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# Chlamydophila pneumoniae CWL029, CWL029

>gid:14951  CPn0095  S/T Protein Kinase
MGEVYLAYDPVCSRKVALKKIREDLAENPLLKRRFLREARIAADLIHPGV
VPVYTIYSEKDPVYYTMPYIEGYTLKTLLKSVWQKESLSKELAEKTSVGA
FLSIFHKICCTIEYVHSRGILHRDLKPDNILLGLFSEAVILDWGAAVACG
EEEDLLDIDVSKEEVLSSRMTIPGRIVGTPDYMAPERLLGHPASKSTDIY
ALGVVLYQMLTLSFPYRRKKGKKIVLDGQRIPSPQEVAPYREIPPFLSAV
VMRMLAVDPQERYSSVTELKEDIESHLKGSPKWTLTTALPPKKSSSWKLN
EPILLSKYFPMLEVSPASWYSLAISNIESFSEMRLEYTLSKKGLNEGFGI
LLPTSENALGGDFYQGYGFWLHIKERTLSVSLVKNSLEIQRCSQDLESDK
ETFLIALEQHNHSLSLFVDGTTWLIHMNYLPSRSGRVAIIVRDMEDILED
IGIFESSGSLRVSCLAVPDAFLAEKLYDRALVLYRRIAESFPGRKEGYEA
RFRAGITVLEKASTDNNEQEFALAIEEFSKLHDGVAAPLEYLGKALVYQR
LQEYNEEIKSLLLALKRYSQHPEIFRLKDHVVYRLHESFYKRDRLALVFM
ILVLEIAPQAITPGQEEKILVWLKDKSRATLFCLLDPTVLELRSSKMELF
LSYWSGFIPHLNSLFHRAWDQSDVRALIEIFYVACDLHKWQFLSSCIDIF
KESLEDQKATEEIVEFSFEDLGAFLFAIQSIFNKEDAEKIFVSNDQLSPI
LLVYIFDLFANRALLESQGEAIFQALDLIRSKVPENFYHDYLRNHEIRAH
LWCRNEKALSTIFENYTEKQLKDEQHELFVLYGCYLALIQGAEAAKQHFD
VCREDRIFPASLLARNYNRLGLPKDALSYQERRLLLRQKFLYFHCLGNHD
ERDLCQTMYHLLTEEFQL
>gid:14961  CPn0105  CT016 hypothetical protein
MLLIYCKKKEIHLQWPQTAKIRFTPKIAMKVKINDQLICIPPFISARWSQ
IAFIESQEGENKDQGTLRLHLIDGKIISIPNLDQSIIDIAFQEHLLYLET
SQSGKEDSRDDDKLGVGVLMNVLQQITKGNDIQVLPKNLISPLFSGTNPI
EAILQHTPEHKDHPDAPTDVLEKMADVIRVLSGNNATLLPRPEPHCNCMH
CQIGRVMNEEDTLAVSDKDLTFRTWDIMQSGDKLYIVTNPLNPSDQFSVY
LGPPIGCTCGEPNCEHIKAVLYT
>gid:15342  CPn0481  hypothetical protein
MATSVPVTSSTSVGEANSSNERFTERTSRMYYAALVLGALSCLIFIAMIV
IFPQVGLWAVVLGFALGCLLLSLAIVFAVSGLVLGKTLEPSREATPPEIV
AQKEWTTQQDVLGNEYWRSELISLFLRGDLHESLIVDSKDRSLDIDQSLQ
NILKLEPLSTTLSLLKKDCVHINIILHLVRQWNLLGVDLSPEVTAHAEEL
LLFLIEEQYYSPDILKLIRYGDALQATSPLMDWADSGSFSVDADGVFSCR
REECSPEDALAQFDLLLALENPDRRFLKDSFLTYIWSSSFFEKFLHRHLE
SLQRKLPETAIDVARYEAQIQTFLSRYFQKLDLINAMSLDWGYNCAEGEK
CYESANQRLDNLFIAFSSSVPAMKRLFDKYGSVVRVDRRQIREQILSNTE
ILENESGFLCSLYEYPLSYLIDWAVLLDCVRGTEISLEDQADYTVCLQGL
DSMLSQFASRLQSGQKVLNPRDVLSEQAAVMLVHGLAAQGVSFQGLKALM
YLTAVPQRMWLGALPLFESFPVFNRMKEFLGESLGD
>gid:15395  CPn0533  CT406 hypothetical protein
MQCPFCNHGELKVIDSRNAPEANAIKRRRECLKCSQRFTTFETVELTLQV
LKRDGRYENFQESKLIHGLNAASSHTRIGQDQVHAIASNVKSELLGKQNR
EISTKEIGELVMKYLKKADMIAYIRFACVYRRFKDVGELMEVLLSATPDM
EK
>gid:15577  CPn0703  S/T Protein Kinase
MDCRGGIPLPEPQVIGGYHVKKILSKKLRSRVVHGLHPETRHSTVIKVFS
PSPSFTSRSVYNFLKEAQSLHQITHPNIVKFHRYGKWQDCLYIAMEYIEG
ISLREYILAQFISLPQAIDIIFDIAQALEHLHSRNILHKDIKPENILITP
QGKIKLIDFGLADWDTEIQRAHPSVIGTPYYMSPEQRQGESHSPASDIYA
LGLLAYELILGHLSLGRVFLSLVPERISKILAKALQPSPNNRYSSTREFI
QDIHHYRMSGDMQEDLRIKDHTVALYEQLQTQRFWLAPETLRFPDFISGV
LYHQGYPLYPHAYDTLLEGDVFNLWLGYSPISNATIALSVVKSLVCQQDL
QRPLLDRVCEINECLIRMKIPIDEMGISILCLEISKENKELSWIACGKTV
FWIKRQGRVVQDFESFSPGLGKITSLQIRETKVAWEIGDEAVVCTLELEE
SVASLKTLSLAELQDRRQKAIFCPIESIHGGIQSRQHGSNSPSTLISLKR
IR
>gid:15714  CPn0835  SWI/SNF family helicase_1
MVLEALAIFRQDAMQHLLKHRKEIVVDFCEDSYTIRIPDEEAPEGYWLST
LKLQDIDRLTFASCSCPDGECCLHLMTAYFAVYDALGLHPLHDKFRHSFW
YAVFSHFFLDSIPLQAQGEMVYTLESPHITLTIECLSEEVFQDWLRTIHA
SEEPTVFTNKTFLKSALYRTAKKFFFLNEEGAELTIGENSQGFPSHFSLQ
WQGLVFKAEILDFPTLEDIFPKLELAHTSLENVSHDISITNVTVCAEEAK
VNFTLSPVIHKKDRENHPKTRIGSVEYVAKTHEMITGPKAIALPIYAIPL
LADKFKDQLLSLLCYDSLEYRLRYDIRLLRDASFSFSAYLVTPGDLDNGS
LIYPNYCYSPTKGLMQVVGMLSPKQAFIVKSEQVEDFLNERGHLIQEPGF
QTFINERPEGHLTYNVTEQGVLLFHYDVGDPSSTEIRFGTWTYYTNQGFF
LEKKNDLPIQDGLIVEPQDIPAFIVKNDAALRRLPNFFSSPPNLKDLLIE
VHRQSRGKGLDLKPILVGLGESRCWLFGVFLYREDIGFSLIPTPLQGLCF
LPRVIPPENVPQFLTQYAQHERILFPNPQTRPPESYELVIQSIHRPHPAS
PLHLQLELKTNLGSVPIGIALQGLKSKHTFLFTQAGFLDLKQNLFQFLKQ
FLSTQKCVIAENTVIANITDVFKLDALAPLSVTDDTIANPEDLQFFSQLK
AACLPPIPQNLFSSDHQLRPYQNSGLLWMWFLYNHRLSGLLCDEMGLGKT
HQATALLDIVFQSSQPSARPKFLIVCPTSVLPHWEHILSNHLPGVSIFSF
HGPNKPSELPPADILLTSYGTLRQNYDKFYKIAFTIVVFDEIHMAKNKSS
QIHKILCRIDAQMKLGLTGTPIENNLLEFKGLLDIILPNYLPSDALFKKL
FTKRCSSEELEEIIPSQDLLLKLTRPFILRRTKKLVLPELPDKVESIIAC
SLSPDQEKLYMATLQREKSHIQKLETPEEPATNFLHIFALLNHLKQICDH
PAVFFKDPDQYKNYESGKWNAFVKLLKESLNAGYKVVVFSQYIHMIRIIT
LYLEEIGIKYASIQGKSLNRKEEIETFTTDPNCQVFVGSLLAAGTGINLT
AGNVVIMYDRWWNPAKENQALDRVHRIGQKNTVFIYKLITEDTLEERIHY
LIEKKIRLLDKVIASQDSNILHMLNREDLLTILSYKDEHGTSDSEESPVD
APVEDDTGVLPPEDS
>gid:15729  CPn0849  SWI/SNF family helicase_2
MLNFRKLRRDFSANILQDGKKLFEQGAVIDAKILSMNGETVCISAQVRGL
YDNIYECEIEVDRSESDTVDSNCDCSYNYDCQHIVALLFYLEQYFNEMVV
AYARSADLETDHEINEEVKKELKETFVAAATKEEERKDREHQKEILREYV
HAANALSANPFFLPLEYLEKDSAELAVLFVSVNEDTFAPANQPIEFQLVL
RLPCRSKPFYISNIRTFLEGVLYQEPIVLNGRRFFFTMQSFNASDRKLID
LLIRYVRYPNHTTEEKLLKSAYLMPPALGVILAKMFEHQLADRGGGSLGE
KESFSGLFCGNLEEPLCWSLTPAKMKFNLDFFDMPYKALLMTPVILVDDD
EVQPEQTMLLESDAPGIIHHFVYHRFSPQIKRAHLRSFSRLRDIAIPEAL
FGSFRENALPVFQEYAEIANVHLLNSFVTLPYVDEVRAICDMSYLDGELE
AKLHFLYGSLRVPAASLALQYQDVRAFISDEGILARNLVEERKMLEEVFS
GFIYDERDGAFRVKSEKKIVEFMTETIPANQHRITFNCPENLSGQFIYDE
TIFELSFREGSDINYYEADLKVHGLLKGVPLDLLWDCISAKKRFLELPKA
GQQSKGTRRGKVNSGKLPCILVLDLEKIAPVVQIFNEIGFKVLDDLVQKC
PLWSLTGISLDQFEALPVNFSMSERLIEIQKQIRGEIEFDFQDVPQQIQA
TLRSYQTEGVHWLERLRKMHLNGILADDMGLGKTLQAIIAVTQSKLEKGS
GCSLIVCPTSLVYNWKEEFRKFNPEFRTLVIDGVPSQRRKQLTALADRDV
AITSYNLLQKDVELYKSFRFDYVVLDEAHHIKNRTTRNAKSVKMIQSDHR
LILTGTPIENSLEELWSLFDFLMPGLLSSYDRFVGKYIRTGNYMGNKADN
MVALKKKVSPFILRRMKEDVLKDLPPVSEILYHCHLTESQKELYQSYAAS
AKQELSRLVKQEGFERIHIHVLATLTRLKQICCHPAIFAKDAPEPGDSAK
YDMLMDLLSSLVDSGHKTVVFSQYTKMLGIIKKDLESRGIPFVYLDGSTK
NRLDLVNQFNEDPSLLVFLISLKAGGTGLNLVGADTVIHYDMWWNPAVEN
QATDRVHRIGQSRSVSSYKLVTLNTIEEKILTLQNRKKSLVKKVINSDDE
VVSKLTWEEVLELLQI
>gid:15876  CPn0989  CT832 hypothetical protein
MATLSPEKFSGSPISISKEFPQQKMREIILQMLYALDMAPSAEDSLVPLL
MSQTAVSQKHVLVALNQTKSILEKSQELDLIIGNALKNKSFDSLDLVEKN
VLRLTLFEHFYSPPINKAILIAEAIRLVKKFSYSEACPFIQAILNDIFTD
SSLNENSLSI
>gid:15053  argR  Arginine Repressor
MKKKVTIDEALKEILRLEGAATQEELCAKLLAQGFATTQSSVSRWLRKIQ
AVKVAGERGARYSLPSSTEKTTTRHLVLSIRHNASLIVIRTVPGSASWIA
ALLDQGLKDEILGTLAGDDTIFVTPIDEGRLPLLMVSIANLLQVFLD
>gid:15362  hrcA  HTH Transcriptional Repressor
MLSVTIVLVGLEMARSKVSKRDSKILDILFATTELYLKTGQPVGSKTLKE
SFCSDLSTATIRNYFAELEAEGFLKKNHTSGGRIPTDLALRHYVDHQEEC
PEAEISAPIFDKISQLPSESRNIIKDLQKATELLGEILDLPTFFSSPRFE
NDSVTNIQITQVDKQRAVTILSTEFGQIFTDTLWLPEACDTLSIKRIEKF
LQNYIRKLPTNEELSKKEEHLSMSLYNEVVVRYLTRYCNFSEEDLYQTGM
SKLLKYEAFKDPEVLALGLSLFENRRQMCELLNIGMHKGRATAFIGKELS
DILGTSNPGCSVITIPYYMNRSPLGALGILGPINLPYKEALPLLKLFANK
INETLTQSFYKFKLSFRRPLTSNCKLSNEPILRTEYSSIKLLPSKETL
>gid:15775  mfd  Transcription-Repair Coupling
MAMDFNPVNLDFSISKEFKEETLPLLLENIHPGATAFLAAKMFHDCRASV
IMITTPARLDDLFENLRTFLDQAPVEFPSSEIDLSPKLVNIDAVGKRDHL
LYSLNQHRAPIFCVTTLKALLEKTRSPQATSQQHLDLAVGDVLDPEATTE
LCKSLGYSQVMLTSEKGEFSCRGGIVDIFPLSSPEPFRIEFWGEKIISIR
SYNPSDQLSTGKVSKISISPAYTEEASGGNYSHSLLDYFSTPPLYLFDNL
EILEDDFADISGTLSSLPDRFFSIGTLYDRISTSNQVYFSETPFPNVKNL
KENRVIIEAFHRNMEASRQAIPILYPEQIIQNDENPLLAFLQHLQEYMPP
HGKPLKLAIYSTKTKSLKEARALAETVARGDVEIYEKTGNLTSSFALVNE
AFAAISLSEFASTKVLRRQKQRTHFSVTTEEVFVPIPGETVVHIHNGIGK
FLGIEKKPNHLNIETDYLVLEYADKARLYVPSNQAYLISRYVGTSDKAAD
LHHLNSSKWKRSRDLTEKSLIVYAEKLLQLEAQRSTTPAFVYPPHGESVI
KFAETFPYEETPDQLKTIDQIYNDMMSPKLMDRLICGDAGFGKTEVIMRA
AVKAVCDGHRQVIVMVPTTILATQHYETFKERMAGLPIEIAVLSRFSQAK
VQKLICEQVASGQIDIIIGTHKLINKSLEFKNPGLLIIDEEQRFGVKVKD
NLKERYPMIDCLTVSATPIPRTLHMSLSGARDLSVIAMPPLDRLPVSTFV
MEHNTETLTAALRHELLRGGQAYVIHNRIESIYTLAETIRNLIPEARIGV
AHGQMGAEDLSNIFTKFKNQKTDILVATALIENGIDIPNANTILIDHADK
FGMADLYQMKGRVGRWNKKAYCYFLVPHLDRLSGPAAKRLAALNKQEYGG
GMKIALHDLEIRGAGNILGTDQSGHIGTIGFNLYCKLLKKAVSALKKHTS
PLLFNDDVKIEFPYNSRIPDTYIETGSMRIEFYQKIGNAESSEELTAIQE
EMRDRFGPLPQEICWLFALAEIRLFALQHGISSIKGTANALYVQKCLSKS
EQTKKTLPYALSPTPELLVKEVIESIERGFLINAS
>gid:15180  nusA  N Utilization Protein A
MNKNLVAIFDYMEKEKGIQRSTIIGAIESALKIAAKKTLRDDANISVNIN
SRTGDIEVFCEKEIVEICQNPSKEIPLDKAREYDPDCQIGQYMDVPFVSD
NFGRIAAHAARQIIGQKLRHAERDVIYEEYRHRVNETLSGVVKRFAKGSN
LIIDLGKVEAILPTRFYPKTEKHKIGDKIYALLYEVQESENGGAEVILSR
SHAEFVKQLFIQEVPELEEGSVEIVKIAREAGYRTKLAVRSSDPKTDPVG
AFVGMRGSRVKNIIRELNDEKIDIVNYSPVSTELLQNLLYPIEIQKIAIL
EDDKVIAIVVNDADYATVIGKRGINARLISHILDYELEVQRMSEYNKLLE
IQRLQLAEFDSPHLDQPLEMEGISKLVIQNLEHAGYDTIRRVLLASANDL
ASVPGISLELAYKILEQVSKYGESKVDEKPEIED
>gid:14932  nusG  Transcriptional Antitermination
MYKWYVVQVFTAQEKKVKKALEDFKESSGMTDFIQEIILPIENVMEVKKG
EHKVVEKYIWPGYLLVKMHLTDESWLYVKSTAGIVEFLGGGVPVALSEDE
VRSILTDIEEKKSGVVQKHQFEVGSRVKINDGVFVNFIGMVSEVFHDKGR
LSVMVSIFGRETRVDDLEFWQVEEVAPGQESE
>gid:15554  parB  Chromosome Partitioning Protein
MTEEISKDTIIEVAIDDIRVSPFQPRRVFSNEELQELIASIKAVGLIHPP
VVREICTGDRVLYYELIAGERRWRAMQLAGATTIPVILKHVIADGTAAEA
TLIENIQRVNLNPIEMAEAFKRLIHVFGLTQDKVAYKVGKKRSTVANYLR
LLALSKTIQESLLQGQITLGHAKVILTLEDPILREKLNEIIIQEHLAVRE
AELIAKQLISEEGSSIELKPTPLDMAESSKQHEELQQRLSDLCGYKVQIK
TRGSKATVSFHLQNTQDLQKLEAWLSSHGTLSESLS
>gid:15672  rbsU  sigma regulatory family protein-PP2C phosphatase (RsbW antagonist)
MIPFTKTIGFRLWLACAVAIIAPLGINIVWLNLDQYRTIVSAISTALKEN
AAFKANTLTQIVPLNVDVLSLFSDVLDLDAGIPETPNVLLSNEMQKVFQG
IYNEISLIKVFPNGDKIVVASSIPEHLGENYNHKIDIPKNTPFLAALKQS
PKNQEVFSVMQANVFDAKTQELQGILYTTFSAESLLKDLLINKQSYLTVK
TAILSKYGVILKASDPALHLHTVYPDMTKEKFCQVFLNDDPCPIDSELGP
LTLSPLDIGENFYSFKIKDTEIWGCIENVPSIDIAVLSYAKKEESFAPLW
RRARMYTAYFFCILLGSLIAFIVARRLSLPIRKLATAMIESRKNKNCLYT
DDSLGFEINRLGHIFNAMVENLHKQQHLAKTNFEMKENAQNALHLGEQAQ
QRLLPNTLPSYPHIELAKAYIPAITVGGDFFDVFVVGEGSKARLFLIVAD
ASGKGVNACGYSLFLKNMLRTFLSRSSSLQQAIQETSRLFYNNTKNSGMF
VTLCVYCYHQTSNTMEYYSCGHPPACYLDPDGETSWLFHPGMALGFLPEV
ANITSKLFHPKPGSLFVLYSDGITEAHNNNNDMFGEERLQAAIQGLTGKS
AADAVHRLMLSVKTFVGNSHQHDDITLLILKVLES
>gid:15477  rho  Transcription Termination Factor
MKEERSSEILPRVKETKKHAYVSMQEKSCVGECAVVASESEEAESVTVTK
IAKLQRMGIEELNILARQYGVKNIGSLTKSQVVFEIVKAKSERPDELLIG
EGVLEVLPDGFGFLRSPTYNYLPSAEDIYVSPAQIRRFDLKKGDTIIGTI
RSPKEKEKYFALLKVDKINGSTPDKAKERVLFENLTPLYPNQRIVMEMGK
DHLAERVLDLTAPIGKGQRGLIVAPPRSGKTVILQSIAHAIAVNNPDIVL
IVLLIDERPEEVTDMIRQVRGEVVASTFDEQPERHIQVAEMVIEKARRLV
EHGNDVVILLDSITRLARAYNTVQPHSGKILTGGVDASALHKPKRFFGAA
RNIEGGGSLTILATALIDTGSRMDEVIFEEFKGTGNMELVLDRRLSDRRT
YPAIDLIKSGTRKEELLYHPSELERVYLFRQAIADLTTIDAMHLLLGRLK
KTNSNAEFLLSLKE
>gid:14907  rnc  Ribonuclease III
MHPPIDITAIEAKLNFTFTQPKLLEIALTHPSYKNESAVQIEDSERLEFL
GDAVLGLIVTEHLFLLFPSMDEGTLSTARASLVNAKACCRYTTMLGIGDY
LLIGKGEKIQSERGRLSAYANLFESILGAVYLDGGLSPARKLTVPLLPPR
EEILPLMSGNPKNLLQQFTQKQFRVLPVYQSTAVTDAQGNVSYQIQVLVN
QEVWGEGNASSKKEAEKIAAQQALDTYGNKNQNTMDV
>gid:15495  rpoA  RNA Polymerase Alpha
MSDNAHNLLYDKFELPEAVKMLPVEGLPIDKHARFIAEPLERGMGHTLGN
ALRRALLIGLEAPAIISFAMTGVLHEYMAIEGVIEDVTNIILNLKGALLK
KYPMQDSSLGRTTQVLKASISIDASDLAAANGQKEVTLQDLLQEGDFEAV
NPDQVIFTVTQPIQLEVVLRIAFGRGYTPSERIVLEDKGVYEIVLDAAFS
PVTLVNYFVEDTRVGQDTDFDRLVLIVETDGRVTPKEALAFSTQILTKHF
SIFENMDEKKIVFEEAISIEKENKDDILHKLILGINEIELSVRSTNCLSN
ANIETIGELVIMPEPRLLQFRNFGKKSLCEIKNKLKEMKLELGMDLTQFG
VGLDNVKEKMKWYAEKIRAKNTKG
>gid:14937  rpoB  RNA Polymerase Beta
MLKCPERVSVKKKEDIPDLPNLIEIQIKSYKQFLQIGKLAEERENIGLEE
VFREIFPIKSYNEATVLEYLSYNLGVPKYSPEECIRRGITYSVTLKVRFR
LTDETGIKEEEVYMGTIPLMTDKGTFIINGAERVVVSQVHRSPGINFEQE
KHSKGNILFSFRIIPYRGSWLEAIFDINDLIYIHIDRKKRRRKILAITFI
RALGYSSDADIIEEFFTIGESSLRSEKDFALLVGRILADNIIDEASSLVY
GKAGEKLSTAMLKRMLDAGIASVKIAVDADENHPIIKMLAKDPTDSYEAA
LKDFYRRLRPGEPATLANARSTIMRLFFDPKRYNLGRVGRYKLNRKLGFS
IDDEALSQVTLRKEDVIGALKYLIRLKMGDEKACVDDIDHLANRRVRSVG
ELIQNQCRSGLARMEKIVRERMNLFDFSSDTLTPGKVVSAKGLASVLKDF
FGRSQLSQFMDQTNPVAELTHKRRLSALGPGGLNRERAGFEVRDVHASHY
GRICPIETPEGPNIGLITSLSSFAKINEFGFIETPYRIVRDGIVTDEIEY
MTADVEEECVIAQASASLDEYNMFTEPVCWVRYAGEAFEADTSTVTHMDV
SPKQLVSIVTGLIPFLEHDDANRALMGSNMQRQAVPLLKTEAPVVGTGLE
CRAAKDSGAIVVAEEDGVVDFVDGYKVVVAAKHNPTIKRTYHLKKFLRSN
SGTCINQQPLCAVGDVITKGDVIADGPATDRGELALGKNVLVAFMPWYGY
NFEDAIIISEKLIREDAYTSIYIEEFELTARDTKLGKEEITRDIPNVSDE
VLANLGEDGIIRIGAEVKPGDILVGKITPKSETELAPEERLLRAIFGEKA
ADVKDASLTVPPGTEGVVMDVKVFSRKDRLSKSDDELVEEAVHLKDLQKG
YKNQVATLKTEYREKLGALLLNEKAPAAIIHRRTAEIVVHEGLLFDQETI
ERIEQEDLVDLLMPNCEMYEVLKGLLSDYETALQRLEINYKTEVEHIREG
DADLDHGVIRQVKVYVASKRKLQVGDKMAGRHGNKGVVSKIVPEADMPYL
SNGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIYVKTPVFEGFPE
QRIWDMMIEQGLPEDGKSFLYDGKTGERFDNKVVIGYIYMLKLSHLIADK
IHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQEILT
VKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVRPMVV
DA
>gid:14938  rpoC  RNA Polymerase Beta'
MFGENSRDIGVLSKEGLFDKLEIGIASDITIRDKWSCGEIKKPETINYRT
FKPEKGGLFCEKIFGPTKDWECCCGKYKKIKHKGIVCDRCGVEVTLSKVR
RERMAHIELAVPIVHIWFFKTTPSRIGNVLGMTASDLERVIYYEEYVVID
PGKTDLTKKQLLNDAQYREVVEKWGKDAFVAKMGGEAIYDLLKSEDLQSL
LKDLKERLRKTKSQQARMKLAKRLKIIEGFVSSSNHPEWMVLKNIPVVPP
DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKAILRLKTPEVIVRNEKR
MLQEAVDALFDNGRHGHPVMGAGNRPLKSLSEMLKGKNGRFRQNLLGKRV
DYSGRSVIIVGPELKFNQCGLPKEMALELFEPFIIKRLKDQGSVYTIRSA
KKMIQRGAPEVWDVLEEIIKGHPVLLNRAPTLHRLGIQAFEPVLIEGKAI
RIHPLVCAAFNADFDGDQMAVHVPLSVEAQLEAKVLMMAPDNIFLPSSGK
PVAIPSKDMTLGLYYLMADPTYFPEEHGGKTKIFKDEIEVLRALNNGGFI
DDVFGDRRDETGRGIHIHEKIKVRIDGQIIETTPGRVLFNRIVPKELGFQ
NYSMPSKRISELILQCYKKVGLEATVRFLDDLKDLGFIQATKAAISMGLK
DVRIPDIKSHILKDAYDKVAIVKKQYDDGIITEGERHSKTISIWTEVSEQ
LSDALYVEISKQTRSKHNPLFLMIDSGARGNKSQLKQLGALRGLMAKPNG
AIIESPITSNFREGLTVLEYSISSHGARKGLADTALKTADSGYLTRRLVD
VAQDVIITEKDCGTLNHIEISAIGQGSEELLPLKDRIYGRTVAEDVYQPG
DKSRLLAQSGDVLNSVQAEAIDDAGIETIKIRSTLTCESPRGVCAKCYGL
NLANGRLIGMGEAVGIIAAQSIGEPGTQLTMRTFHLGGIAATSSTPEIIT
NSDGILVYMDLRVVLGQEGHNLVLNKKGALHVVGDEGRTLNEYKKLLSTK
SIESLEVFPVELGVKILVADGTPVSQGQRIGEVELHNIPIICDKPGFIKY
EDLVEGISTEKVVNKNTGLVELIVKQHRGELHPQIAIYDDADLSELVGTY
AIPSGAIISVEEGQRVDPGMLLARLPRGAIKTKDITGGLPRVAELVEARK
PEDAADIAKIDGVVDFKGIQKNKRILVVCDEMTGMEEEHLIPLTKHLIVQ
RGDSVIKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDIN
DKHIEIIVRQMLQKVRITDPGDTTLLFGEDVNKKEFYEENRRTEEDGGKP
AQAVPVLLGITKASLGTESFISAASFQDTTRVLTDAACCSKTDYLLGFKE
NVIMGHMIPGGTGFETHKRIKQYLEKEQEDLVFDFVSETECVC
>gid:15634  rpoD  RNA Polymerase Sigma-66
MFMNTQNSQATEVSSEEESQKKLEELVALAKEQGFITYEEINEILPMSFD
TPEQIDQVLIFLTGMDIQVLNQIDVERQKEKKKEAKELEGLARRTEGTPD
DPVRMYLKEMGTVPLLTREEEVEISKRIEKAQVQIERIILRFRYSAKEAI
SIAHYLISGKERFDKIISEKEVEDKTHFLKLLPKLITLLKEEDTYLENLL
LSLKQPDLSKQEAAKLNDSLEKCRIRTQAYLRCFHCRHNVTEDFGEVVFK
AYDSFLHLEQQINDLKVRAERNKFAAAKLAAAKRKLYKREVAAGRTLEEF
KKDVRMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEG
NMGLMKAVEKFEYRRGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIE
TINKVLRGAKKLMMETGKEPTPEELAEELGLTPDRVREIYKIAQHPISLQ
AEVGEGSESSFGDFLEDTAVESPAEATGYSMLKDKMKEVLKTLTDRERFV
LIHRFGLLDGKPKTLEEVGSAFNVTRERIRQIEAKALRKMRHPIRSKQLR
AFLDLLEEEKTGTSKVKSLKSK
>gid:15649  rpoN  RNA Polymerase Sigma-54
MFQQKQKLSLKYLPSLRMQQGLQMLQSPLTELSSYVVQEIIDNPFFDLSS
LEEEEWSPCYRPTNSTFSYLNQTPGPQESLYTRLLPQIEEAFSTAEERFI
AHQIAGNLSDEGLFLRNPEDFAQELELPLEKIHKVWDTIQNLSPEGIASP
SLQSYWMKLLRNSSHQQAYSIVRDCYPLMTNCEFAPIMKKFSLSLSELRN
ILKKALGSIPWCPAAACTVKPMVSTPLPDIYLFYSSGSWKIEVSTRGLPS
IKLNKETFHFYEHLPKEEQKNLSQQILSAKWLIKNLRKREQTLLQVMETL
LPKQEDFLLGKIPAPYPLGIKDLAEDLSFHESTIFRAIENKAVAAPIGIF
PLKHLFPRGIHQDSSHSKENVLQWIRQWIATEQTPLSDSVISDRITAKGI
PCARRTVAKYRAQLKILPANKRKKLFYIRSSNSHFRDRQF
>gid:15223  rpsD  Sigma-28/WhiG Family
MKTQQTQNIIEVWNFYWETQEIEYRDSLIEFYLPLVKSVVHRLISGMPSH
VKTEDLYASGVEGLVRAVERYNPERSRRFEGYAVFLIKAAIIDDLRKQDW
VPRSVHQKANKLSGAMDSLRQSLGKEPTDLELCEYLNISQQELSGWFVSA
RPALIVSLNEEWPSQSDEGAGMALEERIPDERAETGYDVVDKQEFSLCLA
NAIQELEEKERKVMALYYYEELVLKEIGKVLGVSESRVSQIHSKALLKLR
AALSAFR
>gid:15628  tctD  HTH Transcriptional Regulatory Protein + Receiver Doman
MIGDKIILFVTEDLSLSSQLKDLASQRSDYQILVSPVFPTSFESVAIFCE
YLLLPEQIFSPGIFPEEDLIVLFDTFQEEAITKVLNQGATGYLLRPITAK
VLDAVIRAFLRQHEVLEHSIPDTMTFGDHTFRVLNLVIESPEGSVYLTPS
EAGILKKLLINRGHLCLRKNLLAEIKGNTKEIIARNVDVHIASLRKKLGP
YGSKIVTIRGVGYLFSDDDSIPLQNHDNTAHPNEE
>gid:15365  vacB  ribonuclease family
MLKKPKRKPGRRTYGKSLKIFIPGTLFVHARKGFGFVSPDNPEEYPFDIF
VPARDLRGALDGDHVIVSVLPYPRDGQKLKGTISEVLARGKTTLVGTITS
LVSPTSALAYTSMSGSQSLIPVELLPGRTYKIGDRILLSTPPWVDKPQEG
ASPALQMLEFIGHITNAKADFQAIQAEYNLAEEFPPEVIEEASLFSQKHI
TQVLHSRKDLRDLLCFTIDSSTARDFDDAISLTYDHNNNYILGVHIADVS
HYVTPHSHLDKEAAKRCNSTYFPGKVIPMLPSALSDNLCSLKPNVDRLAV
SVFMTFTKSGHLSDYQIFRSVIRSKYRMTYDEVDNIIEKKHSHPLSKILN
EMATLSKKFSDIREERGCIRFVLPSVTMSLDNLQEPVALIENHQTFSHKL
IEEFMLKANEVVAYHISHQGVSLPFRSHEPPNDENLLAFQELAKNMGFDI
TFTPTQEPDYQYLLQTTSAGHPLEQVLHSQFVRSMKTASYSTENKGHYGL
KLDYYTHFTSPIRRYIDLIVHRLLFNPLSIDQTHLEIIVRACSTKERVSA
KAENSFENLKKTRFINKFLQEQPKTTYHAYIITANHEGLSFVVTEFCHEG
FIAAAELPKEYSLKKNALPESIPDKMKPGASIKVTIDSVNLLTQKIVWSI
ATTTEDKPKKIKKTPSKKKGTKKRAS
>gid:15439  yhhY  Amino Group Acetyl Transferase
MTAEKQNTGILGLEIRYTLPSDATYMLKWLNDPKILRGFPIQTEAEIRET
VNFWVGFYRYHSSLTAVYNGNVAGVATLVLNPYVKVSHHALISIIVGEEF
RNKGIGTALLNNLIHLAKTRFKLEVLYLEVYEGNPALHLYQRFGFVEVGR
QNRFYKDEIGYLAKTTMEKDL
>gid:14997  yqgE  YqgE hypothetical protein
MKIPYARLEKGSLLVASPDINQGVFARSVILLCEHSLNGSFGLILNKTLG
FEISDDIFTFEKVSNHNIRFCMGGPLQANQMMLLHSCSEIPEQTLEICPS
VYLGGDLPFLQEIASSESGPEINLCFGYSGWQAGQLEKEFLSNDWFLAPG
NKDYVFYSEPEDLWALVLKDLGGKYASLSTVPDNLLLN
>gid:15208  ytgC  Integral Membrane Protein
MLSCVFSDTIFLSSFLAVTLICMTTALWGTILLISKQPLLSESLSHASYP
GLLVGALMAQYVFSLQASIFWIVLFGCAASVFGYGIIVFLGKVCKLHKDS
ALCFVLVVFFAIGVILASYVKESSPTLYNRINAYLYGQAATLGFLEATLA
AIVFCASLFALWWWYRQIVVTTFDKDFAVTCGLKTVLYEALSLIFISLVI
VSGVRSVGIVLISAMFVAPSLGARQLSDRLSTILILSAFFGGISGALGSY
ISVAFTCRAIIGQQAVPVTLPTGPLVVICAGLLAGLCLLFSPKSGWVIRF
VRRKHFSFSKDQEHLLKVFWHISHNRLENISVRDFVCSYKYQEYFGPKPF
PRWRVQILEWRGYVKKEQDYYRLTKKGRSEALRLVRAHRLWESYLVNSLD
FSKESVHELAEEIEHVLTEELDHTLTEILNDPCYDPHRQIIPNKKKEV