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2024-05-06 05:27:09

Gene list

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COG category: Transcription
Organism: Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, Hildenborough

Number of genes found: 136

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Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, Hildenborough
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA DVU2378 transcriptional regulator, AraC familychromosome CDS2475614 693 + 0.663781
NA DVU3313 transcriptional regulator, LysR familychromosome CDS3489178 891 - 0.680135
NA DVU2319 transcriptional regulator domain proteinchromosome CDS2414335 657 + 0.666667
NA DVU1138 hypothetical proteinchromosome CDS1234307 633 - 0.657188
NA DVU0479 serine/threonine protein kinase, putativechromosome CDS544595 1500 + 0.665333
NA DVU0024 conserved hypothetical proteinchromosome CDS27468 171 + 0.596491
NA DVU0749 DNA-binding response regulatorchromosome CDS839102 930 - 0.646237
NA DVU2251 DNA-binding proteinchromosome CDS2346940 561 - 0.606061
NA DVU2909 transcriptional regulator, MarR familychromosome CDS3010822 414 + 0.637681
NA DVU1967 transcriptional regulator, rrf2 protein, putativechromosome CDS2042526 522 + 0.622605
NA DVU2886 transcriptional regulator, AraC familychromosome CDS2984227 840 + 0.669048
NA DVU2246 S1 RNA binding domain proteinchromosome CDS2341713 2172 + 0.67035
NA DVU1572 transcriptional regulator, CarD familychromosome CDS1655325 516 - 0.565891
NA DVU2577 DNA-binding response regulator, LuxR familychromosome CDS2690356 651 + 0.589862
NA DVU2086 transcriptional regulator, GntR familychromosome CDS2176130 1443 - 0.625087
NA DVU1674 transcriptional regulator, putativechromosome CDS1754716 615 + 0.595122
NA DVU0321 transcriptional activator, putative, Baf familychromosome CDS364219 789 + 0.65019
NA DVU1645 transcriptional regulator, ArsR familychromosome CDS1724829 345 - 0.455072
NA DVU2028 conserved domain proteinchromosome CDS2111168 228 - 0.535088
NA DVU2423 transcriptional regulator, putativechromosome CDS2528735 480 + 0.641667
NA DVU2676 hypothetical proteinchromosome CDS2787609 267 + 0.569288
NA DVU2785 transcriptional regulator, GntR familychromosome CDS2890512 714 - 0.638655
NA DVU2633 transcriptional regulator, putativechromosome CDS2748792 774 + 0.624031
NA DVU2567 conserved hypothetical proteinchromosome CDS2680076 705 - 0.632624
NA DVU3207 RNB-like family proteinchromosome CDS3372044 2097 + 0.665713
NA DVU1858 cold shock domain proteinchromosome CDS1925817 537 - 0.588454
NA DVU0854 NirD protein, putativechromosome CDS944038 531 - 0.612053
NA DVU0509 conserved hypothetical proteinchromosome CDS583287 231 - 0.666667
NA DVU0030 transcriptional regulator, GntR familychromosome CDS36482 1503 - 0.680639
NA DVUA0003 hypothetical proteinpDV CDS1740 3396 + 0.676384
NA DVU3142 sigma-54 dependent transcriptional regulatorchromosome CDS3290118 1704 - 0.661972
NA DVU1964 transcriptional regulator, rrf2 protein, putativechromosome CDS2041408 513 - 0.590643
NA DVU2836 hypothetical proteinchromosome CDS2940609 447 + 0.543624
NA DVU0722 response regulatorchromosome CDS803442 1557 + 0.624277
NA DVU0606 transcriptional regulator, ArsR family/methyltransferase, UbiE/COQ5 familychromosome CDS674210 924 + 0.623377
NA DVU2644 transcriptional regulator, GntR familychromosome CDS2760784 672 - 0.575893
NA DVU0569 sigma-54 dependent transcriptional regulatorchromosome CDS634415 1581 + 0.632511
NA DVU3088 ATP-dependent RNA helicase, DEAD/DEAH box familychromosome CDS3229894 1734 + 0.6609
NA DVU2956 sigma-54 dependent transcriptional regulatorchromosome CDS3064162 1038 - 0.623314
NA DVU0269 transcriptional regulator, rrf2 protein, putativechromosome CDS310226 498 + 0.620482
NA DVU1519 transcriptional regulator, putativechromosome CDS1588433 675 + 0.517037
NA DVU2364 aminotransferase, classes I and IIchromosome CDS2461234 1167 - 0.644387
NA DVU1690 transcriptional regulator, TetR familychromosome CDS1768176 570 + 0.550877
NA DVU0330 response regulatorchromosome CDS372996 1239 - 0.653753
NA DVU1331 transcriptional regulator, LysR familychromosome CDS1407515 927 + 0.578209
NA DVU2036 helix-turn-helix protein, CopG familychromosome CDS2116661 240 - 0.55
NA DVU2106 sigma-54 dependent transcriptional regulatorchromosome CDS2200357 1377 + 0.658678
NA DVU2827 sigma-54 dependent transcriptional regulatorchromosome CDS2934393 1422 + 0.600563
NA DVU3310 ATP-dependent RNA helicase, DEAD/DEAH familychromosome CDS3486594 1599 + 0.676048
NA DVU1181 response regulatorchromosome CDS1271372 1071 - 0.61718
NA DVU2582 transcriptional regulator, TetR familychromosome CDS2703645 588 + 0.573129
NA DVU2440 hypothetical proteinchromosome CDS2546391 924 - 0.658009
NA DVU2788 transcriptional regulator, ArsR familychromosome CDS2891957 363 - 0.61708
NA DVU2690 hypothetical proteinchromosome CDS2804317 588 + 0.651361
NA DVU2819 transcriptional regulator, TetR familychromosome CDS2924948 609 + 0.632184
NA DVU1144 transcriptional regulator, Cro/CI familychromosome CDS1239484 768 + 0.542969
NA DVU1142 transcriptional regulator, putativechromosome CDS1238531 270 - 0.614815
NA DVU2953 transcriptional regulator, GntR familychromosome CDS3060107 1563 + 0.652591
NA DVU3131 transcriptional regulator, putativechromosome CDS3277423 948 + 0.607595
NA DVU0529 transcriptional regulator, rrf2 protein, putativechromosome CDS601638 453 - 0.607064
NA DVU1744 DNA-binding proteinchromosome CDS1811183 243 - 0.54321
NA DVU1402 transcriptional regulator, LysR familychromosome CDS1471525 996 + 0.658635
NA DVU2799 transcriptional regulator, MarR familychromosome CDS2900849 417 - 0.611511
NA DVUA0084 transcriptional regulator, AbrB familypDV CDS111110 192 + 0.583333
NA DVU1557 hypothetical proteinchromosome CDS1634075 216 - 0.578704
NA DVU0063 transcriptional regulator, MarR familychromosome CDS75421 441 + 0.630385
NA DVUA0025 response regulator receiver domain proteinpDV CDS30780 462 - 0.664502
NA DVU2675 DNA-binding response regulator, LuxR familychromosome CDS2786675 684 - 0.653509
NA DVU0057 transcriptional regulator, TetR familychromosome CDS63889 642 + 0.633956
NA DVU1970 response regulatorchromosome CDS2045022 408 + 0.627451
NA DVU3186 hypothetical proteinchromosome CDS3346150 822 - 0.666667
NA DVU2464 hypothetical proteinchromosome CDS2570171 1584 + 0.625
NA DVU3167 heme biosynthesis protein, putativechromosome CDS3323356 483 + 0.627329
NA DVU2686 peptidase, S24 familychromosome CDS2799591 783 - 0.53129
NA DVU1338 conserved hypothetical proteinchromosome CDS1415889 585 - 0.642735
NA DVU3066 DNA-binding proteinchromosome CDS3202265 570 - 0.626316
NA DVU0257 acetyltransferase, GNAT familychromosome CDS300822 465 + 0.587097
NA DVU2194 hypothetical proteinchromosome CDS2291229 690 + 0.665217
NA DVU1745 DNA-binding proteinchromosome CDS1811492 540 + 0.551852
NA DVUA0086 response regulatorpDV CDS114998 1092 - 0.661172
NA DVU3123 HD domain proteinchromosome CDS3271204 696 - 0.622126
NA DVU0145 response regulatorchromosome CDS180029 408 - 0.654412
NA DVU2532 transcriptional regulator, MerR familychromosome CDS2643711 384 - 0.643229
NA DVU0629 transcriptional regulator, TetR familychromosome CDS696323 561 + 0.55615
NA DVU2085 Snf2 family proteinchromosome CDS2172708 3168 + 0.614899
NA DVU2149 conserved hypothetical proteinchromosome CDS2247518 1740 - 0.665517
NA DVU0277 transcriptional regulator, AraC familychromosome CDS320357 981 + 0.61366
NA DVU2588 DNA-binding response regulatorchromosome CDS2712233 681 - 0.63583
NA DVU2802 transcriptional regulator, GntR familychromosome CDS2904939 696 + 0.66954
NA DVU3215 response regulatorchromosome CDS3382952 366 - 0.644809
NA DVUA0099 HAMP domain proteinpDV CDS133570 2184 - 0.688187
NA DVU1518 transcriptional regulator cI, truncationchromosome CDS1588107 291 - 0.5189
NA DVU1584 sigma 70 family proteinchromosome CDS1666207 1071 - 0.585434
NA DVU1754 hypothetical proteinchromosome CDS1820331 408 + 0.627451
NA DVU2359 sigma-54 dependent transcriptional regulatorchromosome CDS2456656 1656 + 0.655193
NA DVUA0137 response regulatorpDV CDS178783 648 - 0.637346
NA DVU3360 ParB family proteinchromosome CDS3530486 915 + 0.619672
NA DVU0525 transcriptional regulator, MarR familychromosome CDS598268 669 + 0.61136
NA DVU0394 radical SAM domain proteinchromosome CDS442741 1023 - 0.666667
NA DVU0309 transcriptional regulator, LysR familychromosome CDS353856 921 + 0.698154
NA DVU2968 sensor histidine kinase/response regulatorchromosome CDS3073821 1197 - 0.645781
NA DVU2275 sigma-54 dependent transcriptional regulatorchromosome CDS2363991 1455 + 0.64055
NA DVU1760 transcriptional regulator, TetR familychromosome CDS1824953 585 - 0.540171
NA DVU0436 transcriptional regulator, TetR familychromosome CDS489845 756 + 0.592593
NA DVU2111 transcriptional regulator, LysR familychromosome CDS2206454 903 + 0.654485
NA DVU0682 DNA-binding protein, putativechromosome CDS756252 789 - 0.608365
flgM DVU0523 negative regulator of flagellin synthesis FlgMchromosome CDS597294 315 - 0.603175
fliA DVU3229 RNA polymerase sigma factor for flagellar operon FliAchromosome CDS3396820 798 - 0.614035
greA DVU3245 transcription elongation factor GreAchromosome CDS3414783 492 + 0.599594
hrcA DVU0813 heat-inducible transcription repressor HrcAchromosome CDS900335 1068 - 0.656367
hypB DVU2329 hydrogenase accessory protein HypBchromosome CDS2425178 675 + 0.64
iciA DVU0594 chromosome initiation inhibitorchromosome CDS662909 903 + 0.662237
lytR DVU0596 DNA-binding response regulator LytRchromosome CDS664472 774 + 0.647287
mfd DVU1903 transcription-repair coupling factorchromosome CDS1977379 3483 - 0.638817
nifA-1 DVU1949 nif-specific regulatory proteinchromosome CDS2021083 1590 - 0.607547
nifA-2 DVUA0143 Nif-specific regulatory proteinpDV CDS184786 1548 - 0.681525
nikR DVU2891 nickel responsive regulatorchromosome CDS2988755 420 + 0.6
nusA DVU0510 N utilization substance protein Achromosome CDS583521 1287 - 0.62704
nusB DVU1197 N utilization substance protein Bchromosome CDS1289617 462 - 0.636364
nusG DVU2923 transcription antitermination protein NusGchromosome CDS3021239 552 + 0.572464
phoB DVU1083 phosphate regulon transcriptional regulator PhoBchromosome CDS1187127 690 + 0.618841
pspA DVU2988 phage shock protein Achromosome CDS3094671 666 - 0.65015
pspC DVU2986 phage shock protein Cchromosome CDS3093874 423 - 0.621749
pspF DVU2989 psp operon transcriptional activatorchromosome CDS3095502 1146 + 0.682373
relA DVU2083 GTP pyrophosphokinasechromosome CDS2168573 2154 - 0.630919
rhlE DVU1982 ATP-dependent RNA helicase RhlEchromosome CDS2058879 1389 - 0.680346
rho DVU1571 transcription termination factor Rhochromosome CDS1653748 1251 - 0.58753
rnc DVU1440 ribonuclease IIIchromosome CDS1516953 762 + 0.594488
rnr DVU2467 ribonuclease Rchromosome CDS2573308 2661 - 0.65652
rpoA DVU1329 DNA-directed RNA polymerase, alpha subunitchromosome CDS1405939 1044 + 0.568008
rpoB DVU2928 DNA-directed RNA polymerase, beta subunitchromosome CDS3024679 4119 + 0.621996
rpoC DVU2929 DNA-directed RNA polymerase, beta prime subunitchromosome CDS3028905 4158 + 0.622415
rpoD DVU1788 RNA polymerase sigma-70 factorchromosome CDS1851002 1773 - 0.577552
rpoN DVU1628 RNA polymerase sigma-54 factorchromosome CDS1712453 1431 + 0.544375
rpoZ DVU3242 DNA-directed RNA polymerase, omega subunitchromosome CDS3413030 234 + 0.602564
umuD DVU2907 umuD proteinchromosome CDS3009177 495 - 0.656566