA VF1909 nitrate/nitrite response regulator protein NarPchromosome I CDS2147186 612 + 0.385621
NA VF1439 putative ATP-dependent RNA helicase RhlEchromosome I CDS1593953 1266 - 0.402054
NA VF0270 superfamily II DNA/RNA helicases, SNF2 familychromosome I CDS274361 2859 + 0.409934
NA VF1460 transcriptional regulators, LysR familychromosome I CDS1618790 846 - 0.378251
NA VF2268 Met repressorchromosome I CDS2555261 321 + 0.417445
NA VF2490 hypothetical proteinchromosome I CDS2799317 471 + 0.382166