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Gene list

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COG category: Transcription
Organism: Rhizobium etli, CFN42
Gene type: CDS

Number of genes found: 19

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# Rhizobium etli, CFN42

>RHE_PD00218 RNA polymerase sigma factor protein (sigma-54)
MKSFTSLHQRQQQSLVITPQLIASIRLLQLAHTELNQFVEQEIEKNPFLD
LASNDGGASGVSPTAADDPNISAREDHVDGPARTDMPELSSPWKSIRDTG
NLSPGERPSLDEFAASTETLHEHVAHQIALTAFTPQERLIAGALADHLDD
TGYLQVNLLELAERLNSPEAGVKRVLEALQLFDPPGIFARSLGECLEIQL
RQRDRFDPAMAALVANLELLARRDFRALKRRCRVDEDDLLDMLNEIRALD
PKPGNQFQSARSESIIPDVFVLPSPGGGWHVELNREILPKVLINQTYFAQ
VTRLTAQSSKDQSFLNECFQSASWLVRSLDQRATTILKVATEIVRHQDVF
LEDGIAHLRPLNLKTIADAIDMHESTVSRVTSNKYILTPRGVFELKYFFT
VAIPSSQGGDAHSAEAVRHQIRALIAAETLHDVLSDDGIVAKLKETGVDI
ARRTVAKYREAMNIPSSAQRRREKRFVLAAAEG
>RHE_PD00316 nod transcriptional regulator protein, LysR family
MRFKGLDLNLLVALDALTTERNLTAAARSINLSQPAMSAAIGRLRDYFRD
ELFTMNGRELRLTPRAEGLASAVRETLLQVQCSIISWEPFNPSKSDRCFR
IVLSDFMMLIYFNKIIERVAREAPAVSFELLPLDSDPYEMLSRGDVDFLI
VPEFFLSGAHPSAKLFTEKFVCVACSTNVDLPSALTIEQYVSTGHVAAAF
GRFLKPSVEGWFLLENGIQRRVEVVVQGFSLIPPVLRGTNRIANLPLRLV
EHYESTFPLRIINLPLPLPVFTEAVQWPALHNADPGSIWFREILVEEASR
MMSSNAPKIHGLLQQSGS
>RHE_PD00275 nod transcriptional regulator protein, LysR family
MDEDMRFKGLDLNLLVALDALMTERNLTAAARSINLSQPAMSAAVGRLRT
YFNDDLFTMVGRELVPTPRAERLAPSVREALLHIQVSIISWDPFCPAQSD
RCFRVILSDYAALVFFEKVVTRVAREAPAVSFELLPIADNYDDYLRRGDA
DFLIFPELLMSRAHPKVALFEETLVCVGCRSNKLLSEQLTLERYMSMGHV
VVKFGNAASIEEWCLLGHGLKRHVEVVVQGFSMVPFMLSGTERIATMPLR
LVKQLEKTIPLRIADLPLPLPAFTQALQWPALHNSDQASLWMRDVLCQEA
SRMPSPHEVMRRLRIS
>RHE_PD00318 nod transcriptional regulator protein, LysR family
MRFKGLDLNLLVALDALMIERNLTAAARSINLSQPAMSAAVRRLRSYFRD
ELFTMRGREFVPTPRAEDLAPAIREALQHIRLNIIPWDKFTPDQSDRHFR
VSLCDFVTVVLFQKILERLAREAPGISFDLLPLTDNPDELLRRGDVDFLI
SPPLFMSSAHPKIDLFQERLTCVGCSNNKQLEEALTAEEYSSMGHAVVRF
GRTQQPTIEDCFLQEHGLKRRVEVVVSSFSMIPAALMGTDRIATVPLRLV
GLFEDTIPLRMTAPPIALPTFTEAVQWPVLHDKDPANIWMRDIMVQEAAR
LP
>RHE_PD00235 hypothetical protein
MKRPLSPKSLRVIANLAQVDNPCVKRFRYDLCLCTCDHLYILVNDSYRVR
SAWPKMRQIRSKRNIGGSKHITFRIKSFGAFTSVGAMSGPPLKQWINELG
LQQVDDPGIDKPVYRKPFDGRIALSAELENLISISLREARDKRKLPRSKL
APLLGITKQVYGRYENGVSRLTVSRLIHLCEVLDATPEEIIAPAAPYLWG
ETETKAVLLLATIVKLRTFDEEILQDIFSLLSRIDETGSDSGDRAMKVAS
TSATADDRE
>RHE_PD00181 nopaline catabolism transcriptional regulator protein, LysR family
MRRVARPRLRFPAMDVTDSGVKIRHLQILREVMRAGSERLAAQMLRITQP
AVSQNIKQLEETVGFALFRRENNRLVPTVKAWEFLRTIDAAFAGLDRIGP
SIDFLRNNDTRMIGIAAPSAFSFATLPKVVKRIRERSRSYAVQVKSGTYE
QIADHVLNGRSDLGISRLPLDERILDWVPVGSATNVCLFPANHRFAAQQL
VTAEDLASEAIIDIDPQIASHQMSVNALRYMGTAPDIAVEYDANGHDIGY
VMAGIGVSITNEIIASEYAEFDVAFREFQPGATYHYVVVWQKDRKLSDSL
RFALEEIVAALTDRAA
>RHE_PD00082 probable transcriptional regulator protein, GntR family
MARQPIGSSWIGKPTSTQRAQSSRIVANDRSSDNLIESSPRSSHIFSSNS
LVLRRTLIMVDVELQVARQNASLRVQVEERLRQAIATGKFKPGQRLVERE
LCEMIGVGRTSVREALRQLEAEGLITSFPHKGPVVSIITYEEAAQLYTVR
ALLEGFAGQQFAENGTAEDIATLQDAVREFEASAESGVGHRLIAAKNAFY
DCLMDGSKNVFVRQMLTSLHNRINLLRMTSMTQPGRLKHSIAEIKEIAEA
IQNRNGPRAAAACKHHIDMAAKVALEYLRNNTSG
>RHE_PD00320 probable insertion sequence transposase protein
MKASQFSDAQKAFILKQGDEGVSIAEICRKAGISQTTYFNWKKKYAGMLP
PEMKRRKQLEDGNSRLKKIVADLTLDREMLQDAIRRKL
>RHE_PD00081 hypothetical conserved protein
MRRALRKLGADIHDARRRRRLPMAVVAERAFTSRSTLQKIEAGDTNVSIG
IYAGVLQALGLLDGLSQVADIRNDSVGQSLANAELPKHAHPRRSPGSSRD
G
>RHE_PD00176 putative transcriptional regulator protein
MKRYVAAQVRTSRPAQAKQSDVARESVHPVDRHVGQQIRIRRMQSNVSLG
DLGAGIGVSLQQVQKYESGKNRVSASMLYELANCLKIPVSRFFEGLPDPE
TTQGQQIITEIDEKIAYISTAEGRRLIDDVLLLSPRVRSRVVALVSSIVD
EEMEEHKDVSP
>RHE_PD00173 putative transcriptional regulator protein, AraC family
MGIIPSIHPERMKKSQGEIILHQQGLWSHARADVVRRRSLGRQVIDVVAD
DHLIFLNIRGTAASGENFVDGRRVEFSPRPDGSLVYIPPGCHWSGWDEGD
AEGCYLMITVTQDFFSNLTTKLPRVGTLRPELGFRDLPIQCLARQIAGEL
SHDDSVGSLIVEGHLAAIFGLLQRRSGTSGRLSRGGLSPTVLKRVIGRIE
AHIDRPPSVRALAEEAGLTYEHFSRAFKQSQGSTPYGFYNQRRLERVTDL
LRTTAISVTEIAIACGYSSGSHLSTRFRRETGFSPAEYRALWKE
>RHE_PD00237 hypothetical protein
MTEDLASYRSSRGLVSTADPEVDKAIYRKPGFGGEITSLGHMEELISAFL
KKTREAQGLSRADVAPMLGLSIPVYGRYERAFSKMTVTRMIHLCEILGFM
PIDMIFEAAPHLWGRTSEEAEDCLTLARILRRLPNGTTRDLIRLLQRMIP
DDDESDRGISDVAEPVK
>RHE_PD00067 putative transcriptional regulator protein
MRSGRIPAIFFDRAVRAALGCGNPYTWLMPAVTASHSLTFGRGACGVCPG
SSELKATGPSCTVSNSPISGFSEFSAGAHRVKLSIGVSTMKRYAAAQVRT
SRPAQAEQSNVARELVHPVDRHVGQQIRIRRMQSNVSLGDLGAGIGVSLQ
QVQKYESGKNRVSASMLYELANCLKIPVSRFFEGLPDPETTQGQQIITEI
DEKIAYISTAEGRRLIDDVLLLSPRVRSRVVALVSSIVDEEMEEQKPVGS
SAGS
>RHE_PD00135 probable transcriptional regulator protein, AraC family
MSPSKIDHFSLKGTCSEELAAALSRLSPQSEAHVHGDKTIAYDVHAITNG
PIAVIAAHYEGDLTVQHRGPAEANIIMLPLHGRSVVTVDGRQIPSEGTRG
VFVNSMSASTTQFIGPRKHLGLRIAHDELTRRLGCRLNTPIRGSLDFSPE
IDLSVGFGSLLVQLVPVLYAGLRDGTLLQSPIALHHLTETTMELLIEAAQ
HRYSSELCRVAESPLPKAVKRAVDYMRANITRPLSLEEIATACGVSRRTL
QSGFRNFRNTTPLAFLQHLRLELVHQELMTGEPGLSVTQVALKWGFVHRG
RFSADYRKRYGVLPSETLRIS
>RHE_PD00040 probable transcriptional regulator protein, LysR family
MVSTRADLADLETFVAIARAGGFRKAAALRGVSGSALSHSIRGLEARLGV
RLFHRTSRSISLTAAGEVLLAELEPRFLGIQAAMDLLDSFRSGPTGRVRV
TTLRDAAELLIAPRLHSFRKSYPDVEVEVSVEDRFIDMVAEGFDAGIRYG
GTVPEGMIASRLTSELEWIVVGSPAYLNERGRPARPEDLLTHECIRIRTG
TDHLCKWELGDGDRMVSLDVPGLLTLGDSELSIRMAEEGGGLFYCLQARV
EDKLAAGSLEVVLPDWTSTGPGFHAYYVSHRQVPSALRTFLDYLKAPVAG
D
>RHE_PD00330 probable insertion sequence transposase protein
MKASQFSDAQKAFILKQGDEGVSVAEICRKAGISQATYFNWKKKYAGMLP
PEMKRLKQLEDENSRLKKIVADLTLDREMLQDVIRRKL
>RHE_PD00353 plasmid partitioning protein RepBd
MPLLGVTRKERDPATKLTANIGNALREQNDRLGRAEEIERRLAEGQAVVE
LNASSIEPSFVQDRMQGDIEGLLASIREQGQQVPILVRPHPVKPAHYQVA
FGHRRLRAVSELGLPVKAVVRDLTDEQLVVAQGQENNEREDLTFIEKARF
AHKLNKQFPREIVIAAMSIDKSNLSKMLLLVDALPSELIDAIGAAPGVGR
PSWQQLAELVEKASPPAGAAKYAASEEVQALPSSERFKAVIDHLKPRRTA
RGLPDVLSTPDGDRLAQVTQSKSKLEITIDRKATPDFAAFVLEHLPALYQ
EHRAKHQRKQGV
>RHE_PD00109 putative transcriptional regulator protein, AsnC/GntR family
MERELCELIGVGRTSVREALRQLEAEGLITSYPHRGPVVSTISYEEARQL
YSVRALLESFAGQEFAENGSNEEIVALLETVEAFEAAAKSGSGTRIIEAK
TAFYDCLMTGSKNVFVKQMLTSLHNRVTLLRMTSMTQPGRLQNSVFEIRE
IAAAIALRDGDRAAALCKRHIEIAAKVALDYLSKNPVETSE
>RHE_PD00098 putative transcriptional regulator protein, AraC family
MTESLFSKPDEGTLVKDNFIEGSDPERLLPLISSPLASSDLAQHDSRSLN
SRCSRISLDGFGVADAHHEGAFSVMIDSPVDVVTVFLPASGNAVFHWSGQ
QVESPHVANAPLNARQDGIRSQLSLTIDTQSLRDKLSRMLDRTISGNLQI
QPTLDLASSAGTLMRELALSAHRGLSAGGALRQCPSAYSSLLDAIEYLLI
ESCMHRYTDELRRPSPSPTPRHVKRAMEFMEEHMAQPISLNDIAAAAKVS
VRTLQHGFRQFRNTSPTMHLRDLRMCAARQELLQNGAKISVSEIALKWGF
THLGRFAAEYKRRYGELPSKTVHMSDVLPHRRSMCASQASPPES