Gene list
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COG category: Transcription
Organism: Phage Gifsy-1
Number of genes found: 333
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| Phage Gifsy-1 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | SC0387 | putative response regulator | SubName: Full=Putative response regulator; | chromosome | CDS | 433323 | 744 | + | 0.401882 |
| NA | SC0390 | putative response regulator | SubName: Full=Putative response regulator; | chromosome | CDS | 435596 | 642 | + | 0.400312 |
| NA | SC3697 | putative helix-turn-helix protein | SubName: Full=Putative helix-turn-helix protein; | chromosome | CDS | 3917580 | 324 | + | 0.484568 |
| NA | SC0973 | putative regulator | SubName: Full=Putative regulator; | chromosome | CDS | 1092304 | 468 | - | 0.463675 |
| NA | SC2959 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 3140650 | 348 | - | 0.571839 |
| NA | SC1276 | putative response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain | SubName: Full=Putative response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; | chromosome | CDS | 1379099 | 648 | + | 0.368827 |
| NA | SC1411 | putative regulatory proteins, merR family | SubName: Full=Putative regulatory proteins, merR family; | chromosome | CDS | 1513003 | 729 | - | 0.539095 |
| NA | SC3923 | putative bacterial regulatory protein, merR family | SubName: Full=Putative bacterial regulatory protein, merR family; | chromosome | CDS | 4174993 | 291 | + | 0.443299 |
| NA | SC3494 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3687647 | 519 | - | 0.499037 |
| NA | SC2634 | putative DNA-binding protein | SubName: Full=Putative DNA-binding protein; | chromosome | CDS | 2786704 | 420 | + | 0.461905 |
| NA | SC1201 | putative replication protein | SubName: Full=Putative replication protein; | chromosome | CDS | 1316708 | 819 | + | 0.492063 |
| NA | SC3585 | putative acetyltransferase | SubName: Full=Putative acetyltransferase; | chromosome | CDS | 3789830 | 486 | - | 0.49177 |
| NA | SC0404 | putative transcription regulator, AraC family | SubName: Full=Putative transcription regulator, AraC family; | chromosome | CDS | 456055 | 1005 | + | 0.579104 |
| NA | SC1242 | Hypothetical protein HI1418 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1351955 | 294 | + | 0.489796 |
| NA | SC0452 | putative regulatory protein | SubName: Full=Putative regulatory protein; | chromosome | CDS | 510188 | 693 | + | 0.526696 |
| NA | SC0958 | putative leucine response regulator | SubName: Full=Putative leucine response regulator; | chromosome | CDS | 1078356 | 462 | - | 0.489177 |
| NA | SC3295 | putative regulatory protein, gntR family | SubName: Full=Putative regulatory protein, gntR family; | chromosome | CDS | 3480005 | 666 | - | 0.496997 |
| NA | SC3296 | putative regulatory protein, gntR family | SubName: Full=Putative regulatory protein, gntR family; | chromosome | CDS | 3480657 | 630 | - | 0.488889 |
| NA | SC1575 | putative transcriptional regulator, TetR family | SubName: Full=Putative transcriptional regulator, TetR family; | chromosome | CDS | 1672235 | 579 | + | 0.564767 |
| NA | SC4090 | unknown | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4367690 | 318 | - | 0.550314 |
| NA | SC0611 | putative regulatory protein | SubName: Full=Putative regulatory protein; | chromosome | CDS | 680699 | 582 | - | 0.532646 |
| NA | SC2588 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2756765 | 786 | - | 0.480916 |
| NA | SC4381 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4687837 | 816 | - | 0.573529 |
| NA | SC2700 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2864363 | 987 | + | 0.401216 |
| NA | SC2834 | putative acetyltransferase | SubName: Full=Putative acetyltransferase; | chromosome | CDS | 2999519 | 528 | + | 0.471591 |
| NA | SC4121 | putative outer membrane or exported | SubName: Full=Putative outer membrane or exported; | chromosome | CDS | 4397180 | 1311 | + | 0.519451 |
| NA | SC3932 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 4185835 | 615 | + | 0.570732 |
| NA | SC0017 | putative protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 17044 | 318 | - | 0.402516 |
| NA | SC3752 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 3977063 | 789 | + | 0.542459 |
| NA | SC3038 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 3218619 | 717 | - | 0.555091 |
| NA | SC2211 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 2314803 | 390 | - | 0.520513 |
| NA | SC2589 | putative bacteriophage protein | SubName: Full=Putative bacteriophage protein; | chromosome | CDS | 2757615 | 564 | - | 0.432624 |
| NA | SC4190 | putative bacterial regulatory proteins, luxR family | SubName: Full=Putative bacterial regulatory proteins, luxR family; | chromosome | CDS | 4494556 | 288 | - | 0.298611 |
| NA | SC1200 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1314348 | 309 | - | 0.495146 |
| NA | SC3605 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 3812266 | 882 | + | 0.566893 |
| NA | SC1869 | putative DNA-binding protein | SubName: Full=Putative DNA-binding protein; | chromosome | CDS | 1982079 | 396 | - | 0.517677 |
| NA | SC2951 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 3131265 | 1113 | + | 0.572327 |
| RPOZ | SC3665 | DNA-directed RNA polymerase omega chain | RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega; | chromosome | CDS | 3876076 | 276 | + | 0.536232 |
| aac6 | SC1615 | cryptic aminoglycoside resistance gene | RecName: Full=Aminoglycoside N(6)-acetyltransferase type 1; EC=2.3.1.82; AltName: Full=Aminoglycoside resistance protein; | chromosome | CDS | 1720515 | 438 | + | 0.518265 |
| adiY | SC4174 | transcriptional activator of adiA (AraC/XylS family) | SubName: Full=Transcriptional activator of adiA (AraC/XylS family); | chromosome | CDS | 4472181 | 762 | - | 0.434383 |
| agrR | SC4317 | putative arginine repressor | RecName: Full=Arginine repressor; | chromosome | CDS | 4619085 | 489 | - | 0.476483 |
| allR | SC0557 | putative regulatory protein | RecName: Full=HTH-type transcriptional repressor AllR; AltName: Full=Negative regulator of allantoin and glyoxylate utilization operons; | chromosome | CDS | 620921 | 819 | + | 0.550672 |
| araC | SC0098 | transcriptional regulator (AraC/XylS family) for ara operon | SubName: Full=Transcriptional regulator (AraC/XylS family) for ara operon; | chromosome | CDS | 115653 | 846 | + | 0.537825 |
| arcA | SC4443 | response regulator (OmpR family) in two-component regulatory system with ArcB (or CpxA), regulates genes in aerobic pathways | SubName: Full=Response regulator (OmpR family) in two-component regulatory system with ArcB (Or CpxA), regulates genes in aerobic pathways; | chromosome | CDS | 4753638 | 717 | - | 0.523013 |
| argR | SC3298 | repressor of arg regulon (ArgR familiy) | RecName: Full=Arginine repressor; | chromosome | CDS | 3482759 | 471 | + | 0.501062 |
| asnC | SC3789 | transcriptional regulator (AsnC family) for asnA, gidA | SubName: Full=Transcriptional regulator (AsnC family) for asnA, gidA; | chromosome | CDS | 4019754 | 459 | - | 0.503268 |
| baeR | SC2133 | response regulator in two-component regulatory system with BaeS (OmpR family) | SubName: Full=Response regulator in two-component regulatory system with BaeS (OmpR family); | chromosome | CDS | 2237007 | 723 | + | 0.544952 |
| basR | SC4171 | response regulator in two-component regulatory system with BasS (OmpR family) | SubName: Full=Response regulator in two-component regulatory system with BasS (OmpR family); | chromosome | CDS | 4468262 | 669 | - | 0.533632 |
| bglJ | SC4400 | transcriptional regulator (activator) of bgl operon (LuxR/UhpA family) | SubName: Full=Transcriptional regulator (Activator) of bgl operon (LuxR/UhpA family); | chromosome | CDS | 4709112 | 675 | + | 0.491852 |
| bls | SC1855 | putative acetyltransferase | SubName: Full=Putative acetyltransferase; | chromosome | CDS | 1970940 | 420 | - | 0.419048 |
| budR | SC2570 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 2741188 | 927 | + | 0.429342 |
| cadC | SC2552 | transcriptional activator of cad operon (OmpR family) | SubName: Full=Transcriptional activator of cad operon (OmpR family); | chromosome | CDS | 2717238 | 1545 | + | 0.473786 |
| cafR | SC1665 | putative bacterial regulatory helix-turn-helix proteins, araC family | SubName: Full=Putative bacterial regulatory helix-turn-helix proteins, araC family; | chromosome | CDS | 1777523 | 858 | + | 0.384615 |
| cdaR | SC0210 | putative inner membrane protein | SubName: Full=Putative inner membrane protein; | chromosome | CDS | 242185 | 1158 | + | 0.548359 |
| cdaR | SC2489 | putative regulatory protein | SubName: Full=Putative regulatory protein; | chromosome | CDS | 2622528 | 1182 | - | 0.494924 |
| celD | SC1336 | transcriptional repressor of cel operon (AraC/XylS family) | SubName: Full=Transcriptional repressor of cel operon (AraC/XylS family); | chromosome | CDS | 1432640 | 843 | + | 0.434164 |
| celR | SC3566 | putative bacterial regulatory proteins, lacI family | SubName: Full=Putative bacterial regulatory proteins, lacI family; | chromosome | CDS | 3770037 | 1008 | + | 0.59623 |
| citB | SC0046 | putative transcription regulator sensor for citrate | RecName: Full=Transcriptional regulatory protein; | chromosome | CDS | 55360 | 687 | - | 0.483261 |
| cobB | SC1171 | putative nicotinate-nucleotide dimethylbenzimidazolephosphoribosltransferase, homolog of virulence factor | RecName: Full=NAD-dependent protein deacylase; EC=3.5.1.-; AltName: Full=Regulatory protein SIR2 homolog; | chromosome | CDS | 1288138 | 822 | + | 0.527981 |
| copR | SC1046 | Copper resistance; transcriptional regulatory protein | SubName: Full=Copper resistance transcriptional regulatory protein; | chromosome | CDS | 1163061 | 747 | - | 0.506024 |
| cpxR | SC3950 | response reguator in two-component regulatory system with CpxA, regulates expression of protein folding and degrading factors (OmpR family) | SubName: Full=Response reguator in two-component regulatory system with CpxA, regulates expression of protein folding and degrading factors (OmpR family); | chromosome | CDS | 4202789 | 699 | - | 0.543634 |
| creB | SC4433 | response regulator in two-component regulatory system with CreC (OmpR family) | SubName: Full=Response regulator in two-component regulatory system with CreC (OmpR family); | chromosome | CDS | 4742501 | 690 | + | 0.581159 |
| cro | SC0339 | regulatory protein cro (Antirepressor) | SubName: Full=Regulatory protein cro (Antirepressor); | chromosome | CDS | 383603 | 216 | + | 0.462963 |
| csgD | SC1090 | putative transcriptional regulator (LuxR/UhpA family) | SubName: Full=Putative transcriptional regulator (LuxR/UhpA family); | chromosome | CDS | 1209813 | 651 | - | 0.407066 |
| csiE | SC2547 | stationary phase inducible protein | SubName: Full=Stationary phase inducible protein; | chromosome | CDS | 2711681 | 1278 | + | 0.549296 |
| cspA | SC3581 | Cold shock protein cspA (CSP-A) | SubName: Full=Cold shock protein cspA (CSP-A); | chromosome | CDS | 3787219 | 213 | + | 0.474178 |
| cspB | SC1999 | putative cold-shock protein | SubName: Full=Putative cold-shock protein; | chromosome | CDS | 2100782 | 411 | - | 0.403893 |
| cspC | SC1831 | Cold shock-like protein cspC | SubName: Full=Cold shock-like protein cspC; | chromosome | CDS | 1950723 | 210 | - | 0.471429 |
| cspD | SC0898 | CspA-like protein | SubName: Full=CspA-like protein; | chromosome | CDS | 1006824 | 222 | - | 0.518018 |
| cspE | SC0658 | RNA chaperone, negative regulator of cspA transcription | SubName: Full=RNA chaperone, negative regulator of cspA transcription; | chromosome | CDS | 735432 | 240 | + | 0.420833 |
| cspH | SC1254 | cold shock protein-like protein | SubName: Full=Cold shock protein-like protein; | chromosome | CDS | 1362466 | 213 | - | 0.469484 |
| cueR | SC0540 | putative heavy metal transcriptional repressor (MerR family) | SubName: Full=Putative heavy metal transcriptional repressor (MerR family); | chromosome | CDS | 604913 | 417 | + | 0.527578 |
| cysB | SC1710 | transcriptional regulator for cysteine regulon (LysR familiy) | SubName: Full=Transcriptional regulator for cysteine regulon (LysR familiy); | chromosome | CDS | 1821538 | 975 | - | 0.518974 |
| cytR | SC3983 | transcriptional repressor (GalR/LacI family) | SubName: Full=Transcriptional repressor (GalR/LacI family); | chromosome | CDS | 4235241 | 993 | - | 0.538771 |
| dbpA | SC1650 | ATP-dependent RNA helicase, stimulated by 23S rRNA | RecName: Full=ATP-dependent RNA helicase DbpA; EC=3.6.4.13; | chromosome | CDS | 1761471 | 1374 | - | 0.547307 |
| dcuR | SC4181 | response regulator in two-component regulatory system with DcuS, regulates anaerobic fumarate respiration | RecName: Full=Transcriptional regulatory protein; | chromosome | CDS | 4483711 | 720 | - | 0.491667 |
| deaD | SC3221 | cysteine sulfinate desulfinase | RecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; | chromosome | CDS | 3402212 | 1956 | - | 0.576176 |
| deoR | SC0858 | transcriptional repressor for deoxyribose operon (DeoR family) | SubName: Full=Transcriptional repressor for deoxyribose operon (DeoR family); | chromosome | CDS | 964491 | 759 | - | 0.517787 |
| deoR | SC3714 | putative regulatory protein, deoR family | SubName: Full=Putative regulatory protein, deoR family; | chromosome | CDS | 3934491 | 786 | + | 0.519084 |
| dgoR | SC3748 | galactonate operon transcriptional repressor (GntR family) | SubName: Full=Galactonate operon transcriptional repressor (GntR family); | chromosome | CDS | 3972263 | 690 | - | 0.536232 |
| dinG | SC0818 | LexA regulated (SOS) repair enzyme | RecName: Full=Probable ATP-dependent helicase DinG; EC=3.6.4.12; AltName: Full=DNA-damage-inducible protein G; | chromosome | CDS | 915751 | 2145 | + | 0.545455 |
| dpiA | SC0656 | response regulator in two-component regulatory system with DpiB, transcriptional regulation of cit operon (citrate fermentation) genes and of plasmid | RecName: Full=Transcriptional regulatory protein; | chromosome | CDS | 732340 | 549 | + | 0.537341 |
| dsdC | SC3722 | transcriptional activator (LysR family) | SubName: Full=Transcriptional activator (LysR family); | chromosome | CDS | 3941604 | 939 | - | 0.531416 |
| ecnR | SC4216 | putative bacterial regulatory protein, luxR family | SubName: Full=Putative bacterial regulatory protein, luxR family; | chromosome | CDS | 4515357 | 645 | - | 0.458915 |
| emrR | SC2747 | transcriptional repressor of emrAB operon (MarR family) | SubName: Full=Transcriptional repressor of emrAB operon (MarR family); | chromosome | CDS | 2915805 | 531 | + | 0.487759 |
| envR | SC3326 | transcriptional repressor for envCD (acrEF) (TetR/AcrR family) | SubName: Full=Transcriptional repressor for envCD (AcrEF) (TetR/AcrR family); | chromosome | CDS | 3514763 | 663 | - | 0.434389 |
| eutR | SC2453 | putative regulator ethanolamine operon (AraC/XylS family) | SubName: Full=Putative regulator ethanolamine operon (AraC/XylS family); | chromosome | CDS | 2578663 | 1053 | - | 0.540361 |
| fadR | SC1798 | negative regulator for fad regulon and positive activator of fabA (GntR family) | RecName: Full=Fatty acid metabolism regulator protein; | chromosome | CDS | 1921062 | 744 | - | 0.520161 |
| farR | SC3959 | putative regulatory protein, gntR family | SubName: Full=Putative regulatory protein, gntR family; | chromosome | CDS | 4212063 | 723 | + | 0.511757 |
| farR | SC3706 | putative regulatory protein, gntR family | SubName: Full=Putative regulatory protein, gntR family; | chromosome | CDS | 3924106 | 744 | - | 0.405914 |
| fhlA | SC2792 | formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons (EBP family) | SubName: Full=Formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons (EBP family); | chromosome | CDS | 2958009 | 2190 | + | 0.544749 |
| fimW | SC0590 | putative fimbrial protein | SubName: Full=Putative fimbrial protein; | chromosome | CDS | 658397 | 597 | - | 0.41206 |
| fimZ | SC0588 | fimbrial protein Z, putative transcriptional regulator (LuxR/UhpA family) | SubName: Full=Fimbrial protein Z, putative transcriptional regulator (LuxR/UhpA family); | chromosome | CDS | 655946 | 726 | - | 0.409091 |
| fis | SC3323 | DNA-binding protein fis | RecName: Full=DNA-binding protein Fis; | chromosome | CDS | 3510997 | 297 | + | 0.464646 |
| flgM | SC1119 | anti-FliA (anti-sigma) factor; also known as RflB protein | SubName: Full=Anti-FliA (Anti-sigma) factor also known as RflB protein; | chromosome | CDS | 1237100 | 294 | - | 0.517007 |
| fliA | SC1960 | sigma F (sigma 28) factor of RNA polymerase, transcription of late flagellar genes (class 3a and 3b operons) | RecName: Full=RNA polymerase sigma factor FliA; AltName: Full=RNA polymerase sigma factor for flagellar operon; AltName: Full=Sigma F; AltName: Full=Sigma-28; | chromosome | CDS | 2067212 | 720 | - | 0.548611 |
| fruR | SC0115 | transcriptional repressor of fru operon and others (GlaR/LacI family) | SubName: Full=Transcriptional repressor of fru operon and others (GlaR/LacI family); | chromosome | CDS | 132669 | 1005 | + | 0.565174 |
| fucR | SC2919 | positive regulator of the fuc operon (DeoR family) | SubName: Full=Positive regulator of the fuc operon (DeoR family); | chromosome | CDS | 3091697 | 711 | + | 0.496484 |
| gadR | SC3203 | transcriptional regulator of sugar metabolism | SubName: Full=Transcriptional regulator of sugar metabolism; | chromosome | CDS | 3387496 | 774 | + | 0.502584 |
| galR | SC2950 | transcriptional repressor of galETK operon (GalR/LacI family) | SubName: Full=Transcriptional repressor of galETK operon (GalR/LacI family); | chromosome | CDS | 3130316 | 1029 | + | 0.56171 |
| galS | SC2207 | transcriptional repressor of mgl operon (GalR/LacI family) | SubName: Full=Transcriptional repressor of mgl operon (GalR/LacI family); | chromosome | CDS | 2310628 | 1023 | - | 0.557185 |
| gbpR | SC2197 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 2299396 | 909 | + | 0.544554 |
| gcvA | SC2922 | regulator of gcv operon (LysR family) | SubName: Full=Regulator of gcv operon (LysR family); | chromosome | CDS | 3093973 | 918 | - | 0.506536 |
| glpR | SC3454 | transcriptional repressor of the glp operon (DeoR family) | SubName: Full=Transcriptional repressor of the glp operon (DeoR family); | chromosome | CDS | 3639748 | 759 | - | 0.540184 |
| gntR | SC2346 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 2471794 | 1020 | + | 0.555882 |
| gntR | SC3473 | transcriptional repressor gnt-I, gntUKR (GalR/LacI familiy) | SubName: Full=Transcriptional repressor gnt-I, gntUKR (GalR/LacI familiy); | chromosome | CDS | 3665471 | 1062 | - | 0.56403 |
| greA | SC3237 | transcription elongation factor, cleaves 3' nucleotide of paused mRNA | RecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; | chromosome | CDS | 3422670 | 477 | - | 0.509434 |
| greB | SC3435 | transcription elongation factor and transcript cleavage | RecName: Full=Transcription elongation factor GreB; AltName: Full=Transcript cleavage factor GreB; | chromosome | CDS | 3614045 | 474 | + | 0.514768 |
| gutM | SC2769 | putative glucitol (srl) operon regulatory protein | SubName: Full=Putative glucitol (Srl) operon regulatory protein; | chromosome | CDS | 2935493 | 360 | + | 0.55 |
| hcrR | SC2850 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 3016226 | 405 | - | 0.530864 |
| hepA | SC0091 | RNA polymerase associated protein, putative SNF2 family RNA helicase | RecName: Full=RNA polymerase-associated protein RapA; EC=3.6.4.-; AltName: Full=ATP-dependent helicase HepA; | chromosome | CDS | 104220 | 2907 | - | 0.570691 |
| hilA | SC2808 | invasion genes transcription activator | SubName: Full=Invasion genes transcription activator; | chromosome | CDS | 2973384 | 1662 | + | 0.431408 |
| hilC | SC2799 | bacterial regulatory helix-turn-helix proteins, araC family | SubName: Full=Bacterial regulatory helix-turn-helix proteins, araC family; | chromosome | CDS | 2965634 | 888 | - | 0.369369 |
| hilD | SC4191 | putative AraC-type DNA-binding domain-containing protein | SubName: Full=Putative AraC-type DNA-binding domain-containing protein; | chromosome | CDS | 4494840 | 876 | - | 0.347032 |
| hilD | SC2807 | regulatory helix-turn-helix proteins, araC family | SubName: Full=Regulatory helix-turn-helix proteins, araC family; | chromosome | CDS | 2971363 | 930 | + | 0.408602 |
| hmrR | SC0395 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 445402 | 465 | + | 0.544086 |
| hpaA | SC1058 | 4-hydroxyphenylacetate catabolism | SubName: Full=4-hydroxyphenylacetate catabolism; | chromosome | CDS | 1174836 | 897 | + | 0.520624 |
| hpaR | SC1050 | 4-hydroxyphenylacetate catabolism | SubName: Full=4-hydroxyphenylacetate catabolism; | chromosome | CDS | 1166930 | 441 | - | 0.52381 |
| hthR | SC1078 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 1194574 | 882 | - | 0.496599 |
| hutC | SC0787 | histidine utilization repressor | SubName: Full=Histidine utilization repressor; | chromosome | CDS | 882722 | 678 | + | 0.564897 |
| hypB | SC2788 | hydrogenase-3 accessory protein, assembly of metallocenter | SubName: Full=Hydrogenase-3 accessory protein, assembly of metallocenter; | chromosome | CDS | 2954638 | 873 | + | 0.573883 |
| iciA | SC3005 | inhibitor of replication initiation, also transcriptional regulator of dnaA and argK (LysR family) | RecName: Full=Chromosome initiation inhibitor; AltName: Full=OriC replication inhibitor; | chromosome | CDS | 3183761 | 894 | + | 0.579418 |
| iclR | SC4066 | acetate operon transcriptional repressor (IclR family) | SubName: Full=Acetate operon transcriptional repressor (IclR family); | chromosome | CDS | 4340560 | 825 | - | 0.585455 |
| idnR | SC4337 | L-idonate regulator (GalR/LacI family) | SubName: Full=L-idonate regulator (GalR/LacI family); | chromosome | CDS | 4638707 | 999 | - | 0.503504 |
| ilvY | SC3813 | positive regulator for ilvC (LysR family) | SubName: Full=Positive regulator for ilvC (LysR family); | chromosome | CDS | 4051454 | 888 | - | 0.583333 |
| invF | SC2831 | invasion protein | SubName: Full=Invasion protein; | chromosome | CDS | 2996810 | 762 | - | 0.464567 |
| kdgR | SC1838 | putative transcriptional repressor (IclR family) | SubName: Full=Putative transcriptional repressor (IclR family); | chromosome | CDS | 1953623 | 792 | - | 0.493687 |
| kdpE | SC0722 | response regulator in two-component regulatory system with KdpD, regulates kdp operon encoding a high-affinity K translocating ATPase (OmpR family) | SubName: Full=Response regulator in two-component regulatory system with KdpD, regulates kdp operon encoding a high-affinity K translocating ATPase (OmpR family); | chromosome | CDS | 808231 | 678 | - | 0.567847 |
| lacI | SC3620 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 3832635 | 1056 | - | 0.549242 |
| levR | SC3693 | putative NtrC family transcriptional regulators, ATPase domain | SubName: Full=Putative NtrC family transcriptional regulators, ATPase domain; | chromosome | CDS | 3910993 | 2799 | - | 0.547696 |
| lexA | SC4116 | SOS response regulator, transcriptional repressor (LexA family) | RecName: Full=LexA repressor; EC=3.4.21.88; | chromosome | CDS | 4393865 | 609 | + | 0.545156 |
| licR | SC4303 | putative phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) | SubName: Full=Putative phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type); | chromosome | CDS | 4603996 | 1851 | + | 0.540789 |
| lldR | SC3617 | putative transcriptional regulator for lct operon (GntR family) | SubName: Full=Putative transcriptional regulator for lct operon (GntR family); | chromosome | CDS | 3830066 | 708 | + | 0.570621 |
| lrhA | SC2330 | NADH dehydrogenase transcriptional repressor (LysR family) | SubName: Full=NADH dehydrogenase transcriptional repressor (LysR family); | chromosome | CDS | 2454521 | 939 | - | 0.527157 |
| lrp | SC0913 | regulator for lrp regulon and high-affinity branched-chain amino acid transport system; mediator of of leucine response (AsnC family) | SubName: Full=Regulator for lrp regulon and high-affinity branched-chain amino acid transport system mediator of of leucine response (AsnC family); | chromosome | CDS | 1020673 | 495 | + | 0.490909 |
| lysR | SC0136 | putative lysR-family transcriptional regulator | SubName: Full=Putative lysR-family transcriptional regulator; | chromosome | CDS | 157383 | 942 | + | 0.516985 |
| lysR | SC2953 | positive transcriptional regulator (LysR family) | SubName: Full=Positive transcriptional regulator (LysR family); | chromosome | CDS | 3133767 | 936 | + | 0.582265 |
| malI | SC1482 | Maltose regulon regulatory protein malI | SubName: Full=Maltose regulon regulatory protein malI; | chromosome | CDS | 1576710 | 591 | + | 0.576988 |
| malT | SC3447 | transcriptional activator of the mal genes, binds inducer (maltotriose) and ATP (LysR familiy) | RecName: Full=HTH-type transcriptional regulator MalT; AltName: Full=ATP-dependent transcriptional activator MalT; | chromosome | CDS | 3630422 | 2706 | + | 0.554693 |
| marA | SC1537 | transcriptional activator of defense systems (AraC/XylS family), multiple antibiotic resistance protein | SubName: Full=Transcriptional activator of defense systems (AraC/XylS family), multiple antibiotic resistance protein; | chromosome | CDS | 1635242 | 384 | - | 0.466146 |
| marR | SC1538 | transcriptional repressor of marRAB operon, multiple antibiotic resistance protein | SubName: Full=Transcriptional repressor of marRAB operon, multiple antibiotic resistance protein; | chromosome | CDS | 1635645 | 435 | - | 0.48046 |
| marT | SC3680 | putative transcriptional regulatory protein | SubName: Full=Putative transcriptional regulatory protein; | chromosome | CDS | 3896711 | 858 | - | 0.472028 |
| mauR | SC3394 | putative ATPase component of ABC transporter with duplicated ATPase domain | SubName: Full=Putative ATPase component of ABC transporter with duplicated ATPase domain; | chromosome | CDS | 3566342 | 222 | + | 0.536036 |
| melR | SC4176 | regulator of melibiose operon (AraC/XylS family) | SubName: Full=Regulator of melibiose operon (AraC/XylS family); | chromosome | CDS | 4475731 | 1077 | - | 0.517177 |
| metJ | SC3990 | transcriptional repressor of all met genes but metF (MetJ family) | RecName: Full=Met repressor; AltName: Full=Met regulon regulatory protein MetJ; | chromosome | CDS | 4243507 | 318 | - | 0.518868 |
| metR | SC3863 | regulator for metE and metH (LysR family) | SubName: Full=Regulator for metE and metH (LysR family); | chromosome | CDS | 4102802 | 954 | - | 0.587002 |
| mfd | SC1166 | transcription-repair coupling factor | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 1280258 | 3447 | - | 0.570641 |
| mlc | SC1506 | transcriptional repressor of ptsG and ptsHI, global repressor of carbohydrate metabolism (pts operon) (NagC/XylR family) | SubName: Full=Transcriptional repressor of ptsG and ptsHI, global repressor of carbohydrate metabolism (Pts operon) (NagC/XylR family); | chromosome | CDS | 1603260 | 1221 | + | 0.520066 |
| mntR | SC0832 | putative Mn-dependent transcriptional regulator | SubName: Full=Putative Mn-dependent transcriptional regulator; | chromosome | CDS | 930863 | 474 | + | 0.529536 |
| moaR | SC3064 | putative response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain | SubName: Full=Putative response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; | chromosome | CDS | 3243577 | 684 | + | 0.44152 |
| mocR | SC2736 | putative regulatory protein, gntR family | SubName: Full=Putative regulatory protein, gntR family; | chromosome | CDS | 2904414 | 1335 | - | 0.569288 |
| mtlR | SC3611 | repressor for mtl | SubName: Full=Repressor for mtl; | chromosome | CDS | 3821098 | 591 | + | 0.534687 |
| nacR | SC0712 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 797245 | 927 | - | 0.560949 |
| nagC | SC0703 | transcriptional repressor of nag (N-acetylglucosamine) operon (NagC/XylR family) | SubName: Full=Transcriptional repressor of nag (N-acetylglucosamine) operon (NagC/XylR family); | chromosome | CDS | 783578 | 1221 | - | 0.533989 |
| nahR | SC3659 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 3870734 | 903 | - | 0.532669 |
| nanK | SC3274 | putative ManNAc kinase | SubName: Full=Putative ManNAc kinase; | chromosome | CDS | 3459646 | 876 | - | 0.592466 |
| narL | SC1761 | response regulator in two-component regulatory system with NarX (or NarQ), regulates anaerobic respiration and fermentation (LuxR/UhpA familiy) | SubName: Full=Response regulator in two-component regulatory system with NarX (Or NarQ), regulates anaerobic respiration and fermentation (LuxR/UhpA familiy); | chromosome | CDS | 1879051 | 651 | + | 0.534562 |
| narP | SC2251 | response regulator in two-component regulatory system with NarQ (or NarX) | SubName: Full=Response regulator in two-component regulatory system with NarQ (Or NarX); | chromosome | CDS | 2360986 | 648 | + | 0.526235 |
| ner | SC2376 | putatiave helix-turn-helix regulatory protein | SubName: Full=Putatiave helix-turn-helix regulatory protein; | chromosome | CDS | 2500908 | 249 | + | 0.481928 |
| nhaR | SC0035 | transcriptional activator of nhaA (LysR family) | SubName: Full=Transcriptional activator of nhaA (LysR family); | chromosome | CDS | 41673 | 900 | + | 0.507778 |
| nikR | SC3513 | nickel-responsive transcriptional regulator | RecName: Full=Nickel-responsive regulator; | chromosome | CDS | 3705421 | 438 | + | 0.545662 |
| nlp | SC3244 | regulatory factor of maltose metabolism | SubName: Full=Regulatory factor of maltose metabolism; | chromosome | CDS | 3429291 | 288 | + | 0.5 |
| ntrA | SC2278 | putative regulatory protein, gntR family | SubName: Full=Putative regulatory protein, gntR family; | chromosome | CDS | 2393820 | 696 | + | 0.387931 |
| nusA | SC3228 | transcription pausing; L factor | SubName: Full=Transcription pausing L factor; | chromosome | CDS | 3412340 | 1503 | - | 0.52495 |
| nusB | SC0459 | transcription termination; L factor | RecName: Full=N utilization substance protein B homolog; Short=Protein NusB; | chromosome | CDS | 515938 | 420 | + | 0.52619 |
| nusG | SC4032 | component in transcription antitermination | RecName: Full=Transcription termination/antitermination protein NusG; | chromosome | CDS | 4296419 | 546 | + | 0.543956 |
| ompR | SC3434 | Transcriptional regulatory protein ompR | SubName: Full=Transcriptional regulatory protein ompR; | chromosome | CDS | 3613100 | 735 | - | 0.557823 |
| oxyR | SC4014 | regulatory protein sensor for oxidative stress, regulates intracellular hydrogen peroxide (LysR family) | SubName: Full=Regulatory protein sensor for oxidative stress, regulates intracellular hydrogen peroxide (LysR family); | chromosome | CDS | 4277449 | 918 | + | 0.562092 |
| pdhR | SC0150 | transcriptional repressor for pyruvate dehydrogenase complex (GntR family) | SubName: Full=Transcriptional repressor for pyruvate dehydrogenase complex (GntR family); | chromosome | CDS | 171374 | 765 | + | 0.563399 |
| pduD | SC2049 | Propanediol utilization: dehydratase, medium subunit | SubName: Full=Propanediol utilization: dehydratase, medium subunit; | chromosome | CDS | 2141372 | 675 | + | 0.567407 |
| phnO | SC4166 | putative regulator in phn operon | SubName: Full=Putative regulator in phn operon; | chromosome | CDS | 4463562 | 465 | - | 0.494624 |
| phnR | SC0471 | 2-aminoethylphosphonate transport, repressor | RecName: Full=Putative transcriptional regulator of 2-aminoethylphosphonate degradation operons; | chromosome | CDS | 527763 | 720 | - | 0.586111 |
| phoB | SC0438 | response regulator in two-component regulatory system with PhoR (or CreC), regulates pho regulon (OmpR family) | SubName: Full=Response regulator in two-component regulatory system with PhoR (Or CreC), regulates pho regulon (OmpR family); | chromosome | CDS | 495287 | 690 | + | 0.547826 |
| phoP | SC1182 | response regulator in two-component regulatory system with PhoQ, transcribes genes expressed under low Mg+ concentration (OmpR family) | RecName: Full=Virulence transcriptional regulatory protein PhoP; | chromosome | CDS | 1300053 | 675 | - | 0.511111 |
| pocR | SC2044 | Propanediol utilization: transcriptional regulation, AraC family | SubName: Full=Propanediol utilization: transcriptional regulation, AraC family; | chromosome | CDS | 2136138 | 912 | - | 0.458333 |
| prpR | SC0408 | regulator for prp operon (EBP family) | SubName: Full=Regulator for prp operon (EBP family); | chromosome | CDS | 460629 | 1626 | - | 0.555351 |
| pspA | SC1683 | phage shock protein; negative regulatory gene for the psp opreon | SubName: Full=Phage shock protein negative regulatory gene for the psp opreon; | chromosome | CDS | 1794880 | 669 | - | 0.5142 |
| pspC | SC1681 | phage shock protein; regulatory gene, activates expression of psp operon with PspB | SubName: Full=Phage shock protein regulatory gene, activates expression of psp operon with PspB; | chromosome | CDS | 1794237 | 360 | - | 0.519444 |
| pspF | SC1684 | transcription activator | SubName: Full=Transcription activator; | chromosome | CDS | 1795704 | 996 | + | 0.542169 |
| ptsJ | SC2434 | putative regulatory protein, gntR family | SubName: Full=Putative regulatory protein, gntR family; | chromosome | CDS | 2564254 | 1293 | + | 0.590101 |
| purR | SC1449 | transcriptional repressor for pur regulon, glyA, glnB, prsA, speA (GalR/LacI family) | RecName: Full=HTH-type transcriptional repressor PurR; AltName: Full=Pur regulon repressor; AltName: Full=Purine nucleotide synthesis repressor; | chromosome | CDS | 1545608 | 1026 | - | 0.545809 |
| ramA | SC0612 | putative regulatory protein | SubName: Full=Putative regulatory protein; | chromosome | CDS | 681569 | 342 | + | 0.502924 |
| rbsK | SC3477 | putative transcriptional regulator of sugar metabolism | SubName: Full=Putative transcriptional regulator of sugar metabolism; | chromosome | CDS | 3669672 | 1215 | + | 0.416461 |
| rbsR | SC3799 | transcriptional repressor for rbs operon (GalR/LacI family) | SubName: Full=Transcriptional repressor for rbs operon (GalR/LacI family); | chromosome | CDS | 4031625 | 990 | + | 0.535354 |
| rbsk | SC1403 | putative regulatory protein, deoR family | SubName: Full=Putative regulatory protein, deoR family; | chromosome | CDS | 1502550 | 1227 | - | 0.462103 |
| rcsA | SC1987 | positive transcriptional regulator of capsular/exo-polysaccharide synthesis (LuxR/UhpA family) | SubName: Full=Positive transcriptional regulator of capsular/exo-polysaccharide synthesis (LuxR/UhpA family); | chromosome | CDS | 2089188 | 624 | + | 0.387821 |
| rcsB | SC2273 | response regulator (positive) in two-component regulatory system with RcsC (LuxR/UhpA familiy) | SubName: Full=Response regulator (Positive) in two-component regulatory system with RcsC (LuxR/UhpA familiy); | chromosome | CDS | 2384233 | 696 | + | 0.49569 |
| recG | SC3668 | DNA helicase, resolution of Holliday junctions, branch migration | SubName: Full=DNA helicase, resolution of Holliday junctions, branch migration; | chromosome | CDS | 3879181 | 2082 | + | 0.580211 |
| relA | SC2896 | (p)ppGpp synthetase I (GTP pyrophosphokinase) | SubName: Full=(P)ppGpp synthetase I (GTP pyrophosphokinase); | chromosome | CDS | 3062588 | 2235 | - | 0.557047 |
| rfaH | SC3875 | transcriptional activator affecting biosynthesis of lipopolysaccharide core, F pilin, and haemolysin | RecName: Full=Transcription antitermination protein RfaH; | chromosome | CDS | 4117156 | 489 | - | 0.492843 |
| rhaR | SC3939 | positive regulator for rhaRS operon (AraC/XylS familiy) | RecName: Full=HTH-type transcriptional activator RhaR; AltName: Full=L-rhamnose operon transcriptional activator RhaR; | chromosome | CDS | 4193096 | 849 | + | 0.501767 |
| rhaS | SC3938 | positive regulator for rhaBAD operon (AraC/XylS family) | RecName: Full=HTH-type transcriptional activator RhaS; AltName: Full=L-rhamnose operon regulatory protein RhaS; | chromosome | CDS | 4192107 | 837 | + | 0.537634 |
| rhlB | SC3820 | putative helicase | RecName: Full=ATP-dependent RNA helicase RhlB; EC=3.6.4.13; | chromosome | CDS | 4058556 | 1266 | - | 0.548183 |
| rhlE | SC0817 | putative ATP-dependent RNA helicase | RecName: Full=ATP-dependent RNA helicase RhlE; EC=3.6.4.13; | chromosome | CDS | 914182 | 1362 | + | 0.586637 |
| rho | SC3822 | transcription termination factor Rho; polarity suppressor | RecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; | chromosome | CDS | 4060641 | 1332 | + | 0.522523 |
| rnb | SC1696 | RNase II, mRNA degradation | RecName: Full=Exoribonuclease 2; EC=3.1.13.1; AltName: Full=Exoribonuclease II; Short=RNase II; Short=Ribonuclease II; | chromosome | CDS | 1807477 | 1935 | + | 0.557106 |
| rnc | SC2576 | RNase III, ds RNA | RecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; Short=RNase III; | chromosome | CDS | 2745289 | 738 | - | 0.520325 |
| rnk | SC0646 | regulator of nucleoside diphosphate kinase | RecName: Full=Regulator of nucleoside diphosphate kinase; | chromosome | CDS | 721894 | 411 | - | 0.579075 |
| rob | SC4431 | transcriptional regulator (AraC/XylS family) | SubName: Full=Transcriptional regulator (AraC/XylS family); | chromosome | CDS | 4740934 | 870 | - | 0.54023 |
| rocR | SC2363 | putative regulatory protein | SubName: Full=Putative regulatory protein; | chromosome | CDS | 2487283 | 1428 | + | 0.520308 |
| rof | SC0237 | modulator of Rho-dependent transcription termination | SubName: Full=Modulator of Rho-dependent transcription termination; | chromosome | CDS | 276041 | 261 | - | 0.440613 |
| rpc | SC1196 | regulatory protein | SubName: Full=Regulatory protein; | chromosome | CDS | 1312329 | 780 | - | 0.435897 |
| rpiR | SC3530 | Protein rpiR | SubName: Full=Protein rpiR; | chromosome | CDS | 3726653 | 882 | + | 0.378685 |
| rpoA | SC3350 | DNA-directed RNA polymerase alpha chain | RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; | chromosome | CDS | 3537742 | 990 | - | 0.524242 |
| rpoB | SC4037 | RNA polymerase, beta subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 4299811 | 4143 | + | 0.541636 |
| rpoC | SC4038 | RNA polymerase, beta prime subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 4304030 | 4224 | + | 0.544034 |
| rpoD | SC3158 | sigma D (sigma 70) factor of RNA polymerase, major sigma factor during exponential growth | RecName: Full=RNA polymerase sigma factor RpoD; AltName: Full=Sigma-70; | chromosome | CDS | 3338340 | 1977 | + | 0.525038 |
| rpoE | SC2645 | sigma E (sigma 24 ) factor of RNA polymerase, response to periplasmic stress | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 2796652 | 576 | - | 0.508681 |
| rpoH | SC3497 | sigma H (sigma 32) factor of RNA polymerase; transcription of heat shock proteins induced by cytoplasmic stress | RecName: Full=RNA polymerase sigma factor RpoH; AltName: Full=RNA polymerase sigma-32 factor; | chromosome | CDS | 3690041 | 855 | - | 0.54152 |
| rpoN | SC3258 | sigma N (sigma 54) factor of RNA polymerase, pleiotrophic functions (nitrogen metabolism, formate degradation, phage shock response) | RecName: Full=RNA polymerase sigma-54 factor; | chromosome | CDS | 3439152 | 1434 | + | 0.540446 |
| rpoS | SC2856 | sigma S (sigma 38) factor of RNA polymerase, major sigmafactor during stationary phase | RecName: Full=RNA polymerase sigma factor RpoS; AltName: Full=Sigma S; AltName: Full=Sigma-38; | chromosome | CDS | 3020428 | 993 | - | 0.523666 |
| rsd | SC4046 | regulator of sigma D, has binding activity to the major sigma subunit of RNAP | RecName: Full=Regulator of sigma D; | chromosome | CDS | 4316325 | 489 | - | 0.494888 |
| rstA | SC1493 | response regulator in two-component regulatory system with RstB (OmpR family) | SubName: Full=Response regulator in two-component regulatory system with RstB (OmpR family); | chromosome | CDS | 1589448 | 732 | - | 0.532787 |
| rtcR | SC3453 | sigma N (sigma 54)-dependent regulator of rtcBA expression (EBP familiy) | SubName: Full=Sigma N (Sigma 54)-dependent regulator of rtcBA expression (EBP familiy); | chromosome | CDS | 3638168 | 1584 | + | 0.598485 |
| sdiA | SC1954 | transcriptional regulator of ftsQAZ gene cluster (LuxR/UhpA family) | SubName: Full=Transcriptional regulator of ftsQAZ gene cluster (LuxR/UhpA family); | chromosome | CDS | 2062122 | 723 | - | 0.48686 |
| sgcR | SC1614 | putative transcriptional repressor of sgc operon (DeoR family) | SubName: Full=Putative transcriptional repressor of sgc operon (DeoR family); | chromosome | CDS | 1719724 | 792 | + | 0.513889 |
| sinR | SC0297 | transcriptional regulator | SubName: Full=Transcriptional regulator; | chromosome | CDS | 343256 | 948 | + | 0.394515 |
| sirA | SC1950 | putative response regulator (LuxR/UhpA familiy) | SubName: Full=Putative response regulator (LuxR/UhpA familiy); | chromosome | CDS | 2060711 | 657 | - | 0.51446 |
| slyA | SC1462 | transcriptional regulator for hemolysin (MarR family) | RecName: Full=Transcriptional regulator SlyA; | chromosome | CDS | 1557574 | 435 | + | 0.489655 |
| sopB | SC1241 | SopB protein | SubName: Full=SopB protein; | chromosome | CDS | 1350920 | 1071 | - | 0.498599 |
| soxR | SC4145 | redox-sensing transcriptional activator SoxR, contains iron-sulfur center for redox-sensing (MerR family) | SubName: Full=Redox-sensing transcriptional activator SoxR, contains iron-sulfur center for redox-sensing (MerR family); | chromosome | CDS | 4438997 | 459 | + | 0.544662 |
| soxS | SC4144 | transcriptional activator of superoxide response regulon (AraC/XylS family) | SubName: Full=Transcriptional activator of superoxide response regulon (AraC/XylS family); | chromosome | CDS | 4438587 | 324 | - | 0.515432 |
| spoT | SC3666 | (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase | SubName: Full=(P)ppGpp synthetase II/guanosine-3,5-bis pyrophosphate 3-pyrophosphohydrolase; | chromosome | CDS | 3876370 | 2112 | + | 0.535038 |
| sprB | SC2798 | transcriptional regulator | SubName: Full=Transcriptional regulator; | chromosome | CDS | 2964494 | 756 | - | 0.451058 |
| srlR | SC2770 | transcriptional repressor for glucitol operon (DeoR family) | SubName: Full=Transcriptional repressor for glucitol operon (DeoR family); | chromosome | CDS | 2936050 | 774 | + | 0.5 |
| srmB | SC2648 | ATP-dependent RNA helicase | RecName: Full=ATP-dependent RNA helicase SrmB; EC=3.6.4.13; | chromosome | CDS | 2800126 | 1335 | + | 0.54382 |
| ssrB | SC1412 | Secretion system regulator: transcriptonal activator, homologous with degU/uvrY/bvgA | SubName: Full=Secretion system regulator: transcriptonal activator, homologous with degU/uvrY/bvgA; | chromosome | CDS | 1513910 | 639 | - | 0.397496 |
| stmR | SC3061 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 3239147 | 879 | + | 0.525597 |
| tctD | SC2716 | tricarboxylic transport: regulatory protein | SubName: Full=Tricarboxylic transport: regulatory protein; | chromosome | CDS | 2888444 | 675 | - | 0.551111 |
| tdcA | SC3191 | transcriptional activator of tdc operon (LysR family) | SubName: Full=Transcriptional activator of tdc operon (LysR family); | chromosome | CDS | 3374536 | 939 | - | 0.446219 |
| tinR | SC0304 | transcriptional regulator | SubName: Full=Transcriptional regulator; | chromosome | CDS | 351703 | 474 | + | 0.331224 |
| torR | SC3742 | response regulator in multi-component regualtory system wtih TorS (sensory kinase) and TorT (periplasmic sensor), regulates tor operon (TorR family) | SubName: Full=Response regulator in multi-component regualtory system wtih TorS (Sensory kinase) and TorT (Periplasmic sensor), regulates tor operon (TorR family); | chromosome | CDS | 3963674 | 693 | + | 0.559885 |
| treR | SC4311 | transcriptional repressor of treABC (GalR/LacI family) | SubName: Full=Transcriptional repressor of treABC (GalR/LacI family); | chromosome | CDS | 4612861 | 948 | - | 0.560127 |
| trpR | SC4428 | transcriptional repressor for trp operon and aroH (TrpR family) | RecName: Full=Trp operon repressor; | chromosome | CDS | 4739298 | 327 | + | 0.553517 |
| ttk | SC3655 | putative transcriptional regulator (TetR/ArcR family) | RecName: Full=Nucleoid occlusion factor SlmA; | chromosome | CDS | 3867585 | 597 | + | 0.519263 |
| tyrR | SC1676 | transcriptional regulator of aromatic amino acid biosynthesis genes (aroF, aroG, tyrA) and aromatic amino acid transport, has intrinsic ATPase and pho | SubName: Full=Transcriptional regulator of aromatic amino acid biosynthesis genes (AroF, aroG, tyrA) and aromatic amino acid transport, has intrinsic ATPase and phosphatase activity (EBP family); | chromosome | CDS | 1789313 | 1542 | - | 0.534371 |
| uhpA | SC3710 | response regulator (repressor) in two-component regulatory system wtih UhpB, regulates uhpT operon (LuxR/UhpA family) | SubName: Full=Response regulator (Repressor) in two-component regulatory system wtih UhpB, regulates uhpT operon (LuxR/UhpA family); | chromosome | CDS | 3930220 | 654 | - | 0.571865 |
| umuD | SC2001 | error-prone repair: SOS-response transcriptional repressors (LexA homologs, RecA-mediated autopeptidases) | SubName: Full=Error-prone repair: SOS-response transcriptional repressors (LexA homologs, RecA-mediated autopeptidases); | chromosome | CDS | 2102918 | 420 | - | 0.495238 |
| uxuR | SC3024 | putative regulatory protein, gntR family | SubName: Full=Putative regulatory protein, gntR family; | chromosome | CDS | 3206586 | 801 | - | 0.449438 |
| uxuR | SC4362 | transcriptional repressor for uxu operon | SubName: Full=Transcriptional repressor for uxu operon; | chromosome | CDS | 4668730 | 774 | + | 0.54522 |
| vacB | SC4244 | putative exoribonuclease | RecName: Full=Ribonuclease R; Short=RNase R; EC=3.1.13.1; | chromosome | CDS | 4545765 | 2439 | + | 0.551866 |
| xapR | SC2417 | regulator for XapA (LysR family) | SubName: Full=Regulator for XapA (LysR family); | chromosome | CDS | 2547995 | 885 | - | 0.501695 |
| xylR | SC3597 | xylose operon regulatory protein (AraC/XylS family) | SubName: Full=Xylose operon regulatory protein (AraC/XylS family); | chromosome | CDS | 3801790 | 1179 | + | 0.526718 |
| yafC | SC0252 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 291802 | 915 | - | 0.51694 |
| yafC | SC0906 | putative transcriptional regulator, lysR family | SubName: Full=Putative transcriptional regulator, lysR family; | chromosome | CDS | 1013276 | 912 | + | 0.575658 |
| yafP | SC3587 | putative acetyltransferase | SubName: Full=Putative acetyltransferase; | chromosome | CDS | 3790768 | 468 | - | 0.412393 |
| yajF | SC0434 | putative sugar kinase/putative transcriptional regulator (NagC/XylR familiy) | SubName: Full=Putative sugar kinase/putative transcriptional regulator (NagC/XylR familiy); | chromosome | CDS | 488460 | 909 | + | 0.576458 |
| ybaD | SC0456 | putative transcriptional regulator | RecName: Full=Transcriptional repressor NrdR; | chromosome | CDS | 513802 | 450 | + | 0.495556 |
| ybaO | SC0501 | putative transcriptional regulator (AsnC familiy) | SubName: Full=Putative transcriptional regulator (AsnC familiy); | chromosome | CDS | 560625 | 459 | + | 0.51634 |
| ybbS | SC0555 | putative transcriptional regulator, LysR family | RecName: Full=HTH-type transcriptional activator AllS; | chromosome | CDS | 619171 | 963 | - | 0.521288 |
| ybcM | SC1034 | bacterial regulatory protein, AraC family | SubName: Full=Bacterial regulatory protein, AraC family; | chromosome | CDS | 1153360 | 780 | + | 0.54359 |
| ybdM | SC0635 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 708600 | 618 | - | 0.514563 |
| ybdO | SC0637 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 710591 | 903 | - | 0.390919 |
| ybdO | SC0014 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 15015 | 948 | + | 0.405063 |
| ybeF | SC0663 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 738580 | 954 | - | 0.502096 |
| ybiH | SC0816 | putative transcriptional repressor (TetR/AcrR family) | SubName: Full=Putative transcriptional repressor (TetR/AcrR family); | chromosome | CDS | 913278 | 675 | - | 0.527407 |
| yccR | SC1024 | putative DNA transformation protein | SubName: Full=Putative DNA transformation protein; | chromosome | CDS | 1143714 | 606 | + | 0.49835 |
| ycdC | SC1072 | putative transcriptional repressor (TetR/AcrR family) | SubName: Full=Putative transcriptional repressor (TetR/AcrR family); | chromosome | CDS | 1185806 | 639 | + | 0.549296 |
| ycfQ | SC1163 | putative transcriptional repressor (TetR/AcrR family) | SubName: Full=Putative transcriptional repressor (TetR/AcrR family); | chromosome | CDS | 1277914 | 636 | - | 0.542453 |
| ycfX | SC1170 | putative regulator (NagC/XylR family) | RecName: Full=N-acetyl-D-glucosamine kinase; EC=2.7.1.59; AltName: Full=GlcNAc kinase; | chromosome | CDS | 1287208 | 912 | + | 0.564693 |
| ycgE | SC1277 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 1379815 | 849 | + | 0.462898 |
| yciT | SC1699 | putative regulatory protein, deoR family | SubName: Full=Putative regulatory protein, deoR family; | chromosome | CDS | 1812043 | 753 | + | 0.501992 |
| ydcI | SC1620 | putative transcriptional regulators, LysR family | SubName: Full=Putative transcriptional regulators, LysR family; | chromosome | CDS | 1727983 | 993 | + | 0.53575 |
| ydcN | SC1660 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 1771052 | 603 | - | 0.514096 |
| ydcN | SC1602 | putative oxidoreductase/putative repressor | SubName: Full=Putative oxidoreductase/putative repressor; | chromosome | CDS | 1708827 | 537 | - | 0.530726 |
| ydcR | SC1595 | putative regulatory protein, gntR family | SubName: Full=Putative regulatory protein, gntR family; | chromosome | CDS | 1701542 | 1425 | - | 0.530526 |
| ydeW | SC3963 | putative transcriptional repressor | RecName: Full=Transcriptional regulator LsrR; | chromosome | CDS | 4215327 | 960 | - | 0.505208 |
| ydfH | SC1527 | putative regulatory protein, gntR family | SubName: Full=Putative regulatory protein, gntR family; | chromosome | CDS | 1626144 | 687 | - | 0.50655 |
| ydhB | SC1448 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 1544679 | 933 | + | 0.569132 |
| ydhM | SC1456 | putative transcriptional repressor (TetR/AcrR family) | SubName: Full=Putative transcriptional repressor (TetR/AcrR family); | chromosome | CDS | 1551771 | 537 | - | 0.558659 |
| ydiP | SC1374 | putative transcription regulator, AraC family | SubName: Full=Putative transcription regulator, AraC family; | chromosome | CDS | 1471844 | 891 | + | 0.425365 |
| ydjF | SC1313 | Hypothetical transcriptional regulator ydjF | SubName: Full=Hypothetical transcriptional regulator ydjF; | chromosome | CDS | 1409746 | 759 | + | 0.421607 |
| yeaM | SC1290 | putative regulator (AraC/XylS family) | SubName: Full=Putative regulator (AraC/XylS family); | chromosome | CDS | 1387816 | 795 | + | 0.550943 |
| yebK | SC1893 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 2002744 | 870 | + | 0.512644 |
| yebY | SC1878 | putative periplasmic or exported protein | SubName: Full=Putative periplasmic or exported protein; | chromosome | CDS | 1989555 | 354 | - | 0.533898 |
| yeeY | SC2079 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 2168784 | 915 | - | 0.52459 |
| yegW | SC2160 | putative regulatory protein, gntR family | SubName: Full=Putative regulatory protein, gntR family; | chromosome | CDS | 2261997 | 747 | - | 0.527443 |
| yehT | SC2174 | putative regulator | SubName: Full=Putative regulator; | chromosome | CDS | 2276259 | 720 | - | 0.508333 |
| yehV | SC2176 | putative transcriptional repressor (MerR family) | SubName: Full=Putative transcriptional repressor (MerR family); | chromosome | CDS | 2278883 | 732 | + | 0.540984 |
| yeiE | SC2217 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 2323062 | 864 | - | 0.552083 |
| yejH | SC2240 | putative ATP-dependent helicase | SubName: Full=Putative ATP-dependent helicase; | chromosome | CDS | 2348398 | 1761 | + | 0.570698 |
| yfaX | SC3463 | putative bacterial transcriptional regulator | SubName: Full=Putative bacterial transcriptional regulator; | chromosome | CDS | 3651283 | 756 | - | 0.505291 |
| yfaX | SC2295 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 2413714 | 783 | - | 0.51341 |
| yfeR | SC2422 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 2552371 | 927 | - | 0.564186 |
| yfhH | SC2567 | putative ABC superfamily (membrane) transport protein | SubName: Full=Putative ABC superfamily (Membrane) transport protein; | chromosome | CDS | 2738050 | 849 | + | 0.566549 |
| yfhP | SC2538 | believed to be involved in assembly of Fe-S clusters | RecName: Full=HTH-type transcriptional regulator IscR; | chromosome | CDS | 2703539 | 495 | - | 0.557576 |
| yfiE | SC2649 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 2801478 | 945 | - | 0.506878 |
| ygaA | SC2772 | putative regulator (EBP family) | RecName: Full=Anaerobic nitric oxide reductase transcription regulator NorR; | chromosome | CDS | 2937786 | 1515 | - | 0.59868 |
| ygaE | SC2726 | putative transcriptional repressor (GntR familiy) | SubName: Full=Putative transcriptional repressor (GntR familiy); | chromosome | CDS | 2899135 | 678 | + | 0.564897 |
| ygaV | SC2729 | putative regulatory protein, arsR family | SubName: Full=Putative regulatory protein, arsR family; | chromosome | CDS | 2900724 | 300 | + | 0.513333 |
| ygbI | SC0164 | putative transcriptional regulator (LysR family) | SubName: Full=Putative transcriptional regulator (LysR family); | chromosome | CDS | 189514 | 768 | + | 0.550781 |
| ygbI | SC2849 | putative regulatory protein, deoR family | SubName: Full=Putative regulatory protein, deoR family; | chromosome | CDS | 3015443 | 765 | + | 0.556863 |
| ygiP | SC0378 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 421201 | 966 | + | 0.489648 |
| ygiV | SC3119 | putative bacterial regulatory helix-turn-helix proteins, araC family | SubName: Full=Putative bacterial regulatory helix-turn-helix proteins, araC family; | chromosome | CDS | 3300078 | 867 | - | 0.575548 |
| ygiX | SC3121 | putative transcriptional regulator (OmpR family) | SubName: Full=Putative transcriptional regulator (OmpR family); | chromosome | CDS | 3301407 | 813 | + | 0.527675 |
| yhaJ | SC3181 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 3362075 | 897 | - | 0.567447 |
| yhcK | SC3278 | putative regulatory protein, gntR family | RecName: Full=Transcriptional regulator NanR; | chromosome | CDS | 3463888 | 792 | - | 0.525253 |
| yhcS | SC3305 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 3488029 | 930 | + | 0.535484 |
| yhgF | SC3436 | paral putative RNase R | SubName: Full=Paral putative RNase R; | chromosome | CDS | 3614617 | 2331 | + | 0.585586 |
| yhhK | SC3493 | putative acetyltransferase | SubName: Full=Putative acetyltransferase; | chromosome | CDS | 3687267 | 384 | + | 0.554688 |
| yhhY | SC3476 | putative transferase | SubName: Full=Putative transferase; | chromosome | CDS | 3668920 | 489 | + | 0.546012 |
| yhjB | SC3540 | putative transcriptional regulator (LuxR/UhpA familiy) | SubName: Full=Putative transcriptional regulator (LuxR/UhpA familiy); | chromosome | CDS | 3738031 | 558 | - | 0.492832 |
| yiaC | SC3575 | putative acetyltransferase | SubName: Full=Putative acetyltransferase; | chromosome | CDS | 3780692 | 441 | + | 0.514739 |
| yiaG | SC3580 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 3786641 | 291 | + | 0.463918 |
| yieP | SC3801 | putative regulatory protein, gntR family | SubName: Full=Putative regulatory protein, gntR family; | chromosome | CDS | 4034019 | 705 | - | 0.512057 |
| yifA | SC3804 | putative transcriptional regulator, LysR family | RecName: Full=HTH-type transcriptional regulator HdfR; AltName: Full=H-NS-dependent flhDC regulator; | chromosome | CDS | 4040691 | 849 | - | 0.517079 |
| yihW | SC3915 | putative glycerol-3-phosphate regulon repressor (DeoR family) | SubName: Full=Putative glycerol-3-phosphate regulon repressor (DeoR family); | chromosome | CDS | 4169655 | 804 | + | 0.539801 |
| yiiD | SC3919 | putative acetyltransferase | SubName: Full=Putative acetyltransferase; | chromosome | CDS | 4172545 | 990 | + | 0.544444 |
| yijC | SC4016 | putative transcriptional repressor (TetR/AcrR family) | RecName: Full=HTH-type transcriptional repressor FabR; | chromosome | CDS | 4279948 | 636 | + | 0.558176 |
| yijO | SC4007 | paral putative regulator (AraC/XylS family) | SubName: Full=Paral putative regulator (AraC/XylS family); | chromosome | CDS | 4266664 | 852 | - | 0.562207 |
| yisR | SC3603 | putative bacterial regulatory helix-turn-helix proteins, araC family | SubName: Full=Putative bacterial regulatory helix-turn-helix proteins, araC family; | chromosome | CDS | 3807351 | 816 | - | 0.540441 |
| yjaB | SC4060 | putative acetyltransferase | SubName: Full=Putative acetyltransferase; | chromosome | CDS | 4333596 | 438 | - | 0.481735 |
| yjdC | SC4200 | putative bacterial regulatory protein, merR family | SubName: Full=Putative bacterial regulatory protein, merR family; | chromosome | CDS | 4501471 | 576 | - | 0.517361 |
| yjeB | SC4243 | putative negative regulator | RecName: Full=HTH-type transcriptional repressor NsrR; | chromosome | CDS | 4545239 | 489 | + | 0.470348 |
| yjfQ | SC4255 | putative transcriptional repressor (DeoR family) | RecName: Full=HTH-type transcriptional regulator UlaR; | chromosome | CDS | 4557639 | 756 | - | 0.544974 |
| yjgC | SC1671 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 1783079 | 906 | - | 0.551876 |
| yjgJ | SC1668 | putative bacterial regulatory helix-turn-helix proteins, araC family | SubName: Full=Putative bacterial regulatory helix-turn-helix proteins, araC family; | chromosome | CDS | 1780461 | 591 | - | 0.576988 |
| yjgM | SC4329 | putative acetyltransferase | SubName: Full=Putative acetyltransferase; | chromosome | CDS | 4628939 | 516 | - | 0.525194 |
| yjiE | SC4366 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 4672745 | 909 | - | 0.524752 |
| ykgD | SC0600 | putative transcriptional regulator (AraC/XylS family) | SubName: Full=Putative transcriptional regulator (AraC/XylS family); | chromosome | CDS | 669410 | 855 | - | 0.589474 |
| ymbI | SC0762 | transcriptional regulator, lysR family | SubName: Full=Transcriptional regulator, lysR family; | chromosome | CDS | 855098 | 891 | + | 0.350168 |
| ynfL | SC1505 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 1602233 | 900 | + | 0.572222 |
| yoaA | SC1815 | putative DNA helicase | SubName: Full=Putative DNA helicase; | chromosome | CDS | 1933690 | 1911 | - | 0.562533 |
| yqgE | SC3036 | Protein yqgE | RecName: Full=UPF0301 protein YqgE; | chromosome | CDS | 3217521 | 636 | + | 0.52044 |
| yqhC | SC3107 | putative transcriptional regulator (AraC/XylS family) | SubName: Full=Putative transcriptional regulator (AraC/XylS family); | chromosome | CDS | 3283806 | 921 | - | 0.508143 |
| yqiR | SC0681 | putative sigma-54 dependent transcriptional regulator | SubName: Full=Putative sigma-54 dependent transcriptional regulator; | chromosome | CDS | 757089 | 1929 | + | 0.499222 |
| yrbA | SC3246 | putative transcriptional regulator (BolA family) | SubName: Full=Putative transcriptional regulator (BolA family); | chromosome | CDS | 3430950 | 294 | - | 0.5 |
| ytfH | SC4277 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 4576636 | 387 | + | 0.563307 |
| yurK | SC3536 | putative regulatory protein, gntR family | SubName: Full=Putative regulatory protein, gntR family; | chromosome | CDS | 3733092 | 720 | - | 0.488889 |
| yvbU | SC2284 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 2400818 | 879 | + | 0.476678 |
| ywbI | SC4149 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 4444003 | 888 | - | 0.559685 |
| ywfK | SC0854 | putative transcriptional regulator, LysR family | SubName: Full=Putative transcriptional regulator, LysR family; | chromosome | CDS | 959928 | 648 | - | 0.410494 |
| zntR | SC3347 | Zn(II)-responsive transcriptional regulator (MerR family) | SubName: Full=Zn(II)-responsive transcriptional regulator (MerR family); | chromosome | CDS | 3536406 | 426 | - | 0.481221 |
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