TitleGenColors Logo
spacer
Home spacerGenomes
spacerMethods
spacerDocumentation spacerContactspacer spacerLeibniz FLI
spacer
QuickSearch
2024-05-13 21:22:12

Gene list

Applied filters:

COG category: Transcription
Genomic element: chromosome 1

Number of genes found: 196

Free access
Sort by:

 

Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Vibrio parahaemolyticus RIMD 2210633, O3:K6
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
VP0016 hypothetical proteinchromosome 1 CDS14119 417 + 0.482014
VP0027 putative transcriptional regulator, LysR familychromosome 1 CDS24591 993 + 0.495468
VP0034 transcriptional activator IlvYchromosome 1 CDS39060 891 - 0.429854
VP0040 transcriptional regulator, TetR familychromosome 1 CDS46404 582 - 0.47079
VP0055 putative RNA polymerase ECF-type sigma factorchromosome 1 CDS63253 573 - 0.47644
VP0057 hypothetical proteinchromosome 1 CDS65314 1353 - 0.478197
VP0058 gluconate utilization system Gnt-I transcriptional repressorchromosome 1 CDS66784 1110 + 0.481982
VP0059 putative transcriptional regulator, LysR familychromosome 1 CDS67949 936 + 0.498932
VP0067 putative LysR-family regulatory proteinchromosome 1 CDS75455 933 + 0.468382
VP0072 transcriptional regulator AsnCchromosome 1 CDS81432 621 - 0.466989
VP0105 conserved hypothetical proteinchromosome 1 CDS112102 429 + 0.428904
VP0127 conserved hypothetical proteinchromosome 1 CDS136029 918 + 0.511983
VP0150 conserved hypothetical proteinchromosome 1 CDS158944 2322 - 0.514212
VP0152 transcription elongation factor GreBchromosome 1 CDS163513 492 + 0.445122
VP0154 transcriptional regulator OmpRchromosome 1 CDS164729 720 + 0.488889
VP0157 ATP-dependent DNA helicase RecGchromosome 1 CDS168535 2082 - 0.504803
VP0159 guanosine-3',5'-bis(diphosphate)3'-pyrophosphohy drolasechromosome 1 CDS171476 2121 - 0.490806
VP0160 DNA-directed RNA polymerase, omega subunitchromosome 1 CDS173636 273 - 0.490842
VP0180 transcriptional regulator, TetR familychromosome 1 CDS193323 591 - 0.446701
VP0196 conserved hypothetical proteinchromosome 1 CDS206439 717 + 0.429568
VP0208 putative integral membrane proteinchromosome 1 CDS218339 1107 + 0.29178
VP0243 conserved hypothetical proteinchromosome 1 CDS255983 615 - 0.487805
VP0252 transcriptional repressor, LacI familychromosome 1 CDS262927 1008 - 0.482143
VP0282 DNA-directed RNA polymerase, alpha subunitchromosome 1 CDS279704 993 + 0.453172
VP0288 ATP-dependent RNA helicase DbpAchromosome 1 CDS283987 1380 + 0.480435
VP0324 arginine repressorchromosome 1 CDS319915 522 - 0.452107
VP0350 transcriptional regulator, LysR familychromosome 1 CDS344763 960 + 0.472917
VP0355 putative LuxZchromosome 1 CDS352585 669 - 0.442451
VP0358 transcriptional regulator, DeoR familychromosome 1 CDS355255 762 + 0.461942
VP0361 putative two component response regulator transcription regulator proteinchromosome 1 CDS358648 693 + 0.481962
VP0367 putative glycerol metabolism operon regulatory proteinchromosome 1 CDS366397 1926 - 0.454309
VP0368 mannitol operon repressorchromosome 1 CDS368471 531 - 0.453861
VP0377 putative CFA/I fimbrial subunit Dchromosome 1 CDS378312 726 + 0.329201
VP0399 putative transcriptional regulatorchromosome 1 CDS397941 165 + 0.460606
VP0403 hypothetical proteinchromosome 1 CDS403098 336 - 0.458333
VP0404 RNA polymerase sigma factor RpoDchromosome 1 CDS403985 1863 - 0.454106
VP0475 transcriptional regulator, LysR familychromosome 1 CDS481905 861 - 0.422764
VP0489 aerobic respiration control protein FexAchromosome 1 CDS505432 717 - 0.456067
VP0505 ATP-dependent RNA helicase SrmBchromosome 1 CDS520166 1224 - 0.490196
VP0514 sigma-54 dependent transcriptional regulatorchromosome 1 CDS531262 1335 + 0.46367
VP0527 transcriptional activator protein NhaRchromosome 1 CDS544705 891 + 0.447811
VP0529 transcriptional activator HlyUchromosome 1 CDS545888 297 + 0.451178
VP0538 response regulatorchromosome 1 CDS554637 729 - 0.452675
VP0553 Trp operon repressorchromosome 1 CDS571212 312 + 0.455128
VP0569 DNA-binding response regulator PhoBchromosome 1 CDS592203 690 + 0.46087
VP0581 transcriptional regulator, LysR familychromosome 1 CDS607209 906 + 0.454746
VP0595 conserved hypothetical proteinchromosome 1 CDS621859 507 + 0.47929
VP0624 putative transcriptional regulator, LysR familychromosome 1 CDS653361 924 + 0.46645
VP0635 putative transcriptional regulator, LysR familychromosome 1 CDS666070 891 - 0.460157
VP0641 hypothetical proteinchromosome 1 CDS671228 612 + 0.480392
VP0678 conserved hypothetical proteinchromosome 1 CDS711757 450 + 0.46
VP0683 N utilization substance protein Bchromosome 1 CDS715923 468 + 0.459402
VP0692 transcriptional regulator, LysR familychromosome 1 CDS725372 921 + 0.469055
VP0709 trehalose operon repressorchromosome 1 CDS741949 948 + 0.456751
VP0713 hypothetical proteinchromosome 1 CDS747406 1521 - 0.456279
VP0771 polar flagellar FlgMchromosome 1 CDS808122 318 - 0.468553
VP0820 ToxRchromosome 1 CDS847892 879 - 0.444824
VP0825 putative transcriptional activator RfaHchromosome 1 CDS854776 501 + 0.429142
VP0828 N-acetylglucosamine repressorchromosome 1 CDS858970 1215 - 0.451852
VP0859 hypothetical proteinchromosome 1 CDS893489 231 + 0.437229
VP0865 ATP-dependent helicase, DinG familychromosome 1 CDS898070 1911 + 0.470958
VP0877 transcriptional regulator, LysR familychromosome 1 CDS908967 945 + 0.479365
VP0903 RhlEchromosome 1 CDS935077 1236 + 0.487864
VP0938 hypothetical proteinchromosome 1 CDS975876 591 - 0.428088
VP0947 transcriptional regulator, AsnC familychromosome 1 CDS986425 465 + 0.415054
VP0975 transcription-repair coupling factorchromosome 1 CDS1014846 3462 - 0.479203
VP1007 ATP-dependent helicase, DinG familychromosome 1 CDS1052659 2076 - 0.459056
VP1012 cold shock-like protein CspDchromosome 1 CDS1060628 240 - 0.445833
VP1021 conserved hypothetical proteinchromosome 1 CDS1069150 249 - 0.373494
VP1028 conserved hypothetical proteinchromosome 1 CDS1077946 591 - 0.436548
VP1030 transcriptional regulator, LacI familychromosome 1 CDS1079009 1005 - 0.442786
VP1032 DNA-binding response regulator TorRchromosome 1 CDS1081364 714 + 0.455182
VP1073 putative immunity repressor proteinchromosome 1 CDS1124767 243 - 0.440329
VP1076 hypothetical proteinchromosome 1 CDS1126513 585 - 0.394872
VP1081 hypothetical proteinchromosome 1 CDS1134207 792 + 0.405303
VP1093 putative transcriptional regulatorchromosome 1 CDS1150648 453 + 0.434879
VP1101 cys regulon transcriptional activatorchromosome 1 CDS1158370 975 + 0.46359
VP1104 leucine-responsive regulatory proteinchromosome 1 CDS1161971 495 + 0.440404
VP1154 putative transcriptional regulatorchromosome 1 CDS1210995 885 - 0.465537
VP1172 psp operon transcriptional activatorchromosome 1 CDS1229874 1011 - 0.474777
VP1173 phage shock protein Achromosome 1 CDS1231117 672 + 0.431548
VP1175 phage shock protein Cchromosome 1 CDS1231999 420 + 0.421429
VP1190 putative sigma-54 dependent transcriptional regulatorchromosome 1 CDS1251834 1530 - 0.475817
VP1209 putative transcriptional regulatorchromosome 1 CDS1269948 516 + 0.453488
VP1212 DNA-binding response regulatorchromosome 1 CDS1272506 660 - 0.460606
VP1214 helicase-related proteinchromosome 1 CDS1273742 1752 - 0.47032
VP1229 Na+/H+-antiporter proteinchromosome 1 CDS1294988 627 + 0.425837
VP1236 conserved hypothetical proteinchromosome 1 CDS1303225 855 - 0.431579
VP1241 conserved hypothetical proteinchromosome 1 CDS1309223 588 + 0.401361
VP1277 histidine utilization repressorchromosome 1 CDS1354209 708 - 0.433616
VP1284 hypothetical proteinchromosome 1 CDS1361432 810 + 0.401235
VP1285 putative transcriptional regulatorchromosome 1 CDS1362493 861 + 0.450639
VP1316 transcriptional regulator, LysR familychromosome 1 CDS1395987 870 + 0.464368
VP1327 hypothetical proteinchromosome 1 CDS1406784 765 - 0.423529
VP1328 putative transcription regulatorchromosome 1 CDS1407573 675 - 0.432593
VP1367 putative transcriptional regulator, LysR familychromosome 1 CDS1452962 900 + 0.451111
VP1373 putative acetyltransferasechromosome 1 CDS1456601 477 + 0.438155
VP1382 transcriptional regulator, LysR familychromosome 1 CDS1467486 981 - 0.464832
VP1391 putative transcriptional regulatorchromosome 1 CDS1491226 1632 - 0.470588
VP1399 hypothetical proteinchromosome 1 CDS1501502 945 + 0.443386
VP1400 hypothetical proteinchromosome 1 CDS1502624 2061 + 0.422125
VP1407 putative transcriptional regulatorchromosome 1 CDS1511565 453 - 0.399558
VP1494 ROK family proteinchromosome 1 CDS1604363 909 + 0.475248
VP1524 nicotinatemononucleotide:5,6-dimethylbenzimidazo lephosphoribosyltransferasechromosome 1 CDS1636144 726 + 0.435262
VP1586 putative phage protein, Vpf148 [bacteriophage VfO3K6]chromosome 1 CDS1679942 267 + 0.419476
VP1643 putative acetyltransferasechromosome 1 CDS1758807 483 - 0.426501
VP1649 transcriptional regulator, GntR familychromosome 1 CDS1767627 714 - 0.469188
VP1676 putative transcriptional regulatorchromosome 1 CDS1791719 918 - 0.464052
VP1699 transcriptional regulator ExsAchromosome 1 CDS1809713 861 - 0.45993
VP1704 sigma-54 dependent transcriptional regulatorchromosome 1 CDS1814629 1761 + 0.46167
VP1711 response regulatorchromosome 1 CDS1823001 687 - 0.474527
VP1722 L-2,4-diaminobutyric acid acetyltransferasechromosome 1 CDS1835574 546 - 0.424908
VP1734 DNA-binding response regulatorchromosome 1 CDS1849292 657 + 0.480974
VP1763 transcriptional regulator, MarR familychromosome 1 CDS1877784 483 - 0.47412
VP1765 hypothetical proteinchromosome 1 CDS1879334 828 - 0.443237
VP1778 putative transcriptional regulatorchromosome 1 CDS1894516 558 - 0.435484
VP1789 hypothetical proteinchromosome 1 CDS1902266 495 - 0.408081
VP1794 conserved hypothetical proteinchromosome 1 CDS1905641 546 - 0.413919
VP1827 putative spermine/spermidine acetyltransferase BltDchromosome 1 CDS1927502 549 - 0.377049
VP1861 hypothetical proteinchromosome 1 CDS1946182 528 - 0.435606
VP1869 transcriptional regulator TyrRchromosome 1 CDS1950990 1545 - 0.457605
VP1882 hypothetical proteinchromosome 1 CDS1967190 579 + 0.442142
VP1889 cold shock transcriptional regulator CspAchromosome 1 CDS1971411 213 + 0.370892
VP1890 putative virulence-associated protein VacB/RNase Rchromosome 1 CDS1971918 2226 + 0.408805
VP1896 transcriptional regulator, GntR familychromosome 1 CDS1980023 1392 - 0.457615
VP1906 transcriptional regulator, MarR familychromosome 1 CDS1991617 477 + 0.448637
VP1907 transcriptional regulator, LuxR familychromosome 1 CDS1992131 639 - 0.463224
VP1945 transcriptional regulator, LuxR familychromosome 1 CDS2037468 645 - 0.455814
VP1976 transcriptional activator MetRchromosome 1 CDS2067286 912 + 0.47807
VP1983 putaive two-component response regulatorchromosome 1 CDS2077653 678 + 0.479351
VP1985 hypothetical proteinchromosome 1 CDS2079712 1245 - 0.462651
VP1988 putative transcriptional regulator, LysR familychromosome 1 CDS2082860 861 - 0.470383
VP1993 putative transcriptional regulator proteinchromosome 1 CDS2088366 915 - 0.440437
VP2001 conserved hypothetical proteinchromosome 1 CDS2096464 492 - 0.445122
VP2008 transcriptional regulator, LysR familychromosome 1 CDS2102522 897 + 0.488294
VP2038 transcriptional regulator, ROK familychromosome 1 CDS2138554 1218 - 0.458128
VP2071 fatty acid metabolism regulator proteinchromosome 1 CDS2175223 840 - 0.434524
VP2144 putative transcription regulator proteinchromosome 1 CDS2255912 255 - 0.454902
VP2184 AphB/LysR familychromosome 1 CDS2293506 876 + 0.460046
VP2210 RNA polymerase sigma-70 factor, ECF subfamilychromosome 1 CDS2324635 576 + 0.418403
VP2232 flagellar-specific RNA polymerase sigma factor FliAchromosome 1 CDS2345067 735 - 0.438095
VP2341 hypothetical proteinchromosome 1 CDS2452048 558 - 0.458781
VP2358 RNA polymerase sigma-70 factor, ECF subfamilychromosome 1 CDS2468934 585 - 0.422222
VP2378 transcriptional regulator, LysR familychromosome 1 CDS2494265 927 + 0.473571
VP2387 transcriptional regulator, DeoR familychromosome 1 CDS2503015 792 + 0.489899
VP2393 transcriptional regulator, LacI familychromosome 1 CDS2509348 999 + 0.482482
VP2396 LacI-family regulatory proteinchromosome 1 CDS2513178 1026 + 0.482456
VP2402 regulator of ebg operonchromosome 1 CDS2519157 987 + 0.453901
VP2406 putative LysR-like regular proteinchromosome 1 CDS2525589 921 - 0.478827
VP2427 putative transcriptional regulator, LysR familychromosome 1 CDS2544828 927 + 0.455232
VP2450 transcriptional regulator, MarR familychromosome 1 CDS2571535 414 - 0.405797
VP2457 N utilization substance protein Achromosome 1 CDS2580248 1488 - 0.455645
VP2466 transcription elongation factor GreAchromosome 1 CDS2588725 474 - 0.43038
VP2516 OpaRchromosome 1 CDS2653215 615 + 0.445528
VP2520 pyruvate dehydrogenase complex repressorchromosome 1 CDS2660268 768 - 0.460938
VP2553 RNA polymerase sigma factor RpoSchromosome 1 CDS2697810 960 - 0.452083
VP2564 GTP pyrophosphokinasechromosome 1 CDS2708635 2220 - 0.480631
VP2572 ribonuclease IIIchromosome 1 CDS2718290 678 - 0.470501
VP2578 RNA polymerase sigma-E factorchromosome 1 CDS2723994 579 - 0.438687
VP2595 chromosome initiation inhibitorchromosome 1 CDS2737821 897 - 0.449275
VP2603 iron-regulated virulence regulatory protein homologchromosome 1 CDS2747164 894 + 0.487696
VP2612 conserved hypothetical proteinchromosome 1 CDS2756050 570 + 0.461404
VP2632 transcriptional regulator, LacI familychromosome 1 CDS2783178 1011 - 0.441147
VP2648 putative acetyltransferasechromosome 1 CDS2802058 519 + 0.466281
VP2659 BolA/YrbA family proteinchromosome 1 CDS2811373 255 - 0.447059
VP2670 RNA polymerase sigma-54 factorchromosome 1 CDS2818936 1467 + 0.461486
VP2682 RNA polymerase-associated protein HepAchromosome 1 CDS2829447 2910 - 0.491065
VP2710 transcriptional regulator, LuxR familychromosome 1 CDS2865626 645 + 0.448062
VP2752 transcriptional regulator, LysR familychromosome 1 CDS2917273 909 - 0.489549
VP2762 conserved hypothetical proteinchromosome 1 CDS2929909 540 + 0.444444
VP2766 met repressorchromosome 1 CDS2935509 321 + 0.429907
VP2807 ribonuclease Rchromosome 1 CDS2970248 2508 - 0.489234
VP2808 conserved hypothetical proteinchromosome 1 CDS2972871 426 - 0.474178
VP2836 transcriptional reguator, TetR familychromosome 1 CDS3005492 636 - 0.457547
VP2858 transcriptional regulator CpxRchromosome 1 CDS3024961 690 + 0.498551
VP2866 transcriptional regulator, LuxR familychromosome 1 CDS3034505 630 + 0.487302
VP2885 factor-for-inversion stimulation proteinchromosome 1 CDS3056404 297 + 0.410774
VP2893 putative transcriptional activator CadCchromosome 1 CDS3078216 1569 - 0.463352
VP2894 transcriptional regulator, MerR familychromosome 1 CDS3079950 399 - 0.418546
VP2901 hypothetical proteinchromosome 1 CDS3086455 1218 - 0.415435
VP2907 hypothetical proteinchromosome 1 CDS3094038 429 - 0.39627
VP2920 regulator of sigma Dchromosome 1 CDS3107995 492 + 0.430894
VP2921 DNA-directed RNA polymerase, beta' subunitchromosome 1 CDS3108615 4203 - 0.475613
VP2922 DNA-directed RNA polymerase, beta subunitchromosome 1 CDS3112893 4029 - 0.468851
VP2927 transcription antitermination protein NusGchromosome 1 CDS3119683 549 - 0.469945
VP2933 hypothetical proteinchromosome 1 CDS3125788 459 + 0.422658
VP2941 transcriptional regulator, TetR familychromosome 1 CDS3144878 642 - 0.464174
VP2945 LexA repressorchromosome 1 CDS3149697 621 - 0.492754
VP2953 RNA polymerase sigma-32 factorchromosome 1 CDS3156840 861 - 0.473868
VP2971 transcriptional regulator, ArsR familychromosome 1 CDS3170200 336 - 0.458333
VP3000 transcription termination factor Rhochromosome 1 CDS3202928 1260 - 0.468254
VP3002 ATP-dependent RNA helicase RhlBchromosome 1 CDS3204822 1314 + 0.493912
VP3009 transcriptional regulator, AraC/XylS familychromosome 1 CDS3212111 807 + 0.447336
VP3020 transcriptional regulator, LysR familychromosome 1 CDS3222934 942 + 0.474522
VP3063 transcriptional regulator, LysR familychromosome 1 CDS3271548 903 - 0.491694
VP3077 ParB family proteinchromosome 1 CDS3284235 882 - 0.479592