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# Phage Gifsy-1

>SC3752 putative transcriptional regulator, LysR family
MEVSLFDRTSRVVKLSPDGEKFLPAAMRVVEEFQRAENYARDLKEIKKSL
VRVVGAPLIACAFLPQIIHAFKQQHPHTHVQLIDKPMSQLQKSIMLGEAD
FGIGPERPLEPEIDKQTLFTTEIALYCHPDYRLHKKTVRWEEIQSEELIA
VGNESIPMISATAGVRIKPKMTVEHMATAMSLAAQCEGVVIAGTFSRHYA
KSYQLATCSLTPPLRRNMNVYYHAWRAQTPATQRFKDFLFSYVGEHHDAP
ANQRGRPGIKAG
>SC2834 putative acetyltransferase
MMFTDWHEAAIGKTHNRMNFDCGDADLNQFLQRHARQNHEKGTTKTYVAL
DNSDVTRIHGFYSVSPASLIYAQVPGAISKGLGRYDVPVFRLGRLAVDKS
MQGQGLGAQLLLSAGKRCIQAALQVGGVALLIDAKNKQVCDWYKGFGAVP
LNDQPLSLLLSFKTLYAALSASGRL
>SC2700 hypothetical protein
MQPVKLTSDKKIELVFLHSSSKPQKSAQNKVLKTASRLKVIIVPYKENDM
LYHVVIEKKPVKTGKDGAEENKTDLTKEQLIARFIEPYELGNPITVNGTT
IQTSEINRLTVKATEASIESFIPAIEAEDRNSSVIMFGGPSYLERAIYRA
PDVTDEFITGPAGSKKPIASKKPNKSTTNTKSDKVFIVHGHDDAAKIKTA
RFVEQLDYKAIILHEQASSGRTIIEKIEQFTDVGFAVVLYTPDDIGNAKD
NADDLQLRARQNVVFEHGFLIGKLGRDRVVALVDGAIELPNDISGVVYIK
MDEANAWHLQLAKEMKQAGFNIDMNKLV
>SC3296 putative regulatory protein, gntR family
MKKIQRTQTRDHITQMLRYEILSGNIKAGEELAQESIAEQLGLSRMPVRE
ALQSLEQEGFLIRLPNRHMQVAHLEADRVSHIFRVIAAMAAEMFSLIPSE
VGDALLIRAQALAVAEDKSCELECHAMLISYVNNRYLEKVYQQFLDGYVS
YVILHLKKDNQESAQLFAELADVIRQGRRDEIGQVMQRYFLSLAEIMRQH
MKDWESAEA
>SC1200 hypothetical protein
MTGKRNAPTITHDEMAAKWMEDPAFKAEYDAIADEFALLDEMLAARKEAG
LTQAEVAERMGTKATAITRMESNLAAGVSGPSFTTLKKFAQATGKKLQIR
FV
>SC2634 putative DNA-binding protein
MRERKMNFGERLQRVLNETGITQSELGRRVGATSQSVNGWCQSGILPRKD
ILELLPKATGKPLYWFFMEDDEESDVPERLTQGGPTDLNDRQKRLLEIFD
QLPTVEQDRFIELAGARLQELDDFMAEYQRRRKIEPPSR
>SC3932 hypothetical protein
MNGTDLLYKTNISFVIVNVGCFMTQPISVIARSLVRERQRTGLSLAEIAR
RAGIAKSTLSQLEAGNGNPSLETLWSLCVALDIPFARLLEPQVQKTQVIR
RGEGTKVVAEQAHYQAILLAACPPGARRDIYLLLTQPGADRISHPHPPGS
VEHIIVTQGKALVGLTEAPEELAEGDYICYPGDQAHIFKALEPDTQAILV
AEQN
>SC0452 putative regulatory protein
MTRRADRLFQIVQILRGRRLTTAALLAQRLAVSERTIYRDIRDLSLSGVP
VEGEAGSGYRLMAGFDLPPLMLTHRESEALMVAIRLLKTWGGDSLSRELE
SAQEKVLAILPEESRRKAEQTRIYAPDLGTSPHSRSAFDLIHQAVSAQQV
LALHYRDEAGHLSSRDIQPLGLFFWGEHWLLVAWCERREDYRCFLLDRCL
QITPLNRRFRETIDRSLRDFLRKVEHEKMP
>SC3605 putative transcriptional regulator
MQQYIGIDVGGTHVKYGVINSDGEELTHHQFDTPEDASTFTRKWQDVVAR
CQQDYDIAAIGVSFPGHINPHNGHAAKAGALAYLDDVNLMELFSGLTDLP
LVVENDANCAALGEMWRGAGQHYDNLVCITIGTGIGGGIIVGRELYRGAH
FHAGEFGVMPVGNNGESMHKIASTSGLMASCRQALALPAEEMPPADVIFE
RMATDVHLREAVNDWARYLSRGVYSVISMFDPGVVLIGGGISEQEKLYPL
LTRHLETFEMWEALQVPIQPCQLGNQAGRLGAVWLAQQKLDRS
>SC1242 Hypothetical protein HI1418
MVPDHVSHTLAQQERTLKFEGKHDVRVQVINGEPWFCLKDVCEILSVSVA
SPTRFQMSMEGVTKNVIPTGGGKQQLTFVNESNLYRVIFRSNKPEAR
>SC4381 hypothetical protein
MPLIRDIHQRFWRLPQLPWLELRTTSESRQAYKRHSHPQLSLGAIIAGET
RCISNGQEYLLRPGELILIPPQSPHSCNPLHERPRSYHMLYLDADWCLTQ
LPHLPADSRLHTTQPQLQDPQLFQLYQQIVTSITQQQTAGLPALIIHLLR
ALPLQSADAEPPCAISRQLVARLVSNLQEPPTLDTLAQEFALRKETLIST
FKQDTGLTPVSFTNMARIEYARHRLRAGDDIADVAYQTGFADQSHFHKTF
VSYTAATPRQYAQNRSISDNK
>SC1411 putative regulatory proteins, merR family
MSYSIGEFARLCGINAATLRAWQRRYGLLKPQRTDGGHRLYSDDDIRQAL
SILDWVRKGVPISQVKPLLSRPVIRLGDNWITIQETMLQHLHEGRIDALR
QLIYDCGREYPRAELVTHLLRPLRSKVSAHLPAVMTLREILDGIIIAYTS
FCLEGDRKAPSNNAFISGWHLSDQCEIWLEALTRTGQKLRLNVLPSPPAV
LAPELFAQRKWFLVTTGKLTAGQKKQLAQWRNVVASLEVITL
>SC1575 putative transcriptional regulator, TetR family
MSYLNRDERREVILQAAMRVALAEGFTAMTVRRIASEADVAAGQVHHHFS
SAGELKALAFVHLIRTLLDAGQVPPPATWRARLHAMLGSEDGGFEPYIKL
WREAQILADRDPHIKDAYLLTMQMWHEETVTIIEQGKQAGEFTFTANATD
IAWRLIALVCGLDGMYVLGIPEMADPAFKYHLDRMITLELFA
>SC3585 putative acetyltransferase
MGRVTAPEPLSAFHQVAEFVSGEAVLDDWLKQKGLKNQALGAARTFVVCK
KDTKQVAGFYSLATGSVNHTEATGNLRRNMPDPIPVIILARLAVDLSFHG
KGLGADLLHDAVLRCYRVAENIGVRAIMVHALTEEAKNFYIHHGFKSSQT
QQRTLFLRLPQ
>SC4190 putative bacterial regulatory proteins, luxR family
MRYLTMQYKNKAKHINIKDGILLLAKKFDLTLSEKKVIYYVAAGLSVKSC
SNLLDRNIKTISTQKRSAYKKMDITTDVELIHLMLNEFYISVDIT
>SC4121 putative outer membrane or exported
MNKNVKLSLIAISVSLFMAKQASAANTWTEARNDAMGGTGVASANYGSGV
LLNPALLAKAKPEDNITVVLPAVGVQITDKDNLQDEIDDISDKVDYYDEV
VDNLTLGQILLNPRGVLNQFQGAARDLADELEYLNGKTARANAGAGLAVS
IPGQTLSVAFIAKGYAHGRVSSSIDQNDIQYLRDIQHDERVAIREAGRAA
LLGSDEITKHLNSTASGRVAIVSDYGIALAKQFVVGEVPVSIGVTPKLQK
TWLYNYTTSIYNYDSSDWNSSRYRNDDTGFNIDAGLAADIGENWTLGVSG
QNLVSRDIDTKDIYITNGMTGETTNYKDTYQIRPLVTAGVAWHNDLLTVS
ADGDLTETKGFKSEDNSQYVGVGAEVRPLSWLAVRAGYRADVKNNDSNVV
TGGLGFAPFNRVHLDLMGLYGEDETWGAGAQLTMTF
>SC3697 putative helix-turn-helix protein
MSAKTKFKSPAFEAIHSAASGLFSVDAIPQETMRSFDTACLSSIKDLQPL
EIKALREELNVSQPVFARYLNTSVSTVQKWESGAKRPSGMSLKLLNVVQK
HGLKVLV
>SC0017 putative protein
MNAHLEIIERQKITTALWGSRSHYVNDANLTQILYLIRRDLKALGINDLF
ITIPRQGLKVNSDIAIIATDSETKGRKKQIVRQTIAALTTVFSVTLGSLM
YLHIH
>SC2588 hypothetical protein
MDSIIKHFEFKSSEGMAVSIDAARFKGKPVFLAVPLAKALGYTNPADALK
KHCKSLIKLNYSESRELGFGDNPRGIQLVGQADVFRLIMRSSLPSAERVQ
DWVCEEVLPALMDTGTYSIRKEKTSSGLPEYRLAKAEQLKALALEKNIAS
ARELMVMLPRLDPMSHQTLAASLINPIIGYDAIPLPVIEEHYYTAAEAGE
KIGVSANKIGRIANANNLKTEQYGKFFLDKSAHSSKQVEAFRYNAEGVKA
LRHLIHGADVA
>SC3295 putative regulatory protein, gntR family
MQKPKLGKIKLLSAKEQVAAVLRKAILSRELVEGQEITLEGIAGMVGVSS
MPVREAFQILAADGLIKVRPNKGAVVLGINEQTIREHYEIRALLESEAVA
KASRPGTDISRIAQVHYAAEKALAENNSAEYSDLNQAFHMEIWNVAGNEK
MKMLLCNMWNGLSMGHKVTEEEYAVISIQEHKSILQALELHDETLARQRM
REHIIRSMENMLTRYVGDPSA
>SC0973 putative regulator
MAKVKHHFTNKSNYACLPTSKAIIYNAVMSDNTLTNGLISRLAELNKKGF
SKTEMARVAGVSKQAVSSWFKTGRISKSSALAIADAAGVSIPWLLGEDVG
EKDGLKPDEQRLLELYRQLPEEEQQNMLRIVSLRLKELDELYAKYMGRRI
RSEPE
>SC1201 putative replication protein
MSMELMVKAMKIRVGNPLRKLVLIKLADNASDHGECWPSYQHIADQCEIS
KRSVMNHISALCECGLVKKVTRKGEKGNSSNIYLLRLDGAGDSLGGSANN
SLPGAANSLGSAGVAPGGSEGDSPRTSHSFEPVKEPVNESKTIGASAYAS
ASVCSARQEYSPEFEQAWLAYPKRAGGNSKSAAYKAWKARLKEGVNAETM
LEGVTRYAGWVSATGNSGTQFVKQATTFFGPDRHFGELWAVPAAPSPGRE
DPMFKSSYGNVDYSQIPTGFRG
>SC0387 putative response regulator
MSQNNYLIDKRVILDCERMTLSCAGESITISESERSLLIAFYEGLFKKDD
LINYVWGRKGVVVSDASYYKLINQLRGSFDKIGLKGASVVTRPRVGVLLS
VSIEPLSDEAQDMPLPAVAETELSTVEVRHDDTIIPPIPGAVNRKDWLYF
CLAALLMFFMIYKVKGENIDYFTLNGSYDGYTFYSVGHDKTHLTDIVEAY
SEMSNEIHKQNGKIIYYIRVPNTNIFVQCLNQLDIAEPKCISIKERY
>SC2211 putative transcriptional regulator
MKYNTMNNDEIILSLCARLKETRLSLSMTQQQLADRAHVGIATIKRIEKG
GGLNLDTLISLLRALDKLHNLDAVLFESELRNFHESYEGGEGSGRLQVRQ
QAADLNNKSSAPQSEEVNYSAALENSLCW
>SC3923 putative bacterial regulatory protein, merR family
MDKMLFERLTQSMSQMNEIIEGTREPSRTFHIDAMKIKEIRQASGLSQSK
FAELISVNVDTLRNWEQGRRSPTGPAKALLRAIANDPRNVIQALRY
>SC1276 putative response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain
MRAIEWIFPHGSRFVEVDMTGSASSVLKTDTRLLSENLFLNYGLESLFKD
VAIIAGNVNYIIFDIDDYYTVQQYITSTFKTVLIGIVTHNEYNFIDEHHA
IYRIKVDASIAEWRELLILAAAGQFFPRSEKVRLTANERNVLAMLVKGMD
IRQISCELNVHLKTIYSVRYHVLTKLGCRTVLDYQILSVSKAFMHWLTIN
NVDNVISRVNSKVIA
>SC3038 putative transcriptional regulator
MLKPQRSHLTMSSQPNQSLIDGIRCLQYLVSSDRAIGCRELARLMDINTT
RVNRLLMTMASIRLTMQDEHRRYLPGPGIHALAAQAIRGSALFSHALPIL
ERHAPKDIVVALGVLWEDQIIYIYHSTPGSQGSQALAGFRMCPAWQSVTG
VALLAAESDEALMQRFTPEQWRNLAPHVAQQCQRGYVLWHHADGEVSMAQ
PLDKHAAALAFAGMWRIDEAEAAARLQALKALNQLIAQ
>SC2951 putative transcriptional regulator
MYLVRHWYADIRYPRRRIPDTCRQPINQGSMMATMLDVSRHAGVSKATVS
RVLNGTGQVKESTRQKVFTAMQALDYRPNLLARSLANRTSNSIGLVVSTF
DGFYFGSLLRRASRQAELHNKQLIVTDGHDTPEREQKAVQMLADRQCDAI
ILYTRYMDEPAILSLIDATEMPLVIINRNVTQARDRAIFFEQETAAFQAV
EYLITQGHRDIACITLPVHTPTGTSRVAGYRKALEKYGIPWQPAKVKYGD
YTLTRGYDACRELLEEGVTFSALFACNDDTALGAAKALRQAGLRIPQDVS
LFSFDDAPGATWLEPGLSTVYLPIADMIATAIDQAVRLANSEPVAPIPPF
TGTLILRESVAAGPFFQRPA
>SC2589 putative bacteriophage protein
MNIVAKSVYNFHGVNLIPVKDVAGIWLTSADIAKALGYKSTKSISNLFTQ
YEDEFSQGMTMVIESVTNGINGSTRRMKVRVFSLRGAHLIAMFARTPVAK
EFRRWVLDILDREVDSSGADRLPTKFHQRVMLYLDTKGGVINTYPLNKDQ
VVMSFDAFVSYFRKKGWIVAPRDEVAKGIMGAIQVLS
>SC0958 putative leucine response regulator
MKLDAWDKNILTLLQRDNRLSQREIAEQVNLSPSAVNRRIAALEEAGIIK
GNVSLIDAGKVGRPVTIVVQVVIENERFNLLEEARQRFVSCPQVQQVYYV
TGDFDFLLVLNVRDMAEYEALTRELFFSSGNIKSFKTIVVMQNAKQEMRV
LIE
>SC0611 putative regulatory protein
MARPKSEDKKQALLEAATQAIAQSGIAASTAVIARNAGVAEGTLFRYFAT
KDELINTLYLHLKQDLCQSMIMELDRSITDAKMMTRFIWNSYISWGLNHP
ARHRAIRQLAVSEKLTKETEQRADDMFPELRDLCHRSVLMVFMSDEYRAF
GDGLFLALAETTMDFAARDPARAGEYIALGFEAMWRALTREEQ
>SC0404 putative transcription regulator, AraC family
MSPISCHSSAAPAMKKIFSVSDFIAFGERYGIDYRFPALPQYTQSSPVLH
GDIEEIALPGGICITRSDVHVLQPYETTSRHSSPLYMLVVLEGNVALAVN
EQTFLLSAGMAFCSQLSEQQTIRAHHGADSKLRTLSLGMYPDGGWRERLP
VSLADEWENSAASARVWQVPEFLLSGLRYAQQPGPHAASRQLMLEGIMLQ
LLGYALNLCQPATQKRGLPVTGEYQRLELIRRLLEQTPEKAYTLNELARR
AAMSPSSLRCKFRHAYGCTVFDYLRDCRLARARRYLMEGYSVQQAAWMSG
YQHATNFATAFRRRYGCSPGELRDASLTASRHCA
>SC4090 unknown
MNEKYTLQFPFTSAAGERIDVLQLRRLKVKDMRAARRASDKPEEWDEPLM
AAMTGLVTEDLAEMDLLDYQALQKRFQAMLSMATEPTAVVAGNGAAGEVV
SLSAQ
>SC2959 putative transcriptional regulator, LysR family
MATTHPLASQTNLQWEQLHTWRELRLNTYLESNANITRGPAWSAPNYLLL
LSMAVQGFGWCVLPCALVEEFEAEKPLAQLDVPGWPRAIAIGLLWNKKTP
PGTAGNWLRYHLQQK
>SC0390 putative response regulator
MINSLSEQLPLKTIGIVLTDDYYTYLGIASLFEDGKCFMFPLNGEYNSCQ
ISASEDIIIIIDGRVLIQGGWKGFKALMQHYPHARRIWLTRRDIGKLYPH
GCDRDPDIDPDLAKPVFIEHFIKYACANDVAVGELAPLTKKEEELLWHFL
YKKSMSQIASSYGMSRKTLYIHRLRICRKYGFKRFFHLLFIYQRSRHIFA
SKICRVDKNADQA
>SC3494 hypothetical protein
MDNLTIEILADNAEYNWRQFDCGEASLNLFLTQHLQRQHNNKILRGYVLR
TTTPEQRVLGYYTLSGSCFERASLPSRTQQKRIPYQNIPSVTLGRLAVDL
SLQGKGWGAILVTHAMKVVWSASLAVGIHGIFVEALNEKAQAFYQRLGFI
SLSGENEHALFYPTKSIEQLFG
>SC1869 putative DNA-binding protein
MSRNYTPAQKAEIQKRLTELIRTHGRMTFGELRKITGLTIFTARHYLEKA
ESCGDLYQAGRSGIFPSEQVFLLWKQKREDARITRFLKTPEGVVSSYDRT
RNVICTECRNSVTMQRGLAFYPGHYREAESA
>SC3665 RPOZ, DNA-directed RNA polymerase omega chain
MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIA
LREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR
>SC1615 aac6, cryptic aminoglycoside resistance gene
MDIRQMNRTHLDHWRGLRKQLWPGHPDDAHLADGEEILQADHLASFVAMA
DGGAIGFADASIRHDYVNGCDSSPVVFLEGIFVLPSFRQRGLAKQLIAAV
QRWGTNKGCREMASDTTPENTISQKVHQALGFEETERVIFYRKRC
>SC4174 adiY, transcriptional activator of adiA (AraC/XylS family)
MRICSNEPCIVLLTEKDTWLRVNGKEPISLKANHMAILACENNVIDISSL
NSVLVIQVSRNNIKDYLQFLNKDLSHLPVWQRNADPLLTANCLTPDIFRV
AARYSAMETPDEIVSERTRALLFTVLSRFLDHKKFISLLMHMLRSRISDS
VYHIIQSDIHKDWNLSAVASCLCLSPSLLKKKLKNENTSYSQIITTCRMR
YAVNQLLMDGKNISQVSQLCGYNSTSYFISVFKEFYGMTPLHYVSQHRER
SAA
>SC4317 agrR, putative arginine repressor
MKEYDDYSAKEQQQLAVCQRLISEKSYLSQEEIRRDLQNEGFEGISQSTV
SRLLKLLGAIKIRNTKGQKIYSVNPQRRPSPDAGRSIAEMVVSVEHNSEF
ILIHTAAGYGRAVARILDYHALPEILGVVAGSSIVWVAPRVVQRTALVHK
QINYLLKMNLNS
>SC0557 allR, putative regulatory protein
MTEVRRRGRPGQAEPTAQKGAQALERGIAILQYLERSGGSSSVSDISGSL
DLPLSTTFRLLKVLQAADFVYQDSQLGWWHIGLGVFNVGSAYIHNRDVLS
VAGPFMHRLMLLSGETVNVAIRNGNEAVLIGQKECKSMVRMCAPLGSRLP
LHASGAGKALLYPLTEEELVGIVVNTGLRRFTPTTLVDLPILLKNLEQAR
EQGYTVDQEEHVVGLNCIASAIYDDAGSVVAAISISGPASRLTEDRFISQ
GELVRDTAKDISTALGLKPPVA
>SC0098 araC, transcriptional regulator (AraC/XylS family) for ara operon
MAETQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLT
IRGEGVINNNGEQFVCRPGDILLFPPGEIHHYGRHPDASEWYHQWVYFRP
RAYWQEWLTWPTIFAQTGFFRPDEARQPHFSELFGQIISAGQGEGRYSEL
LAINLLEQLLLRRMAVINESLHPPMDSRVRDACQYISDHLADSHFDIASV
AQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVG
RNVGFDDQLYFSRVFKKCTGASPSEFRAGCE
>SC4443 arcA, response regulator (OmpR family) in two-component regulatory system with ArcB (or CpxA), regulates genes in aerobic pathways
MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINL
VIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDY
ITKPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRS
LIGPDGEQYKLPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRT
VDVTIRRIRKHFESTPDTPEIIATIHGEGYRFCGDLQD
>SC3298 argR, repressor of arg regulon (ArgR familiy)
MRSSAKQEELVRAFKALLKEEKFSSQGEIVLALQDQGFENINQSKVSRML
TKFGAVRTRNAKMEMVYCLPAELGVPTTSSPLKNLVLDIDYNDAVVVIHT
SPGAAQLIARLLDSLGKAEGILGTIAGDDTIFTTPASGFSVRDLYEAILE
LFEQEL
>SC3789 asnC, transcriptional regulator (AsnC family) for asnA, gidA
MENYQIDNLDRGILDALMENARTAYAELAKQFGVSPGTIHVRVEKMKQAG
IITGARIDVSPKQLGYDVGCFIGIILKSAKDYPSALARLESLDEVTEAYY
TTGHYSIFIKVMCKSIDALQHVLINKIQTIDEIQSTETLIVLQNPIMRTI
KP
>SC2133 baeR, response regulator in two-component regulatory system with BaeS (OmpR family)
MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLINHGDKLLPYV
RQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGL
EIGADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLMIDESRF
QASWCGKALDLTPAEFRLLKTLSLEPGKVFSREQLLNHLYDDYRVVTDRT
IDSHIKNLRRKLESLDAEQSFIRAVYGVGYRWEADACRLV
>SC4171 basR, response regulator in two-component regulatory system with BasS (OmpR family)
MKILIVEDDTLLLQGLILAAQTEGYACDGFSTVRAAEHSLESGHYSLMVL
DLGLPDEDGLHFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLV
KPFALEELHARIRALLRRHNNQGESELTVGNLTLNIGRHQAWRDGQELTL
TPKEYALLSRLMLKAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDK
VGKSRIRTVRGFGYMLVATEES
>SC4400 bglJ, transcriptional regulator (activator) of bgl operon (LuxR/UhpA family)
MENRISKRNVALVEKCVMSTIGIKGLFDAMPDCRHTLHIFSKPSAFYKAA
LKTPFSAVIFSLSALRTERRTGLSSLTELAINYPHMRRLVIADDDAEARL
ISALSPLPLDGVISKASPLDVLQDALFTSLNSARRTTERTDNLWELHQNC
MLSPTEREILRFMSNGYSMPQIAVQLECNIKTIRAHKFNVMSKLGVSSDA
GLLDAADILLYLRAGDATALQHRV
>SC1855 bls, putative acetyltransferase
MDIQITHQVTEFDKEELLAGLRSYNAQFVDFSKNEQLGVYCRNESGEMVG
GLIADRKGPWLCIDYLWVSESARSNGLGSKLMEMAEKEGLRKGCVHGLVD
TFSFQALPFYEKQGYILQMSLPDFPKVGSQRHYLIKPGL
>SC2570 budR, putative transcriptional regulator, LysR family
MNIKQLHSFLILCDELHYGRAASRLFITQPSLSQQIKQLESSLKTILFKR
KGRGIKLTKAGIILQRHANKIMLDLKNAENELLPYQDQQRDTISIGVSGS
YLVLPAFRNFMAHHPEISLNVKEFSTEQTIKKLTDSAVDIGIVYRTALPA
QLSSTMLFEDEIIAAIPLSHPLATRERLHLKDLNDQPIIVLNDSLLLRGI
ITTEFNNRKVVPNVICELDNHYSCLEYAEAQIGIAFITRSLTHLSTPKNV
RLFSLGIPAFFIPVMLVHSNDLSLDNATICLLKQIKNFYTVDNKSAPEKS
WPEQKIGV
>SC2552 cadC, transcriptional activator of cad operon (OmpR family)
MQQPVVRIGEWLVTPSVNQISRQGRQITLEPRLIDLLMYFAHHPDEVLSR
DNIIDHVWMRTIVTNHVVTQSISELRKSLRDGGDSNAEYIVTVPKRGYKL
TAPVIWCEENSDEIDNSSTSPPPPIAATNAEPTEGATAATPVPPASLQTP
TKKAKKPRIAAFWTWVMFLLSLATLVVFIVMSVVDHNAAVTKTRLLLNPR
DIDVRFEGGNSCNNWVSQESYAIGLGGLITDLLNTYSTFMVHDKTNYRVN
EPSSSGKTLTIQFVNQRHYRAQQCFMSVVLIDNADGSTMLDKRYFVTNTN
QLSIQDDLFNSLSFVLTQPWPDRMREQLALFRTPQNTALMRFYEARQLIL
SGDAQALSKASDILNGIIKETPDFNYAYEYKVLVDVLRQSQQPFDKEQVA
ALNEEFKKIDQIPGVEKTSVYYKIKTVDLLGKGDIDAAYEEINKSIELEM
SWFNYVLLGKVYEMKGENRLAADAYLTAFNLRPGENTLYWIENVVFQTSV
QKIVPYLNSFLAED
>SC1665 cafR, putative bacterial regulatory helix-turn-helix proteins, araC family
MMMKKAIIISVLEQIEKNLEERIDIEKLVVITGYSRRSLQDFFKEKCGVS
IGKYIRQCKLSRSATLLKLTSQSVTDIAFRMGFDSVQSYSREFKKTFGVN
PNNYRKADFWDLRNLRPPYWLDCDEHYQFEICQLTSKEIFGFQTSHQIAT
NDLPKKASPIKWKIIHETLRTWGENVYCLSSFKPDNTKDQVIAVSSFFGM
EHNSVDGGKIPMSRVIKCGKYAKFHFVGHKEQYQQFSNTIYMCILPKLNL
IRREGEDIEYFHLASVQKQQSNESIVDLYYYIPVL
>SC0210 cdaR, putative inner membrane protein
MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEG
ALLVLSQGRVVDIDNAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPEH
LRKYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALV
EWAQRLGIDLNQPRVAAVVEVDSGQLGVDSAMAELQQLQNALTTPERNNL
IAIVSLTEMVVLKPALNSFGRWDAEDHRKRVEQLISRMKDNGQLRFRVAL
GNYFTGLGSIARSYRTARTTMMVGKQRMPESRSYFYQDLMLPVLLDSLRG
GWQANELARPLVKLKAMDNNGLLRRTLTAWFRHNVQPLATSKALFIHRNT
LEYRLNRISELTGLDLGNFDDRLLLYVVLQLDEQR
>SC2489 cdaR, putative regulatory protein
MLRKHYLKGYTARQIVQRAMKIIPYSVNVMDEHGVIIASGEPSRLRQRHE
GAILALKENRIVEIDSATANQLKGVRSGINLPISFHEQLIGVVGITGEPE
EVRAYAELVKMAAELVIEHMVLIEQRQWDKRYREELINQLILRENSTESL
RSMAAYLGIDLAVPRVVLIIELSQPDREALRNVMDYFENHARNHLVTFTE
FNELIIIKPITLKEGKWNTRQEMGELQIFKSWAASSGFSRILVGGYFAGE
TGLHRSLLTARATQAMAKRQKLRSQYIFYHDHALPALLSGLSESWQVQEL
SRLWLQLAQHDAKGVLQQTLRTWFEHNCDLTQTAKALHIHVNTLRYRLQR
CEDITHIKINELKSTLWLYIGMELQAESVPSDKLPLPGRIEIC
>SC1336 celD, transcriptional repressor of cel operon (AraC/XylS family)
MMQLQVNATEIKTVYEQQLFNGKNFHVFIYNKTESVTGLHQHDYYEFTLV
LTGRYYQEINGKRVLLERGDFVFIPVGSNHQSFYEFGATRILNVGISKRF
FEQHYLPLLPFCFVASQVYRANSTFLTYIETVIASLNFRGNGLDEFIEVV
TFYIINRLRHYREEQVYDDIPQWLKATVEIMHDKTQFGEHALENMVRLSA
KSQEYLTRATRRYYSKTPMQIINEIRINFAKKQLEMTNYSVTDIAYEAGY
SSPSLFIKTFKKMTSFTPNSYRKRLTEINE
>SC3566 celR, putative bacterial regulatory proteins, lacI family
MAVQNKKRAKLIDVARHAGVSPGTVSNALHNTRFVEPQTRRRIEEAIVAL
NYTPNIRARQLRTGKTNTIALLSSVPLAIASGASRLGFMMEVALTSAMMA
LEKQHALILVPPGANPLDAVSFDAAILIEPAENDPQLQALAQAGIPCVTI
GRTPGTDTLVPWVELHSAATAQLLLTHLEASGASKCALFVGNTRRTSVLE
SEAAYQRWCAGRQAPVVYSLNESEGENAGYQAAQQLLQAHPDVDGVLVLI
DTFASGAVRAFQEQDIAIPEQMRVVTRYDGIRAHESLPPLTAVNMHLDEV
ARQTITLLFAVLSGEKVSYSDGIMPELVVRASTCR
>SC0046 citB, putative transcription regulator sensor for citrate
MDSITTLIVEDEPMLAEILVDTIKIFPQFSIVGIADKLESAKKQIRLYQP
QLILLDNFLPDGKGIDLIRHTISTNYTGRIIFITADNHMDTISDALRMGV
FDYLIKPVHYQRLQHTLERFTRYRSSLRSSEQANQTHVDALFNIQAKEQT
AEPNSGLRGIDENTFNRVRQIFADPQAVHTADTLAQILGSSKTTARRYLE
QGVKNNFLEAEISYGKVGRPERLYRGKV
>SC1171 cobB, putative nicotinate-nucleotide dimethylbenzimidazolephosphoribosltransferase, homolog of virulence factor
MQSRRFHRLSRFRKNKRLLRERLRQRIFFRDRVVPEMMENPRVLVLTGAG
ISAESGIRTFRAADGLWEEHRVEDVATPEGFARNPGLVQTFYNARRQQLQ
QPEIQPNAAHLALAKLEEALGDRFLLVTQNIDNLHERAGNRNIIHMHGEL
LKVRCSQSGQILEWNGDVMLEDKCHCCQFPAPLRPHVVWFGEMPLGMDEI
YMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGSEF
EEKHYGPASQVVPEFVDKFLKGL
>SC1046 copR, Copper resistance; transcriptional regulatory protein
MTIMSSCWRFTDSLTSLWHTALMKILLIEDNQKTIEWVRQGLTEAGYVVD
YACDGRDGLHLALQEHYSLIILDIMLPGLDGWQVLRALRTAHQSPAICLT
ARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPVFTRLTIN
GLDMDATKQSVSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWG
INFDSETNTVDVAIRRLRAKVDDPFEKKLIMTVRGMGYRLQAETSQNG
>SC3950 cpxR, response reguator in two-component regulatory system with CpxA, regulates expression of protein folding and degrading factors (OmpR family)
MNKILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDDSIDLLLL
DVMMPKKNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPK
PFNDRELVARIRAILRRSHWSEQQQSSDNGSPTLEVDALSLNPGRQEASF
DGQTLELTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMH
ISNLRRKLPERKDGHPWFKTLRGRGYLMVSAS
>SC4433 creB, response regulator in two-component regulatory system with CreC (OmpR family)
MQQPQVWLVEDEQGIADTLIYTLQLEGFTVELFARGLPALEKARQQRPDA
VILDVGLPDISGFELCRQLLERHPALPILFLTARSDEVDRLLGLEIGADD
YVAKPFSPREVSARVRTLLRRVKKFAAPSPVVRTGHFELNEPAAQIAWFG
TPLSLTRYEFLLLKTLLLSPERVYSRQQLMDIVWSDAQETFERTVDTHIK
TLRAKLRAINPDLSPINTHRGMGYSLRSV
>SC0339 cro, regulatory protein cro (Antirepressor)
METISQRLKQKRTELKMTQAQLAEKAGMKQQSIQQIESGETKRPRFLLEL
ATALQCDPSWLLYGKKRNKAA
>SC1090 csgD, putative transcriptional regulator (LuxR/UhpA family)
MFNEVHSSHGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLEDI
SAGCIVLMDMMEADKKLIHYWQDNLSRKNNNIKTLLLNTPDDYPYREIEN
WPHINGVFYATEDQEHVVSGLQGILRGECYFSQKLASYLITHSGNYRYNS
TESALLTHREKEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAV
KNRTQAVSWANDNLRR
>SC2547 csiE, stationary phase inducible protein
MMPTIAPPSVLSAPQRRCQVLLTLFQPEPIATVEIFSALNGVDDDTARED
ITETSLEIQRYHRLAITTCQNGCYRIEGTALDQRLCLLHWLRRGLRLCPT
FVTQQFTPALKNALKQRGIARPLYDDINLHALINLCARRLQKPFEHRDVQ
FLRLFLQYCLLQHHAGITPEFNPVQQIWAQSCAEYPLAQEIGRHWQRHVM
QAAPLNEALFMALLFSMIRLPDPIRDTHQRAQQLRLEVARLVLRFREKGN
VRFSDEQGLNDQLYVHLAQALNRSLFTIGIDNTLPEEFNRLYPRLVRTTR
EALAGFEAEYGIHFSEEETGLVAVIFGAWLMQDNDLHERQIVLLADKNDA
LETHIEQQLRELTLLPLNIRRISLQAFQKEGCPRGVALIVTPYATPLPLF
SPPLIHADRALTEHQQQQIRKILES
>SC3581 cspA, Cold shock protein cspA (CSP-A)
MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKSLDEGQK
VSFTIESGAKGPAAGNVTSL
>SC1999 cspB, putative cold-shock protein
MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRTLNENQE
VEFSVEQGQKVHQRSTLWRFKATDITNKIHFRCPCCHGSQYRTSTFDVTE
QNPFGAKCIFCKSTMITFDNVGLYIRSGQVPLDFRK
>SC1831 cspC, Cold shock-like protein cspC
MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTLAEGQNV
EFEIQDGQKGPAAVNVTAI
>SC0898 cspD, CspA-like protein
METGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRF
DVHQGPKGNHASVIVPIEAEAVA
>SC0658 cspE, RNA chaperone, negative regulator of cspA transcription
MSIFHVKVILMSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNG
FKTLAEGQRVEFEITNGAKGPSAANVTAL
>SC1254 cspH, cold shock protein-like protein
MSRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISSCRQHETEALIPGIR
VEFCRINGLRGPTDANVYLS
>SC0540 cueR, putative heavy metal transcriptional repressor (MerR family)
MNISDVAKKTGLTSKAIRFYEEKGLVTPPLRSENGYRTYTQKHLNELTLL
RQARQVGFNLEECGELVNLFNDPRRHSADVKKRTLEKVAEIERHISELQS
MRDQLLALAESCPGDDRADCPIIDNLSGCCHHKAQKPR
>SC1710 cysB, transcriptional regulator for cysteine regulon (LysR familiy)
MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFA
RSGKHLTQVTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATT
HTQARYALLGVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATE
ALHLYDDLVMLPCYHWNRSIVVTPDHPLAATSSVTIEALAQYPLVTYTFG
FTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMAVDP
LADPDLVRIDAHDIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTRDVV
DTAVALRSNEEIEAMLQDIKLPEK
>SC3983 cytR, transcriptional repressor (GalR/LacI family)
MKDVALKAKVSTATVSRALMNPDKVSQSTRSRVEQAALEVGYFPQSMGRN
VKRNESRTILVIVPDICDPFFSEIIRGIEVTAAEQGYLVLIGDCAHQNQK
EKTFLNLIITKQIDGMVLLSSRLPFDASVEEQRNLPPMVMSNEFAPELEL
PTVHIDNLTAAFNAMNYLLDLGHKRIGCIAGPEDMPLCHYRLQGYVQALR
RSGIVVDPHYIARGDFTFEAGANALKQLLEQPLPPTAVFCHSDVMALGAL
SWAKRQGLKVPDDLSIIGFDNIALAEFCDPPLTTVAQPRFDIGREAMLLL
LDQMQGQNVSSGSRLMDCELIIRGSTRALP
>SC1650 dbpA, ATP-dependent RNA helicase, stimulated by 23S rRNA
MTAFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTG
SGKTAAFGLGLLHRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPN
TKILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHIL
VMDEADRMLDMGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRVQQ
QPIRIEIDTVDALPAIEQQFFETSAHEKISLLQTLLSQHQPASCVVFCNT
KKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDV
AARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEA
QRANILSEMLQLKLNWLNAPARQSLLPLAAEMATLCIDGGKKAKMRPGDI
LGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWKQLQNGKIKGKS
CRVRLLK
>SC4181 dcuR, response regulator in two-component regulatory system with DcuS, regulates anaerobic fumarate respiration
MINVLIVDDDAMVAELNRRYVAQISGFHCCGTASTLEKAKEFIFNSENHI
DLILLDIYMQQENGLDLLPVLHSAGCKSDVIVISSAADAATIKDSLHYGV
VDYLIKPFQATRFEEALTGWLRKKTAMEKRQYYEQSELDLLIHGNSSSEQ
EPRRLPKGLTQQTLRTLCQWIDAHQEQEFSTDELANEVNISRVSCRKYLI
WLVNCHILFTSIHYGVTGRPVYRYRVQPEHYSLLKQYCQ
>SC3221 deaD, cysteine sulfinate desulfinase
MQINFMMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALTDLGYEK
PSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPELKAPQIL
VLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQI
VVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP
EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW
GMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGD
MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSES
YVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAEL
LGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEELDLETLAAAL
LKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREERPRR
ERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASH
STIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAVPHAGGERRGGGRSF
SGERREGGRNFSGERREGGRGDGRRFSGERRESRGPRRDDSTGRRRFGGD
A
>SC0858 deoR, transcriptional repressor for deoxyribose operon (DeoR family)
METRRDERIGQLLQALKRSDKLHLKEAATLLGVSEMTIRRDLNHKSAPVV
LLGGYIVLEPRSASHYLLSDQKSRLVEEKRRAAQLAAGLVQAHQTVFIDC
GTTTPWIIEAIDNDLPFTAVCYSLNTFLALQDKPHCRAILSGGEFHASNA
IFKPLDFHETLNNICPDIAFYSAAGVHTSKGATCFNLEELPVKHWAMTMA
QCHVLVVDHSKFGKVRPARMGELSRFDTIISDRRPDEAFVAYAKAQQITL
MY
>SC3714 deoR, putative regulatory protein, deoR family
METKQKERIRRLMELLKKTDRIHLKDAARMLEVSVMTIRRDLSQDDDPLP
LTLLGGYIVMVNKPTSSTNMPLPAKKTHHRDDLPVAILAAGLVRENDLVF
FDNGPEMPLVISMIPDDITFTGICYSHRVFIALNEKPNATAILCGGTYRA
KSDAFYDANNPSALDSLNPRKVFISASGVHEHFGVSWFNPDDLAAKRKAM
ERGLRKILLARHALFDEVAPASIGPLSAFDVLISDRPLPTDYAAHCRNGS
VKVITPDSESE
>SC3748 dgoR, galactonate operon transcriptional repressor (GntR family)
MTLNKTDRIVITLGKQIVSGKYVPGSALPAEADLCEEFETSRNIIREVFR
SLMAKRLIEMKRYRGAFIAPRNQWNYLDTDVLQWVLENDYDPRLISAMSE
IRNLVEPAIARWAAERATSSDLAEIESALNDMIANNQDREAFNEADIRYH
EAVLQSVHNPVLQQLNVAISSLQRAVFERTWMGDAANMPKTLQEHKALFD
AIRHQDGDAAEQAALTMIASSTRRLKEIT
>SC0818 dinG, LexA regulated (SOS) repair enzyme
MALTAALKAQIAAWYKALQDQIPDFIPRAPQRQMIADVARTLAGEEGRHL
AIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIFSKDLPLL
RKIIPDLRFTAAFGRGRYVCPRNLAALASSEPTQQDLLAFLDDELTPNNQ
EEQKRCARLKGDLDGYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCH
YYRECPFFVARREIQEAEVVVANHALVMAAMESEAVLPEPKHLLLVLDEG
HHLPDVARDALEMSAEITASWYRLQLDLFSKLVATSMEQFRPKTTPPLAN
PERLNAHCEEVYELIASLNAILNLYMPAAQEAEHRFAMGELPDEVMEICQ
RLAKLTETLRGLAESFLNDLSEKTGSHDIVRLHRVILQMNWALGMFEAQS
KLWRLASMAQSSGAPVSKWATREIREGQLHVWFHCVGIRVSDQLERLLWR
SVPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHVEQGKL
VIPQMRYEPTIDNEEQHIAEMAAYFREQLESKKHHGMLVLFASGRAMQRF
LEHVADVRLLLLVQGDQPRYRLVELHRKRVESGERSVLVGLQSFAEGLDL
KGELLTQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNL
IQQVGRLIRSHACRGEVVIYDKRLLTKNYGQRLLNALPVFPIEQPAVPDV
IVKPKAKPARRRRR
>SC0656 dpiA, response regulator in two-component regulatory system with DpiB, transcriptional regulation of cit operon (citrate fermentation) genes and of plasmid
MIDRFKPGLILLDNYLPDGKGITLLHELMQSRYPGGVVFTTAASDMETVA
EAVRSGAFDYLVKPIAYERLGQTLTRYQQRRRMLASSDSASQKQIDEMFN
AYARGEPQGDLPTGIDALTLNAVMKLFADPTVRHTAETVAQALTISRTTS
RRYLEYCASRHLIVAEIIHGKVGRPQRIYHGG
>SC3722 dsdC, transcriptional activator (LysR family)
MTEVAMEPLRDTRNRLLNGWQLSKLYTFEVAARHQSFALAADELSLSPSA
VSHRINQLEAELGIQLFVRSHRKVELTHEGKRVFWALKSSLDTLNQEILD
IKNQELSGTLTVYSRPSIAQCWLVPALGDFTRRYPSISLTMLTGNDNVNL
QRAGIDLAIYFDDAPSAQLTHHFLMDEAILPVCSPDYAHRFALQDNLNNL
RHCTLLHDRQAWSNDSGTDEWHSWAQHFAVNLPDSSGIGFDRSDLAVIAA
MNHIGVAMGRKRLVQKRLDSGELIAPFGDMRLKCHQHYYVTTLPGRQWPK
IEAFIRWLQEQV
>SC4216 ecnR, putative bacterial regulatory protein, luxR family
MMERLLGKKVLYYFRVQKTMLKILVIDRCHFTRTGMEAWLNHTDVLSSSL
LVSGMNNLILAKEHILQWKPHLVIADLYGFLNDALPEQPINAFFAACRMT
PLVLLQSGNMPYRPQYASHAVLSKHTPLHELAQRIKGALYTHPLQEAPES
ATPLLSPQEEKVLAMWTEGTSNKEIAYALGIHGKTVYTYKRNIRMKLHMD
NRYSPFLMLPEKID
>SC2747 emrR, transcriptional repressor of emrAB operon (MarR family)
MDSSFTPIEQMLKFRASRHEDFPYQEILLTRLCMHMQGKLLENRNKMLKA
QGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGW
IERRESDNDRRCLHLQLTEKGQAFLQEVLPPQHHCLHQLWSSLSTAEKDQ
LEHITRKLLTRLDQMEQEGTVLEALR
>SC3326 envR, transcriptional repressor for envCD (acrEF) (TetR/AcrR family)
MAKKTKADALKTRQHLIETAIAQFALRGVANTTLNDIADAADVTRGAIYW
HFENKTQLFNEVWLQQPPLRELIQDRLTGCWNDNPLQDLREKFIAALQYI
AAVPRQQALMQILYHKCEFHNGMISEQAIREKIGFHHQSLLEVLQRCMDK
KLISGSLDLDVILIILHGSFSGIVKNWLMNPTSYDLYKQAPALVDNLLKM
LSPDGSVRQLMPNEQQAEEA
>SC2453 eutR, putative regulator ethanolamine operon (AraC/XylS family)
MKKTRTANLHHLYHEALPEDVKLTPRVEVDNVHQRRTTDVYEHALTITAW
QQIYDQLHPGKFHGEFTEILLDEIQVFREYTGLALRQSCLVWPNSFWFGI
PATRGEQGFIGAQGLGSAEIATRPGGTEFELSTPDDYTILGVVISEDVIS
RQATFLHNSERVLHMLRNQLALEVKEQHKAALWGFVQQALATFSESPETL
HQPAVRKVLSDNLLLAMGTMLEEAKPIHSAESISHQGYRRLLSRAREYVL
ENMSEPLTVLDLCNQLHVSRRTLQNAFHVILGIGPNAWLKRIRLNAVRRE
LISPWSQSATVKDAAMQWGFWHLGQFATDYQQLFAEKPSLTLHQRMRQWA
>SC1798 fadR, negative regulator for fad regulon and positive activator of fabA (GntR family)
MLCNGNLTMVIKAQSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIG
VTRTTLREVLQRLARDGWLTIQHGKPTKVNNFWETSGLNILETLARLDHE
SVPQLIDNLLSVRTNISTIFIRTALRQHPDKAQEVLATAHEVADHADAFA
DLDYNIFRGLAFASGNPIYGLILNGMKGLYTRIGRHYFANSEARSLALGF
YHKLSSLCEQGAHDQVYETVRRYGHDSGEIWHRMQKNLPGDLAIQGR
>SC3959 farR, putative regulatory protein, gntR family
MQVDKTSFTPLYKQLFFIICQQIQNGSLPLGSQLPTQKEIARAYNVSLIV
VKQAWSELINAGIISSQRGSGSVVCSVPEGVSYGHTFRGITRDLQDASVA
IENRILEIAPRRARDAQADGLSLPAQHHYLYISRIRCLNNRPFNHEKIYL
DLSFFPDLQLTPQALEHTSLYSLLNVTSDSAIEKVEAILPSADLCEKLQI
AANKPLLSVARQTFQAGKDSPFEYCRYYVLSEYFGEIHYH
>SC3706 farR, putative regulatory protein, gntR family
MKTLSKSSHIPLYQQIVEWIRESIYSGELVEDDRIPSEFQIMDMLEVSRG
TVKKAVDQLVREGVLVQVQGKGTFVKKENVAYPLGEGLLSFAEALASQKI
NFTTSVITSRLEPANRFVAEKLSIKPGQDVLFLKRLRCIGDEKVMLIENR
INIDLCPGIIDVDFTRENLFSAIERLSDKKISFSESRYAAKLIGNERGHY
LDIGEDAPVLHLEQLVFFSRGLAIDFGNVWLKGNKYYLGTILQRLDA
>SC2792 fhlA, formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons (EBP family)
MCDQRVCGQPSGNNLRLIPIIHLPFSHRFAVFSWKSNMSYTPMSDLGQQG
LFDITRTLLQQTDLASLSEALSQLVKRSALADSAGIVLWQAQSQRAQYYA
TRENGRPVEYEDETVLAHGPVRRILSRPDALHCNFHEFTETWPQLAASGL
YPEFGHYCLLPLAAEGRIFGGCEFIRQEDRPWSEKEYDRLHTFTQIVGVV
AEQIQNRVNNNVDYDLLCRERDNFRILVAITNAVLSRLDIDELVSEVAKE
IHHYFNIDAISIVLRSHRKNKLNIYSTHYLDEHHPAHEQSEVDEAGTLTE
RVFKSKEMLLINLNERDPLAPYERMLFDAWGNQIQTLCLLPLMSGKTMLG
VLKLAQCEEKVFTTANLKLLRQIAERVAIAVDNALAYQEIHRLKERLVDE
NLALTEQLNNVDSEFGEIIGRSEAMYNVLKQVEMVAQSDSTVLILGETGT
GKELIARAIHNLSGRSGRRMVKMNCAAMPAGLLESDLFGHERGAFTGASA
QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKLIQT
DVRLIAATNRDLKKMVADREFRNDLYYRLNVFPIQLPPLRERPEDIPLLV
KAFTFKIARRMGRNIDSIPAETLRTLSSMEWPGNVRELENVVERAVLLTR
GNVLQLSLPDITAVTPDTSPVATESAKEGEDEYQLIIRVLKETNGVVAGP
KGAAQRLGLKRTTLLSRMKRLGIDKDALA
>SC0590 fimW, putative fimbrial protein
MLSIAIKEQNSHFEHGLKIIMTRLANQWQQKIDFLPPEEIDNADIAFLAL
DDDWFSAGYYQIPMHTQHQLRVIICNKCDKEKLMFRPCLYMLPHIYREDD
VEEITRKMILILHKRALRHSVPSSICHYCTTRHFSVTERHLLKLIASGYH
LSETAALLSLSEEQTKSLRRSIMRKLHIKTEQQFLKYIRVNLHFLLSK
>SC0588 fimZ, fimbrial protein Z, putative transcriptional regulator (LuxR/UhpA family)
MWCVDLAISQSLRCLTLILKRRTHNSLRHTTMKPASVIIMDEHPIVRMSI
EVLLGKNSNIQVILKTDDSRTAIKYLRTYPVDLVILDIELPGTDGFTLLK
RIKSIQEHTRILFLSSKSEAFYAGRAIRAGANGFVSKRKDLNDIYNAVKM
ILSGYSFFPSETLNFISNTRTPKGGHHDMPLSNREVTVLRYLANGMSNKE
IAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHELL
>SC3323 fis, DNA-binding protein fis
MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNGQDVNDL
YELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN
>SC1119 flgM, anti-FliA (anti-sigma) factor; also known as RflB protein
MSIDRTSPLKPVSTVQTRETSDTPVQKTRQEKTSAATSASVTLSDAQAKL
MQPGVSDINMERVEALKTAIRNGELKMDTGKIADSLIREAQSYLQSK
>SC1960 fliA, sigma F (sigma 28) factor of RNA polymerase, transcription of late flagellar genes (class 3a and 3b operons)
MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGI
GLLNAVDRYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREV
AQAMGQLEQELGRNATETEVAERLGIPVAEYRQMLLDTNNSQLFSYDEWR
EEHGDSIELVTEEHQQENPLHQLLEGDLRQRVMDAIESLPEREQLVLTLY
YQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL
>SC0115 fruR, transcriptional repressor of fru operon and others (GlaR/LacI family)
MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPN
AVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSE
DQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRA
LDREHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQG
FRTAWKDDPREVNFLYANSYEREAAAQLFEKWLETHPMPQALFTTSFALL
QGVMDVTLRRDGKLPSDLAIATFGDHELLDFLQCPVLAVAQRHRDVAERV
LEIVLASLDEPRKPKPGLTRIRRNLYRRGILSRS
>SC2919 fucR, positive regulator of the fuc operon (DeoR family)
MKAARQQAIVDLLINHKSLTTEALATRLNVSKETIRRDLSELQTQGKVLR
NHGRAKYIHRENQDSGDPFHIRLKSHYAHKADIAREALAWIEEGMTIALD
ASSTCWYLARQLPDIPIQVFTNSHPICQELGKRERIALISSGGQLERKYG
CYVNPSLISQLKSLDIDLFIFSCEGIDGGGDLWDSNAINADFKSILLRRA
SQSLLLIDKSKFNRSGEARIGHLDDVTHIVSDAPQS
>SC3203 gadR, transcriptional regulator of sugar metabolism
MNSFERRNKIVDLINTQGSVLVMDLSNTFGISEVTIRADLRLLEEKGLVT
RFHGGAAKPGSHLAEGDNQEVILEDRYQLASDPKKRIAQAAAAMVEEGMT
IILDSGSTTLLIAEALARKSNITVITNSLPAAFTLSENKDLTLVVCGGTV
RHKTHSMHGTIAERSLHGISADVMFVGADGIDATNGITTFNEGYSISGVM
AAAAHKVIAVLDATKFNRRGFNQVLPMDKIDCVITDDTISKQDKAALAKT
GVELMIV
>SC2950 galR, transcriptional repressor of galETK operon (GalR/LacI family)
MATIKDVARLAGVSVATVSRVINDSPKASEASRLAVTSAMESLSYHPNAN
ARALAQQATETLGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHN
EQKERQAIEQLIRHRCAALVVHAKMIPDADLASLMKQIPGMVLINRILPG
LEHRCVALDDRYGAWLATRHLIQQGHTRIGYICSNHTISDAEDRLRGYYD
ALAESHIPANDRLVTFGEPDESGGEQAMTELLGRGRHFTAVACYNDSMAA
GAMGVLNDNGVGVPGEVSLIGFDDVLVSRYVRPRLTTIRYPIVTMATQAA
ELALALAGKCPTPEVTHVFSPTLVRRHSVSTPTDTGHLSTTD
>SC2207 galS, transcriptional repressor of mgl operon (GalR/LacI family)
MITIRDVARQAGVSVATVSRVLNNSALVSPDTRDAVMQAVTLLGYRPNAN
AQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHE
AEKERHAIEVLIRQRCNALIVHSKALTDRELSDFMDQIPGMVLINRIVPG
YAHRCVCLDNVSGARMATRMLLNNGHQRIGYLASSHRIEDDAMRREGWLH
ALQEQGIAASESWIGTGTPDMQGGESAMVELLGRNLQLTAVFAYNDNMAA
GALTALKDNGIAIPLHLSVIGFDDIPIARYTDPQLTTVRYPIASMAKIAT
ELALQGAAGTLDITATHCFMPTLVRRHSVAWRQNAVLITN
>SC2197 gbpR, putative transcriptional regulator, LysR family
MANWAQKLKLHHLQTLVALGEQGNLTHVARMMNISQPALSKWLSQLEDEI
GITLFERHSKGLRPSEGGKLLLQHAQRLINDLERSQYEIARFKQGGLVGS
LKIGCSPVATDCVSQAILSLLNEMPTLHLNIEEKVMTPLLHDLLAGQVDV
VVGRVGGRALQLPLNYQVLYTEPVCFVARPHHPLAARAQIAWSDLAHWRW
IVWPTGTPIRISIDNALVDNGVMLPENTIESASMNVSTNLLQSSDMISIL
SLRLAQRYASQGQLAILNLPKIEQKGSVGMFWRKNETPSLALSRFLYFLA
QV
>SC2922 gcvA, regulator of gcv operon (LysR family)
MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGL
KLFRRRNRSLLLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSL
PPSFAIQWLVPRLSSFNSAYPGIDVRIQAVDRQEDKLADDVDVAIFYGRG
NWPGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPEDLAKHTLLHDAYRRDW
QAYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQGIALANNVMAQSEIEA
GRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKAATEQEKFR
FRYEQ
>SC3454 glpR, transcriptional repressor of the glp operon (DeoR family)
MKQTQRHDAIIELVKKQGYVSTEELVEHFSVSPQTIRRDLNDLAEQNMIL
RHHGGAALPSSSVNMPWHDRKATQTEEKERIARKVAAQIPNGSTLFIDIG
TTPEAVAHALLGHSNLRIVTNNLNVANTLMAKEDFRIILAGGELRSRDGG
IIGEATQDFIAQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSR
HVMLVVDHSKFGRNAMVNMGSISMVDAVYTDTLPPPGVMQVLTENHIQLE
LC
>SC3473 gntR, transcriptional repressor gnt-I, gntUKR (GalR/LacI familiy)
MSLIPHVRGKLGKSIPFIPFRTMKKKRPVLQDVADRVGVTKMTVSRFLRN
PEQVSVALRGKIAAALDELGYIPNRAPDILSNATSRAIGVLLPSLTNQVF
AEVLRGIEAVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTER
THTPRTLKMIEVAGIPVVELMDSQSPCLDIAVGFDNFEAARQMTAAIIAR
GHRHIAYLGARLDERTIIKQKGYEQAMRDAGLVPYSVMMEQSSSYSSGIE
LMRQARREYPQLDGIFCTNDDLAVGAAFECQRLGLKIPDDMAIAGFHGHD
IGQVMEPRLASVLTPRERMGSIGAERLLARIRGEMVTPKMLDLGFTLSPG
GSI
>SC2346 gntR, putative transcriptional regulator
MSILRKRRSTGKVTIADVAQLAGVGTMTVSRALRTPEQVSDKLREKIEAA
VHELGYMPNLAASALASASSHTIAMVVPNLAEAGCSEMFAGLQQILQPAG
YQIMLAESQHRVEQEEKLLETLLASNIAAAILLSVEHSTTVRQWLKNASI
PVMEMGAIRSDPIDMNIGIDNVAAMYELTEMLIQRGYQNIGLLCANQEQW
IFQQHLHGWYKAMLRHHMSPNRVINAALPPNFSTGASQLPEFLLAWPELD
ALVCVSDELACGALYECQRRRIKVPDDLAVVGFGDSDVSRVCQPPLTTMA
VPHRKIGSEAGRALLERLNQGNWSDRKSIASSLCMRESC
>SC3237 greA, transcription elongation factor, cleaves 3' nucleotide of paused mRNA
MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHA
AREQQGFCEGRIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDTD
EEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEQDDVVVIKTPGGDVEY
EVLKVEYL
>SC3435 greB, transcription elongation factor and transcript cleavage
MKTPLITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQY
NKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGDT
LKFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPVGEANWYV
NAIEYVK
>SC2769 gutM, putative glucitol (srl) operon regulatory protein
MVSTLITVAVIAWCAQLALGGWQISRFNRAFDKLSQQGRVGVGRSGGRFK
PRVVVAVALDEQQRVTDTLLMKGLTVFARPVKIAAMQGKHLHELQPDVIF
PHDSLAQNALSLALKLKHG
>SC2850 hcrR, putative transcriptional regulator
MELRNTAFHLLRQLFQQHTARWQHELPELTKPQYAVMRVIAEHPGIEQVD
LTEAAVSTKATLAEMLSRMENRGLVKRENDPLDKRRRFVYLTVQGQTLLA
AAIPLGDRVDDEFLGRLSAEEREQFTQLVRKMMT
>SC0091 hepA, RNA polymerase associated protein, putative SNF2 family RNA helicase
MPFTLGQRWISDTESELGLGTIVAMDARTVTLLFPSTGENRLYARSDSPV
TRVMFNPGDTITSHEGWQLHIDEVKEENGLLVYVGTRLDTEETNVTLREV
LLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPYSGLRGQ
RTNLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAA
ERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYTEAQHDAYNPFETEQ
LVICSLDFARRNKQRLEHLCDAEWDLLVVDEAHHLVWSTDAPSREYMAIE
QLAERVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQKNYR
PVADAVAMLLAGNKLSNDELNRLGDLIGEQDIEPLLQAANSDRDDAQAAR
DELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTVKLPLPTQYQTAIKV
SGIMGARKSAEDRARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTS
HRSQKVLVICAKATTALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWF
AEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRAIYDSAYASL
INYLAAPEETDGFDDLIKSCREQHEALKAQLEQGRDRLLEIHSNGGEKAQ
QLAQSIEEQDDDTNLIAFAMNLFDIVGINQDDRGDNLIVLTPSDHMLVPD
FPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSST
ISLLKNKALPVGTLLVELVYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGN
NLAAQVEFETFNRQLSAVNRHTGSKLVNAVQQDVHAILQLGETQIEKSAR
ALIDNARREADEKLSGELSRLEALRAVNPNIRDDELAAIDSNRQQVLESL
NQAGWRLDALRLIVVTHQ
>SC2808 hilA, invasion genes transcription activator
MPHFNPVPVSNKKFVFDDFILNMDGSLLRSEKKVNIPPKEYAVLVILLEA
AGEIVSKNTLLDQVWGDAEVNEESLTRCIYALRRILSEDKEHRYIETLYG
QGYRFNRPVVVVSPPAPQPTTHTLAILPFQMQDQVQSESLHYSIVKGLSQ
YAPFGLSVLPVTITKNCRSVKDILELMDQLRPDYYISGQMIPDGNDNIVQ
IEIVRVKGYHLLHQESIKLIEHQPASLLQNKIANLLLRCIPGLRWDTKQI
SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCA
LAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI
HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK
LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMF
LSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSERALPTIREFL
ESEQRIDNNPGLLPLVLVAHGEAIAEKMWNKFKNEDNIWFKRWKQDPRLI
KLR
>SC2799 hilC, bacterial regulatory helix-turn-helix proteins, araC family
MVLPSMNKSVEAISNNHLQQPNKFPLINGLADVRDYYVANCLLFKLNKGS
LRIENEFGEFIEQSAPCLFLLEKDQTITLSMSEIEGHIDFSSLEVSYDLM
QKFYKVFYSTRNYNDRELSLKTKPKYFFHADLLPGMSDTFDSILHGVACP
RVCSNVSIDDHDYSYFSLMYLISAFVRKPGGFDFLERAIKITTKEKVYNI
IISDLTRKWSQAEVAGKLFMSVSSLKRKLAAEEVSFSKIYLDARMNQAIK
LLRMGAGNISQVATMCGYDTPSYFIAIFKRHFKITPLSFMRTMNH
>SC2807 hilD, regulatory helix-turn-helix proteins, araC family
MENVTFVSNSHQRPAADNLQKLKSLLTNTQQQIKSQTQQVTIKNLYVSSF
TLVCFRSGKLTISNNHDTIYCDEPGMLVLKKEQVVNVTLEEVNGHMDFDI
LEIPTQRLGALYALIPNEQQTKMAVPTEKAQKIFYTPDFPARREVFEHLK
TAFSCTKDTSKGCSNCNNKSCIENEELIPYFLLFLLTAFLRLPESYEIIL
SSAQITLKERVYNIISSSPSRQWKLTDVADHIFMSTSTLKRKLAEEGTSF
SDIYLSARMNQAAKLLRIGNHNVNAVALKCGYDSTSYFIQCFKKYFKTTP
STFIKMANH
>SC4191 hilD, putative AraC-type DNA-binding domain-containing protein
MLKVFNPSPVQVGSIECLQSAQNWQRKSLSLQGLNLLQSVLIKLTTGKIS
ITTSSGEYITASGPMLIFLAKDQTIHITMEETHEQLNYNLIELDSASIKN
AYNFFLYEHADFSAPLTKPTTKHLLAPIETGVARVFNLLHSSNKSQKLSQ
DKKEYLIRFLLSEFIYEPEAFALFRELSQNTLAENIYNIIISDISRKWAL
KDISDSLYMSCSTLKRKLKLENTSFSEVYLNARMNKATKLLRNSEYNITR
VAYMCGYDSASYFTCVFKKHFKTTPSEFLAFLSSSRHQYVN
>SC0395 hmrR, putative transcriptional regulator
MNIGKAAKASKVSAKMIRYYEQIGLIPAASRTDSGYRAYTQADVNQLHFI
RRARDLGFSVAEISDLLNLWNNQSRQSADVKRLAQTHIDELDRRIQNMQH
MAQTLKALIHCCAGDALPDCPILHTLGQPDDSEPEARTGAVLRRPRRHGL
AKRL
>SC1058 hpaA, 4-hydroxyphenylacetate catabolism
MCQRAIANIDISKEYDESMGSNDVHYQSFARMADFFGRDMQAHRHDQFFQ
MHFLDTGQIELQLDDHRYSVQAPLFVLTPPSVPHAFITESDSDGHVLTVR
EELVWPLLEVLYPGTREAFGLPGICLSLADKPNELAALKHYWQLIEREST
EQLAGCEHTLVLLAQAVFTLLLRNAKLDDHAATGMRGELKLFQRFTLLID
NHFHQHWTVPDYACELHITESRLTDICRRFANRPPKRLIFDRQLREAKRL
LLFSDNAVNEIAWQLGFKDPAYFARFFNRLAGCSPSQFRQREVPSFLN
>SC1050 hpaR, 4-hydroxyphenylacetate catabolism
MHDSLTIALLQAREAAMTYFRPIVKSHNLTDQQWRIVRILADSPSMDFHE
LAFRSCILRPSLTGILTRMERDGLVLRLKPVNDQRKLYVMLTEQGQTLYA
RARSQVEEAYRKIEADFTPEKTQQLMLLLDDLIALGRQHPDSEAEA
>SC1078 hthR, putative transcriptional regulator
MEPQPPRLKPGKILDTLGAMQKSLTRASQRIAQYILAFPRQVTQSSIADL
SRDTQAGEATVIRFCRTLGYKGFQDFKMDLAIELATTESDDSSPLLDAEV
SESDDAHAIGLKLQNTISNVLSETLNLLDMQQVLGVVDALRHCHSVYIFG
VGSSGITALDMKHKLMRIGLRGDAVSNNHFMYMQATLLKAGDVAMGVSHS
GTSPETVHSLRLARQAGATTVAITHNLGSPLCEEADFCLINGNRQGMLQG
DSIGTKAAQLFVFDLLYTLLVQSSPEQARESKLRTMNALDMTK
>SC0787 hutC, histidine utilization repressor
MKQDICKKIAGGVWQPHDRIPSEAELVAQYGFSRMTINRALRELTDEGWL
VRLQGVGTFVAEPKGQSALFEVRSIAEEIAARRHQHRCEVLTLERVQANA
IQASALNVNESDVIFHSIMVHYENDLPVQIEDRCVNADIAVDYLTQDYRQ
TTPHAYLSRIAPLTEGEHIVEAVRATAQECAWLTIKEHEPCLLIRRTTWS
ASRIVSHARLLFPGSRYRLQGRFIS
>SC2788 hypB, hydrogenase-3 accessory protein, assembly of metallocenter
MCTTCGCAEGNLYIEGDEHNPHSAFRSTPFAPAARPALNITGINTPDFAP
SQTAEGDLHYGHGEAGTHAPGMSQRRMLEVEIDVLDKNNRLAERNRARFA
ARQQLVLNLVSSPGSGKTTLLTETLMKLKDRVPCAVIEGDQQTVNDAARI
RATGTPAIQVNTGKGCHLDAQMIADAAPRLPLDDHGILFIENVGNLVCPA
SFDLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKVDLLPYLNFDV
EKCIASAREVNPEIEIILISATSGEGMDQWLAWLEAQRCA
>SC3005 iciA, inhibitor of replication initiation, also transcriptional regulator of dnaA and argK (LysR family)
MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLENMFGQPL
LVRTVPPRPTEQGQKLLALLRQVELLEEEWLGDEQTGSTPLLLSLAVNAD
SLATWLLPALAPVLADSPIRLNLQVEDETRTQERLRRGEVVGAVSIQHQA
LPSCLVDKLGALDYLFVASKPFAERYFPNGVTRSSLLKAPAVAFDHLDDM
HQAFLQQNFDLPPGSVPCHIVNSSEAFVQLARQGTTCCMIPHLQIEKELE
SGELINLTPGLLQRRMLYWHRFAPESRMMRKVTDALLEYGHKVLRQD
>SC4066 iclR, acetate operon transcriptional repressor (IclR family)
MVAPVPAKRGRKPAATTAPVTGQVQSLTRGLKLLEWIAESNGSVALTELA
QQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWAVGAHAFIVGSSFLQSRN
LLAIVHPILRKLMEDSGETVNLAVLDQSDHQAIIIDQVQCTQLMRMSAPI
GGKLPMHASGAGKAFLSQLSEEQVTSLLHRKGLHAYTHATLVSPLHLKDD
LAQTRKRGYSFDDEEHALGLRCVASCIYDEHREPFAALSISGPCSRITDD
RVTELGAMVIKAAKEVTLAYGGTR
>SC4337 idnR, L-idonate regulator (GalR/LacI family)
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVARETGERIAQIMEEINYI
PNRAPAMLLNAQSYTLGVLIPSFQNQLFADILAGIESVTSGHNYQTLIAN
YNYNRDSEEESVINLLSYNIDGIILSEKYHTLRTVKFLRSATLPIVELMD
IQGDRLDMEVGFDNRQAAFDMVSTMLDKRQRRKILYLGSKDDIRDEQRYH
GYCDAMTRRGLAPLRINPRAISSIHLGIQLMRDALAAHPDVDGVFCTNDD
IAMGALLWCRERQLAVPEQISIAGFHGLEMGRQMIPSLASVITPRFEIGR
RAAQMLLNKIKNNDLNHNTIDLGYQIYHGSTL
>SC3813 ilvY, positive regulator for ilvC (LysR family)
MDLRDLKTFLHLAESRHFGRSARAMHVSPSTLSRQIQRLEEDLGQPLFVR
DNRTVTLTEAGEELRVFAQQTLLQYQQLRHTLDQQGPSLSGELHIFCSVT
AAYSHLPPILDRFRAEHPSVEIKLTTGDAADAMEKVVTGEADLAIAGKPE
TLPGAVAFSMLENLAVVLIAPALPCPVRNQVSVDKPDWSTVPFIMADQGP
VRRRIELWFRRHKISNPQIYATVGGHEAMVSMVALGCGVALLPEVVLENS
PEPVRNRVMILERSDEKTPFELGVCAQKKRLHEPLIDAFWKILPN
>SC2831 invF, invasion protein
MLTTMLNTQEVLKEGERRKIRSPEAWFIQTCSAQKLHMSFSESRHNENCL
IQEGALLFCEQAVVAPVSGDLVFRPLKIEVLSKLLAFIDGAGLVDTTYAE
SDKWVLLSPEFRAIWQDRKRCEYWFLQQIITPSPAFNKVLALLRKSESYW
LVGYLLAQSTSGNTMRMLGEDYGVSYTHFRRLCSRALGGKAKSELRNWRM
AQSLLNSVEGHENITQLAVNHGYSSPSHFSSEIKELIGVSPRKLSNIIQL
ADK
>SC1838 kdgR, putative transcriptional repressor (IclR family)
MANADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMSKSTVYR
FLQTMKTLGYVAQEGESEKYSLTLKLFELGARALQNVDLIRSADIQMREL
SRLTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKV
LLAWRDRDEVKQILDGVEYKQSTGRTITSTEALLPLLDEVRAQGYGEDNE
EQEEGLRCIGVPVFDRFGVVIAGLSISFPTLRFSEERLQEYVAMLHAAAR
KISEQMGYNDYPF
>SC0722 kdpE, response regulator in two-component regulatory system with KdpD, regulates kdp operon encoding a high-affinity K translocating ATPase (OmpR family)
MTNVLIVEDEQAIRRFLRAALEGDGLRVYEAETLQRGLLEAATRKPDLII
LDLGLPDGDGIDFIRDLRQWSAIPVIVLSARSEESDKIAALDAGADDYLS
KPFGIGELQARLRVALRRHAASPCADPIVRFSGVTVDLAARLIHRGDEEI
HLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLR
QKLEQDPTRPRHFITETGIGYRFMP
>SC3620 lacI, putative transcriptional regulator
MMNNARINQPIFAGASDVKRTKSPRAPTLEDVARSAGLSPMTVSRALNSP
QLVRPKTVEKVMQAVRVTGYIPNALAGGLASRRSKLIAVVVPQINNNMFV
DTIQSLSDELARRGYHILLCVAGYTEQTEAELVATLLSRRPDGVVLTGIH
HTIELKKVILNAAIPVVEIWDLTPTPLDMLVGFSHEKVGQATGEYLLSKG
YRRPGLLWTADRRAAQRKQGLCSVLQRHAIHAVPQVGAPLPASLSLGRSG
LSQLFDEGTFDVIVCSSDTLAQGAMMEAESRGLRIPHDLAVIGFGDLDFA
ASNRPSITTVSVDRRAIGQRAATLLADRIEQKPCAEAIVDIGFHLIERES
A
>SC3693 levR, putative NtrC family transcriptional regulators, ATPase domain
MRRIEIVLGELERLTRGLCLADLAQETAFTAEAIGFNLGLARNSVSKDLN
QLWNDGLAIKSRGRPVYFLHRQALETLLGRQLEEPGREVRSVADVLPHEE
HYAPDDPFTSLIGYDRSLRDAVEKGRAAVLYPHGLHVLLTGPSGVGKTFF
VELMHRFACEQASGAIPPLVYFNCAEYAHNPELLSSHLFGHRQGAFTGAN
EHKTGLVEQADGGYLLLDEVHRLSYEGQEKLFSILDKGEYRPLGVSSQPR
SISVRLICATTEPVGSALLRTFQRRIQVCIDLPGIRQRSVEEQIELIVGF
LQRESRKIERTVSIDKPLLLWLLNKPLEGNIGQLKSDIQFLCAQAWASGM
TEHNDTLQLDKRLAEMSVNPTPEQRLLVDTLFDGKARLNIDARTLPALKT
SLATGAEIEESDLFYSFLTREYVNLRNSNVPPAETLAILKNKLSSIFEYG
LYSRDSVAHPPRYGDQIEERVTLLIGCVEQVLGFSLPENLVNPLRKHFLA
LIGYVQRGLIPQLYSSSLILDRCKDEYDNATLLCRKINELLHIQCPATEV
VWLCLFLKECRHYRQRIDASPGCGVILIAHGATTATSQAQYVNRVLEREL
FSAIDMPFEQSVHDTLETLTQMIQTRQYRRLILLVDIGSLIHFGSTISKL
FQIDVLLMPNITLTSLLEVGLDLSYETSDLPQLTALLQSKNIPCQLCTPQ
QENGGKVLVISCITGMGTAEKIKKVLEESFGELMSQDTRMVILDYNEVRS
LERVQQALNASERLAGIVGTFQPGLPDIPFISLEELFSEQGPELVLSLLT
PDLSNAERRLEMERSAMRFISALTMESIINHISVLNPQRILKEMEGVFNH
LTSSLSLKPSRQVTLRFLIHCCCMVERIVINRKPLQMALESQPNLDARAF
SVIKSAFLPIEDAYAIRLSDAEYFYIYELLYS
>SC4116 lexA, SOS response regulator, transcriptional repressor (LexA family)
MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKAL
ARKGVLEIVSGASRGIRLLQEEEDGLPLVGRVAAGEPLLAQQHIEGHYQV
DPSLFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARID
DEVTVKRLKKQGNKVELLPENSEFTPIVVDLREQSFTIEGLAVGVIRNGE
WL
>SC4303 licR, putative phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)
MLQNETLPQDELAQRLSVSTRTVRADIAALNMLLTPHGAQFTLSRGNGYQ
LKIDDPARYQSLQTQQSPALARGPRTSQERIHYLLARFLTSAFSLKLEDL
ADEWFVSRATLQNDMADVREHLLRYHLTLETRPRHGMKLFGGEMAIRACL
TDLLWTLAQQESSHPLIVSTTLNTEVSQRLQSLLPDIFSHCQIRLTDESE
LFLRLYCAVAVRRIREGYPLSECVAEEVDEKVRHAAHEIAELLQQLADKP
LSEPEVSWLKVHIAARQVQEIAPSAINADDEEALVRYILNFINTQYNYNL
LNDKQLHADLLTHIKTMITRVRYQIMIPNPLLENIKQHYPMAWDMTLAAI
SSWGKYTPYTISENEIGFLVLHIGVGLERSYNIGYQRQPQVLLVCDAGNA
MVRMIEAVLARKYPQIEIARTLTLRDYEARDSIVEDFVISTARIGEKDKP
VIMIAPFPTDYQLEQIGKLVLVDRTRPWMLDKYFDASHFRIVEGEIDQQT
LFKTLCDQLHEEGFVDAAFLDSVIEREAIVSTLLGDGIALPHALGLLAKK
TVVYTVLAPQGIAWGDETAHVIFLLAISKSEYEEAMAIYDIFVTFLRERA
MTRHDAPLRMSEFYAI
>SC3617 lldR, putative transcriptional regulator for lct operon (GntR family)
MIVMPKRLSDEIASRVRALIEEQNLEAGMKLPAERQLALQLGVSRNSLRE
ALAKLVSEGVLVSRRGGGTFVRWQHETWSEQNIVQPLKMLMANDPDYSFD
ILEARHAIEASTAWHAAMRATAADKEKIRLCFDATLSEDPDLASQADVRF
HLAIAEASHNVVLLQTMRGFFDVLQSSVKQSRQRMYLVPPVFSKLTEQHQ
AVMDAILDGNAEGARKAMMAHLSFVHTTIKRFDED
>SC2330 lrhA, NADH dehydrogenase transcriptional repressor (LysR family)
MINANRPIINLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQQMQRLE
QLVGKELFARHGRNKLLTEHGIQLLGYARKILRFNDEACSSLMFSNLQGV
LTIGASDESADTILPFLLSRISSVYPKLALDVRVKRNAYMVDMVKSQEVD
LVVTTNQPHSLDCLNLRTSPTHWYCAAEYVLQRGEPVPLVLLDDPSPFRD
MVLETLNAAGIPWRLAYVASTLPAVRAAVKAGLGVTARPVEMMSPDLRVL
GAADGLPPLPDTEYLLCRDPNSQNELAMVIFHAMESYQNPWHYNQFSAEG
GDDPLMVEGGFE
>SC0913 lrp, regulator for lrp regulon and high-affinity branched-chain amino acid transport system; mediator of of leucine response (AsnC family)
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVR
RLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNAAVQKL
EEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVM
EEVKQSNRLVIKTR
>SC0136 lysR, putative lysR-family transcriptional regulator
MKAGLIMRHDVMSILHAFCMIAENHSFTRAAAQLHISTSALSQNMRQLED
ELGVKLLNRTTRRVGLTEAGHAFLASIRPALNHIDEAMEHARQSRDIPGG
TLRLTVPRTAATLLLQPNLAGFMRDYPDIRLDIDVNDGFVDLINERFDAG
IRFGDAVQLDMNVVPLGDVLRPAIVASPAYLARFGTPLHPQELINHRCLC
HRFTRESGLYRWEFVHGAQRLEITPEAALMVNDKALRLSAARDGAGLTYV
FEQDVHEDLQDGRLCSVLEEWLPAADRFYLYYPGRAHMAPKLRVFIDYFC
HKAILPSQQSHHR
>SC2953 lysR, positive transcriptional regulator (LysR family)
MAAVNLRHIEIFHAVMTAGNLTEAARLLHTSQPTVSRELARFEKVLGLTL
FERTRGRLHPTVQGLRLFEEVQRSWYGLDRIVSAAESLREFRQGELSIAC
LPVFSQSFLPPLLPPFLARYPDVSLNIVPQESPLLEEWLSAQRHDLGLTE
TLHAPAGTTRTELLTLNEVCVLPCDHPLAAKTVLTPDDFQGENFISLSRL
DSYRQLLDTLFAEHQVKRRMVVETHSAASVCAMVRAGAGVSIVNPLTALD
YAANGVTVRRFSIDVPFTVSLIRPLHRPASALVDAFSKHLQTHLSRLVEP
LEVILGPMTKA
>SC1482 malI, Maltose regulon regulatory protein malI
MVFASRASYLDDADTVRPDNMQAAQLLTEYLIRQGHQRIAWLGGQSASLT
RAERVGGYCATLLKYGLPFHSEWVVECASSQKQAAESITALLRYNPTISA
VVCYNETIAMGAWFGLLRAGRQSGESGVDRYFELQVSLAAFADVAENALD
DLPIIWASTPAREIGYTLAERILQRIAHDEHHVRSQTIAARLVTQK
>SC3447 malT, transcriptional activator of the mal genes, binds inducer (maltotriose) and ATP (LysR familiy)
MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALVTSPAGYGKTTLVS
QWAAGKNELGWYSLDEGDNQQERFASYLIAAIQQATGGHCSTSEAMAQKR
QYASLTSLFAQLFIELAQWHRPLYLVIDDYHLITNPVIHDAMRFFLRHQP
ENFTLVVLSRNLPQLGIANLRVRDQLLEIGSQQLAFNHQEAKQFFDRRLS
SPIEAAESSRMCDDVAGWATALQLIALSARQNHTSAHHSARRLAGINASH
LSDYLVDEVLDNVDVSTRHFLLKSAILRSMNDALIVRVTGEENGQMRLEE
IERQGLFLQRMDDTGEWFSYHPSFGSFLRQRCQWELAAELSEIHRAAAES
WMEQGFPSEAIHHALAAGDAQMLRDILLNHAWGLFNHSELALLEESLKAL
PWESLLENPRLVLLQAWLMQSQHRYSEVNTLLARAEQEIKGVMDGTLHAE
FNALRAQVAINDGNPEEAERLAKLALDELPLAWFYSRIVATSVHGEVLHC
KGDLSQSLSLMQQTEQMARHHDVWHYALWSLIQQSEIQFAQGFLQAAWET
QERAFQLIKEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIAVL
STFQPQQQLQCLTLLVQCSLARGDLDNARSQLNRLENLLGNGRYHCDWIS
NADKVRVIYWQLTGDKKSAANWLRHTPKPAFANNHFLQGQWRNIARAQIL
LGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQSGRKNDAQRV
LLDALQLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPEMEQHRAQRILR
EINQHHRHKFAHFDEGFVERLLNHPDVPELIRTSPLTQREWQVLGLIYSG
YSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMMGYG
V
>SC1537 marA, transcriptional activator of defense systems (AraC/XylS family), multiple antibiotic resistance protein
MSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKET
GHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYF
DVPPHKYRITNMHGESRYMLPLNHGNY
>SC1538 marR, transcriptional repressor of marRAB operon, multiple antibiotic resistance protein
MKSTSDLFNEIIPLGRLIYMVNQKKDRLLNNYLSPLDITATQFKVLCSIR
CAGCITPVELKKVLSVDLGALTRMLDRLLCKGWIERLPNPNDKRGVLVKL
TPDGAAICEQCHQRPGQDLHQELTKNLTADEVATLEYLLKKILP
>SC3680 marT, putative transcriptional regulatory protein
MSCYAATASDYTQWCLLTLSNYVMFWHGNNAMLWIINDNIEFNPEMNRLA
SLSRPDLNIILTTPASRCLRLLLENAPSVVSQQTFFQKVWEEDGMVVSAN
TLYQNISIIRRGLRTVGENEDTLIITVPRRGFQIEPGVSIMTIRKDFAQA
IEKKGETPPRMSGRWFKHYVPVLWMTGTFAVGILLGTISWQTVPDKDFYD
RYTLVETTQGCHFFSRNEDIESGSRFASYKSMILKTGMDCQKYPWVYFPS
SSRTPAVTALICQQPYKTRGDTGCVTLFFRGVTHG
>SC3394 mauR, putative ATPase component of ABC transporter with duplicated ATPase domain
MNLSITDDITFRKLTIFMMFVEKGNIARTAEALHTLEENVRGPLFVHKGL
FGTRPGIKITVAVGSTGTEGCVM
>SC4176 melR, regulator of melibiose operon (AraC/XylS family)
MGQNGVKSRVFGLIVRLRSTISTDSVSGFPVSSRLKGHNSDNSGNGVTMS
TQAISLLPPDPHMCNGDEKQTRSPLSLYSEYQRLDVELRPPHRMASSHWH
GQVEVNVPFDGDVEYLINNEVVQIKQGHITLFWACTPHQLTRPGNCRQMA
IFSLPMHLFLSWPLDRDLINHVTHGMVVKSLATQQLSIFEVLRWQQETSS
PNEQIRQLAIDEIGLMLKRFSLSGWQPILLNKTSRTHKNSVSRHAQFYVS
QMLGFIADNYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMR
INHVRALLSDTDKTILDVALTAGFRSSSRFYSTFSKFVGMSPQQYRKLSQ
QRRQTMPG
>SC3990 metJ, transcriptional repressor of all met genes but metF (MetJ family)
MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLR
HATNSELLCEAFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGIDP
ETWEY
>SC3863 metR, regulator for metE and metH (LysR family)
MIEIKHLKTLQALRNSGSLAAAAAVLHQTQSALSHQFSDLEQRLGFRLFV
RKSQPLRFTPQGEVLLQLANQVLPQISRALQACNEPQQTRLRIAIECHSC
IQWLTPALENFRASWPQVEMDFTSGVTFDPQPALQQGELDLVMTSDILPR
SGLHYSPMFDFEVRLVLAPDHPLASKTQITPEDLASETLLIYPVQRSRLD
VWRHFLQPAGISPLLKSVDNTLLLIQMVAARMGIAALPHWVVESVERQGL
VVTKTLGDGLWSRLYAAVRDGDQRQAVTEAFIRSTRDHACDHLPFVRSAE
RPIFDAPTAKPGSQPRL
>SC1166 mfd, transcription-repair coupling factor
MPEKQRYTLPTKAGDQRQLGELTGAACATLVAEIAERHAGPVVLIAPDMQ
NALRLHDEIRQFTDQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPS
MQRGVLIVPVNTLMQRVCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGY
RHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDFFDDEIDSLRLFDADTQ
RTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDAEHIYQQVSK
GTLPAGIEYWQPLFFSEPLPPLFSYFPANTLVVNTGSLETSAERFQADTL
ARFENRGVDPMRPLLPPEALWLRVDELFSELKRWPRLQLKTDHLPEKAAN
TNLGFQKLPDLAIQAQQKAPLDALRKFLESFSGPVIFSVESEGRREALGE
LLARIKIAPKRILRLDEAQDAGRYLMIGAAEHGFIDTQRNLALICESDLL
GERVARRRLDSRRTINPDTLIRNLAELHVGQPVVHLEHGVGRYAGMTTLE
AGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEESAPLHKLGGDAW
SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHK
QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAA
EGKIDILIGTHKLLQSDVKLRDLGLLIVDEEHRFGVRHKERIKAMRADVD
ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVRE
AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL
ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL
EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQ
QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKNENELEEIKVELIDRF
GLLPDPARNLLDIARLRQQAQKLGIRKLEGNEKGGTIEFAEKNHVDPAWL
IGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVRQFMQQLEENAIA
>SC1506 mlc, transcriptional repressor of ptsG and ptsHI, global repressor of carbohydrate metabolism (pts operon) (NagC/XylR family)
MVADSQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKI
VREMLEAHLVQELEIKEAGSRGRPAVGLMVETEAWHYLSIRISRGEIFLA
LRDLSSKLVVEECLALPLNEATPLLERIITHVDRFFTRHQQKLERLTSIA
ITLPGIIDTENGVVHRMPYYEDVKEMPLGDALERHTGVPVYIQHDISAWT
MAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQV
DPYGKRCYCGNHGCLETIASVDSVLELTQLRLNQSMSSMLHGQPLTVDSL
CQAAMQGDLLAKDIISGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADI
LFPTIADSIRQQALPAYSRNTVVESTQFTNQGTMAGAALVKDAMYNGSLL
IRLLQG
>SC0832 mntR, putative Mn-dependent transcriptional regulator
MGRRAGTPTTKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVELISDLII
EVGEARQVDMAARLGVSQPTVAKMLKRLASLGFIQMIPWRGVFLTPEGEK
LAQESRERHQIVENFLLVLGVSPEIARRDAEGMEHHVSQETLDAFLAFTQ
QHGTSAE
>SC3064 moaR, putative response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain
MSALSTTGHNDGITLHCLQSIAQLIPLSSAVFYRVNAYLKPEAYVLHNIS
NSTHQQYLEHFQPLDPLSPSRFGQQVITVATMTPGICARHRHYYHEFMLP
NHVCDMIEIFIRRGHHIIAGISLMRDIPFSSEERLRAQAVQPLLGLAIHD
SLQEDNDLASILTAKEREIVGMVCEGASNKLIARQLNISLSTVKTHLRNI
FAKTEVINRTELVSRTRMSSVQHSLNM
>SC2736 mocR, putative regulatory protein, gntR family
MPRYQHIARQLKTAIEQGELAPGTRLPSSRTWAQELGVSRATVENADGEL
VAQGWLERRGQAGTFVSNALRFETAPPIPAVFAGESPEPKPFQMGLPALD
LFPREKWARVMGRRLRTQTRFDLALGDVCGEAILRQAIVDYLRVSRSIEC
LPEQVFITSGYADSMRLILRTLSVPGDSMWVEDPGFPLIRPVITQEGITL
APIPVDADGLNVAAGMRDCPQGRFALVTPAHQSPLGVALSLTRRRQLLAW
AANVQAWIIEDDYDSEFRYHGKPLPPLKSLDAPQRVIYAGTFSKSLFPAL
RTAWLVGPIKQIEHFRQQVSLMPCSVPLLWQHTLADFIRDGHFWRHLKKM
RQHYAQRRLWIEEALAEQGFVVTLQKGGIQLVIEVEGDDKAQVAKANQAG
LAVQALSRWRVVSSGKGGILLSFTNITSAGMAKQVAWQLRQAIQ
>SC3611 mtlR, repressor for mtl
MTQNPAQVSLRPNNRLSDMQAIMEQTQAFENRVLERLNAGKTVRSFLITA
VELLTEAVNILVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGL
GVLSRTEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVMALPP
PPHFDTSDAALYAMQIQRYQQAVRSTMILSLTELISKISLKKAFQK
>SC0712 nacR, putative transcriptional regulator, LysR family
MELRQLRYFVRIIETGSMGSAAQDLDIGVSALSQQMSRLENELAIRLLQS
TSRGVTPTNAGLAFYSQAQLALRHADDAILAAREARLSGHVSVGMAPSTA
SILGIPFIHAMQENYADVRLHVVESLSGNLERMINTRQIDLAVVFQKDKI
LRWSARPILEEQLFLIGSHALLTALPDNPITPKQLAGIPLIMPSQGHGLR
GRLDAVCQEHALNVEIVAEIDGLALLMRAVRDGLGATLQPGAAISHLDND
ALRVIGVHNPVLSRPNFLVSLSDDELTPAGLAARVVLTKVMRQLVDAGEW
PGATLYAY
>SC0703 nagC, transcriptional repressor of nag (N-acetylglucosamine) operon (NagC/XylR family)
MTPGGQAQIGNVDLVKQLNSAAVYRLIDQHGPISRIQIAEQSQLAPASVT
KITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDTTL
TLYDLSSKVVAEEHYPLPERTQETLEHALLNTIAVFIDSCQRKISELIAI
SVILPGLVDPESGVIRYMPHIQVENWGLVEALEKRFHVTCFVGHDIRSLA
LAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHIQV
EPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQSRVPLDDCTIKTI
CKAANRGDSLASEVIEHVGRHLGKTIAIAINLFNPQKIVIAGEIIEADKV
LLPAIESCINTQALKAFRKNLPVVRSTLDHRSAIGAFALVKRAMLNGTLL
QRLLES
>SC3659 nahR, putative transcriptional regulator, LysR family
MNLLQMDMNLLKVLYVLLETSSTGKTAQKLALSPSAVSHALMRLRDALND
PLFRREGNRQIATPYAQALRDKLAPVFVSLNEELFGDKENGSRCFRVVLP
PALNALLTPVLAEKGHLHQAVIECLPFARRPWRDELLDSSVDLVLAIGDH
QKQVSALHYERVGTTRLIAVYGAPLRSRLENAAALNFADLQHYQHIYCLP
WTKENNELDRQQARAGFERPLAFVCHDYSQLAPAVQSAPLMAIVPRPWYE
NLSDKRGLFVLPLTGEQAEGAIFMQYRASTVEWKRRLIDAIRRKLKTYYG
>SC3274 nanK, putative ManNAc kinase
MTTLAIDIGGTKLAAALIDNNLRISQCRELPTPASKTPDALREALKALVE
PLRAEARQVAIASTGIIQEGMLLALNPHNLGGLLHFPLVQTLETIAGLPT
LAVNDAQAAAWAEYHALPDDIRDMVFITVSTGVGGGVVCDGKLLTGKGGL
AGHLGHTLADPHGPVCGCGRVGCVEAIASGRGMAAAARDDLSGCDAKTLF
IRAGEGHQQARHLVSQSAQVIARMIADVKAATDCQCVVIGGSVGLAEGYL
EQVRAFLMQEPAPYHVALSAARYRHDAGLLGAALLAQGDTL
>SC1761 narL, response regulator in two-component regulatory system with NarX (or NarQ), regulates anaerobic respiration and fermentation (LuxR/UhpA familiy)
MNNQEPATILLIDDHPMLRTGVKQLVSMAPDISVVGEASNGEQGIDLAES
LDPDLILLDLNMPGMNGLETLDKLREKALSGRIVVFSVSNHEEDVVTALK
RGADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATTD
RDVTQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKL
KSRVEAAVWVHQERIF
>SC2251 narP, response regulator in two-component regulatory system with NarQ (or NarX)
MPEVTPFQVLIVDDHPLMRRGIRQLLELDPAFHVVAEAGDGASAIDLANR
IEPDLILLDLNMKGLSGLDTLNALRRDGVTAQIIILTVSDSASDIYALID
AGADGYLLKDSDPEVLLEAIRKGANGGKVFSDRVNEYLRERERFGAQEDP
FSILTERELDVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRS
RVAATILFLQTRGMQ
>SC2376 ner, putatiave helix-turn-helix regulatory protein
MEPKSQDWHRADIKSALEKRGITLRDLSRQAGLSPDSLRNVFTRSWPRAE
RIIADALGITPQEIWPSRYGDMQIKNDADIAE
>SC0035 nhaR, transcriptional activator of nhaA (LysR family)
MSMSHINYNHLYYFWHVYKEGSVVGAAEALFLTPQTITGQIKALEERLQG
KLFKRKGRGLEPSELGELVFRYADKMFTLSQEMLDIVNYRKESNLLFDVG
VADALSKRLVSSVLDAAVVVDEPIHLRCFESTHEMLLEQLSQHKLDMIIS
DCPIDSTQQEGLFSVKIGECSVSFWCTNPLPEKAFPACLEERRLLVPGRR
SMLGRKLLNWFNSQGLQVEILGEFDDAALMKAFGATHDAIFVAPSLYSLD
FYADESVIEIGRVENVMEEYHAIFAERMIQHPAVQRICNADYSALFKLQ
>SC3513 nikR, nickel-responsive transcriptional regulator
MRRRAIPKGLSQMQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRG
ALAQEATQEHGTQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHV
HINHDDCLEIAVLKGDMGDVQHFADDVIAQRGVRHGHLQCLPKED
>SC3244 nlp, regulatory factor of maltose metabolism
MESKLIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALTRPWPKGE
LIIAKALGTEPWVIWPSRYHDPRTHEFIDRTRLMRARNKDKQNVE
>SC2278 ntrA, putative regulatory protein, gntR family
MKNRLKRDFSHISIEIPKSITQVIKEKIREMIIHGDFDLGQAISENELSN
ILMVSKTPIREAFIWLSYNENLVNIIPRSGTFVFSVTDEDINDLIKMRVI
LEQGAIREAMEKNANNVIVELSNILSKSAKINAERDTQAYLKLDHDFHYV
FVKYADNKYISQAHLLISARLLAIRYRLDFTAEYITSSNRGHATILDMLK
NNNVEGVCNFITHHIGSGFTERARKLLALKA
>SC3228 nusA, transcription pausing; L factor
MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEID
RKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESV
TFDRITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNI
SLEIKSEGMAGNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQL
FVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRI
DPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVAS
IVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQ
AKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEI
DGLDEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMA
FKLAARGVCTLEDLADQGIDDLADIEGLTDEKAGELIMAARNICWFGDEA
>SC0459 nusB, transcription termination; L factor
MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVDVLYFRE
LLSGVATNSAYLDGLMKPYLSRLLEELGQVEKAVLRIALFELSKRSDVPY
KVAINEAIELAKTFGAEDSHKFVNGVLDKAAPVIRPNKK
>SC4032 nusG, component in transcription antitermination
MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVV
EIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRP
APISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEE
VDYEKSRLKVSVSIFGRATPVELDFSQVEKA
>SC3434 ompR, Transcriptional regulatory protein ompR
MGVQTMQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLT
RESFHLMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGL
EIGADDYIPKPFNPRELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKL
NLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYS
AMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDGSKA
>SC4014 oxyR, regulatory protein sensor for oxidative stress, regulates intracellular hydrogen peroxide (LysR family)
MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELGVMLLER
TSRKVLFTQAGLLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPT
IGPYLLPLIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDCAILALVK
ESEAFIEVPLFDEPMMLAIYEDHPWANRDRVPMSDLAGEKLLMLEDGHCL
RDQAMGFCFEAGADEDTHFRATSLETLRNMVAAGSGITLLPALAVPQERK
RDGVVYLPCIKPEPRRTVGLVYRPGSPLRSRYEQLAEAIRGAMDGHFDKA
LKQAI
>SC0150 pdhR, transcriptional repressor for pyruvate dehydrogenase complex (GntR family)
MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPS
LREAIQRLEAKGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQFDL
LETRHALEGIAAYYAALRSTDEDKDRIRELHHAIELAQESGDLDAESEAV
LQYQIAVTEAAHNVVLLHLLRCMEPMLAQNVRQNFELLYARREMLPLVST
HRTRIFEAIMAGKPEEAREASHRHLAFIEEIMLDRSREESRRERALRRLE
QRKN
>SC2049 pduD, Propanediol utilization: dehydratase, medium subunit
MEINEKLLRQIIEDVLRDMKGSDKPVSFNAPAASTAPQTAAPAGDGFLTE
VGEARQGTQQDEVIIAVGPAFGLAQTVNIVGLPHKSILREVIAGIEEEGI
RARVIRCFKSSDVAFVAVEGNRLSGSGISIGIQSKGTTVIHQQGLPPLSN
LELFPQAPLLTLETYRQIGKNAARYAKRESPQPVPTLNDQMARPKYQAKS
AILHIKETKYVVTGKNPQELRVAL
>SC4166 phnO, putative regulator in phn operon
MILMRRREDVMPVCELRHATTEDTDSVYALICELLKNELDYQAFRDGFAA
NLLDPNVHYRLALRNGEVVGMISLHMQFHLHHANWIGEIQELVVLPPMRG
QKIGSQLLAWAEEEARQAGAELTELSTNIKRRDAHRFYLREGYKQSHFRF
TKAL
>SC0471 phnR, 2-aminoethylphosphonate transport, repressor
MKSIPGDIPQYLLIKAQLQERIQSGALKSGDKLPSERELCAIFNTTRITI
RESLAQLESSGLIWRADRRGWFVTPERLWLDPTQNTNFHKLCREQGREPK
TALLSGVLTTVPVEVMESLQLQPFDQIYLLTRLRYADGRAVCYCENHCLP
ARVPELLQYDLNGSLTEVYESHYNLVYTSMHLSFYPTAMPAQAAQALGVM
EGRPALLLRRLNYDQHGRVLDLDIEYWRHDSLRIEVDTH
>SC0438 phoB, response regulator in two-component regulatory system with PhoR (or CreC), regulates pho regulon (OmpR family)
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLI
LLDWMLPGGSGLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGAD
DYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPGSHRVMTGD
SPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIR
RLRKALEHSGHDRMVQTVRGTGYRFSTRF
>SC1182 phoP, response regulator in two-component regulatory system with PhoQ, transcribes genes expressed under low Mg+ concentration (OmpR family)
MMRVLVVEDNALLRHHLKVQLQDSGHQVDATEDAREADYYLNEHLPDIAI
VDLGLPDEDGLSLIRRWRSSDISLPVLVLTAREGWQDKVEVLSSGADDYV
TKPFHIEEVMARMQALMRRNSGLASQVINIPPFQVDLSRRELSVNEEVIK
LTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRK
KIQAQYPHDVITTVRGQGYLFELR
>SC2044 pocR, Propanediol utilization: transcriptional regulation, AraC family
MISASALNSELINKIAQDFAQATGLAVVVVNIHGDEISELFNFTPFCQLM
RQHPQHSTRCRMSDRCGGLEASKSDQPCIYRCHAGLTDFSIPLVIAGHLV
GFVLCGQVRLSNDVELVNILNVDDRWQADPELLNEFRNVPEMDYSRVIAS
SDLLKLIVENCLKKQLNFVVIKDNPQQSEANKTTRGPTPHDSKMKKALRY
IDAHLSDDLRLEDVASHVYLSPYYFSKLFKKYQGIGFNAWVNRQRMVSAR
ELLCHSDWSIASIARNLGFSQTSYFCKVFRQTYQVTPQAYRQQINENSHP
PSL
>SC0408 prpR, regulator for prp operon (EBP family)
MTTAHSAPRDNSDKPVIWTVSVTRLFELFRDISLEFDHLATITPIQLGFE
KAVTYIRKKLATERCDAIIAAGSNGAYLKSRLSIPVILIKPSGFDVLQAL
AKAGKLTSSIGIVTYQESIPALLAFQKTFHLRLEQRSYVTEEDARGQINE
LKANGIEAVVGAGLITDLAEEAGMTAIFIYSAATVRQAFHDALDMTRLTR
RQRVDYSSGKGLQTRYELGDIRGQSPQMEQLRQTITLYARSRAAVLIQGE
TGTGKELAAQAIHQTFFHRQPHRQNKPSPPFVAVNCGAITESLLEAELFG
YEEGAFTGSRRGGRAGLFEIAHGGTLLLDEIGEMPLPLQTRLLRVLEEKA
VTRVGGHQPIPVDVRVISATHCDLDREIMQGRFRPDLFYRLSILRLTLPP
LRERQADILPLAESFLKQSLAAMEIPFTESIRHGLTQCQPLLLAWRWPGN
IRELRNMMERLALFLSVDPAPTLDRQFMRQLLPELMVNTAELTPSTVDAN
ALQDVLARFKGDKSAAARYLGISRTTLWRRLKAGAKDQSDN
>SC1683 pspA, phage shock protein; negative regulatory gene for the psp opreon
MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSNSARA
LAEKKQLSRRIEQATTQQTEWQEKAELALRKDKDDLARAALIEKQKLTDL
IATLEQEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAASSSR
DVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHRFGKQQSLDQQFANL
KADDEISEQLAQLKAKMKQDNQ
>SC1681 pspC, phage shock protein; regulatory gene, activates expression of psp operon with PspB
MGGINLNKKLWRMPQKGMVRGVCAGIADYLDVPVKLVRILVVLSIFFGLA
FFTVVAYIVLSFVLDPMPDNLAAGKPQPTSGELLDTVDRELAAGEKRLRE
MERYVTSDTFTLRSRFRQL
>SC1684 pspF, transcription activator
MAIFIMTEFKDNLLGEANRFLEVLEQVSRLAPLDKPVLIIGERGTGKELI
ANRLHYLSSRWQGPLISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGR
FERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLV
CATNADLPAMVKEGTFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAI
QMCRELRLPLFPGFTDRAKETLLHYAWPGNVRELKNVVERSVYRHGSSEH
PLDEIVIDPFQRHPAEPPAPALPAASATPDLPLKLREFQLQQEKALLQRS
LQQAKFNQKRAADLLALTYHQFRALLKKHQL
>SC2434 ptsJ, putative regulatory protein, gntR family
MIDGKTANEIFDSIRQHIIAGTLRAEDSLPPVRELASELKVNRNTVAAAY
KRLITAGLAQSLGRNGTVIKGSPSPVALEGGDPHTPLHDLSGGNPDPQRL
PDLSRYFARLSRTPHLYGDAPVSPKLHAWAARWLRDATPVAGEIDITSGA
IDGIERLLCAHLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDSEGMQ
PEKLERALNQGARAVILTPRAHNPTGCSLSARRAAALQNMLARYPQVVVI
IDDHFALLSSSPWQPVIAQTTQHWAVIRSVSKALGPDLRLAIVASDSATS
AKLRLRLNAGSQWVSHLLQDLVYACLTDPEYQHRLAQTRLFYAARQQKLA
RALQQYGIAISPGDGVNAWLPLDTHSQATAFTLAKSGWLVREGEAFGVSA
PSHGLRITLSTLNDSEINTLAADIHQALNR
>SC1449 purR, transcriptional repressor for pur regulon, glyA, glnB, prsA, speA (GalR/LacI family)
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAV
ARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNN
LEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLSMLEEYRHIPMVVMDWGEA
KADFTDTVIDNAFAGGYMAGRYLVERGHRDIGVIPGPLERNTGAGRLAGF
MKAMEEALINVPDNWIVQGDFEPESGYHAMQQILSQSHRPTAVFCGGDIM
AMGALCAADEMGLRVPQDVSVIGYDNVRNARYFTPALTTIHQPKDSLGET
AFNMLLDRIVNKREESQSIEVHPRLVERRSVADGPFRDYRR
>SC0612 ramA, putative regulatory protein
MTISAQVIDTIVEWIDDNLNQPLRIDDIARHAGYSKWHLQRLFMQYKGES
LGRYVRERKLKLAARDLLDTDQKVYDICLKYGFDSQQTFTRIFTRTFNLP
PGAYRKEKHGRTH
>SC3477 rbsK, putative transcriptional regulator of sugar metabolism
MKFERHHRILKELSISGVVKVSNLAKSLKVTKETIRSDLNELAGQGYLTR
CHGGAFITLDSLDNVAKNEIAYVLEKYESAQKIKKGLSAMKNNVCVIGSF
NVDIISYLPRLPSTGESLLADKFIFSPGGKGCNQALAASYADSDVHFITK
VGSDHFSDYAINFINSSKIHKSVIYQTKETQTGTATIMVNGDTGDNVIAI
YPGANMTISPDEITIQKEAIVHSDIVLVQLETNYEALQQTIRLAQKNDIP
VIINPAPYNDMVNTIIDNIDYITPNETEAGLLANMAVNDIESAKCAAKII
HQKGVKNTIITLGSKGSLAYDGTQFIYSPAFPAVVKNTAGAGDAFNGALA
SGLAKGKSLASALCYASAFASLAVETPNASDMPENDSVLHRIQGSHYKQT
ISTH
>SC3799 rbsR, transcriptional repressor for rbs operon (GalR/LacI family)
MKDVARLAGVSTSTVSHVINKDRFVSETITEKVEAAIKSLNYAPSALARS
LKLNQTRTIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQR
MNRNLETLMQKRVDGLLLLCTETHQPSREIMERYPSIPTVMMDWSPFDGE
GGSDLIQDNSLLGGDLATQHLIDKGFTRIACITGPLDKTPARLRLEGYRA
AMKRAGLAIPQGYEITGDFEFGGGFDAMQALLAHQQRPQAVFTGNDAMAV
GAYQALYQAGLRIPQDMAVIGYDDIELARYMTPPLTTIHQPKDELGELAI
DVLIHRMAQPALQQQRLQLTPVLTVRGSV
>SC1403 rbsk, putative regulatory protein, deoR family
MFKEERRHAIINLLIKDNSVSVSKLSDLYKVSQETIRSDLRYFQKSGMLQ
RCYGGGILNRDALSKLITENKIDISSTIATPIHQDAKLRRENTKKAGKVC
VLGSFNIDVSATVPWFPQSGESILASQFGFYPGGKGANQALAANNAGAAA
HFIFKVGKDQFSAFAMNHIIQSGIASYSAYQTDKAPTGSALIYVSAVDGD
NIIAIYPGANMMLTTQEINEQHRYIAESDVMLMQLETNIEALTEFIRLGK
QENKMIMLNPAPYTKQVTHLLSDIDIITPNETEASFLSGVTITDINDAKK
AGNIILQSGVKKVIITLGARGSLLCEHARTLYIPAWSAVVKDAAGAGDAF
NGALAAALARQADMVAAIQYASAFASLAVEQVGASSMPQHLQVLHRMRTQ
SNKVIHIN
>SC1987 rcsA, positive transcriptional regulator of capsular/exo-polysaccharide synthesis (LuxR/UhpA family)
MSTIIMDLCSYTRLGLSGYLVSRGVKKREINDIETVDELAIACGAHQPSV
VFINEDCFIHTPSDSQQIKQIINQHPDTLFIVFMAIANVHFDEYLLVRKN
LLISSKSIKPDSLDTLLGDILKKESGISGTINLPTLSLSRTESSMLRMWM
EGQGTIQISDRMNIKAKTVSSHKGNIKRKIKTHNKQVIYHVVRLTDNVTN
GIFVNMR
>SC2273 rcsB, response regulator (positive) in two-component regulatory system with RcsC (LuxR/UhpA familiy)
MTPTSKACCSKVAQYMNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEF
EDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIV
LTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKFTPESVS
RLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQ
KKSAMMKLGVENDIALLNYLSSVTLSPTDKE
>SC3668 recG, DNA helicase, resolution of Holliday junctions, branch migration
MSGRLLDAVPLNSLTGVGAAQSSKLAKIGLHTVQDLLLHLPLRYEDRTHL
YPIGELLPGIYATVEGEVLNCNITFGGRRMMTCQISDGSGILTMRFFNFN
AAMKNSLATGRRVLAYGEAKRGKYGTEMIHPEYRLQGDLSTPELQETLTP
VYPTTEGVKQATLRKLTDQALELLDTCAIAELLPPELAQGMMSLPEALRT
LHRPPPMLQLADLETGKHPAQRRLILEELLAHNLSMLALRAGAQRYHAQP
LSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGDVGS
GKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGW
LAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQH
RFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDE
LPPGRTPVTTVAIPDTRRHEIIDRVRNACTTEGRQAYWVCTLIEESDLLE
AQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQAFKQGELHLLVAT
TVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVVSHCVLLYKS
PLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVAD
LLRDQAIIPEVQRIARHIHERYPQQAQALIERWMPETERYSNA
>SC2896 relA, (p)ppGpp synthetase I (GTP pyrophosphokinase)
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHP
DADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVG
KSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVV
IKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELED
YCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVY
GRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHY
RHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELG
VAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQ
VFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVP
FTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQD
RDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGD
IRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVE
GVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPE
RIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASR
SDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>SC3875 rfaH, transcriptional activator affecting biosynthesis of lipopolysaccharide core, F pilin, and haemolysin
MQSWYLLYCKRGQLQRAQEHLERQAVSCLTPMITLEKMVRGKRTSVSEPL
FPNYLFVEFDPEVIHTTTINATRGVSHFVRFGAHPAIVPSSVIHQLSIYK
PEGVVDPETPYPGDSVIITEGAFEGLKAIFTEPDGETRSMLLLNLLNKEV
KQSVKNTGFRKI
>SC3939 rhaR, positive regulator for rhaRS operon (AraC/XylS familiy)
MANQLILLKKDFFTDEQQAVTVADRYPQDIFAEHTHEFCELVMVWRGNGL
HVLNERPYRITRGDLFYIRAEDQHSYTSVNDLVLQNIIYCPERLKLNVNW
QAMIPGFQGAQWHPHWRLGSMGMNQARQVINQLEHESNGRDPLANEMAEL
LFGQLVMTLKRHRYATDDLPATSRETLLDKLITALANSLECPFALDAFCQ
QEQCSERVLRQQFRAQTGMTINQYLRQVRICHAQYLLQHSPLMVSEISMQ
CGFEDSNYFSVVFTRETGMTPSQWRHLSNQSD
>SC3938 rhaS, positive regulator for rhaBAD operon (AraC/XylS family)
MTVLHSVDFFPSGKAPVAIEPRLPQAAFPEHHHDFHEIVIVEHGTGIHVF
NGQPYTISGGTVCFVRDHDRHLYEHTDNLCLTNVLWRSPDAFQFLAGLDQ
LLPQEQDGYYPSHWRVNQSVLQQVRQLVGLMERAGDGMDAPAVANREILF
MQLLVLLRRSSLMEGATKNDAKLNQLMAWLEDHFAEEVCWEAVAEQFSLS
LRTLHRQLKQHTGLTPQRYLNRLRLIKARHLLRHSDHSVTEIAYRCGFGD
SNHFSTLFRREFNWSPRDIRQGRDAIIQ
>SC3820 rhlB, putative helicase
MSKTHLTEQKFSDFALHPQVVEALEKKGFYNCTPIQALALPLTLAGRDVA
GQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQI
HADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAK
QNHINLGAIQVVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLNMLFSAT
LSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSNEEKMRLLQTL
IEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILD
EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRA
GASGHSISLACEEYALNLPAIESYIGHSIPVSKYNPEALMNDLPKPLRLT
RSRPGNGPRRAGAPRNRRRSG
>SC0817 rhlE, putative ATP-dependent RNA helicase
MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTG
KTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSK
YLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQI
EILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEK
LLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMIGQGNWQQVLV
FTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVC
VDEHKLLRDIEKLLKKESPRITTPGYEPDPSIKAEPIQNGRQQRGGGGRG
RGQNQGGAGRSQQPRRQDSGAAKAKPKPRTGEGKPAGDKARPPRRPRRIT
PAQ
>SC3822 rho, transcription termination factor Rho; polarity suppressor
MDDPAIPFTTLSSRFTPSLRTHTIMNLTELKNTPVSELITLGESMGLENL
ARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYLAGP
DDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVNYDKPEN
ARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLI
VAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGE
VVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNT
VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSK
MDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEE
LQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFEMMKRS
>SC1696 rnb, RNase II, mRNA degradation
MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSYFIPPPQ
MKKVMHGDRIVAVIHTEKERESAEPEELIEPFLTRFVGKVQGKNDRLSIV
PDHPLLKDAIPCRAARGVQHEFKEGDWAVAEMRRHPLKGDRSFYADLTQY
ITFADDHFVPWWVTLARHNLEKEAPNGVATEMLDEGLERQDLTALNFVTI
DSASTEDMDDALYAEELADGRLQLTVAIADPTAWIAEGSKLDNTAKIRAF
TNYLPGFNIPMLPRELSDDLCSLRANEVRPALACRMIIAADGTIDDDIAF
FAATIESKAKLAYDNVSDWLENNGTWQPDNEGIAQQIRLLHRICLSRSEW
RHHHALVFKDRPDYRFVLGEKGEVLDIVAEPRRIANRIVEESMIAANLCA
ARVLRDKLGFGIYNVHTGFDPANADALAALLKTHGLHVDAEEVLTLEGFC
KLRRELDAQPSGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIR
KYGDMINHRLLKAVIKGEAIARPQEDITQQMAERRRLNRMAERDVGDWLY
ARFLNDKAGTNTRFAAEIIDVSRGGMRVRLVDNGAIAFIPAPFLHAVRDA
LVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETRSIIARPAA
>SC2576 rnc, RNase III, ds RNA
MYQVCFVCWIVDAFIYWYRMNPIVINRLQRKLGYTFNHQELLQQALTHRS
ASSKHNERLEFLGDSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNTL
AELAREFDLGECLRLGPGELKSGGFRRESILADTMEALIGGVFLDSNIQT
VEQLILNWYKTRLDEISPGDKQKDPKTRLQEYLQGRHLPLPSYLVVQVRG
EAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQVLKKLELE
>SC0646 rnk, regulator of nucleoside diphosphate kinase
MSRPTIIINDLDAERIDRLLEQPAYADLPIADALNAELDRAQMCSPQEMP
NDVVTMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLG
LRVGDTIHWELPGGTSTHLEVLELEYQPEAAGDFLR
>SC4431 rob, transcriptional regulator (AraC/XylS family)
MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAI
GAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFSQTP
ALYRRSSEWSAFGIRPPLRLGEFTVPEHQFVTLEDTPLLGVTQSYSCSLE
QISDFRHEMRVQFWHDFLGHSPTIPPVLYGLNETRPSMEKDDEQEVFYTT
ALPQEQADGYVQSAHPVLLQGGEYVMFTYEGLGTGVQDFILTVYGTCMPM
LNLTRRKGQDIERYYPSEDTKTGDRPINLRCEFLIPIRR
>SC2363 rocR, putative regulatory protein
MASTNQELASALRMFSRFFDLIHQPLAVINERGEYVYYNQESADLDGYSI
ERAMGKHMLDVYPGMKETQSTMLSSLKKGVEYIGHYQIYYNARGQAVDYQ
HTTAPLYASDGGMVGVIEIGRNMSGVRRLQEQVVELNQLLYADHHEKHHA
IITENPEMLSNIAKAKRLAASNIPVTIVGETGTGKELFSRLIHQCSKRAN
KPFIALNCGALPPTLIESTLFDTVRGAYTGAENSQGYLELANGGTLFLDE
LNAMPIEMQSKLLRFLQDKTFWRLGGQQQLHSDVRIVAAMNEAPVKLIQQ
ERLRADLFYRLSVGMLTLPPLRARPEDIPLLANYFFDKYRNDVPQDIHGL
SETARADLLNHAWPGNVRMLENAIVRSMIMQEKDGLLKHIIFEQDELNLG
VPETAPENPLPSSPDPQYEGSLEVRVANYERHLIETALDTHQGNIAAAAR
SLNVSRTTLQYKVQKYAIRFGVVRN
>SC0237 rof, modulator of Rho-dependent transcription termination
MSMNETYQPINCDDYDSLELACMHHLILMLTLKDGEVLQAKANDLILRKN
VEYLLAEVSGESCELRLDKIASFSHPEIGTVVVSES
>SC1196 rpc, regulatory protein
MNIGNRVRQLRRAKNMKIAELAEAIGVDAANISRLETGKQKQFTEQTLSR
LADCLGVDIAELFTSDSKGNTVCKHSDMRKDSANVKDLFRIEILDVSASA
GNGLIQGGDVIDVIHAIEYNKDKALAMFGGRPAAELKVINVRGDSMAPTI
EPGDLIFVDISINQFDGDGIYVFGFDDKIYVKRLQMIPDKLLVISDNTNY
REWSITKDNECRFGVFGKVLISQSAVTQTTQLIESVDKATIMVAFFLTQN
CTYRNFILA
>SC3530 rpiR, Protein rpiR
MHSRLNGNEVFLLAKTPAPELGKKERAIARFIHDNPQTLSNMSITDIAHY
LKVSVSSITKVSKKLGFTGFHDLKLSISKNINNNEDTVDIPVIPDSEGFI
EKIFESTLLNSILALQEALNVIDCSIIKSVAWLFIHKNAEAKIFIAGCGG
SASICDDFNHKLLKIGIFSTVFSDSHKQLMSASLMRQGDILLAVSHSGQT
SDIIQMVNIANERGAETICLTNYPNSPLSLICRHSIISAVKNNPITGENA
TTRIVHLNILDAIFTIIASKTSEITKNSLLSTRNAVISKRTVS
>SC3350 rpoA, DNA-directed RNA polymerase alpha chain
MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSS
MPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVIL
TLNKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGR
GYVPASTRIHSEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDK
LVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQPEVKEEKPEFD
PILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLEDWPPASIADE
>SC4037 rpoB, RNA polymerase, beta subunit
MIATGIAESIHFPVNKIVLHKLSPAGQMGRLVSELRNPMVYSYTEKKRIR
KDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQSY
SGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEG
TVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKG
KTHSSGKVLYNARIIPYRGSWLDFEFDLKDNLFVRIDRRRKLPATIILRA
LNYTTEQILDLFFEKVVFEIRDNKLQMELIPERLRGETASFDIEANGKVY
VEKGRRITARHIRQLEKDDIKHIEVPVEYIAGKVVSKDYVDESTGELICA
ANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETVRVDPTNDRLSA
LVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLRD
EIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAEN
QFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLS
QFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIE
TPEGPNIGLINSLSVYAQTNEYGFLETPYRRVVDGVVTDEIHYLSAIEEG
NYVIAQANSNLDDEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVS
VGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDS
GVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQN
TCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNF
EDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPNVGEAAL
SKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASD
VKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSE
ELQILEAGLFSRIRAVLVSGGVEAEKLDKLPRDRWLELGLTDEEKQNQLE
QLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQP
GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQI
LETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLS
TFSDDEVLRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDLPTSGQITL
FDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK
AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGN
HQMEPGMPESFNVLLKEIRSLGINIELEDE
>SC4038 rpoC, RNA polymerase, beta prime subunit
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFK
PERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRE
RMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGG
MTNLERQQILTEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECET
LREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPPDLR
PLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS
GRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKM
VEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH
PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPII
VPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAGLASLHARVKV
RITEYEKDENGEFVAHTSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKK
HEIISEAEAEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDN
LQTETVINRDGQEEQQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKP
DGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRL
VDVAQDLVVTEDDCGTHEGILMTPVIEGGDVKEPLRDRVLGRVTAEDVLK
PGTADILVPRNTLLHEQWCDLLEANSVDAVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSI
QVKNKGSIKLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYG
AVMAKGDGEQVAGGETVANWDPHTMPVITEVSGFIRFTDMIDGQTITRQT
DELTGLSSLVVLDSAERTTGGKDLRPALKIVDAQGNDVLIPGTDMPAQYF
LPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRP
KEPAILAEIAGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKIND
KHIEVIVRQMLRKATIESAGSSDFLEGEQVEYSRVKIANRELEANGKVGA
TFSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN
VIVGRLIPAGTGYAYHQDRMRRRAAGEQPATPQVTAEDASASLAELLNAG
LGGSDNE
>SC3158 rpoD, sigma D (sigma 70) factor of RNA polymerase, major sigma factor during exponential growth
MPHIDREAPDSRSERQRPKYKYALALNVDSYTVDTNQTNKCGYRLMEQNP
QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQV
MEEAPDADDLLLAENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMR
EMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEA
EEARLSDLITGFVDPNAEEEMAPTATHVGSELSQEDLDDDEDEEDGDDDA
ADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHAAAQKEILKLSEV
FKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITL
FTGNETSETWFNAAIAMNKPWSEKLHDVAEEVQRCLQKLRQIEEETGLTI
EQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLI
QEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVH
MIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPI
SMETPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTARE
AKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE
VLRSFLDD
>SC2645 rpoE, sigma E (sigma 24 ) factor of RNA polymerase, response to periplasmic stress
MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVV
QESFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDA
IEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRE
LDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQPLIRR
>SC3497 rpoH, sigma H (sigma 32) factor of RNA polymerase; transcription of heat shock proteins induced by cytoplasmic stress
MTKEMQNLALAPVGNLESYIRAANAWPMLSADEERALAERLHYQGDLEAA
KTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVR
LVSFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFN
QDEVEMVARELGVSSKDVREMESRMAAQDMTFDMSSDDESDSQPMAPVLY
LQDKSSNFADGIEDDNWEEQAANRLTDAMQGLDERSQDIIRARWLDEDNK
STLQELADRYGVSAERVRQLEKNAMKKLRAAIEA
>SC3258 rpoN, sigma N (sigma 54) factor of RNA polymerase, pleiotrophic functions (nitrogen metabolism, formate degradation, phage shock response)
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALENNPLLEQT
DLHDEIDTQQPQDNDPLDTADALEQKEMPEELPLDASWDEIYTAGTPSGP
SGDYIDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDD
TGYLTVSLDEIRESMGDVEVDLDEVEAVLKRIQRFDPVGVAAKDLRDCLL
IQLSQFDKSTPWLEKARLIICDHLDLLANHDFRTLMRVTRLKEEVLKEAV
NLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGRWTVELNSDSIPRLQIN
QHYAAMCNSARNDADSQFIRSNLQDAKWLIKSLESRNDTLLRVSRCIVEQ
QQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQG
IMVARRTVAKYRESLSIPPSNQRKQLV
>SC2856 rpoS, sigma S (sigma 38) factor of RNA polymerase, major sigmafactor during stationary phase
MSQNTLKVHDLNEDAEFDENGVEAFDEKALSEEEPSDNDLAEEELLSQGA
TQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLR
LVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWI
RQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAE
QLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTT
QDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRE
RVRQIQVEGLRRLREILQTQGLNIEALFRE
>SC4046 rsd, regulator of sigma D, has binding activity to the major sigma subunit of RNAP
MLNQLENLTERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKESYMRLN
EKALDNFCQSLVDYLSAGHFSIYERILHKLEGNGQLLHAAKIWPLLEDNT
QRIMDYYDTSLETAIDHDNCLEFQQALSDIGEALEARFVLEDKLIMLVFD
AMHDGARVKRPA
>SC1493 rstA, response regulator in two-component regulatory system with RstB (OmpR family)
MNRIVFVEDDAEVGSLIAAYLAKHDIDVIVEPRGDRAEDLILTTQPDLVL
LDIMLPGKDGMTICRDLRHRWQGPIVLLTSLDSDMNHILALEMGACDYIL
KTTPPAVLLARLRLHLRQSEQTQQAKSLQESALTPHKALRFGALTIDPLN
RAVQLNGDFISLSTADFELLWELATHAGQIMDREALLKTLRGVNYDGLDR
SVDVAISRLRKKLLDSAAEPYRIKTIRNKGYLFAPHAWDETTG
>SC3453 rtcR, sigma N (sigma 54)-dependent regulator of rtcBA expression (EBP familiy)
MRKTVAFGFVGTVLDYAGRGSQRWEKWRPTLCLCQQETLVVHRLELLYDA
RSRSLFEGLKKDIASVSPETEVVGVEIAIRNPWDFEEVYACLHDFARSHT
FHPEDEDYLIHITTGTHVAQICWFLLAEARYLPARLAQTSPPRKKDKPHS
TGDVTIIDLDLSRYNDIATRFAQEREETLNFLKSGIATRNPCFNRMIEQI
ERVAIRSRSPILLNGPTGAGKSFLARRIYELKLARHQFSGPFVEVNCATL
RGDTAMSALFGHVKGAFTGAREERAGLLRSADGGMLFLDEVGELGADEQA
MLLKAIEEKRFYPFGSDQQVSSDFQLIAGTVRDLRQRVAEGTFREDLYAR
INLWTFELPGLRQRQEDIEPNLDYELERHAALTGDSVRFNTEARRAWLSF
ATSPQAAWRGNFRELSASVTRMATLADNGRITVETVDDEIARLRYSWNDH
RPSALDGLPGIDATALDLFDRMQLENVVAVCRQAKTLSDAGRQLFNVSRQ
GKATVNDADRLRKYLARFGLTWDVLQN
>SC1954 sdiA, transcriptional regulator of ftsQAZ gene cluster (LuxR/UhpA family)
MQENDFFTWRRAMLLRFQEMAAAEDFYTELQYQTQRLEFDYYALCVRHPV
PFTRPKISLRTTYPPAWVTHYQSENYFAIDPVLKPENFRQGHLHWDDVLF
HEAQAMWDAAQRFGLRRGVTQCVMLPNRALGFLSVSRSSLRCSSFTYDEV
ELRLQLLARESLSALTRFEDDMVMAPEMRFSKREKEILKWTAEGKTSSEI
AIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI
>SC1614 sgcR, putative transcriptional repressor of sgc operon (DeoR family)
MSQQRPDRIKQMLHYLWQHRHLSTQQAIELFGYAEATVRRDFHYIASCYP
GMVRGHGCIDFDDSTEDKEYVFDVKRTLQSEAKREIAALARTFIKDGDCF
FLDSGSTCLELAKCLVDAKVKVICNDIKIANELGGFPHVESYIIGGLIRP
GYFSVGESLALEMINAFAVERTFISCDALSIETGITNATMFEVGVKTRII
QRSREVILMADHSKFDTVEPHAVATLSCITTILSDSALPSAIARRYQQAG
CRLIMSDPSSGAR
>SC0297 sinR, transcriptional regulator
MMELINNRGMRDWMIFIKVAEVGNLSRAARELDISISAVSKSLSRLENSI
EVTLLRRDSHHLELTGSGQTAYASMKRITSSFQSLLDELRNPDKIIRGSI
KFSAPAIVCEFLANKWIWEFTASYPDTKIYLDSRERSDFFSKSLEFDELV
FKSGIIESEDLVYRKISPLKLVLCASPKYIRKYGRISHPGDLENHIIVGL
HNHGLSGPLTLFRQDESYTISGAVNVHLSSNNLLSVLNLVLEGKGINLMT
PAWLATKYLKNNELEIILPEWRVPDLPIYLVWRHRQYSSPLFQRFLSFIE
DKWNNRPQIDFLNDD
>SC1950 sirA, putative response regulator (LuxR/UhpA familiy)
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTNAVDV
VLMDMNMPGIGGLEATRKIARSTADIKVIMLTVHTENPLPAKVMQAGAAG
YLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPAKTETPFASL
SERELQIMLMITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVEL
THLAIRHGLCNAETLTSQ
>SC1462 slyA, transcriptional regulator for hemolysin (MarR family)
MESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQLPPDQSQI
QLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI
AEMEEVIHKTRGEILAGISSEEIELLIKLVAKLEHNIMELHSHD
>SC1241 sopB, SopB protein
MSERVRNMVGNHVTLPVCGRDVTFTLETVDAEMVERATMVWSGNERDQAL
LTQAALDDLIPSFLTSGQQNPAFGRKISGIIEVADGGRRRQTAIYTHSEY
RVLVGDLDDEQMAWLSTIGNSYRQTSAYERGKRYARRLKNEFGDNVSKLA
EAENISRKIIMRCIKTAELPRKIIALFSNPNELSARAGESLAKVYAGNED
AVLSFAQHLAKRQKDGESFETDEILKQLHDVAEKPTKPATRERLFGKGIK
AKYKGDSVSFQLNNVSPVVIQKIETLLKEYQEEQQKLVSEAVDDAFVEID
TVTNFIRAAATGIDYDIPANELQTMIPFSRTVLKEHTNEADRIKRIADEI
TRRYII
>SC4145 soxR, redox-sensing transcriptional activator SoxR, contains iron-sulfur center for redox-sensing (MerR family)
MEKKSPRLKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYK
RDVLRYVAIIKIAQRIGIPLATIGDAFGILPEGHTLSAKEWKQLSSQWRE
ELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNPGDRLGEHGTGARLLE
DD
>SC4144 soxS, transcriptional activator of superoxide response regulon (AraC/XylS family)
MSHQQIIQTLIEWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTL
GEYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRREFDRTP
SDYRHRL
>SC3666 spoT, (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEPYITHPV
AVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGV
SKLDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSL
RPDKRRRIARETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKE
VVKAARGNRKEMIQKILSEIEGRLQEAGIPCRVSGREKHLYSIYCKMVLK
EQRFHSIMDIYAFRVIVHDSDTCYRVLGQMHSLYKPRPGRVKDYIAIPKA
NGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMGVAAHWAYKEHGETSTT
AQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFTPEGRIVEL
PAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLSSGQTVEIITAPG
ARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKL
AEIPQENIQRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQQGEAVVPT
VAQSNHGHLPIKGADGVLITFAKCCRPIPGDPIIAHVSPGKGLVIHHESC
RNIRGYQKEPEKFMAVEWDKETEQEFITEIKVEMFNHQGALANLTAAINT
TTSNIQSLNTEEKDGRVYSTFIRLTARDRVHLANIMRKIRVMPDVIKVTR
NRN
>SC2798 sprB, transcriptional regulator
MRNVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSDMPDAG
LILALNPHEHVYLFHALLTRLQNRKVLVVADRLYYIDRCVLQYFGVMDYV
LKDELSCAIRSEREKLRLPEAWLRFCHRPQKKTVAATYAFNAGETPEEVL
FNINQYAWWNLPPGVTQAKYALLILLSSGHPAIELAKKFGLGTKTVSIYR
KKVMYRLGMDSSPLSLFRGLKLDAHLQRTAFAHNPAVPDDNCALPIAVGM
N
>SC2770 srlR, transcriptional repressor for glucitol operon (DeoR family)
MKPRQRQAAILEHLQKQGKCSVEELAQYFDTTGTTIRKDLVILENAGTVI
RTYGGVVLNKEESDPPIDHKTLINTHKKALIAAAAVKYIHDGDSIILDAG
STVLQMVPLLSRFSNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSA
SFHGQLAENAFEQFSFDKLFMGTDGIDLNVGVTTFNEVYTVSNAMCNAAR
EVILMADSSKFGRKSPNVVCSLETVDKLITDAGIDPAFRQALEAKGIEVI
ITGESNE
>SC2648 srmB, ATP-dependent RNA helicase
MTVTTFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPT
GTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELA
KHTHLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRA
VETLILDEADRMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIKDFA
ERLLEDPVEVSANPSTRERKKIHQWYYRADNFEHKVALLKHLLKQDDATR
SIVFVRKRERVHELAETLRLAGINNCYLEGEMAQIKRNEGIKRLTDGRVN
VLVATDVAARGIDIPDVSHVINFDMPRSGDTYLHRIGRTGRAGRKGTAIS
LVEAHDHLLLLKIGRYIEEPLKARVIDELRPTTRAPSEKLTGKPSKKVLA
KRAEKKKEKEKEKPRVKKRHRDTKNIGKRRKPSGTKMQEQSSEE
>SC1412 ssrB, Secretion system regulator: transcriptonal activator, homologous with degU/uvrY/bvgA
MKEYKILLVDDHEIIINGIMNALLPWPHFKIVEHVKNGLEVYNACCAYEP
DILILDLSLPGINGLDIIPQLHQRWPAMNILVYTAYQQEYMTIKTLAAGA
NGYVLKSSSQQVLLAALQTVAVNKRYIDPTLNREAILAELKADTTNHQLL
TLRERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTEL
LNCARRMRLIEY
>SC3061 stmR, putative transcriptional regulator, LysR family
MELRHIRYFLAVAEERHFTRAATKLGIGQPPLSQQIKDLERELGAQLFRR
VPHGAELTEAGKAFYDAVKGMPATATRAVLAAQRVARGESGVLRVGFTAS
AAFNSVVPGAIRTFKRAYPDVRLQLEEGNTTQLADELNEGSLDVAFLRPG
FTGNERFQLRLLSEEPMVIVLAETHPAAACKQIALSILKDEFFLLFPREI
GLSLYDAVIKACGKAGFEPKIGQLVPQISSVINLVSAEMGVSMVPDSMRQ
VNVKGVVYRPVADQMPVAKLALAYRRGDTSPTLRNFILKVTG
>SC2716 tctD, tricarboxylic transport: regulatory protein
MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVL
DINMPGMDGLEVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLP
KPFELEELDARLRALLRRSAGQVHEVQQLGELIFHDEGYFLLQGQPLALT
PREQALLTVLMYRRTRPVSRQQLFEQVFSLNDEVSPESIELYIHRLRKKL
QGSDVRITTLRGLGYVLERGDEVG
>SC3191 tdcA, transcriptional activator of tdc operon (LysR family)
MNTLVLPKTQHLVVFQEVIRSGSIGSAAKSLGLTQPAVSKIISDVEAYFG
VELIVRKNTGVTLTEAGQVLLSWSESITREMKNMINEMNSMTCNTVVDVS
FGFPSLIGFTFMSDMIHKFKEVFPKAQVSMYEAQLSSFLPALRDGRLDFA
IGTLSNEMQLQDLHVEPLFESEFVLVASKSRTCTGTITLESLKDEQWVLP
QTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFLTVIPCDM
TTPFGSNQFITIPIQDTLPVARYAAVWSKNYRIKKAASVLVELAKQYSSY
NGCRRRQLIEIE
>SC0304 tinR, transcriptional regulator
MRFCFPMTEYLDDKDKELLKEIQKDCAQTLWQLAYKVGLTPTPCFKRLKK
LKDRGGIIGQFALLDKEKLGLSLNVFIMINISEEQYASISEEIKSMPEVI
AFYRISGSFNYLMHTVFTDMNDYYSFYEKIILTNSSISGSASSFVLEQIK
ETNELPV
>SC3742 torR, response regulator in multi-component regualtory system wtih TorS (sensory kinase) and TorT (periplasmic sensor), regulates tor operon (TorR family)
MSHHIVIVEDEPVTQARLQAYFEQEGYSVSVTDSGAGLRDIMEHEHVSLI
LLDINLPDENGLMLTRALRERSTVGIILVTGRCDQIDRIVGLEMGADDYV
TKPLELRELVVRVKNLLWRIDLARPTPQNASENCYMFSGYCLNVMNHTLE
HNGEAIKLTRAEYELLLAFVTNPGKVLHRERLLRMLSARRVETPDLRTID
VLVRRLRHKITPELLVTQHGEGYFLASEVY
>SC4311 treR, transcriptional repressor of treABC (GalR/LacI family)
MQNRLTIKDIARLSGVGKSTVSRVLNNESGVSERTRERVEAVMNQHGFSP
SRSARAMRGQSDKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMES
QFSPTLVMEHLGMLRRRNIDGVVLFGFTGITEELIAPWKASLVLLARDAQ
GFASVCYDDEGAIHILMQRLYEQGHRNISFLGVPHSDITPGKRRHDAYLA
FCKKHKLHPVAALPGLAMKQGYEHTASVIMPDTTALVCATDTLALGASKY
LQEQRIETLQLASVGNTPLIKFLHPEIVTVDPGYAEAGRQAASQLIEQIN
GRCEPRRIVIPSTLA
>SC4428 trpR, transcriptional repressor for trp operon and aroH (TrpR family)
MTQHSPYSSAIAEQRNQEWLRFVELLRQAYAEDLHLPLLQLMLTPDEREA
LGTRVRIIEELLRGEMSQRELKTELGAGIATITRGSNSLKSAPVELRHWL
EQILLKSA
>SC3655 ttk, putative transcriptional regulator (TetR/ArcR family)
MAEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYR
HFPSKTRMFDSLIEFIEDSLITRINLILKDEKNTSTRLRLIVLLILGFGE
RNPGLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVLREKRMREGEG
YTTDENLLASQLLAFCEGMLSRFVRSEFKYRPTDDFDARWPLIAAQLQ
>SC1676 tyrR, transcriptional regulator of aromatic amino acid biosynthesis genes (aroF, aroG, tyrA) and aromatic amino acid transport, has intrinsic ATPase and pho
MRLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIGRIYLNFAELEFTD
FSSLMAEIRRISGVTDVRTVPWMPSEREHLALSALLEALPEPVLSLDMKS
KVEMANPASCQLFAQNQERMRHHTAAQLINGFNFQRWLDGNPQSSHNEHV
VINGQNFLMEITPVHLQNENDEYVLTGAVVMLRSTIRMGQQLQNLSTQDL
SAFSQIIAVSAKMKHVVEQARKLAMLSAPLLITGDTGTGKDLFAYACHQA
SPRSAKPYLALNCASIPEDAVESELFGHAPEGKKGFFEQANGGSVLLDEI
GEMSPRMQAKLLRFLNDGTFRRVGEDHEIHVDVRVICATQKNLVELVQKG
LFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQGVPRPKLS
ADLSTVLTRYGWPGNVRQLKNAIYRALTQLEGYELRPQDILLPDYDAATV
AVGEDAMEGSLDDITSRFERSVLTQLYRSYPSTRKLAKRLGVSHTAIANK
LREYGLSQKKGEE
>SC3710 uhpA, response regulator (repressor) in two-component regulatory system wtih UhpB, regulates uhpT operon (LuxR/UhpA family)
MNSRALIVKVSAFFLSIRTEPMITVALIDDHLIVRSGFAQLLGLEPDLQV
VAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLS
VHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAVK
LAAGRQDPLTKRERQVAEKLAQGMAVKEIAAELGLSPKTVHVHRANLLEK
LGVSNDVELAHRMFDGW
>SC2001 umuD, error-prone repair: SOS-response transcriptional repressors (LexA homologs, RecA-mediated autopeptidases)
MEFFRPTELREIIPLPFFSYLVPCGFPSPAADYIEQRIDLNELLVSHPSS
TYFVKATGDSMIEAGISDGDLLVVDSSRNADHGDIVIAAIEGEFTVKRLQ
LRPTVQLIPMNGAYRPIPVGSEDTLDIFGVVTFIIKAVS
>SC3024 uxuR, putative regulatory protein, gntR family
MFTLPSSGAIAVYIGMCMEQILTKRRYFDIGLRIEELLYSGVFKAGERLP
AERELSERFQTSRTTIREAIIMLELKGMVEVKQGAGTYFIDSLEKINQKA
LLPYSDIGPFELLQARQVIESNITGFAATQIRFNELKQLKRIIEQQEKQI
GGDSDKFEELDRQFHNIIAESTQNRVLMKQSAELWRAVRTENPRWKQLNY
KYLHKKELRMKWVEDHRSIFLALQKRDAEQARQASWTHLENSKNELVKIF
QQDDSLEDFDDFFFAT
>SC4362 uxuR, transcriptional repressor for uxu operon
MKSNTSQQRPYQEVGAMIRDLIVQTPYRPGERLPPEREIAERLNVTRTVV
REALIMLEIKGLVEVRRGAGIYVLDSADNNEMEGADVNHSNDAGPFELLQ
ARQLLESNIAEFAALQATREDIIKMRQALQLEERELASSAPGGSESGDMQ
FHLAIAEATHNSMLVELFRQSWQWRENNPMWLQLHSHLGDTLYRKEWLVD
HKQILAALIKKDARAAKLAMWQHLENVKQRLLEFSNVDDIYFDGYLFESW
PLDNVDA
>SC4244 vacB, putative exoribonuclease
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASREELAVELNIEGEE
QLEALRRRLRAMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLR
VEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTS
QIVGRYFTDAGVGFVVPDDSRLSFDILIPPEDVMGARMGFVVVVELTQRP
TRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYIWPQAVEQQVAGLKE
EVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDREARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDR
LCMVCEMTISAKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQY
APLVKHIEELHNLYKVLDKAREERGGISFESEEAKFIFNADRRIERIEQA
QRNDAHKLIEECMIMANISAARFVEKAKEPALFRIHDKPTTEAITSFRSV
LAELGLELPGGNKPEPRDYAELLESIADRPDAEMLQTMLLRSMKQAIYDP
ENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQGNKGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNVFKGV
IASVTGFGFFVRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTY
RLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTAREKAKKGESKNA
GKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAAT
KAKRAAKKKAAE
>SC2417 xapR, regulator for XapA (LysR family)
MERAHRIDLKLLRYFLAVAEELHFGRAAARLNMSQPPLSIHIKELEQQLG
TLLFIRHSRSVALTHAGKVLMEESRRLLANANQALARVEQIGRGEAGRIE
LGVVGTALWGRMRPAMRHFLKANPNVEVLFREKSPGMQMALLERRELDAG
IWRMAIEPAVGFTSIRLHESAFMVAVPEDHDLASRDSVPLAALRNEYFVT
LPSVHSDWGFLQRVCQQAGFSPMIIREVVEPQTVLAMISMGIGITLMADG
YAQMSWPGVVFRPLEERIPADLYIVYDQQQATPALEKLVAVLTV
>SC3597 xylR, xylose operon regulatory protein (AraC/XylS family)
MFDKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARID
NIKEWLGDGVIADYDDDDIAQLLADVDVPIVGVGGSYHLAENYPAVHYIA
TDNHALVESAFLHLKEKGVNRFAFYGLPDSSRKHWAAEREYAFRQLVAEE
KYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHVLQ
ACEHLHIPVPEKLCVIGIDNEELTRYLSRVALSSVAQGARQMGYQAAKLL
HRLLAREEMPLQRILVPPVRVIARRSTDYRSLTDPAVIQAMHFIRNHACK
GIKVEQVLDAVGISRSNLEKRFKEEVGETIHALIHAEKLDKARSLLISTT
LAINEISQMCGYPSLQYFYSVFKKEYVATPKEYRDQHSEALL
>SC0252 yafC, putative transcriptional regulator, LysR family
MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMKLGVSLL
NRTTRQLSLTEEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAA
TPVMLHFLMPLIKPFRERYPEITLSLVSSETFINLIERKVDVAIRAGTLT
DSSLRARPLFTSYRKIIASPDYIARFGKPETVEELKRHLCLGFSEPVSLN
TWPIACSDGQLHEIECGISSNSGETLKQLCLNGNGIACLSDYMIDKAIAR
GELVELLADKRLPVEMPFSAVYYSDRAVSTRIRAFIDFLSEYIRTAPAGA
VKEG
>SC0906 yafC, putative transcriptional regulator, lysR family
MIKTDLNDFAWFVHVVEEGGFAAAGRALDEPKSKLSRRIAQLEERLGVRL
IQRTTRQFNVTEVGQTFYEHCKAMLVEAQAAQDAIAALQVEPRGIVKLTC
PVTLLHVHIGPMLAKFMARYPDVSLQLEATNRRVDVVGEGVDVAIRVRPR
PFEDSDLVMRVLADRGHRLFASPDLIARMGIPSAPAELSHWPGLSLASGK
HIHRWELYGPQGARAEVHFTPRMITTDMLALREAAMAGVGLVQLPVLMVK
EQLAAGELVAVLEEWEPRREVIHAVFPSRRGLLPSVRALVDFLTEEYARM
VEE
>SC3587 yafP, putative acetyltransferase
MKIRRFSNGDEISLFRVFFSSVHTIASHYYTREQIDAWAPADIDLERWAN
HIKELQPFVVELDGEIAGYADFQPNGYIDHFFVSGTYSRQGVGILLMNCI
HEEARQRGISELTSNVSKAAEVFFLRHGFHIVERGFPICRGVTLQNALMR
KCLAK
>SC0434 yajF, putative sugar kinase/putative transcriptional regulator (NagC/XylR familiy)
MRIGIDLGGTKTEVIALDDAGEQRFRHRLPTPREDYQQTIETIATLVDMA
EQATGQTGSVGIGIPGSLSPYTGVVKNANSTWLNGQPFDSDVSRRLKRAV
RLANDANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVALNGRTHIGGNG
TAGEWGHNPLPWMDDDELRYREEIPCYCGKQGCIETFISGTGFATDYQHL
SGNALKGDEIIRLVDAQDAVAELALSRYELRLAKALSHVVNILDPDVIVL
GGGMSNVERLYKTVPSLMKSFVFGGECETPVRKARHGDSSGVRGAAWLWP
LA
>SC0456 ybaD, putative transcriptional regulator
MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVAELVMPR
VIKSNDVREPFNEDKLRSGMLRALEKRPVSADDVEMALNHIKSQLRATGE
REVPSKMIGNLVMEQLKKLDKVAYIRFASVYRSFEDIKDFGEEIARLQD
>SC0501 ybaO, putative transcriptional regulator (AsnC familiy)
MLDKIDRKLLCLLQQDCTLSLQALADAVNLTTTPCWKRLKRLEDDGILLG
RVALLDPEKLGLGLTAFVLIKTQHHSSEWYCRFVTVVSEMPEVLGFWRMA
GKYDYLMRVQVADMKRYDDFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLP
IE
>SC0555 ybbS, putative transcriptional regulator, LysR family
MFDPETLRTFISVAETGSFSKAAERLCKTTATISYRIKLLEENTGVGLFF
RTTRSVSLTAAGSHLLSQAKDWLAWLDSMPDELRQVNDGVERQVNIVVNN
LLYSPQAVASLLSWLNARYPFTQFHFSRQIYMGVWDSLLYEGFSLAIGVT
GTEPLANTFMLDPLGSVQWRFLMSADHPLAHVSGPLTEAQLRRFPAINIE
DSARTLTKRVAWRLPGQKEIIVPDMETKIAAHLAGVGIGFVPQPLCQTLI
DKNELVSCTIPTMRPPSPLSLAWHKFGGGKAVEDIVKLFTQRQPEIAGFL
SIFNTVRCEKSSHFANWRVK
>SC1034 ybcM, bacterial regulatory protein, AraC family
MHIRHQDLTTAEVRSSHLHRLHRVTLFSAAICHITQGSKVIIQDDSRLVA
GPGELIIIPANTPLEIINQPAQNGFRSDLLLLSPEIIARFKTMYVQDYPP
ANLTSLCTPMSRSLTFMWENVLDAVRQGLPVGLQEHQAMGLLLALLHDGA
AGPLLIERRYTLTEQVRQLIMLSPAKLWTAQEIARRLAMGTSTLRRRLQR
ESQSYRQIVEEVRMSCALSQLQSTTLPIGEIALRCGYLSGSRFTARFRQH
YGCLPSQVR
>SC0635 ybdM, putative transcriptional regulator
MQHRLTTEITHFLSELPEEERIAAINEFRMAIHSVSPFRDEPVDCVLWVK
NDHISPNDYNPNNVAPPEKKLLLKSIEQDGFTQPIVVVKANTEEYEIVDG
FHRHELGKGKAALKRRLKGYLPITCLDRERHERMAATIRHNRARGRHQIH
AMSEIVRELSLLGWDESKIGQELGMDADEVLRLKQINGLQELFADRRFSR
AWTVK
>SC0014 ybdO, putative transcriptional regulator, LysR family
MGSKGANKSFDYNLIKILDAVILSGNAAMAAKKLGITPAAVSLALKRLQS
YYPEELFSRGKGGLIPTAKAVDIHQNFSQVMKLVDDTFLCNSKKDEAFQI
TLLGSDIVESYYLSQLYNSDIFDRILINHFTVRNMSREHISELLFTAQGD
LLISAEPLLESGIENQIIDSFKSFVCICSSKHMLSILSQLSLHHFYSSRH
ALYQPGMGASVIYHDSELFKDELYYTGRRIVGYRSDSLNGLMSMIERTSL
IALMPLKLALFYKNHRKYDIKFIQPPPELALKSVQVYASWNKNSRNISTI
NEMVSMLQTLSSFRR
>SC0637 ybdO, putative transcriptional regulator, LysR family
MANLYDLKKFDLNLLVIFECIYQHLSISKAAETLYITPSAVSQSLQRLRT
QFNDPLFIRSGKGITPTVTGINLHYHLENNLNSLEQTINIMNQSSLKKKF
IIYSPQLLITQYVMKLVKYIRKDPQVEIEHHDILTTDELPEDLLAYRKAD
IVVSMAPLNNRSIVCTHFNRPECILVCSENHPRLGDTATIDEILQESFTQ
LVSRATGMKEYHSLMDDVLGERIIGFRSKSLMTIANSISSTELIGFLPQT
FFDYYSSSIKLKKVTIPFTIAPIQFYLMYNRASLNNSGFAELIEHITKKH
>SC0663 ybeF, putative transcriptional regulator, LysR family
MSDNNQAERQPADQHLQDKPQIFRTLRNIDLNLLTIFEAVYVHKGIVNAA
KILNLTPSAISQSIQKLRTIFPDPLFIRKGQGVTPTTYATHLHEYISQGL
ESILGALDLTGIYDKQRTITIGTTSSVGALVMPIVYQAIRPRYPQLLLRN
IPVDDAESQLSQFQTDLIINTHSYNNRSIQHHVLFSDTLEIVCRQHHPCL
ANAITEERLNSADHTFLMLEGQHLSLLRQRLQETFPDQQISFSSYNIFTI
ASLIASSDLLGLMPTRFYDLFSRCWPLERLPYAPVNSEQVEFSLHYNKLS
LRDPVLENVIDIIREAF
>SC0816 ybiH, putative transcriptional repressor (TetR/AcrR family)
MNIPTTTTKGEQAKSQLIAAALAQFGEYGLHATTRDIAALAGQNIAAITY
YFGSKEDLYLACAQWIADFLGEKFRPHAEKAERLFSQPAPDRDAIRELIL
LACKNMIMLLTQEDTVNLSKFISREQLSPTSAYQLVHEQVIDPLHTHLTR
LVAAYTGCDANDTRMILHTHALLGEVLAFRLGKETILLRTGWPQFDEEKA
ELIYQTVTCHIDLILHGLTQRSLD
>SC1024 yccR, putative DNA transformation protein
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYL
RACEESVPYCVKHPPAWLMFMKCGRPVMLNYYRVDESLWRDQQQLVRLSK
YSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAK
MCWLRLRQSNPLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSITA
G
>SC1072 ycdC, putative transcriptional repressor (TetR/AcrR family)
MSQRTEKKIGKRSQATGAKRQLILTAALAVFSQYGIHGARLEQVAERAGV
SKTNLLYYYPSKEALYVAVMRQILDVWLAPLKAFRAEFSPLEAIKEYIRL
KLEVSRDYPQASRLFCMEMLAGAPLLMEELTGDLKALIDEKSALIAGWVH
SGKLAPVSPHHLIFMIWAATQHYADFAPQVEAVTGATLRDEAFFNQTVES
VQRIIIEGIRVR
>SC1163 ycfQ, putative transcriptional repressor (TetR/AcrR family)
MTTDTTSCAKKSRGRPKVFDREAALDKAMTLFWQHGYEATSLADLVEATG
AKAPTLYAEFTNKEGLFRAVLDRYITRFASKHEAQLFCEEKSVESALEDY
FTEIAACFTSTDTPAGCFMINTSATLAASSRDIARTVKSRHAMQEQTLIQ
FLRQRQERGEIPAHCNPQALAEYINCILQGMSISAREGATFEQLMQITRT
TLRIWPELLKP
>SC1170 ycfX, putative regulator (NagC/XylR family)
MYYGFDIGGTKIALGAFDSTRRLQWEKRVPTPHTSYSAFLDAVCELVAEA
DQRFGVKGSVGIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDV
RLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLVLNGKPITGQSY
ITGEFGHMRLPVDALTLMGFDFPLRRCGCGQMGCIENYLSGRGFAWLYQH
YYDQSLQAPEIIALWEQGDEQAHAHVERYLDLLAVCLGNILTIVDPDLLV
IGGGLSNFTAITTQLAERLPRHLLPVARAPRIERARHGDAGGMRGAAFLH
LTD
>SC1277 ycgE, putative transcriptional regulator
MATFSISAMAAQCGVTTANIRSWERYGLLQPTKDEAGNRFYCIEDAIRIQ
HIIDALSQGFSLKEIKPALYGEETHCRSGWLFYQEEILAQCRKFEPAKLR
KLLWRYGREIPPCIVIESILRPLRLWLSAGDDDARRFEKALLNTAIIEYA
TFQLSSVRKAPAGTMLIAAFSLNDPIELWLETIKYCSEGMRVEVIPWQAP
MPDLLSTSFEHIVLWHDETLTPAQENLIQALKESGKFSLHVKNGSCLTLL
PAVYRQHEMPESMQHVAPQIHANGYEKSGTAR
>SC1699 yciT, putative regulatory protein, deoR family
MNSRQQSILQMVVDKGQMSVAELAKITGVSEVTIRQDLNTLEKQSYLRRA
HGFAVSLESDDVETRMMTNYTLKRRLAEFAASLVSPGESVFIENGSSNAL
LARTLAEQKDVTIITVSSYIAHLLKETPCEVILLGGIYQKKSESMVGPLT
RQFIHQVHFSKAFIGIDGWQADTGFTGRDMMRSDVVNAVLEKGSEAIVLT
DSSKFGCVHPYPLGPLSRLHRVITDSKISASDQMQLEHAGLLVNVIGSSV
>SC1620 ydcI, putative transcriptional regulators, LysR family
MLSGYQKQTTLLVTRTALFLTSLMEKNGLFSQRIRLRHLHTFVAVAQQGT
LGRAAETLNLSQPALSKTLNELEQLTGTRLFERGRLGAQLTVPGEQFLTH
AVKVLDALNTAGQALNRKEDASADVVRVGALPTAALGILPAAIGRFHQQQ
KSTSLQVATMNNTMLLAGLKSGEIDLGIGRMSDPELMGGLNYELLFLESL
KLVVRPGHPLLQETITLSRVMEWPVVVSPKGTVPRQNAEALLQSQGCKMP
AGCIETLSASLSRQLTVDYDYVWFVPSGAVKEDLRQATLVSLPVPTQSAG
EPIGILTRVDIPLSTGAQMLIAAIRKSMPL
>SC1660 ydcN, putative transcriptional regulator
MTKKVNLSTTAGADVSTINEAVSQRIKQFRSQKKMSLDELARRSGVSKGM
LVEIEGCKANPSIALLCKIAAAMGVSVADFVNVASEPMVHLIDRDATPVL
WRGEKGGSAKLMAGTSGPDMLELWQWIMHPGEQFESAGHPADTCELLFVN
QGTLTLTVDGRRFIIREGCSAVARTDMPHAYVNDTNEVLEFTMTVNEKSR
>SC1602 ydcN, putative oxidoreductase/putative repressor
MDNLTHYLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNESSPTVA
TLWKIATGLNVPFSVFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFD
YFSLLLAPGAVSESTPHKAGVVEHVVVIQGRLDMCTGGVWQTIDAGKGLR
FAGDMAHTYRNSSDQTVHFHSLIHYPRG
>SC1595 ydcR, putative regulatory protein, gntR family
MKKYQRLAEQIREQIASGVWQPGDRLPSLREQVASSGMSFMTVGHAYQLL
ESQGRIIARPQSGYYVAPHPVCRSVATAAHVIRDEAVDINTYIFEMLQAS
RDTSVVPFASAFPDPRLFPLPQLNRSLAQVSKTATAMSVIENLPPGNAEL
RYAIARRYAQQGITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPC
FYGALQALERLRLKALSIPTDVKEGIDLMALEQALQEYPVKACWLMTNSQ
NPLGFTLSAEKKARLVALLTHHNVTLIEDDVYSELYFGREKPLPAKAWDR
DDTVLHCSSFSKCLVPGFRIGWVAGGSHARQIQRLQLMSTLSTSSPMQLA
LVDYLSTRRYDAHLRRLRRQLAERKQQAWQTLLRHLPAEVKIHHNDSGYF
LWLELPEQLDAGELSAKALEHLISIAPGKMFSTSGAWTRFFRFNTAWHWG
EREEQAVKQLSSLIREMLSAKSLV
>SC3963 ydeW, putative transcriptional repressor
MSDNTLVSDYGMCEEEQMARIAWFYYHDGLTQSEISERLGLTRLKVSRLL
EKGHQSGIIRVQINSRFEGCLEYENALRNHFALQNIRVLPALPDADIGLR
LGIGAAHMLMESLRPQQLLAVGFGEATMTTLKHLSGFISAQQIRLVTLSG
GVGPYMTGIGQLDAACSVSIMPAPLRASSQEIACTLRNENSVRDVMLTAQ
AADAAIVGIGAINQKDQASILKSGYITQGEQLMIGRKGAVGDILGYFFDA
HGEIIPGIKIHNELIGLKLNSLSTIPTVIGVAGGEQKAEAIIAAMRGNYI
NALVTDQKTAGKIIQLIEK
>SC1527 ydfH, putative regulatory protein, gntR family
MTVETQLNPTQPVNQQIYRILRRDIVHCLIPPGTPLSEKEVSTRFNVSRQ
PVREAFIKLAENGLIQIRPQRGSYVNKISLSQVQNGCFVRQAIECAVVRR
AAAMITDNQCYQLAQNLHLQHIAIERKQIDDFFQLDDDFHQKLAQIADCQ
LAWDTIENIKATIDRVRYMSLDHVSPPEMLLRQHHDIFSALENRDGNAVE
SAMTQHLQEISESVQLIRQENSGWFSED
>SC1448 ydhB, putative transcriptional regulator, LysR family
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFV
RRHRDVELTPAGVWFLKEGRSVIKKMQITRQQCQQIANGWRGQLAIAVDN
IVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATQ
AIPVGGRYAFRDMGTLSWSCVVASDHPLASMPRPLSDDTLRNWPSLVRED
TSRTLPKRITWLLDNQKRVVVPDWESSATCLSAGLCVGMVPTHFARQWID
SGKWVALTLENPFPDAACCVTWQQNEASPALAWLLDYLGDSETLNREWLR
EPEEAPDSGD
>SC1456 ydhM, putative transcriptional repressor (TetR/AcrR family)
MQRGFTGMGLSELLKTAQVPKGSFYHYFRSKEAFGVAMLERHYACYHQRL
TAHFTSGPGNHRDRLLAWYQETLKQFCQQGAISGCLTVKLSAEVCDLSED
MRSTMDKGAQEIMALLARALEDGRNSHCLHFTGQPLPQAQVLYALWLGAN
LQAKISRSAAPLENALAHVKTIIATPEQ
>SC1374 ydiP, putative transcription regulator, AraC family
MYQRCFDSAAETIFEQDKTPRFSRFVISDDPNWESGHHMHDNETELIYVK
KGIARLIIDSSLYVAHADDIVVVERGRLHAVASDSNSPATTYTCALYGFC
FPGWEENQLLQSHSCPVVSVVQGKEVIKSIFNELSVLLPQGKNVLASSVY
DAFAYTLTALYYENFKNAYRSEQGYIKKDVLIKDVLVYLNNNYREKITLD
QLSKKFRASVSYICHEFAKEYHISPINYVIQRRMTEAKFALTNTESPLAE
ISWRVGYENVDHFAKLFMRHVGCSPNDYRKQFKNSLVEQAYLLPNT
>SC1313 ydjF, Hypothetical transcriptional regulator ydjF
MAAKDRIQAIKQMVANDKKVTVSNLSSIFQVTEETIRRDLEKLEDEGFLT
RTYGGAVLNSAVLADNIHFYKRAKSFYEEKQIIARNTLPFIKNKTTMAAD
SSSTVMELLKLLKDRNDLTLLTNSAEAFHELAQSDINLVSTGGELNKNTL
SLQGRITKEIISRYHVDIMVMSCKGLDMASGALDSNEAEAEIKKTMIRQA
TEVALLVDHSKFNRKAFVRLVDFSHIHYLITNKMPGDEWIAFCDKNNIQL
VY
>SC1290 yeaM, putative regulator (AraC/XylS family)
MIGLRLDGYDPDLHHDAAVAFCIRARDDELFSPSHQHRKGQLILALHGAI
TCEVENAMWMVPPQYAVWLPGSLPHSNHVTAEAELCFLFIEPAAVVMPER
CCTLKISPLCRELILSLARRTDSERAQMPTQRLIQVLFDELPQQPQEQLQ
LPISGHPKIRQMVETMAQEPARWNTLGQWASVFAMSERNLARLVVKETGL
SFRRWRHQLQLILALQALIAGRNVQQTAQMLGYDSTTAFITMFKKGLGQT
PGQYLTGELLLPHN
>SC1893 yebK, putative transcriptional regulator
MNMLEKVQSQLEHLSKSERKVADVILAAPGRSIHLSIAMLAQEANVSEPT
VNRFCRSMNTRGFPDFKLHLAQSLANGTPYVNRNVDEDDSVEAYTGKIFE
SAMASLDHVRQSLDKSAVNRAVDLLTQAKKIAFFGLGSSAAVTHDAMNKF
FRFNVPVIYSDDIVLQRMSCMNCSDDDVVVLISHTGRTKSLVELAQLARE
NDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVL
ATGFTLRRGAKFRDNLKRVKEALKESRFDKELLIKSDDR
>SC1878 yebY, putative periplasmic or exported protein
MKKILLPALLLATSGVALAAPQVITVSRFEVGKDKWAFNREEVMLTCRPG
QALYVINPSTLVQYPLNAIAEQQVAEGKTRAQPIAVIQIDNPAKPGEKMS
LAPFIERAQKLCDPSNS
>SC2079 yeeY, putative transcriptional regulator, LysR family
MKPLLDVLIILDALEKEGSFAAASAKLFKTPSALSYTVHKLENDLNIQLL
DRSGHRARFTRTGKMLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVD
DTFPFSLLAPLIDAFYQRHSVTRLKFVNGVLGGSWETLTQGRADIIVGAM
RAPPPDTGFGFARLGDLELVFAVAPHHPLVHEEEPLSRQTIKRFRAIVVG
DSVHSSRSIGSELLDAQEAITVFDFKTKLELQISGLGCGYLPRYLAQRFL
ESGALIEKKVVAQIVYEPVWVGWNEQTAGLASGWWRDEILANNAIAGVYA
KSPV
>SC2160 yegW, putative regulatory protein, gntR family
MEQAHTRLIAQLNERISAADNTPLYMKFAQTVKDAVRSGILEHGNILPGE
RDLSQLTGVSRITVRKAMQALEEEGVVTRARGYGTQINNIFEYSLKEARG
FSQQVVLRGKKPDTLWVNKRVVSCPDEVAQHLAIPAGSDVFLLKRIRYVD
EDAVSIEESWVPAHLIHDVDAIGISLYDYFRRQHIYPQRTRSRVSARMPD
DEFQSHIQMDGKVPVLVIKQVALDQQQRPIEYSISYCRSDLYVFVCEE
>SC2174 yehT, putative regulator
MIKVLIVDDEPLARENLRILLQGQDDIEIVGECANAVEAIGAVHKLRPDV
LFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHAFDYLL
KPIEEKRLEKTLHRLRQERSKQDVSLLPENQQALKFIPCTGHSRIYLLQM
DDVAFVSSRMSGVYVTSSEGKEGFTELTLRTLESRTPLLRCHRQFLVNMA
HLQEIRLEDNGQAELILRNGLTVPVSRRYLKSLKEAIGL
>SC2176 yehV, putative transcriptional repressor (MerR family)
MALYTIGEVALLCDINPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRI
REIKRWIDNGVQVSKVKVLLSSDSSEQPNGWREQQEILLHYLQSSNLHSL
RLWVKERGQDYPAQTLTTNLFVPLRRRLQCQQPALQALLGILDGILINYI
ALYLASARKKQGKDALVIGWNIHDTTRLWLEGWVASQQGWRIDVLAHSLS
QFRPELFDGKTLLVWCGENQTLAQQQQLLAWRAQGRDIHPLGV
>SC2217 yeiE, putative transcriptional regulator, LysR family
MHITLRQLEVFAEVLKSGSTTQASVMLSLSQSAVSAALTDLEGQLGVQLF
DRVGKRLVVNEHGRLLYPRALALLEQAVEIEQLFREDNGAIRVYASSTIG
NYILPAMIASYRQHYPALPLELSVGNSQDVINAVLDFRVDIGLIEGPCHS
TEIISEPWLEDELVVFAAPSSPLTQGPVTLEQLAASPWILRERGSGTREI
VDYLLLSHLPRFHMAMELGNSEAIKHAVRHGLGISCLSRRVIAEQLQAGT
LGEVAVPLPRLVRTLWRVHHRQKHLSNALQRFLSYCE
>SC2240 yejH, putative ATP-dependent helicase
MIFTLRPYQQEAVDATLSHFRRHRTPAVIVLPTGAGKSLVIAELARVARG
RVLVLAHVKELVAQNHAKYCALGLEADIFAAGLKRKESQGKVVFGSVQSV
ARNLDAFQEEFSLLIVDECHRIGDDEDSQYQQILTHLSKVNPHLRLLGLT
ATPFRLGKGWIYQFHYHGMVRGNDNALFRDCIYELPLRYMIKHGYLTPPE
RLDMPVVQYDFSRLQAQSNGLFSEADLNRELKKQQRITPHIISQIMEFAQ
TRKGVMIFAATVEHAKEIVGLLPADDAALITGDTPGPERDALIDNFKAQR
FRYLVNVSVLTTGFDAPHVDLIAILRPTESVSLYQQIVGRGLRLAPGKTD
CLILDYAGNPHNLYAPEVGSPKGKSDNVPVQVFCPACGFANTFWGKTTAD
GTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRE
CDAILVDPDDMLKAALRLKDALVLRCSGMTMQHGQDEKGEWLKITYYDED
GADVSERFRLHTPAQRTAFEQLFIRPHTRTPGVPLRWITAADIVAQQALL
RHPDFVVARMKGQYWQVREKVFDYEGRFRRAHELRG
>SC3463 yfaX, putative bacterial transcriptional regulator
MKKITTSIPALDKIMRVFAYLLECDGATFTQIHQNSGIAKSSTSSLLNGM
VEHGLLRQEKDKYYLGLRLYELGNKAAEQYDIKKIALPILEEIRDNTGLT
CHLGVLEGDAPIYLLKVESPQAIVIRSWEGKRLSLHSSGLGKVLIAWLSG
EELEELLPPDQILTRFTDTTITDVNILKQELAGVRRRGWGYDNEEDSLGV
RCIAVPVFNTQGKVIAALSVSGVTFQIPDDKRESLATLMMDASRSLTRLM
C
>SC2295 yfaX, putative transcriptional regulator
MLESSKVPALTRAIDILNLIARIGPCSAAIIIETLRIPKSTAYLLLNELK
RQRFISLDHQDNYCLWTKLVELSGHALSKMDLRELARPRLTQLMDETGLL
CHLGIIDHENAYYILKVESSSTISVRSHEGKSLSLYRSGIGKCLLAWQPA
AVRKAIIEQLVWERATLTTITEPQQLNDELERIRQRGWSFDNGEDYPDVR
CVAAPVFNARNELTAAISVVGTRLQINEENLDYLAGKAIACAKDISRLLG
WKSPFDSLAS
>SC2422 yfeR, putative transcriptional regulator, LysR family
MNYSLRQLRIFITVAQAKSFSRAGDRIGLSHSAVSHSVKELERQTGVRLL
DRTTREVVLTEAGQQLATRLERVLDELNSILRDAGRVGTQLTGTVRVAAS
QTISAHLIPQCIAQSNSLYPAIDFVLHDRPQQWVLESIRQGEVDFGIVID
PGAAVDLQCEAILSEPFLLLCRQDHPLAHQEWVSWQDLKQASLVLQDYAS
GSRPLIDAALAHFAIEADIVQEIGHPATLFPMVEAGIGISVLPALALPLP
QGSHLQVKRLTPVVERQLMLARRKNRSLSTAAQALWDVVRTQASELTAAR
AKDPLYQL
>SC2567 yfhH, putative ABC superfamily (membrane) transport protein
MNCLIRIRQRYPDLAQSDRKLADYLLAQPDTARHLSSQQLAAEAGVSQSS
VVKFAQKLGFKGFPALKLAISEALASNPNPHSVPVHNQIRGDDPMRLVGE
KLIKENVAAMHATLDVNSEEKLLESVTMLRHARRIVITGIGASGLVAQNF
AWKLLKIGINAVVERDMHALLATVQALAPEDLLLAISYSGERRELNLAAD
ETLRAGAKILAITGFSPNALQQRATRCLYTIAEEQATRSAAISSTHAQMM
LTDLLFMALVQQDLERAPERIRHSEALVKKLV
>SC2538 yfhP, believed to be involved in assembly of Fe-S clusters
MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLR
KNGLVSSVRGPGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQG
GDKCLTHALWRDLSDRLTGFLNNITLGELVNNQEVLDVSGRQHTHDAPRA
SGRAQDAIDVKLRA
>SC2649 yfiE, putative transcriptional regulator, LysR family
MFFNSEFEIFDRLVVMDLRRFITLKTVVEEGSFLRASQKLCCTQSTVTFH
IQQLEREFSLQLFEKIGRRMCLTTEGKKLMPHIHELTRVMELIREAARQD
AEPGGELRVATGETLLAYKMPQVLQRFKLRAPNVKLSLQSLNCYVIRDAL
LNDEVDLGVFYRVGNDDALTMQQLGEQSLALVASPLLQDADFTQPDQHIP
CSFIINEPQCVFRQLFESTLRQRRITLENTIELWSIESIKQCVAANLGIS
FLPRFAVERELSTGQLKELPFGAPSLSIMALCAHHAGKAVSPAMQIFMQC
MEACFTVEDKKMPG
>SC2772 ygaA, putative regulator (EBP family)
MSFSVEVLAGIAIELQRGIGHQDRFQRLITTLRQVLACDASALLRYESRQ
FIPLAIDGLAQDVLGRRFTLEGHPRLEAIARAGDVVRFPADSDLPDPYDG
LIPGQESLKVHACVGLPLFAGQNLIGALTLDAMTPEQFEVFSDEELRLVA
ALAAGALSNALLIEQLESQNMLPGSSGVFEPIKETHMIGLSPAMTQLKKE
IEIVAGSDLNVLIGGETGTGKELVAKAIHQGSPRAVNPLVYLNCAALPES
VAESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLL
RVLQYGDIQRVGDDRSLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSV
FPLFVPPLRERGDDVVLLAGYFCEQCRLRLGLSRVVLSPGARRHLLNYGW
PGNVRELEHAIHRAVVLARATRAGDEVVLEEQHFALSEDVLPAPSAESFL
ALPACRNLRESTENFQREMIRQGRWRKIITTGRPVRGRWKPTSPTCIGWR
SVWD
>SC2726 ygaE, putative transcriptional repressor (GntR familiy)
MTALSQPTAIDGYRWLKNDIIRGTYQPDEKLRMSLLTARYALGVGPLREA
LSQLVAERLVTVVNQKGYRVASMSEAELLDIFDARANMEAMLVRLAIERG
DDAWEAEILARAHMLSKLEASDASEHMLDEWDQRHQAFHSAIVAGCGSHY
LLQMRERLFDLAARYRFIWLRETVLSVEMLEDKHIQHHTLTEAILAREAA
RASELMRQHLLTPIPIIRQAMAGKM
>SC2729 ygaV, putative regulatory protein, arsR family
MTELEQLQASAEQAAALLKAMSHPKRLLILCMLCGSPKTSAGELARITGL
SPSATSQHLARMREEGLIDSQRDAQRIHYFIKNEAVNTLIATLKNLYCP
>SC2849 ygbI, putative regulatory protein, deoR family
MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLEQQGAVI
QVSGGVQSSTRVAHEPSHQIKTELATPQKAAIGKLAASLVQPESCIYLDA
GTTTLAIARQLVTMNKLTVVTNDFVIADYLMDNSDCTIIHTGGTVCRENR
SCVGEAAATLLRGLMIDQAFISASSWSVRGISTPAEDKVTVKRAVASASR
QKILVCDATKYGQVATWLALPLAEFNQIVTDDGLPESAIRALAKVDISLL
MAKK
>SC0164 ygbI, putative transcriptional regulator (LysR family)
MKGQHRLDLIVAYLKNHTLVTVEQLVEAVDASPATIRRDLIKLDEQGVIS
RSHGGVALRRFEPAQPTTNEKQLRSPAEKRAIARVAASLVNAGDAVVLDA
GTTMMELAKCLTHLPLRVITVDLHIALFLSEFRQIEVTIVGGRIDDSSQS
CIGEHGRKLLRSVYPNIAFMSCNSWGVKTGVTTPTEDKAELKQEIIANAQ
RKVLLADSSKYGAHSLFNVVPLERFNDVITDVNLPPSAQVELKGRAFALT
LVQPE
>SC0378 ygiP, putative transcriptional regulator, LysR family
MKTTPVGKKHRQPLEGWPSVEDLFVFVTVARNGGFARAALELGLSPSYIS
KRIAILEKCLNARLFFRNNRVMRLTPEGENALCGAMQVVSEMDGFVSRLD
NQRGVLAGNITINCSFGFGHKYVAEALSSFMIAYPDITVKLTLTDREVDL
VEEGIDIEIRVGDDINELYIARQLATNRRILCASPEYLERHGKPESVSAL
VQHDCLMIQEKNSAFGNWILTDGKQQTHCRLNGFHSSNSGSVVLIWALKG
HGITLRSEWDVAQYIERGELVRVLPQWYQEANIWAVYTRRSSSSDRIKIC
IDFLTEHLAQCLPGGKAPGVL
>SC3119 ygiV, putative bacterial regulatory helix-turn-helix proteins, araC family
MNDLISAAYSERLRRVCDHIERHLDEPLSIEALSRMAHSSPFHFHRQFTT
WSGLPLYRYIQWLRLRRASWRLAFNPQDKVIDIALDAGFQNPESFTRAFK
TAFGQSPRRFRQSPDWLAWHQRVPKLALQEQHVMDVKIVEFPPTRVAMLT
HLGHPDKVNASAAKFIAWRRETGQSPIASSQTFGIAWHDPQTTPPDQFRF
DICGSVHQPIAENDVGVVNSEIPGGRCAVVRHQGSLDSLPESVWYLFREW
LPASGETLRDFPVFFQYLNFVNEVAEHELLTDIYLPLR
>SC3121 ygiX, putative transcriptional regulator (OmpR family)
MITFPFHVVSDPFNKVILNNFLRQKKNLFFCTSPAATRLTDGNASYRKEE
QMRILLVEDDTLIGDGIKAGLSKMGFSIDWFTEGRPGKEALYSAPYDAVI
LDLTLPGMDGRDILREWREKGKQEPVLILTARDALAERVEGLRLGADDYL
CKPFALIEVAARLEALVRRASGQASSELHHGQVTLNPGNLVATLAGEPLA
LKPKEFALLELLLRNKGRVLPRKLIEEKLYNWDDDVSSNAVEVHVHHLRR
KLGSEFIRTVHGIGYTLGDA
>SC3181 yhaJ, putative transcriptional regulator, LysR family
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELD
VVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLT
LVTEALVPTPAFFPLIDRLAAKANTQLSLITEVLAGAWERLEQGRADIVI
APDMHFRSSSEINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGV
AVADTARERPVLTVQLLDKQPRLTVSTIEDKRQELLAGLGVATMPYSMVE
QDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKAWCLREIPKLFAGK
>SC3278 yhcK, putative regulatory protein, gntR family
MDVMNAFDSQAEDSPTSLGRSLRRRPLARKKLSEMVEEELEQMIRRHEFG
EGEQLPSERELMAFFNVGRPSVREALAALKRKGLVQINNGERARVSRPSA
DTIISELSGMAKDFLTHPGGIAHFEQLRLFFESSLVRYAAEHATDEQIAL
LTKALEINSQSLDDNALFIRSDVEFHRVLAEIPGNPIFMAIHVALLDWLI
AARPSVPDRELHEHNNVSYQQHIVIVDAIRQRDPDKADRALQTHLNSVSA
TWHALGKKSQKMR
>SC3305 yhcS, putative transcriptional regulator, LysR family
MERLKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDELQVKLLN
RSTRSIGLTEAGKIYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSS
TMAQNVLAGLTAKLLKEYPGLAVNLVTGIPAPDLIADGLDVVIRVGALQD
SSLFSRRLGAMPMVVCAAKPYLAQYGVPEKPADLSSHSWLEYSVRPDNEF
ELIAPEGISTRLIPQGRFVTNDPMTLVRWLTAGTGIAYVPLMWVIDEINR
GDLEILLPRYQSDPRPVYALYTEKDKLPLKVQVVINALTDYFVDVAHLFQ
GMHGRGKEK
>SC3436 yhgF, paral putative RNase R
MMNDSFCRIIAGEIQANAGQVEAAVRLLDEGNTVPFIARYRKEITGGLDD
TQLRNLETRLGYLRELEDRRQAILKSISEQGKLTDELAGAINATLRKTEL
EDLYLPYKPKRRTRGQIAIEAGLEPLADLLWNEPSHDPDVEAAKYIDGDK
GVADTKAALDGARYILMERFAEDAALLAKVRDYLWKNAHLVATVVSGKEE
EGAKFRDYFDHHEPIANVPSHRALAMFRGRNEGILQLSLNADPQFDEPPK
ESYCEQIIMDHLGLRLNNAPADSWRKGVVSWTWRIKVLMHLETELMGTVR
ERAEDEAINVFARNLHDLLMAAPAGLRATMGLDPGLRTGVKVAVVDGTGK
LVATDTIYPHTGQAAKAATVIAALCEKYHVELVAIGNGTASRETERFYLD
VQKQFPNVTAQKVIVSEAGASVYSASELAAQEFPDLDVSLRGAVSIARRL
QDPLAELVKIDPKSIGVGQYQHDVSQTQLARKLDAVVEDCVNAVGVDLNT
ASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLKVSRLGPKAFEQC
AGFLRINHGDNPLDASTVHPEAYPVVERILAATQQALKDLMGNSNELRHL
KAADFTDDKFGVPTVSDIIKELEKPGRDPRPEFKTAQFADGVETMNDLLP
GMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLSNKFVDDPHTVVKAGDI
VKVKVLEVDLQRKRIALTMRLDEQPGETAARRGGAADRAQGNRPASKAAK
PRGRDAQPAGNSAMMDALAAAMGKKR
>SC3493 yhhK, putative acetyltransferase
MKLTILRLEHFSAQDQIDLGKIWPEYSASSLSVDETHRIYAARFNERLLG
AVRVTLSGTQGALNSLRVREITRRRGIGQYLVEEVIRDNPNVSSWWMADV
GVEDRSVMAAFMQALGFTAQHDGWEKR
>SC3476 yhhY, putative transferase
MSEIVIRHAEPKDYDAIRQIHAQPEVYHNTLQVPHPSLEMWQARLTEQAG
VKQLVACIDDIVVGHLSIQVTQRPRRSHVADFGICVDARWHNRGIASALI
RTMIDMCDNWLRVDRIELTVFVDNEPAVAVYKKYGFEIEGTGKKYGLRNG
EYVDAYFMARVK
>SC3540 yhjB, putative transcriptional regulator (LuxR/UhpA familiy)
MKISLQQHIPGISIQSVGQAEELWQKIESAPDALVMLDSGLDAEFCREVL
QRIAQQFPEVKIIITAMDGSQKWLHEVMQFNVQAVVPRDSDAETFVLALN
AVARGMMFLPGDWLNSTELESRDIKALSARQREILQMLAAGESNKQIGRA
LNISTGTVKAHLESLYRRLDVKNRTQAAMMLNESN
>SC3575 yiaC, putative acetyltransferase
MIRKSQSEDMASILALWMKSTIYAHPFIEERYWHESEAIVRDVYLPAAQT
WVWEENGQLKGFVSVLEARFVGALFVAPDALRHGIGKALLEYVQQRFPLL
SLEVYQKNQSAVNFYHALGFRIEDSAWQEDTAHPTWIMSWQADQTP
>SC3580 yiaG, putative transcriptional regulator
MEYKDPMFELLSSLEQIVFKDETRKITLTQKPNPFTEFEQLRRGTGLKTD
EFARALGVTVAMVQEWESKREKPTPAELKLMRLIQANPRLSKQLME
>SC3801 yieP, putative regulatory protein, gntR family
MPLSAQQLAAQKNLSYVLAEKLAQRILKGDYAPGTILPGEIELGEQYGVS
RTAVREAVKTLTAKGMVLPRPRIGTRVMPQGNWNFLDQELLTWWMTEENF
HQVVDHFLVMRISLEPQACLLAATLGTPEQKARLNALMEEMVALKKHFKR
ERWIEVDMAWHEHIYEMSANPFLISFATLFHSVYHTYFTSITYNEVVKLD
LHQAIVDAIADGDGERAFQACQALLIAPNERPDN
>SC3804 yifA, putative transcriptional regulator, LysR family
MESTVDTELLKTFLEVSRTRHFGRAAEALYLTQSAVSFRIRQLENQLGVN
LFTRHRNNIRLTTAGEKLLPYAETLMNTWQAARKEVAHTSRHNEFSIGAS
ASLWECMLNAWLGRLYQLQEPQSGLQFEARIAQRQSLVKQLHERQLDLLI
TTEAPKMDEFSSQLLGHFTLALYCSSPARKKSELNYLRLEWGPDFQQHET
GLIAADEVPVLTTSSAELARQQLSALNGCSWLPVNWANEKGGLHTVADSA
TLSRPLYAIWLQNSDKYSLICDLLKTDVLDEQ
>SC3915 yihW, putative glycerol-3-phosphate regulon repressor (DeoR family)
MSLTELTGNPRHDRLLMLIDERGYMNIDELASLLEVSTQTVRRDIRKLSE
QGLITRHHGGAGRASSVVNTAFEQREVSWTQEKKAIAEAVADYIPDGSTI
FITIGTTVEQVARALLNHNHLRIITNSLRVAHILYNNPRFEVMVPGGTLR
PHNSGIIGPSAAAFVAGFRADYLVTSVGAIESDGALLEFDVNEASVVKTM
MSHSRHILLAADHTKYHASAAVEIGNVSQITALFTDEYPGPALQNLLQSQ
QIEVVQVSPSLDDAVSA
>SC3919 yiiD, putative acetyltransferase
MSQLPAWPRITRESTAMYHLRVPQTEEELERYYQFRWEMLRKPLHQPKGS
ERDGWDALAHHQMVVDEEGNLVAVGRLYINADNEASIRFMAVHPSVQDKG
LGTLMAMTLESVARQEGVKRVTCSAREDAVEFFAKLGFVNQGEITTPTTT
PIRHFLMIKPVASLDDILHRGDWCGQLQQAWYEHIPLSEKMGVRIQQYTG
QKFITTMPETGNQNPHHTVFAGSLFSLATLTGWGLIWLMLRERHLGGTII
LADAHIRYSKPISGKPNAVADLGSLSGDLDRLARGKKARVQLQVELLGGE
TAGAIFEGIYIVLPAKPFGPYEEGGNEEE
>SC4016 yijC, putative transcriptional repressor (TetR/AcrR family)
MMGVRAQQKEKTRRSLVEAAFSQLSAERSFASLSLREVAREAGIAPTSFY
RHFRDVDELGLTMVDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFI
GNNPNAFRLLLRERSGTSAAFRAAVAREIQHFIAELADYLELENHMPRAF
TEAQAEAMVTIVFSAGAEALDIGAEQRRQLEERLVLQLRMIAKGAYYWYR
REQEKIAHHSE
>SC4007 yijO, paral putative regulator (AraC/XylS family)
MYHDVSHLLSRLINGPLPLRQIYFASASGPAPELAYQVDFPRLEIVLEGE
LTDMSITAPLIPCDVLYVPAGGWNIPQWQTPVTTLSILFGKQQLGFSVVH
WDGQQHQNLTKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLL
SHCRDLLGSQIQTASRSRALFEAIREYIDERYAAPLTRESVAQAFYISPN
YLSHLFQKTGAIGFNEYLNHTRLEHAKTLLKGYDLKVKEVAHRCGFVDSN
YFCRLFRKNTERSPSEYRRQYHSQLTEKQITPG
>SC3603 yisR, putative bacterial regulatory helix-turn-helix proteins, araC family
MLELSITLPIKVQNGGLFISRGIGRHPARRLQSWEIIFVEKGCLKIQEEE
CVFCVDAGESLLLWPHRRHIGVEEFPADLKFYWLHFEVKAPDSDPRWLTH
LSVPQHTQVADPQALIALFRQFMNEQEKHQRSPALEFIVLLILQQLTVDA
RQNENAEVAGVSLAWKVQQLIRTHYHLPLSSSVLAKELHCNVDYLGRVYR
RVFHLTLTEAIHRQRVREAEKLLISDARSLKEVAERCGFNDVGYFRQIFR
KHTGLTPTAWKRRYSKEHVNS
>SC4060 yjaB, putative acetyltransferase
MMINIRRSRHEEGEKLIAIWRRSVDATHDFLSNADRAELEELVSDFLPEA
PLWVAVTDQDEPVGFMLLTGEHMDALFVDPDVRGQGIGKRLVEHALTLAP
GLTTNVNEQNTQAVGFYKKMGFKVTGRSEVDDLGKPYPLLNLIYP
>SC4200 yjdC, putative bacterial regulatory protein, merR family
MQREDILGEALKLLETQGIADTTLEMVAERVNRPLDTLQRFWPDKEAILY
DALRYLSQQVDIWRRQLLLDESLSAEQKLLARYSALSECVSNNRYPGCLF
IAACTFYPDPTHPIHQLANQQKRAAHDFTHELLTTLEIDDPAMVARQMEL
VLEGCLSRMLVNRSQADVDTAQRLAEDILRFAQCRQGGALT
>SC4243 yjeB, putative negative regulator
MWLVYHQYKCIFPVFPFPEVDVQLTSFTDYGLRALIYMASLPDGRMTSIS
EVTEVYGVSRNHMVKIINQLSRAGFVTAVRGKNGGIRLGKPANTICIGDV
VRELEPLSLVNCSSEFCHITPACRLKQALSKAVQSFLKELDNYTLADLVE
ENQPLYKLLLVE
>SC4255 yjfQ, putative transcriptional repressor (DeoR family)
MTEAQRHQILLDMLAQLGFVTVENVIERLGISPATARRDINKLDESGKLK
KVRNGAEAITQQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNPGESVVIN
CGSTAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQS
ITLSPQGSENSLYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGK
LVALVDSSKIGERAGMLFSRADQIAMLITGKNANPQVLQQLEAQGVSILR
V
>SC1671 yjgC, putative transcriptional regulator, LysR family
MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWLRIQLLQ
RTTRKLSVTAEGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQ
SLARHCIIPTLPAFLRQYPELELILCSSDSVEDIILQGYDCVIRAGRIDD
STTLVARPLASFNWVIAASPTYIERYGSPENLDDLQKHHAVGYLNHRTGR
TTDWFFTREGEDYAMRVQETLVVDDTDAYIQAGIQGLGLIRVASYLVAPY
LHSGALVTCMDNHFYDLPLALVYPQNRFLPPAVRAFYDWCKTALSQPEPL
R
>SC1668 yjgJ, putative bacterial regulatory helix-turn-helix proteins, araC family
MTTKHSRTPGRPRQFDPEQAIETAQHLFHSRGYDAVSVADLTKAFGINPP
SFYAAFGSKLGLYTRVLKRYRMTDAIPLGALLRHDRPTAKCLIDVLMDAA
RRYAADPDATGCLVLEGAHCNDKPAREAACEFYIAAENLIRTYVAMRYPQ
EADRTTDFMGTLMAGLSAKARAGYGLERLQESVLLAGDVLERLLPD
>SC4329 yjgM, putative acetyltransferase
MSHIMNNVASPTLTVRRITTADNAAIARVIRQVSAEYGLTADKGYTVADP
NLDELYQVYSQPGAAYWVVEQNGCVVGGGGVAPLSCSEPDICELQKMYFL
PVISGQGLAKKLALMALEHAREQGFKRCYLETTAFLREAIALYERLGFEH
ISEPLGCTGHVDCEVRMLKDL
>SC4366 yjiE, putative transcriptional regulator, LysR family
MDVTGAGLHNIETKWLYDFLTLEKCRNFSQAAIIRNVSQPAFSRRIRALE
HAVGVELFNRQVSPLQLSEQGKIFHSQVRHLLQQLESNLTELRGGSDYTL
RKIKIAAAHSLSLGLLPTIVKQMPTQFTYAVEAIDVDQAVDMLREGQSDF
IFSYHDENLQQAPFDNIRLFESRLFPVCANNGRGEPRYTLEQPHFPLLNY
SQNSYMGRLINRTLTRHAELSFSTSFVSSMSELLKQVAMDGCGIAWLPEY
AVRQEITDGRLIVLDADELVIPIQAYAYRMNTRMSQVAETFWRDLRGLQA
AL
>SC0600 ykgD, putative transcriptional regulator (AraC/XylS family)
MDALSRLLTLNAPQGSIDKNCPLGGDWQLPHAAGELSVIRWHTVTQGEAQ
LEMPTGDAMTLTPGKVVILPQNSAHRLRQSGEAPTHIVCGSLRLHTTSRY
FLTALPEVLCLAPPPHSPASIWLNAAILLLQQESEHHLPGADVLYSQQCA
TLFTLAVRDWLSQAGTAKSVLNLLLHPRLGRVILHMLETPAHPWTVETLA
QRVHMSRASFAQLFRDVSATTPLAVLTTLRLQIAAQTLSREALPVMVIAE
SVGYASESSFHKAFVREFGCTPGEYRKRANALGR
>SC0762 ymbI, transcriptional regulator, lysR family
MEIRQLEYFVSASLLGNLTRVAERHFVSQPNITIAIKKLETELGVTLFDR
KKNKLVLTEEGMFFLQKIEPILIALKNSVAEMKDYRNENGGIVTLGIPPM
ISLFLFSPLFKHFREIYPEMELSLVEEGTFGLHDKLSAGELDLAIVIIND
CPKELVTVPLMTQQHVVCMSDKHPLAKKDSIDWEDPQYEPLILMKKDSWH
RKTIIEECTKRGIHTHIFLSSNRIQTNIDLVAKNEGISFILDAVDLKAEK
VITKAMTEPTYVTIGLAWKKDKYLSYATRALIKFIEDYIKEHFTIK
>SC1505 ynfL, putative transcriptional regulator, LysR family
MNIELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQILEQQVGARLL
ARTNRSVALTAAGRQFLVDSRHILSLVNDAAARAERLHQGEAGEIRIGFT
SSAPFIRAVSHTFSLFRQSYPGVHMQTREMNTREQIAPLNEGVLDIGLLR
NTPLPDTLNREVILHEPLMAMIPREHRLAQKPVVSLTELAEEPFVFFDPH
VGTGLYDDILGLMRRYNLSPTITQEVGEAMTIIGLVAAGLGVSILPASFK
RVQMSEMRWVPLAEEDAVSEMWLVWPKHHEQSHAVQRFCQLLLLAARRD
>SC1815 yoaA, putative DNA helicase
MTDDFAADGQLAKAITGFKPREPQRQMAVAVTQAIENAQPLVVEAGTGTG
KTYAYLAPALRAGKKVIISTGSKALQDQLYSRDLPTVAKALAFTGKTALL
KGRSNYLCLERLEQQALAGGDLPVQTLSDVILLRSWSNQTRDGDISTCVS
VAEDSQAWPLVTSTNDNCLGSDCPLYKECFVVKARKKAMDADVVIVNHHL
FLADMVVKESGFGELIPQAEVMIFDEAHQLPDIASQYFGQSLSSRQLLDL
AKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA
DSRIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRSRLKRLK
EINQPGYSYWYECTSRHFTLALTPLTVADKFKEVMEQKPGSWIFTSATLS
VNDDLHHFTARLGIEQAESMLLPSPFDYTRQALLCVPRNLPQTNQPGAAR
QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSK
GQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLL
KARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR
LVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSAE
>SC3036 yqgE, Protein yqgE
MTTVRFPHILNAVVFLNQETEPLTMNLQHHFLIAMPALQDPIFRRSVVYI
CEHNQDGAMGIIVNKPLENLQIEGILEKLKITPEPRDSAIRLDKAVMLGG
PLAEDRGFILHTPPSRFASSIRISDNTVITTSRDVLETLGTQQQPSDVLV
ALGYASWDKGQLEQELLDNAWLTAPADLNILFKTPIAERWREAAKLIGID
ILTMPGVAGHA
>SC3107 yqhC, putative transcriptional regulator (AraC/XylS family)
MMKKWRVMNREAICLQLADKINHLKNNDKIISERLAGIRLLYGVEPGPCT
PVMYQPGIIFLFSGHKIGYINKRKFRYDANEYLLLTVPLPFECETWATPE
VPLAGIRLDIDVLQLQELLMDIGEDERFQLPMAASGINSATLSDEILCAV
ERLLDVMERPLDERILGKQIIREILYHVLMGPRGGALLALVSRQTHFSLI
SRVLKQIEMKYTENLNVEQLAAEANMSVSAFHHNFKAVTSTSPLQYLKSY
RLHKARMMMIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDAARM
RTMQGS
>SC0681 yqiR, putative sigma-54 dependent transcriptional regulator
MNKTKDIAASPLCFVSPYPQLAKAAEALVAQLDYAVTIHQTTLNRILDEL
PLLESRGHQVLISRGGCAEILKKHSKLPVVEIKMSGYDILDALIPFKGQK
GTVGIVGFSSVIKGCARVAEQLNINYKIFTLQGNDKETISCLKQQLASTP
LDCIVGDTVCQDYFSPLGSQFRLLDSSPASITEALEEARSLYLAFRSQLL
ERHHLQLILDQFDKAVITLDDTGALLHYNKYASQLFKVNASGEIYDASFL
KQVLLQERHTLREGKTVSAKVVDTPQGAMVVNLYPVFAARQLSRVVLTMQ
TVSSLQGAEHHVRRQELSRRGLSARYHFDDLLTENPEMLRRLAIIKNYAG
TDATILINGESGTGKEVLAQSIHNASQRVNGPFVAINCGAMAPQILESEL
FGYVAGAFTGASPKGKIGLFELAHHGTIFLDEISELDKPLQTRLLWVLQE
RQIMRLGSDQMIPVDIRVIAATNQTLTKLIADGTFREDLYYRLNVLKVTT
IPLRKRPEDIKAIGLSLLTSFSQHYKRPALTLTPALWQELQRFAWPGNVR
QLSNIIERLVLSIDHSPATLDEGRLLLDDLEEGSRREPNTCHDCQMLAGD
YKTIRLRILRKLLEAERDNKSLVAKRLNVDRTSLTRWIRESA
>SC3246 yrbA, putative transcriptional regulator (BolA family)
MLGCFHYLTNKEPMENHEIQSVLMNALSLQEVHVSGDGSHFQVIAVGEMF
DGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRKLNGF
>SC4277 ytfH, putative transcriptional regulator
MRAHTLSRQLREGNLFAEQCPSREVLKHVTSRWGVLILVALRDGTHRFSD
LRRKMGGVSEKMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVS
DKVAALADWIELNLSQVLAQRDRLSDGG
>SC3536 yurK, putative regulatory protein, gntR family
MIEQPDSKSAKPLYKQLEDALKEAIARGEYKPGQQIPTENELSVRWQVSR
VTVRKALDALTRENLLTRVSGKGTFVSGEKFQRSMTGIMSFSELCQSQGR
RPGSRTIKSVFESVDDETKALLNMNDGEKAVVIERIRYADDVAVSLETVH
LPPRFAFLLDEDLNNHSLYECLREKYHLWFTHSRKMIELVYASFEVAHYL
GVNEGYPLILTKSEMIDNKGELSCVSQQLIVGDKIRFTV
>SC2284 yvbU, putative transcriptional regulator, LysR family
MTLTQIHALLAVLEYGGFTEASKRLYMTQSAVSQAISALEEELGVDILIR
ERRKEIELTAAGSRIVRHLRAIQRDVNAVKEIAEQEKKNPARTLRIGCFP
SACACILPGVIRYFESHHPNVKIIPYEENSTAIIDSLQDGSIDAGFVPFP
VNGMYCVPIYRDKFTVVVPENHPLAANSTVTVEELMDEPLIVSKGRYELS
IMALFKEKGIEPIFKYEFNHPDTALNFIRQGLGIALLPELTLKATTGKLC
SVALEPTFYRQISLLAKKPPVEGSPLFLLQKCMETLTDEGLL
>SC4149 ywbI, putative transcriptional regulator, LysR family
MDIRTLRYFVEVVRQQSFTRAAEKLFVTQPTISKMLKNLEDELNCTLLIR
DGRKLLLTDTGRVVFERGLAILAEFRQLEAELSDINHLNKGVLRLGIPPM
VGMLMAGPISLFRQRYPGVELKISEFGGLTVQQAVMNGELDVAMTALPVE
EASGLTTLSLFSHPLCVLVPRSGQWTTCDSIAPEALAEHPLLIYNEDFAL
SRQLMTLFSQHDVKPRIAVRSGQWDFLAAMVQAGVGIAILPEPICQRLDK
ATLRWLPLESDLRWQLGMIWREGVYLSHSARAWLTCCEGFWLKQP
>SC0854 ywfK, putative transcriptional regulator, LysR family
MSAASGSVRIRNLEQSINLRLLYRSSKGITLSSAGETFKHHASLIVNQME
MLRSDMQEHVKGIKGHVRIFSSITAIAEYLPPLLSHFLTLYNDVNIDLRE
YPSPEIVRSVIEGKTDLGIVAGNITTDNLEILPFRTDRLVLITATDHPFA
DRKSVTFHELIQYEQISLPEGTGMFEFIRKKAELVPSKLKIRIQVGNFET
FCRMVEAKVGIGIMP
>SC3347 zntR, Zn(II)-responsive transcriptional regulator (MerR family)
MYRIGELAKLADVTPDTIRYYEKQQMMDHEVRTEGGFRLYTENDLQRLKF
IRYARQLGFTLESIRELLSIRIDPEHHTCQESKSIVQERLQEVEARIAEL
QTMQRSLQRLNDACCGTAHSSVYCSILEALEQGASGAKSGC