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2024-05-14 00:39:51

Gene list

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COG category: Transcription
Genomic element: chromosome 2

Number of genes found: 180

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Vibrio parahaemolyticus RIMD 2210633, O3:K6
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
VPA0021 response regulatorchromosome 2 CDS18940 792 + 0.467172
VPA0034 putative transcriptional regulator, GntR familychromosome 2 CDS28667 381 - 0.461942
VPA0041 transcriptional regulator, LysR familychromosome 2 CDS33962 900 + 0.461111
VPA0053 putative transcription regulator proteinchromosome 2 CDS44076 591 + 0.443316
VPA0065 putative LysR-family transcriptional regulatory proteinchromosome 2 CDS56828 888 + 0.494369
VPA0073 putative transcriptional regulatorchromosome 2 CDS64365 870 + 0.513793
VPA0076 putative regulatorchromosome 2 CDS67900 798 - 0.454887
VPA0091 transcriptional regulator, AsnC familychromosome 2 CDS83908 441 + 0.492063
VPA0099 hypothetical proteinchromosome 2 CDS91472 246 - 0.463415
VPA0101 hypothetical proteinchromosome 2 CDS93491 768 + 0.375
VPA0105 putative transcriptional regulator, LysR familychromosome 2 CDS98349 843 - 0.45433
VPA0107 putative transcriptional regulatorchromosome 2 CDS100765 942 + 0.470276
VPA0115 conserved hypothetical proteinchromosome 2 CDS107093 1143 + 0.468941
VPA0118 putative transcriptional regulatorchromosome 2 CDS110996 1458 - 0.485597
VPA0122 hypothetical proteinchromosome 2 CDS114561 528 - 0.492424
VPA0124 putative acetyltransferasechromosome 2 CDS115735 471 - 0.458599
VPA0132 putative transcriptional activatorchromosome 2 CDS123765 663 - 0.496229
VPA0148 putative transcriptional regulator CpxRchromosome 2 CDS143183 666 + 0.451952
VPA0175 transcriptional regulator, LysR familychromosome 2 CDS170468 891 - 0.452301
VPA0177 putative transcriptional regulator, AraC/XylS familychromosome 2 CDS172309 867 + 0.461361
VPA0200 conserved hypothetical proteinchromosome 2 CDS200691 1557 - 0.479769
VPA0214 putative transcriptional regulator (repressor protein)chromosome 2 CDS217449 687 - 0.496361
VPA0216 putative transcription regulator proteinchromosome 2 CDS218613 924 - 0.479437
VPA0232 putative transcriptional regulatorchromosome 2 CDS236237 1029 + 0.48688
VPA0237 hypothetical proteinchromosome 2 CDS242149 411 + 0.445255
VPA0240 putative repressor protein PhnRchromosome 2 CDS245524 705 + 0.476596
VPA0249 putative transcription activatorchromosome 2 CDS253397 873 + 0.47079
VPA0251 transcriptional regulator, LysR familychromosome 2 CDS255211 876 - 0.439498
VPA0262 LfgMchromosome 2 CDS264553 282 - 0.446809
VPA0290 putative transcriptional regulatorchromosome 2 CDS290549 891 + 0.459035
VPA0293 transcriptional regulatorchromosome 2 CDS292318 537 + 0.461825
VPA0299 putative transcription regulator proteinchromosome 2 CDS299493 963 - 0.446521
VPA0303 putative regulatory proteinchromosome 2 CDS303524 741 + 0.479082
VPA0315 putative transcriptional regulator, LysR familychromosome 2 CDS313565 885 + 0.476836
VPA0331 putative transcription regulator proteinchromosome 2 CDS325761 882 - 0.492063
VPA0335 SoxR proteinchromosome 2 CDS328206 438 + 0.468037
VPA0355 putative transcriptional regulatorchromosome 2 CDS346936 729 + 0.477366
VPA0358 putative transcriptional regulator, LuxR familychromosome 2 CDS352083 654 - 0.461774
VPA0359 hypothetical proteinchromosome 2 CDS352736 816 - 0.45098
VPA0365 putative transcriptional regulator proteinchromosome 2 CDS361202 882 - 0.453515
VPA0369 transcriptional regulator, LuxR familychromosome 2 CDS365175 807 - 0.439901
VPA0376 putative transcriptional regulator, LysR familychromosome 2 CDS373548 870 + 0.483908
VPA0381 putative transcription regulatorchromosome 2 CDS376257 1005 - 0.507463
VPA0387 transcriptional regulator, LysR familychromosome 2 CDS381824 936 + 0.477564
VPA0388 putative regulatory proteinchromosome 2 CDS382712 912 - 0.473684
VPA0390 ATP-dependent RNA helicase RhlEchromosome 2 CDS386830 1569 - 0.490121
VPA0399 putative aminotransferasechromosome 2 CDS396178 1149 - 0.494343
VPA0400 putative trasncription regulatorchromosome 2 CDS397452 870 + 0.457471
VPA0404 transcriptional regulator, AraC/XylS familychromosome 2 CDS401008 789 + 0.457541
VPA0420 LuxTchromosome 2 CDS413616 462 + 0.409091
VPA0439 hypothetical proteinchromosome 2 CDS428376 636 + 0.471698
VPA0448 hypothetical proteinchromosome 2 CDS440038 735 + 0.431293
VPA0456 putative transcriptional regulatorchromosome 2 CDS449099 891 - 0.481481
VPA0462 hypothetical proteinchromosome 2 CDS457611 453 - 0.432671
VPA0495 putative transcriptional regulator, AraC/XylS familychromosome 2 CDS501777 801 + 0.475655
VPA0497 putative regulatory protein, ArsR familychromosome 2 CDS503760 342 - 0.444444
VPA0503 putative transcriptional regulatorchromosome 2 CDS510043 519 + 0.402698
VPA0507 hypothetical proteinchromosome 2 CDS512960 336 - 0.485119
VPA0519 transcriptional regulator, LysR familychromosome 2 CDS525907 888 - 0.454955
VPA0531 transcriptional regulator, AraC/XylS familychromosome 2 CDS535545 837 - 0.467145
VPA0533 putative acetyltransferasechromosome 2 CDS537313 423 + 0.437352
VPA0552 cold shock DNA-binding domain proteinchromosome 2 CDS551492 210 - 0.428571
VPA0570 hypothetical proteinchromosome 2 CDS569384 489 - 0.413088
VPA0573 transcriptional regulator, LysR familychromosome 2 CDS572513 879 - 0.463026
VPA0583 putative ATP-dependent RNA helicasechromosome 2 CDS581065 1251 + 0.464428
VPA0590 putative ATP-dependent RNA helicasechromosome 2 CDS587620 1293 + 0.469451
VPA0593 putative transcriptional regulatorchromosome 2 CDS593170 735 - 0.482993
VPA0599 putative LysR-family transcriptional regulatorchromosome 2 CDS599320 927 - 0.413161
VPA0602 putative transcription activator NahRchromosome 2 CDS604007 975 + 0.368205
VPA0606 putative AraC-type regulatory proteinchromosome 2 CDS607602 804 - 0.437811
VPA0607 exoribonuclease IIchromosome 2 CDS608477 2007 - 0.461385
VPA0608 ATP-dependent RNA helicase DeaDchromosome 2 CDS610863 1932 + 0.489648
VPA0619 putative transcriptional regulatorchromosome 2 CDS623999 375 - 0.44
VPA0641 putative transcriptional regulator, LysR familychromosome 2 CDS646201 834 - 0.495204
VPA0662 transcriptional regulator, MerR familychromosome 2 CDS663657 387 - 0.426357
VPA0663 putative transcriptional regulator, AraC/XylS familychromosome 2 CDS664251 1083 - 0.437673
VPA0678 hypothetical proteinchromosome 2 CDS700147 387 - 0.449612
VPA0682 putaive transcriptional regulator, LysR familychromosome 2 CDS706658 870 - 0.427586
VPA0692 putative LysR-type regulatorchromosome 2 CDS717946 930 + 0.454839
VPA0700 hypothetical proteinchromosome 2 CDS724913 1638 - 0.45177
VPA0708 putative acetyltransferasechromosome 2 CDS734727 549 + 0.455373
VPA0716 putative transcriptional regulator proteinchromosome 2 CDS747659 984 + 0.411585
VPA0717 putative transcriptional regulator, LysR familychromosome 2 CDS749250 909 + 0.40374
VPA0733 putative transcriptional regulator, LysR familychromosome 2 CDS762953 855 - 0.409357
VPA0734 putative transcriptional regulator, LysR familychromosome 2 CDS763975 999 - 0.398398
VPA0738 putative fimbrial protein Z, transcriptional regulator (LuxR/UhpA family)chromosome 2 CDS771833 597 + 0.435511
VPA0740 putative transcription regulator proteinchromosome 2 CDS773867 990 + 0.444444
VPA0741 putative fimbrial protein Z, transcriptional regulator (LuxR/UhpA family)chromosome 2 CDS774867 621 - 0.444444
VPA0759 putative N-acetyltransferasechromosome 2 CDS789522 486 + 0.442387
VPA0764 putative transcriptional regulator CitBchromosome 2 CDS795439 678 + 0.469027
VPA0785 putative transcriptional regulatorchromosome 2 CDS814071 420 - 0.419048
VPA0794 putative transcriptional regulator, LysR familychromosome 2 CDS821655 921 - 0.45494
VPA0804 transcriptional regulator, HTH_3 familychromosome 2 CDS833236 624 + 0.442308
VPA0806 transcriptional regulator, TetR familychromosome 2 CDS835311 726 - 0.451791
VPA0814 fructose repressorchromosome 2 CDS846579 981 + 0.468909
VPA0830 putative AraC-family transcriptional regulatory proteinchromosome 2 CDS864466 894 + 0.449664
VPA0839 hypothetical proteinchromosome 2 CDS875227 1752 + 0.438927
VPA0845 ATP-dependent RNA helicase, DEAD box familychromosome 2 CDS881054 1266 + 0.457346
VPA0852 transcriptional regulator, LysR familychromosome 2 CDS887541 906 + 0.462472
VPA0883 transcriptional regulator, LysR familychromosome 2 CDS926872 888 + 0.451577
VPA0910 putative phage-related proteinchromosome 2 CDS945575 264 + 0.439394
VPA0912 putative transcriptional regulatorchromosome 2 CDS946757 834 + 0.36211
VPA0919 transcriptional regulatorchromosome 2 CDS951608 663 - 0.449472
VPA0938 putative AraC-family transcriptional regulatory proteinchromosome 2 CDS969644 858 - 0.477855
VPA0947 transcriptional regulator, ArsR familychromosome 2 CDS981376 309 - 0.433657
VPA0961 putative transcriptional regulatorchromosome 2 CDS1003420 885 + 0.451977
VPA0964 response regulator (repressor) in two-component regulatory system with UhpB (LuxR/UhpA family)chromosome 2 CDS1007129 609 + 0.481117
VPA0974 putative AraC-family transcriptional regulatory proteinchromosome 2 CDS1020082 894 - 0.46868
VPA0988 regulator of nucleoside diphosphate kinasechromosome 2 CDS1034885 408 + 0.443627
VPA1006 transcriptional regulator, LysR familychromosome 2 CDS1059849 903 - 0.456257
VPA1017 transcriptional regulator, AraC/XylS familychromosome 2 CDS1070897 780 + 0.435897
VPA1044 hypothetical proteinchromosome 2 CDS1103236 2145 + 0.402797
VPA1052 putative TetR-familychromosome 2 CDS1110593 576 + 0.453125
VPA1076 putative two-component response regulatorchromosome 2 CDS1135959 669 - 0.452915
VPA1082 ribose operon repressorchromosome 2 CDS1141173 1008 - 0.452381
VPA1114 putative transcriptional regulator BetIchromosome 2 CDS1175972 600 - 0.461667
VPA1124 putative transcriptional regulatorchromosome 2 CDS1187513 387 + 0.428941
VPA1136 putative transcriptional regulator; also putative ATP-binding component of a transport systemchromosome 2 CDS1200544 1416 - 0.469633
VPA1142 putative transcriptional regulator, MerR familychromosome 2 CDS1206020 357 - 0.417367
VPA1145 hypothetical proteinchromosome 2 CDS1208813 417 - 0.41247
VPA1164 hypothetical proteinchromosome 2 CDS1230083 408 + 0.473039
VPA1178 transcriptional regulator, SorC familychromosome 2 CDS1246690 1002 - 0.482036
VPA1195 nitrate/nitrite response regulator proteinchromosome 2 CDS1268344 627 - 0.476874
VPA1214 putative transcriptional regulatorchromosome 2 CDS1287565 450 - 0.455556
VPA1219 putative transcription regulatorchromosome 2 CDS1292017 465 - 0.475269
VPA1233 putative transcriptional regulator, LysR familychromosome 2 CDS1307293 915 - 0.468852
VPA1234 putative transcriptional regulatorchromosome 2 CDS1308227 456 - 0.442982
VPA1237 putative GntR-family regulatory proteinchromosome 2 CDS1310160 1437 - 0.475296
VPA1246 hypothetical proteinchromosome 2 CDS1320037 759 + 0.437418
VPA1276 putative DNA-binding response regulatorchromosome 2 CDS1355471 714 + 0.481793
VPA1286 putative transcriptional regulatorchromosome 2 CDS1364677 417 - 0.465228
VPA1289 cold shock transcriptional regulator CspAchromosome 2 CDS1368569 213 + 0.413146
VPA1299 putative transcriptional regulatorchromosome 2 CDS1375889 567 - 0.442681
VPA1332 putative transcriptional regulator ToxRchromosome 2 CDS1407155 762 + 0.335958
VPA1334 hypothetical proteinchromosome 2 CDS1408386 375 - 0.317333
VPA1348 putative transcriptional activator ToxRchromosome 2 CDS1418677 552 - 0.376812
VPA1391 hypothetical proteinchromosome 2 CDS1461902 207 - 0.415459
VPA1393 hypothetical proteinchromosome 2 CDS1462860 1266 + 0.402844
VPA1415 putative transcriptional regulatorchromosome 2 CDS1487540 600 + 0.431667
VPA1423 transcriptional regulatorchromosome 2 CDS1496185 843 - 0.427046
VPA1432 putative two-component response regulatorchromosome 2 CDS1507964 699 - 0.470672
VPA1446 putative transcriptional regulator, LuxR familychromosome 2 CDS1539327 657 - 0.366819
VPA1447 putative transcriptional regulator, LuxR familychromosome 2 CDS1540209 672 - 0.383929
VPA1468 ATP-dependent RNA helicase, DEAD box familychromosome 2 CDS1567503 1347 - 0.460282
VPA1472 transcriptional regulator, MerR familychromosome 2 CDS1572041 813 - 0.458795
VPA1487 putative acetyltransferasechromosome 2 CDS1588366 501 + 0.483034
VPA1497 transcriptional regulator, LysR familychromosome 2 CDS1600189 900 - 0.477778
VPA1500 conserved hypothetical proteinchromosome 2 CDS1604490 348 - 0.462644
VPA1516 putative two-component response regulatorchromosome 2 CDS1622611 762 - 0.47769
VPA1522 transcriptional regulator, LysR familychromosome 2 CDS1625691 930 + 0.489247
VPA1530 putative glycine cleavage operon activatorchromosome 2 CDS1632183 891 + 0.485971
VPA1555 flagellar-specific transcription initiation factor sigma, LafSchromosome 2 CDS1655300 729 + 0.496571
VPA1562 putative transcriptional regulatorchromosome 2 CDS1659702 546 + 0.468864
VPA1563 putative transcriptional regulatorchromosome 2 CDS1660346 465 + 0.443011
VPA1571 putative acetyltransferasechromosome 2 CDS1668246 456 - 0.495614
VPA1573 hypothetical proteinchromosome 2 CDS1670088 471 - 0.464968
VPA1575 putative transcriptional regulator, LysR familychromosome 2 CDS1671856 969 + 0.457172
VPA1589 transcriptional regulator, LysR familychromosome 2 CDS1684533 924 + 0.504329
VPA1592 hypothetical proteinchromosome 2 CDS1686659 1437 + 0.472512
VPA1596 putative acetyltransferasechromosome 2 CDS1693707 489 - 0.435583
VPA1607 putative transcriptional regulatorchromosome 2 CDS1705382 891 + 0.476992
VPA1623 malT regulatory proteinchromosome 2 CDS1725168 2709 + 0.483942
VPA1633 hypothetical proteinchromosome 2 CDS1736304 189 - 0.42328
VPA1648 hypothetical proteinchromosome 2 CDS1758919 1728 - 0.477431
VPA1665 putative two-component response regulatorchromosome 2 CDS1785984 708 - 0.525424
VPA1678 putative transcriptional regulator, AraC/XylS familychromosome 2 CDS1799737 840 + 0.44881
VPA1682 transcriptional regulator, MarR familychromosome 2 CDS1802892 459 + 0.477124
VPA1687 putative transcriptional regulatorchromosome 2 CDS1807412 957 - 0.479624
VPA1689 putative transcriptional regulatorchromosome 2 CDS1808495 687 + 0.45706
VPA1690 RNA polymerase sigma-70 factor, ECF subfamilychromosome 2 CDS1809266 486 + 0.460905
VPA1694 putative D-serine dehydratase (deaminase) transcriptional activatorchromosome 2 CDS1812025 933 - 0.470525
VPA1697 putative transcriptional regulatorchromosome 2 CDS1815516 834 - 0.448441
VPA1699 ATP-dependent RNA helicase, DEAD box familychromosome 2 CDS1817201 1239 - 0.479419
VPA1701 putative transcriptional regulatory proteinchromosome 2 CDS1819964 792 - 0.481061
VPA1713 putative transcriptional regulatorchromosome 2 CDS1830852 924 + 0.458874
VPA1717 transcriptional regulator, AsnC familychromosome 2 CDS1836527 477 - 0.442348
VPA1727 transcriptional regulator, AraC/XylS familychromosome 2 CDS1846049 813 - 0.466175
VPA1741 conserved hypothetical proteinchromosome 2 CDS1863467 852 - 0.488263
VPA1747 putative transcriptional regulator, LysR familychromosome 2 CDS1868943 912 - 0.460526
VPA1751 ParB family proteinchromosome 2 CDS1874911 975 - 0.46359