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2024-04-29 10:57:05

Gene list

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COG category: Transcription
Organism: Phage Gifsy-1

Number of genes found: 333

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Phage Gifsy-1
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SC1242 Hypothetical protein HI1418chromosome CDS1351955 294 + 0.489796
NA SC4190 putative bacterial regulatory proteins, luxR familychromosome CDS4494556 288 - 0.298611
NA SC0390 putative response regulatorchromosome CDS435596 642 + 0.400312
NA SC1869 putative DNA-binding proteinchromosome CDS1982079 396 - 0.517677
NA SC4090 unknownchromosome CDS4367690 318 - 0.550314
NA SC3923 putative bacterial regulatory protein, merR familychromosome CDS4174993 291 + 0.443299
NA SC3494 hypothetical proteinchromosome CDS3687647 519 - 0.499037
NA SC3585 putative acetyltransferasechromosome CDS3789830 486 - 0.49177
NA SC4121 putative outer membrane or exportedchromosome CDS4397180 1311 + 0.519451
NA SC4381 hypothetical proteinchromosome CDS4687837 816 - 0.573529
NA SC1575 putative transcriptional regulator, TetR familychromosome CDS1672235 579 + 0.564767
NA SC1200 hypothetical proteinchromosome CDS1314348 309 - 0.495146
NA SC2211 putative transcriptional regulatorchromosome CDS2314803 390 - 0.520513
NA SC1411 putative regulatory proteins, merR familychromosome CDS1513003 729 - 0.539095
NA SC3295 putative regulatory protein, gntR familychromosome CDS3480005 666 - 0.496997
NA SC0611 putative regulatory proteinchromosome CDS680699 582 - 0.532646
NA SC1201 putative replication proteinchromosome CDS1316708 819 + 0.492063
NA SC0387 putative response regulatorchromosome CDS433323 744 + 0.401882
NA SC0404 putative transcription regulator, AraC familychromosome CDS456055 1005 + 0.579104
NA SC3932 hypothetical proteinchromosome CDS4185835 615 + 0.570732
NA SC3605 putative transcriptional regulatorchromosome CDS3812266 882 + 0.566893
NA SC2588 hypothetical proteinchromosome CDS2756765 786 - 0.480916
NA SC3752 putative transcriptional regulator, LysR familychromosome CDS3977063 789 + 0.542459
NA SC2700 hypothetical proteinchromosome CDS2864363 987 + 0.401216
NA SC1276 putative response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domainchromosome CDS1379099 648 + 0.368827
NA SC0452 putative regulatory proteinchromosome CDS510188 693 + 0.526696
NA SC3697 putative helix-turn-helix proteinchromosome CDS3917580 324 + 0.484568
NA SC2589 putative bacteriophage proteinchromosome CDS2757615 564 - 0.432624
NA SC0958 putative leucine response regulatorchromosome CDS1078356 462 - 0.489177
NA SC3038 putative transcriptional regulatorchromosome CDS3218619 717 - 0.555091
NA SC2959 putative transcriptional regulator, LysR familychromosome CDS3140650 348 - 0.571839
NA SC0973 putative regulatorchromosome CDS1092304 468 - 0.463675
NA SC2634 putative DNA-binding proteinchromosome CDS2786704 420 + 0.461905
NA SC2951 putative transcriptional regulatorchromosome CDS3131265 1113 + 0.572327
NA SC3296 putative regulatory protein, gntR familychromosome CDS3480657 630 - 0.488889
NA SC0017 putative proteinchromosome CDS17044 318 - 0.402516
NA SC2834 putative acetyltransferasechromosome CDS2999519 528 + 0.471591
RPOZ SC3665 DNA-directed RNA polymerase omega chainchromosome CDS3876076 276 + 0.536232
aac6 SC1615 cryptic aminoglycoside resistance genechromosome CDS1720515 438 + 0.518265
adiY SC4174 transcriptional activator of adiA (AraC/XylS family)chromosome CDS4472181 762 - 0.434383
agrR SC4317 putative arginine repressorchromosome CDS4619085 489 - 0.476483
allR SC0557 putative regulatory proteinchromosome CDS620921 819 + 0.550672
araC SC0098 transcriptional regulator (AraC/XylS family) for ara operonchromosome CDS115653 846 + 0.537825
arcA SC4443 response regulator (OmpR family) in two-component regulatory system with ArcB (or CpxA), regulates genes in aerobic pathwayschromosome CDS4753638 717 - 0.523013
argR SC3298 repressor of arg regulon (ArgR familiy)chromosome CDS3482759 471 + 0.501062
asnC SC3789 transcriptional regulator (AsnC family) for asnA, gidAchromosome CDS4019754 459 - 0.503268
baeR SC2133 response regulator in two-component regulatory system with BaeS (OmpR family)chromosome CDS2237007 723 + 0.544952
basR SC4171 response regulator in two-component regulatory system with BasS (OmpR family)chromosome CDS4468262 669 - 0.533632
bglJ SC4400 transcriptional regulator (activator) of bgl operon (LuxR/UhpA family)chromosome CDS4709112 675 + 0.491852
bls SC1855 putative acetyltransferasechromosome CDS1970940 420 - 0.419048
budR SC2570 putative transcriptional regulator, LysR familychromosome CDS2741188 927 + 0.429342
cadC SC2552 transcriptional activator of cad operon (OmpR family)chromosome CDS2717238 1545 + 0.473786
cafR SC1665 putative bacterial regulatory helix-turn-helix proteins, araC familychromosome CDS1777523 858 + 0.384615
cdaR SC2489 putative regulatory proteinchromosome CDS2622528 1182 - 0.494924
cdaR SC0210 putative inner membrane proteinchromosome CDS242185 1158 + 0.548359
celD SC1336 transcriptional repressor of cel operon (AraC/XylS family)chromosome CDS1432640 843 + 0.434164
celR SC3566 putative bacterial regulatory proteins, lacI familychromosome CDS3770037 1008 + 0.59623
citB SC0046 putative transcription regulator sensor for citratechromosome CDS55360 687 - 0.483261
cobB SC1171 putative nicotinate-nucleotide dimethylbenzimidazolephosphoribosltransferase, homolog of virulence factorchromosome CDS1288138 822 + 0.527981
copR SC1046 Copper resistance; transcriptional regulatory proteinchromosome CDS1163061 747 - 0.506024
cpxR SC3950 response reguator in two-component regulatory system with CpxA, regulates expression of protein folding and degrading factors (OmpR family)chromosome CDS4202789 699 - 0.543634
creB SC4433 response regulator in two-component regulatory system with CreC (OmpR family)chromosome CDS4742501 690 + 0.581159
cro SC0339 regulatory protein cro (Antirepressor)chromosome CDS383603 216 + 0.462963
csgD SC1090 putative transcriptional regulator (LuxR/UhpA family)chromosome CDS1209813 651 - 0.407066
csiE SC2547 stationary phase inducible proteinchromosome CDS2711681 1278 + 0.549296
cspA SC3581 Cold shock protein cspA (CSP-A)chromosome CDS3787219 213 + 0.474178
cspB SC1999 putative cold-shock proteinchromosome CDS2100782 411 - 0.403893
cspC SC1831 Cold shock-like protein cspCchromosome CDS1950723 210 - 0.471429
cspD SC0898 CspA-like proteinchromosome CDS1006824 222 - 0.518018
cspE SC0658 RNA chaperone, negative regulator of cspA transcriptionchromosome CDS735432 240 + 0.420833
cspH SC1254 cold shock protein-like proteinchromosome CDS1362466 213 - 0.469484
cueR SC0540 putative heavy metal transcriptional repressor (MerR family)chromosome CDS604913 417 + 0.527578
cysB SC1710 transcriptional regulator for cysteine regulon (LysR familiy)chromosome CDS1821538 975 - 0.518974
cytR SC3983 transcriptional repressor (GalR/LacI family)chromosome CDS4235241 993 - 0.538771
dbpA SC1650 ATP-dependent RNA helicase, stimulated by 23S rRNAchromosome CDS1761471 1374 - 0.547307
dcuR SC4181 response regulator in two-component regulatory system with DcuS, regulates anaerobic fumarate respirationchromosome CDS4483711 720 - 0.491667
deaD SC3221 cysteine sulfinate desulfinasechromosome CDS3402212 1956 - 0.576176
deoR SC3714 putative regulatory protein, deoR familychromosome CDS3934491 786 + 0.519084
deoR SC0858 transcriptional repressor for deoxyribose operon (DeoR family)chromosome CDS964491 759 - 0.517787
dgoR SC3748 galactonate operon transcriptional repressor (GntR family)chromosome CDS3972263 690 - 0.536232
dinG SC0818 LexA regulated (SOS) repair enzymechromosome CDS915751 2145 + 0.545455
dpiA SC0656 response regulator in two-component regulatory system with DpiB, transcriptional regulation of cit operon (citrate fermentation) genes and of plasmidchromosome CDS732340 549 + 0.537341
dsdC SC3722 transcriptional activator (LysR family)chromosome CDS3941604 939 - 0.531416
ecnR SC4216 putative bacterial regulatory protein, luxR familychromosome CDS4515357 645 - 0.458915
emrR SC2747 transcriptional repressor of emrAB operon (MarR family)chromosome CDS2915805 531 + 0.487759
envR SC3326 transcriptional repressor for envCD (acrEF) (TetR/AcrR family)chromosome CDS3514763 663 - 0.434389
eutR SC2453 putative regulator ethanolamine operon (AraC/XylS family)chromosome CDS2578663 1053 - 0.540361
fadR SC1798 negative regulator for fad regulon and positive activator of fabA (GntR family)chromosome CDS1921062 744 - 0.520161
farR SC3706 putative regulatory protein, gntR familychromosome CDS3924106 744 - 0.405914
farR SC3959 putative regulatory protein, gntR familychromosome CDS4212063 723 + 0.511757
fhlA SC2792 formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons (EBP family)chromosome CDS2958009 2190 + 0.544749
fimW SC0590 putative fimbrial proteinchromosome CDS658397 597 - 0.41206
fimZ SC0588 fimbrial protein Z, putative transcriptional regulator (LuxR/UhpA family)chromosome CDS655946 726 - 0.409091
fis SC3323 DNA-binding protein fischromosome CDS3510997 297 + 0.464646
flgM SC1119 anti-FliA (anti-sigma) factor; also known as RflB proteinchromosome CDS1237100 294 - 0.517007
fliA SC1960 sigma F (sigma 28) factor of RNA polymerase, transcription of late flagellar genes (class 3a and 3b operons)chromosome CDS2067212 720 - 0.548611
fruR SC0115 transcriptional repressor of fru operon and others (GlaR/LacI family)chromosome CDS132669 1005 + 0.565174
fucR SC2919 positive regulator of the fuc operon (DeoR family)chromosome CDS3091697 711 + 0.496484
gadR SC3203 transcriptional regulator of sugar metabolismchromosome CDS3387496 774 + 0.502584
galR SC2950 transcriptional repressor of galETK operon (GalR/LacI family)chromosome CDS3130316 1029 + 0.56171
galS SC2207 transcriptional repressor of mgl operon (GalR/LacI family)chromosome CDS2310628 1023 - 0.557185
gbpR SC2197 putative transcriptional regulator, LysR familychromosome CDS2299396 909 + 0.544554
gcvA SC2922 regulator of gcv operon (LysR family)chromosome CDS3093973 918 - 0.506536
glpR SC3454 transcriptional repressor of the glp operon (DeoR family)chromosome CDS3639748 759 - 0.540184
gntR SC2346 putative transcriptional regulatorchromosome CDS2471794 1020 + 0.555882
gntR SC3473 transcriptional repressor gnt-I, gntUKR (GalR/LacI familiy)chromosome CDS3665471 1062 - 0.56403
greA SC3237 transcription elongation factor, cleaves 3' nucleotide of paused mRNAchromosome CDS3422670 477 - 0.509434
greB SC3435 transcription elongation factor and transcript cleavagechromosome CDS3614045 474 + 0.514768
gutM SC2769 putative glucitol (srl) operon regulatory proteinchromosome CDS2935493 360 + 0.55
hcrR SC2850 putative transcriptional regulatorchromosome CDS3016226 405 - 0.530864
hepA SC0091 RNA polymerase associated protein, putative SNF2 family RNA helicasechromosome CDS104220 2907 - 0.570691
hilA SC2808 invasion genes transcription activatorchromosome CDS2973384 1662 + 0.431408
hilC SC2799 bacterial regulatory helix-turn-helix proteins, araC familychromosome CDS2965634 888 - 0.369369
hilD SC4191 putative AraC-type DNA-binding domain-containing proteinchromosome CDS4494840 876 - 0.347032
hilD SC2807 regulatory helix-turn-helix proteins, araC familychromosome CDS2971363 930 + 0.408602
hmrR SC0395 putative transcriptional regulatorchromosome CDS445402 465 + 0.544086
hpaA SC1058 4-hydroxyphenylacetate catabolismchromosome CDS1174836 897 + 0.520624
hpaR SC1050 4-hydroxyphenylacetate catabolismchromosome CDS1166930 441 - 0.52381
hthR SC1078 putative transcriptional regulatorchromosome CDS1194574 882 - 0.496599
hutC SC0787 histidine utilization repressorchromosome CDS882722 678 + 0.564897
hypB SC2788 hydrogenase-3 accessory protein, assembly of metallocenterchromosome CDS2954638 873 + 0.573883
iciA SC3005 inhibitor of replication initiation, also transcriptional regulator of dnaA and argK (LysR family)chromosome CDS3183761 894 + 0.579418
iclR SC4066 acetate operon transcriptional repressor (IclR family)chromosome CDS4340560 825 - 0.585455
idnR SC4337 L-idonate regulator (GalR/LacI family)chromosome CDS4638707 999 - 0.503504
ilvY SC3813 positive regulator for ilvC (LysR family)chromosome CDS4051454 888 - 0.583333
invF SC2831 invasion proteinchromosome CDS2996810 762 - 0.464567
kdgR SC1838 putative transcriptional repressor (IclR family)chromosome CDS1953623 792 - 0.493687
kdpE SC0722 response regulator in two-component regulatory system with KdpD, regulates kdp operon encoding a high-affinity K translocating ATPase (OmpR family)chromosome CDS808231 678 - 0.567847
lacI SC3620 putative transcriptional regulatorchromosome CDS3832635 1056 - 0.549242
levR SC3693 putative NtrC family transcriptional regulators, ATPase domainchromosome CDS3910993 2799 - 0.547696
lexA SC4116 SOS response regulator, transcriptional repressor (LexA family)chromosome CDS4393865 609 + 0.545156
licR SC4303 putative phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)chromosome CDS4603996 1851 + 0.540789
lldR SC3617 putative transcriptional regulator for lct operon (GntR family)chromosome CDS3830066 708 + 0.570621
lrhA SC2330 NADH dehydrogenase transcriptional repressor (LysR family)chromosome CDS2454521 939 - 0.527157
lrp SC0913 regulator for lrp regulon and high-affinity branched-chain amino acid transport system; mediator of of leucine response (AsnC family)chromosome CDS1020673 495 + 0.490909
lysR SC2953 positive transcriptional regulator (LysR family)chromosome CDS3133767 936 + 0.582265
lysR SC0136 putative lysR-family transcriptional regulatorchromosome CDS157383 942 + 0.516985
malI SC1482 Maltose regulon regulatory protein malIchromosome CDS1576710 591 + 0.576988
malT SC3447 transcriptional activator of the mal genes, binds inducer (maltotriose) and ATP (LysR familiy)chromosome CDS3630422 2706 + 0.554693
marA SC1537 transcriptional activator of defense systems (AraC/XylS family), multiple antibiotic resistance proteinchromosome CDS1635242 384 - 0.466146
marR SC1538 transcriptional repressor of marRAB operon, multiple antibiotic resistance proteinchromosome CDS1635645 435 - 0.48046
marT SC3680 putative transcriptional regulatory proteinchromosome CDS3896711 858 - 0.472028
mauR SC3394 putative ATPase component of ABC transporter with duplicated ATPase domainchromosome CDS3566342 222 + 0.536036
melR SC4176 regulator of melibiose operon (AraC/XylS family)chromosome CDS4475731 1077 - 0.517177
metJ SC3990 transcriptional repressor of all met genes but metF (MetJ family)chromosome CDS4243507 318 - 0.518868
metR SC3863 regulator for metE and metH (LysR family)chromosome CDS4102802 954 - 0.587002
mfd SC1166 transcription-repair coupling factorchromosome CDS1280258 3447 - 0.570641
mlc SC1506 transcriptional repressor of ptsG and ptsHI, global repressor of carbohydrate metabolism (pts operon) (NagC/XylR family)chromosome CDS1603260 1221 + 0.520066
mntR SC0832 putative Mn-dependent transcriptional regulatorchromosome CDS930863 474 + 0.529536
moaR SC3064 putative response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domainchromosome CDS3243577 684 + 0.44152
mocR SC2736 putative regulatory protein, gntR familychromosome CDS2904414 1335 - 0.569288
mtlR SC3611 repressor for mtlchromosome CDS3821098 591 + 0.534687
nacR SC0712 putative transcriptional regulator, LysR familychromosome CDS797245 927 - 0.560949
nagC SC0703 transcriptional repressor of nag (N-acetylglucosamine) operon (NagC/XylR family)chromosome CDS783578 1221 - 0.533989
nahR SC3659 putative transcriptional regulator, LysR familychromosome CDS3870734 903 - 0.532669
nanK SC3274 putative ManNAc kinasechromosome CDS3459646 876 - 0.592466
narL SC1761 response regulator in two-component regulatory system with NarX (or NarQ), regulates anaerobic respiration and fermentation (LuxR/UhpA familiy)chromosome CDS1879051 651 + 0.534562
narP SC2251 response regulator in two-component regulatory system with NarQ (or NarX)chromosome CDS2360986 648 + 0.526235
ner SC2376 putatiave helix-turn-helix regulatory proteinchromosome CDS2500908 249 + 0.481928
nhaR SC0035 transcriptional activator of nhaA (LysR family)chromosome CDS41673 900 + 0.507778
nikR SC3513 nickel-responsive transcriptional regulatorchromosome CDS3705421 438 + 0.545662
nlp SC3244 regulatory factor of maltose metabolismchromosome CDS3429291 288 + 0.5
ntrA SC2278 putative regulatory protein, gntR familychromosome CDS2393820 696 + 0.387931
nusA SC3228 transcription pausing; L factorchromosome CDS3412340 1503 - 0.52495
nusB SC0459 transcription termination; L factorchromosome CDS515938 420 + 0.52619
nusG SC4032 component in transcription antiterminationchromosome CDS4296419 546 + 0.543956
ompR SC3434 Transcriptional regulatory protein ompRchromosome CDS3613100 735 - 0.557823
oxyR SC4014 regulatory protein sensor for oxidative stress, regulates intracellular hydrogen peroxide (LysR family)chromosome CDS4277449 918 + 0.562092
pdhR SC0150 transcriptional repressor for pyruvate dehydrogenase complex (GntR family)chromosome CDS171374 765 + 0.563399
pduD SC2049 Propanediol utilization: dehydratase, medium subunitchromosome CDS2141372 675 + 0.567407
phnO SC4166 putative regulator in phn operonchromosome CDS4463562 465 - 0.494624
phnR SC0471 2-aminoethylphosphonate transport, repressorchromosome CDS527763 720 - 0.586111
phoB SC0438 response regulator in two-component regulatory system with PhoR (or CreC), regulates pho regulon (OmpR family)chromosome CDS495287 690 + 0.547826
phoP SC1182 response regulator in two-component regulatory system with PhoQ, transcribes genes expressed under low Mg+ concentration (OmpR family)chromosome CDS1300053 675 - 0.511111
pocR SC2044 Propanediol utilization: transcriptional regulation, AraC familychromosome CDS2136138 912 - 0.458333
prpR SC0408 regulator for prp operon (EBP family)chromosome CDS460629 1626 - 0.555351
pspA SC1683 phage shock protein; negative regulatory gene for the psp opreonchromosome CDS1794880 669 - 0.5142
pspC SC1681 phage shock protein; regulatory gene, activates expression of psp operon with PspBchromosome CDS1794237 360 - 0.519444
pspF SC1684 transcription activatorchromosome CDS1795704 996 + 0.542169
ptsJ SC2434 putative regulatory protein, gntR familychromosome CDS2564254 1293 + 0.590101
purR SC1449 transcriptional repressor for pur regulon, glyA, glnB, prsA, speA (GalR/LacI family)chromosome CDS1545608 1026 - 0.545809
ramA SC0612 putative regulatory proteinchromosome CDS681569 342 + 0.502924
rbsK SC3477 putative transcriptional regulator of sugar metabolismchromosome CDS3669672 1215 + 0.416461
rbsR SC3799 transcriptional repressor for rbs operon (GalR/LacI family)chromosome CDS4031625 990 + 0.535354
rbsk SC1403 putative regulatory protein, deoR familychromosome CDS1502550 1227 - 0.462103
rcsA SC1987 positive transcriptional regulator of capsular/exo-polysaccharide synthesis (LuxR/UhpA family)chromosome CDS2089188 624 + 0.387821
rcsB SC2273 response regulator (positive) in two-component regulatory system with RcsC (LuxR/UhpA familiy)chromosome CDS2384233 696 + 0.49569
recG SC3668 DNA helicase, resolution of Holliday junctions, branch migrationchromosome CDS3879181 2082 + 0.580211
relA SC2896 (p)ppGpp synthetase I (GTP pyrophosphokinase)chromosome CDS3062588 2235 - 0.557047
rfaH SC3875 transcriptional activator affecting biosynthesis of lipopolysaccharide core, F pilin, and haemolysinchromosome CDS4117156 489 - 0.492843
rhaR SC3939 positive regulator for rhaRS operon (AraC/XylS familiy)chromosome CDS4193096 849 + 0.501767
rhaS SC3938 positive regulator for rhaBAD operon (AraC/XylS family)chromosome CDS4192107 837 + 0.537634
rhlB SC3820 putative helicasechromosome CDS4058556 1266 - 0.548183
rhlE SC0817 putative ATP-dependent RNA helicasechromosome CDS914182 1362 + 0.586637
rho SC3822 transcription termination factor Rho; polarity suppressorchromosome CDS4060641 1332 + 0.522523
rnb SC1696 RNase II, mRNA degradationchromosome CDS1807477 1935 + 0.557106
rnc SC2576 RNase III, ds RNAchromosome CDS2745289 738 - 0.520325
rnk SC0646 regulator of nucleoside diphosphate kinasechromosome CDS721894 411 - 0.579075
rob SC4431 transcriptional regulator (AraC/XylS family)chromosome CDS4740934 870 - 0.54023
rocR SC2363 putative regulatory proteinchromosome CDS2487283 1428 + 0.520308
rof SC0237 modulator of Rho-dependent transcription terminationchromosome CDS276041 261 - 0.440613
rpc SC1196 regulatory proteinchromosome CDS1312329 780 - 0.435897
rpiR SC3530 Protein rpiRchromosome CDS3726653 882 + 0.378685
rpoA SC3350 DNA-directed RNA polymerase alpha chainchromosome CDS3537742 990 - 0.524242
rpoB SC4037 RNA polymerase, beta subunitchromosome CDS4299811 4143 + 0.541636
rpoC SC4038 RNA polymerase, beta prime subunitchromosome CDS4304030 4224 + 0.544034
rpoD SC3158 sigma D (sigma 70) factor of RNA polymerase, major sigma factor during exponential growthchromosome CDS3338340 1977 + 0.525038
rpoE SC2645 sigma E (sigma 24 ) factor of RNA polymerase, response to periplasmic stresschromosome CDS2796652 576 - 0.508681
rpoH SC3497 sigma H (sigma 32) factor of RNA polymerase; transcription of heat shock proteins induced by cytoplasmic stresschromosome CDS3690041 855 - 0.54152
rpoN SC3258 sigma N (sigma 54) factor of RNA polymerase, pleiotrophic functions (nitrogen metabolism, formate degradation, phage shock response)chromosome CDS3439152 1434 + 0.540446
rpoS SC2856 sigma S (sigma 38) factor of RNA polymerase, major sigmafactor during stationary phasechromosome CDS3020428 993 - 0.523666
rsd SC4046 regulator of sigma D, has binding activity to the major sigma subunit of RNAPchromosome CDS4316325 489 - 0.494888
rstA SC1493 response regulator in two-component regulatory system with RstB (OmpR family)chromosome CDS1589448 732 - 0.532787
rtcR SC3453 sigma N (sigma 54)-dependent regulator of rtcBA expression (EBP familiy)chromosome CDS3638168 1584 + 0.598485
sdiA SC1954 transcriptional regulator of ftsQAZ gene cluster (LuxR/UhpA family)chromosome CDS2062122 723 - 0.48686
sgcR SC1614 putative transcriptional repressor of sgc operon (DeoR family)chromosome CDS1719724 792 + 0.513889
sinR SC0297 transcriptional regulatorchromosome CDS343256 948 + 0.394515
sirA SC1950 putative response regulator (LuxR/UhpA familiy)chromosome CDS2060711 657 - 0.51446
slyA SC1462 transcriptional regulator for hemolysin (MarR family)chromosome CDS1557574 435 + 0.489655
sopB SC1241 SopB proteinchromosome CDS1350920 1071 - 0.498599
soxR SC4145 redox-sensing transcriptional activator SoxR, contains iron-sulfur center for redox-sensing (MerR family)chromosome CDS4438997 459 + 0.544662
soxS SC4144 transcriptional activator of superoxide response regulon (AraC/XylS family)chromosome CDS4438587 324 - 0.515432
spoT SC3666 (p)ppGpp synthetase II/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolasechromosome CDS3876370 2112 + 0.535038
sprB SC2798 transcriptional regulatorchromosome CDS2964494 756 - 0.451058
srlR SC2770 transcriptional repressor for glucitol operon (DeoR family)chromosome CDS2936050 774 + 0.5
srmB SC2648 ATP-dependent RNA helicasechromosome CDS2800126 1335 + 0.54382
ssrB SC1412 Secretion system regulator: transcriptonal activator, homologous with degU/uvrY/bvgAchromosome CDS1513910 639 - 0.397496
stmR SC3061 putative transcriptional regulator, LysR familychromosome CDS3239147 879 + 0.525597
tctD SC2716 tricarboxylic transport: regulatory proteinchromosome CDS2888444 675 - 0.551111
tdcA SC3191 transcriptional activator of tdc operon (LysR family)chromosome CDS3374536 939 - 0.446219
tinR SC0304 transcriptional regulatorchromosome CDS351703 474 + 0.331224
torR SC3742 response regulator in multi-component regualtory system wtih TorS (sensory kinase) and TorT (periplasmic sensor), regulates tor operon (TorR family)chromosome CDS3963674 693 + 0.559885
treR SC4311 transcriptional repressor of treABC (GalR/LacI family)chromosome CDS4612861 948 - 0.560127
trpR SC4428 transcriptional repressor for trp operon and aroH (TrpR family)chromosome CDS4739298 327 + 0.553517
ttk SC3655 putative transcriptional regulator (TetR/ArcR family)chromosome CDS3867585 597 + 0.519263
tyrR SC1676 transcriptional regulator of aromatic amino acid biosynthesis genes (aroF, aroG, tyrA) and aromatic amino acid transport, has intrinsic ATPase and phochromosome CDS1789313 1542 - 0.534371
uhpA SC3710 response regulator (repressor) in two-component regulatory system wtih UhpB, regulates uhpT operon (LuxR/UhpA family)chromosome CDS3930220 654 - 0.571865
umuD SC2001 error-prone repair: SOS-response transcriptional repressors (LexA homologs, RecA-mediated autopeptidases)chromosome CDS2102918 420 - 0.495238
uxuR SC3024 putative regulatory protein, gntR familychromosome CDS3206586 801 - 0.449438
uxuR SC4362 transcriptional repressor for uxu operonchromosome CDS4668730 774 + 0.54522
vacB SC4244 putative exoribonucleasechromosome CDS4545765 2439 + 0.551866
xapR SC2417 regulator for XapA (LysR family)chromosome CDS2547995 885 - 0.501695
xylR SC3597 xylose operon regulatory protein (AraC/XylS family)chromosome CDS3801790 1179 + 0.526718
yafC SC0252 putative transcriptional regulator, LysR familychromosome CDS291802 915 - 0.51694
yafC SC0906 putative transcriptional regulator, lysR familychromosome CDS1013276 912 + 0.575658
yafP SC3587 putative acetyltransferasechromosome CDS3790768 468 - 0.412393
yajF SC0434 putative sugar kinase/putative transcriptional regulator (NagC/XylR familiy)chromosome CDS488460 909 + 0.576458
ybaD SC0456 putative transcriptional regulatorchromosome CDS513802 450 + 0.495556
ybaO SC0501 putative transcriptional regulator (AsnC familiy)chromosome CDS560625 459 + 0.51634
ybbS SC0555 putative transcriptional regulator, LysR familychromosome CDS619171 963 - 0.521288
ybcM SC1034 bacterial regulatory protein, AraC familychromosome CDS1153360 780 + 0.54359
ybdM SC0635 putative transcriptional regulatorchromosome CDS708600 618 - 0.514563
ybdO SC0014 putative transcriptional regulator, LysR familychromosome CDS15015 948 + 0.405063
ybdO SC0637 putative transcriptional regulator, LysR familychromosome CDS710591 903 - 0.390919
ybeF SC0663 putative transcriptional regulator, LysR familychromosome CDS738580 954 - 0.502096
ybiH SC0816 putative transcriptional repressor (TetR/AcrR family)chromosome CDS913278 675 - 0.527407
yccR SC1024 putative DNA transformation proteinchromosome CDS1143714 606 + 0.49835
ycdC SC1072 putative transcriptional repressor (TetR/AcrR family)chromosome CDS1185806 639 + 0.549296
ycfQ SC1163 putative transcriptional repressor (TetR/AcrR family)chromosome CDS1277914 636 - 0.542453
ycfX SC1170 putative regulator (NagC/XylR family)chromosome CDS1287208 912 + 0.564693
ycgE SC1277 putative transcriptional regulatorchromosome CDS1379815 849 + 0.462898
yciT SC1699 putative regulatory protein, deoR familychromosome CDS1812043 753 + 0.501992
ydcI SC1620 putative transcriptional regulators, LysR familychromosome CDS1727983 993 + 0.53575
ydcN SC1602 putative oxidoreductase/putative repressorchromosome CDS1708827 537 - 0.530726
ydcN SC1660 putative transcriptional regulatorchromosome CDS1771052 603 - 0.514096
ydcR SC1595 putative regulatory protein, gntR familychromosome CDS1701542 1425 - 0.530526
ydeW SC3963 putative transcriptional repressorchromosome CDS4215327 960 - 0.505208
ydfH SC1527 putative regulatory protein, gntR familychromosome CDS1626144 687 - 0.50655
ydhB SC1448 putative transcriptional regulator, LysR familychromosome CDS1544679 933 + 0.569132
ydhM SC1456 putative transcriptional repressor (TetR/AcrR family)chromosome CDS1551771 537 - 0.558659
ydiP SC1374 putative transcription regulator, AraC familychromosome CDS1471844 891 + 0.425365
ydjF SC1313 Hypothetical transcriptional regulator ydjFchromosome CDS1409746 759 + 0.421607
yeaM SC1290 putative regulator (AraC/XylS family)chromosome CDS1387816 795 + 0.550943
yebK SC1893 putative transcriptional regulatorchromosome CDS2002744 870 + 0.512644
yebY SC1878 putative periplasmic or exported proteinchromosome CDS1989555 354 - 0.533898
yeeY SC2079 putative transcriptional regulator, LysR familychromosome CDS2168784 915 - 0.52459
yegW SC2160 putative regulatory protein, gntR familychromosome CDS2261997 747 - 0.527443
yehT SC2174 putative regulatorchromosome CDS2276259 720 - 0.508333
yehV SC2176 putative transcriptional repressor (MerR family)chromosome CDS2278883 732 + 0.540984
yeiE SC2217 putative transcriptional regulator, LysR familychromosome CDS2323062 864 - 0.552083
yejH SC2240 putative ATP-dependent helicasechromosome CDS2348398 1761 + 0.570698
yfaX SC3463 putative bacterial transcriptional regulatorchromosome CDS3651283 756 - 0.505291
yfaX SC2295 putative transcriptional regulatorchromosome CDS2413714 783 - 0.51341
yfeR SC2422 putative transcriptional regulator, LysR familychromosome CDS2552371 927 - 0.564186
yfhH SC2567 putative ABC superfamily (membrane) transport proteinchromosome CDS2738050 849 + 0.566549
yfhP SC2538 believed to be involved in assembly of Fe-S clusterschromosome CDS2703539 495 - 0.557576
yfiE SC2649 putative transcriptional regulator, LysR familychromosome CDS2801478 945 - 0.506878
ygaA SC2772 putative regulator (EBP family)chromosome CDS2937786 1515 - 0.59868
ygaE SC2726 putative transcriptional repressor (GntR familiy)chromosome CDS2899135 678 + 0.564897
ygaV SC2729 putative regulatory protein, arsR familychromosome CDS2900724 300 + 0.513333
ygbI SC0164 putative transcriptional regulator (LysR family)chromosome CDS189514 768 + 0.550781
ygbI SC2849 putative regulatory protein, deoR familychromosome CDS3015443 765 + 0.556863
ygiP SC0378 putative transcriptional regulator, LysR familychromosome CDS421201 966 + 0.489648
ygiV SC3119 putative bacterial regulatory helix-turn-helix proteins, araC familychromosome CDS3300078 867 - 0.575548
ygiX SC3121 putative transcriptional regulator (OmpR family)chromosome CDS3301407 813 + 0.527675
yhaJ SC3181 putative transcriptional regulator, LysR familychromosome CDS3362075 897 - 0.567447
yhcK SC3278 putative regulatory protein, gntR familychromosome CDS3463888 792 - 0.525253
yhcS SC3305 putative transcriptional regulator, LysR familychromosome CDS3488029 930 + 0.535484
yhgF SC3436 paral putative RNase Rchromosome CDS3614617 2331 + 0.585586
yhhK SC3493 putative acetyltransferasechromosome CDS3687267 384 + 0.554688
yhhY SC3476 putative transferasechromosome CDS3668920 489 + 0.546012
yhjB SC3540 putative transcriptional regulator (LuxR/UhpA familiy)chromosome CDS3738031 558 - 0.492832
yiaC SC3575 putative acetyltransferasechromosome CDS3780692 441 + 0.514739
yiaG SC3580 putative transcriptional regulatorchromosome CDS3786641 291 + 0.463918
yieP SC3801 putative regulatory protein, gntR familychromosome CDS4034019 705 - 0.512057
yifA SC3804 putative transcriptional regulator, LysR familychromosome CDS4040691 849 - 0.517079
yihW SC3915 putative glycerol-3-phosphate regulon repressor (DeoR family)chromosome CDS4169655 804 + 0.539801
yiiD SC3919 putative acetyltransferasechromosome CDS4172545 990 + 0.544444
yijC SC4016 putative transcriptional repressor (TetR/AcrR family)chromosome CDS4279948 636 + 0.558176
yijO SC4007 paral putative regulator (AraC/XylS family)chromosome CDS4266664 852 - 0.562207
yisR SC3603 putative bacterial regulatory helix-turn-helix proteins, araC familychromosome CDS3807351 816 - 0.540441
yjaB SC4060 putative acetyltransferasechromosome CDS4333596 438 - 0.481735
yjdC SC4200 putative bacterial regulatory protein, merR familychromosome CDS4501471 576 - 0.517361
yjeB SC4243 putative negative regulatorchromosome CDS4545239 489 + 0.470348
yjfQ SC4255 putative transcriptional repressor (DeoR family)chromosome CDS4557639 756 - 0.544974
yjgC SC1671 putative transcriptional regulator, LysR familychromosome CDS1783079 906 - 0.551876
yjgJ SC1668 putative bacterial regulatory helix-turn-helix proteins, araC familychromosome CDS1780461 591 - 0.576988
yjgM SC4329 putative acetyltransferasechromosome CDS4628939 516 - 0.525194
yjiE SC4366 putative transcriptional regulator, LysR familychromosome CDS4672745 909 - 0.524752
ykgD SC0600 putative transcriptional regulator (AraC/XylS family)chromosome CDS669410 855 - 0.589474
ymbI SC0762 transcriptional regulator, lysR familychromosome CDS855098 891 + 0.350168
ynfL SC1505 putative transcriptional regulator, LysR familychromosome CDS1602233 900 + 0.572222
yoaA SC1815 putative DNA helicasechromosome CDS1933690 1911 - 0.562533
yqgE SC3036 Protein yqgEchromosome CDS3217521 636 + 0.52044
yqhC SC3107 putative transcriptional regulator (AraC/XylS family)chromosome CDS3283806 921 - 0.508143
yqiR SC0681 putative sigma-54 dependent transcriptional regulatorchromosome CDS757089 1929 + 0.499222
yrbA SC3246 putative transcriptional regulator (BolA family)chromosome CDS3430950 294 - 0.5
ytfH SC4277 putative transcriptional regulatorchromosome CDS4576636 387 + 0.563307
yurK SC3536 putative regulatory protein, gntR familychromosome CDS3733092 720 - 0.488889
yvbU SC2284 putative transcriptional regulator, LysR familychromosome CDS2400818 879 + 0.476678
ywbI SC4149 putative transcriptional regulator, LysR familychromosome CDS4444003 888 - 0.559685
ywfK SC0854 putative transcriptional regulator, LysR familychromosome CDS959928 648 - 0.410494
zntR SC3347 Zn(II)-responsive transcriptional regulator (MerR family)chromosome CDS3536406 426 - 0.481221