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# Haemophilus ducreyi 35000HP, 35000HP

>HD1374 conserved hypothetical protein
MRCPFCTAEETKVIDSRLAADGYQIRRRRECIGCKERFTTFESAELALPY
IIKNNGNREPFDLNKLEVSLNRALEKRPVHADDVDNVISKIIFQLKALGE
REVPSKSVGHLAMDGLKQLDKVAYIRFASVYLSFDDIEEFTKEIEKLRE
>HD1533 conserved hypothetical protein
MSREKLNTTQRALRILKALKGRSLTGLTNKELCEAIGETPVNVTRAIAFL
EAEGFVQRLNTGAYGLSYQILQIAVSHETEMQKASERLAQVRARVQAGAF
>HD1096 hypothetical protein
MEIFEKIRSLRKNHNLSQEEIADKINLSVSGYRKIENGKSRINHKRLEQI
AEALEVSPLDLIPNSWRHGSSVYQVGKNGFYGDSSRAIEIELLKQQIKQE
QLIKAKDETIEDKNRLISRLEEMLKILNT
>HD1694 hypothetical protein
MRISERLRLICEHNHWKIKDFSELTGLPYRTIQGYIGGEREPNAEGMAAI
AKVGVNLNWLVSGEGEMFKGTEQQADLNQAEIELLNQYRAMSNELQKAIE
VSFKAINTELK
>HD1595 transcription regulator, GntR family
MQLNDKLPSKRRLSEHLQISQNTVERAYAQLLAEGYIESKARSGFLVCFQ
SEHTYPTTCYSKKITKITASTNYLLDFNPNKIDIDHFPLKQWKKCANLDH
NTWLNSGDPQGDLNLRQQISQYLLASRGVHCEAEQIIIGAGVESCLQRLI
LLFQQLQPQMNWTMESYGYTTVEKLLNLYHKPIIKMPFSTENYPLDIGFL
TQNKIDIAYLTPSHLYPFGHILTINQRQSLLEWAIAKTGRYIIEDDYDSE
FRYQGKPIPSLQSLDNHGKVIYLGSFSKLLMPSLRITFLVLPKTLLNAYQ
QYCGFLNVTVSRLEQQRLAKFIQTGEFEKHINRMRKVYRRKMELLCQLLM
PYSYCIRYYGEHSGFYLLIELYNETRSLAKLVQLAETHRIKVYPIEYQNK
KLFSLGFGHLTEAQLRKGITQLFDCWQIKPHAV
>HD1917 probable RNA polymerase sigma factor
MSEVEQLNSITPKRIEEIRLQMMKFAILQLKDADLAEDVVQEALVSAYKN
AHSFRGQAALKTWIFAILKNKIIDLIKQRKRLVNISELVEEESPNQFFDQ
TGYWAADNYQPKEWQDVNQLNYKKEFWAIFDICLNKLPAQQARIFMMREH
LELTSEQICQKCEISTANLHVILHRARLQLQACLTKNWFDGEKD
>HD1380 putative transcriptional regulator
MSARGKILDTIGALQTSLTKTEKKIAAAILAQPAILNQSSLSEVAKQLDV
GEATFIRFCRTLGFKGYTDFKLDLAIELATQEKESNSIFDTDVSESDSAK
EIAVKLQSSLNNVIAETINLLDFKELENVVAELQKAQRIFLFGVGSSGLT
AEDAKHKLMRIGLQTDAVTNNHFMYMQASLLCQGDVVIGISHSGHSQEVI
SALGIARNNHAKTIAITHYIRSPITNVADYVLINGNRQGHMQGDSIGTKM
SQLFVLDLIYVLLVKAAPEKSIQHKQKTLDVILEQRLQHNRR
>HD1565 hypothetical protein
MRTESYSYGQGAVYLAERLPNGQPGAFRWVGDVSELSVSLSVEEFTHKES
YSGQRQEVKKIITGKSGEVLIKFHEMSKENLSLMLLGEASTIKAGNVTKE
ALPDDIKAGDRIALAHQNVSDVKIAELKENTDFVVDAIFGTIEFLKEQKS
KKLTVDYNYGDVDVIALLTTNPKDLFLRFEGINLAETNEWNLVELYKINF
NPTEALNLINNENALDALSAKAKVLADTTKAGDSTLGRFGRVVKIKK
>HD0913 hypothetical protein
MFVKTINVRGLEPQVLARMQELAQQNERSLEGEARLAIRQWCQPQQNQSV
SPLDEYKQTLSTRLQGGLNMVNQIAHNPLSYSDIAEKLGHNNPTQVNAWF
TGEALPSFNEMEQLSFLFGCNANWLKHGVGELYQRHFYNIAKQPPIFFAR
DFLNTMLDSSPVYKLHIVLNENTGYVYLIQEFEQTHFCYTYLSSSFYLKG
EYGSSGLVNAARFILMLLALDRLSSKVIIKGYTIEDKFAKALFERGEKHP
LLFRSYSKESTWNEDIIDKNYPMSYWEGYKTLQQQVHEYIDNDELLTKYK
KEILCSYD
>HD1538 hypothetical protein
MKDTVKTITQVKQEFYEKGLTFQQWAKENGYDRTYVSMVLNGRIKATHGK
GHEIAVKLGLKAAA
>HD1863 probable DeoR-family transcription repressor
MNENFRHKKLLSILEAKQMLSTLEIMELLNVSPATARRDINKLSEQNKLR
KVRNGVEAIHSCIVQVSEPTTITQLAEKTRIAKMASNLCRDDDSIIMTCG
TTMQLLGQQLCGRNVQIITNSLPLANYLIEQHDDVVIMGGQYNKEKKVTL
SLNQQKEFVYAANIMFTSGRSFTTDGLFKTDMIIANSEAQMSYKANKYVV
LLDSSKLDAEVGMLFRDIRKIDLLITGKEADATVIKKLREQGLEIMLA
>HD1063 conserved hypothetical protein
MASIRSLTRELPYQPIRMYRDLNTERSIKLDLNSLCIKRPTETFFIQVKN
PHLIAWGIELDDLLIVEQPYSYLINDLLVIEKNNEYKFYQFFNEIENKTG
QKEKILFSLDVSEPNLHIQDWQSIKIAGVITNVVHQIRHRTAPKSNRKYI
A
>HD2030 hypothetical protein
MLLCVDMAKMAKNQAMINTALLEVEVDWQDIFDFEPLVTSFFIQQGVQNV
RELLKLTYQQLYFEPSFSAETLFKTFTQINQYLIHHFPVTLFTLFYPPIF
AEREVKLTLKYFTDLPVRTLNLIKKQPINTVKQALDFIFSDLATCKGISQ
KTVIHSQIEAIRHIQFYSNLSTPDFDKLIFQDVIFIAPQPSLIDHFKQVI
TLFFTQVYQSKHKERDRQILFRRYGLETHSIETLEHIGHSLGLTRERVRQ
ISNMLEEQLQLFLRGEYRINKPATKRLDNSVIDYYYQITQKLTQHHLITC
SQFPEFFQEQHYSLLLMHILGYQQIYRQLHHYHFKDYFFTNLAKDQLDYI
LENIQRALYDEFKDIQLETVLDYFDTLAIDFLSVTELCLLLDNLVGIRLE
RGKIHREINTYRNFGDIVYRLLLEKQQPTSLKAIAHLMIEKMGALRDEER
LVRSIASQMSQDPRFSPMGKSGVWTLTEWHIANKNIKTLIVESLTKYGLL
SQQQLFELIKQQRKVSMNSIKIYLSEAEFVCEDKLWRLRRPNEPLILKTK
RKLPNNQQFYQLILTFFNDNDQQITPLTELINYLASQTDYKASSIRQKLK
QFNGNVLEYLTPDINNNVFVQLKAGEHSLVAFHQDLRHQIQQHIREILAE
LSQPLTKGELYQYVLARINCIKQTFYAYLAEMSDIEQYKQGSKYYVCAKK
RSNAE
>HD1287 probable ATP-dependent helicase
MMKNDKIIHTFSEQGLLSSKIKGFRPRAAQLEMALAVGKAINFATSVVVE
AGTGTGKTFAYLVPALLSGKKTIISTGSKNLQDQLFKRDLPTIQQALKYK
GRVALLKGRANYLCLERLDQVIAMGVVGDRTVLADLEKVRQWQSSTHTGD
LSECTSIAEDSAILPQLVSTTDSCLGAECPQFKECYVVQARRTAMESDVV
VVNHHLFCADMAVKESGFGELIPEAELVIFDEAHQLPDIASQYFGQSLTS
RQLFDLCKDCQTVYRTELKDVAQLGKAAEHLQKVIQDFRLLMGVEGSIRG
NLRELLADQKVVNGLTKIAENIEFLQEVIKKSLGRSETLDKIFERLAEVK
VQLQKLSNTSIVGYCYWYEANGRYFGLHITPLTVADKFGEQLKKQQIGWV
FASATLEVGGQFDHFCQRLGIENAEQIVLPSPFDYANQSLLCVPRYLPDT
NKSHTLTTLGNMLMPVIEANNGRCFLLCTSYSMMRGMADFLREHSQLSVL
LQGETSKARLLAQFITEKNSVLVATQSFWEGIDVRGDALSLVIIDKLPFT
SPDEPLLKARMEDCRLQGGDPFNDIQIPEAVITLKQGVGRLIRDVTDKGV
VIICDARLVMRQYGKTFLESLPPSSRTRDLAKVIQFLKK
>HD1985 possible DNA transformation protein
MKNIEKELENLRTIFRSIGLIKFKPYFSYMGLFKDDTMFGLYKEKCLYLR
KSDQYLQEIKDTIPIHFLSDHKISRQSKIFYLVPQHIIENISSYSHWITS
SISEYQRLRSKIRTENQTKIRILLNMNINIERLLARVNINTVDEFKQVGE
TKAFVRLIQQGFEVNQLLLFKLYGALQHKYIYMLSLEEKKRLLEQADSAL
YDAGLRKRFTV
>HD0089 probable transcription regulator
MKIKFKNTSLIGNRIRDEREKAGRSRNELADTLGLSLSTLQLWETNEREP
QASMIITIAEELGVSPSYLLTGETEEGEVKTPVAKTQPTQQIQDISMINS
FETISVSAGFGSFNEGVTEPDGQVPYDDELLRKLGVKPRHCAVFWASGNS
MQPTIDNGDQLLVDLDRKDIKSDSVYLVQNGTSVWVKRVKVRWNSVELIS
DNKEEYDPIILTTTDAENLQVIGQVVHIGKILI
>HD0317 transcription accessory protein tex homolog
MTALNHQISQIIATELYVGTHQILAAIKLLDEGNTIPFIARYRKECTGAL
DDTQLRHFETRLIYLRELDDRRQTILKSIEEQGKLTAELHLKIEQTASKT
ELEDIYLPYKPKRRTRGQIAIEAGLTPLAETLWADPTQIPEELAKTFINA
EKGITDSKSALDGARYILMERFAEDATLLAKLRQYLTAYATLQSCVIEGK
AEEGEKFRDYFAHSEPFKTVPSHRALAMFRGRNEGILSLSLNADPEQDTH
VTVSQCEIIIRDHLGIIFNNQPADKWREQVIAWAWKIKIALHLETELMAS
LREKAEEEAINVFARNLSALLMAAPAGAHNTMGLDPGLRTGVKVAIVDNT
GKLLATDTLYPHTTGKAAAEVRLYQLIQQYNVELIAIGNGTASRETERFT
KEVLQQVKASKPTMLIPQTVVVSEAGASVYSASELAANEFPELDVSLRGA
VSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQSQLARKLDAVIEDCVNA
VGVDLNTASAPLLARVAGMTKTLAQNIVAFRDKNGRFNSRSDLKKVARLG
PKAFEQCAGFMRIIDGKNALDSSSVHPEAYPVVEKILQATNCTLAELMGN
TKAIQHLDAQRFVDEQFGLLTVNDILKELEKPGRDPRGEFKTAHFMDGVE
EIKDLKVGMLLEGTVTNVANFGAFVDIGVHQDGLVHISMLSNSFVDDPHK
VIKVGDVVKVKVLEVDIARKRIALTMRLDEQPSTTEKPKTSGQINIKNRK
NDRNQFSNNAFADALKSWKNNR
>HD1613 hypothetical protein
MCISDRLKQILEAKNMSIREFSDVTGISYRSAMNYLNEGRDPSVDGLVKI
HNALGISITWLLTGNGAMYQAITQESDMSNQEEKLIADYRAMPENLKEAF
AISFKEISEKK
>HD0498 putative phage anti-repressor protein
MKNLSIQTFTGSLQNQPTQLINARDLHQLLQVGKDFSTWIKDRIANYGFQ
ENLDFSLVSGETRPPNWGSKIWGGQNKIDYHITLDMAKELCMLERSDLGQ
QARRYFIKMEKEALAARQLTQALPPVKNTVEIPTAKYIELLETQNQLLKQ
TLKPANYKLRLSQEEKSRILSLHQQGLSTGQIVKQTVRSESAVRGVIKG
>HD0479 possible DNA-binding protein
MARQIIFAFYLGFFMELAITREDMGIRLIEERTRLGYSQANFAHQTDISR
EALRLNELGRSGISAEFLGRAAQLGVDVQYVITGVRAQLDNTSTPTQQNV
EGSNNNVIYGEKGIINSGTINNITTEKYTTKTKAVVSPDERHISEETARR
LQDLVKEIVELEQKVKAKPKTFQAVWASLNKHCGVTTYRLIPIENAEKAV
SYLRKWIGRLSSSKSAPKKVGNEWRSKKYAYIKINTKGLESWLKEHLQTK
YSVGSITELSDDQLDKVYRSVSNKKRQASK
>HD0523 hypothetical protein
MRTESYSYGQGAVYLAERLPNGQPGAFRWVGDVSELSVSLSVEEFTHKES
YSGQRQEVKKIITGKSGEVLIKFHEMSKENLSLMLLGEASTIKAGNVTKE
ALPDDIKAGDRIALAHQNVSDVKIAELKENTDFVVDAIFGTIEFLKEQKS
KKLTVDYNYGDVDVIALLTTNPKDLFLRFEGINLAETNEWNLVELYKINF
NPTEALNLINNENALDALSAKAKVLADTTKAGDSTLGRFGRVVKIKK
>HD0254 conserved hypothetical protein
MEPTQLAEILRNALPNAVEIHAQGENSHYGVIVVSDELAQLSKVKQQQAV
YAPLSEYFATNAVHALTIKVFSTEQWKKERFLNVAS
>HD1794 conserved hypothetical protein
MFGNLQGKFIIATPEMDDEYFDRTVIYICEHNDNGTIGVIINTPTDLSVL
ELLTRMDFQMAKPRIYTQDQMVLNGGPVNQDRGFIVHSKTDHEFTHSYKV
TDDITLTTSGDVLDSFGTQTAPEKFIVCLGCSTWKPHQLEQEIAQNYWLL
SEANNQTLFETSYLDRWVEANEMLGISGILAPAGRA
>HD0698 possible tetR family transcriptional regulator
MSNLGVRALQKEKTRRALVDAAFNQLSAEKSFSNLSLREVAREAGIAATS
FYRHFKDMDELGLAMVDESGLLLRQLMRQARKRIAFGGSIVAVSTETFFE
LIADRPNVFRLLLRESSGTSQAFRTAASREIQHFIAELTDYIMTKDPNSC
REIAYIQAEGLVTIVFTAGAYALDMNTQEREKLKKRVIMQLRMLARGAAS
YTYSHKRN
>HD1540 hypothetical protein
MNTKERFNCLISVLGFKTVKDFAENVGISQARLVDVMRERQKIPQDLVVT
LLTDFDVNANWLIAGVGEMFIDGKFETTLTPQEQLLLDDYRESNEQGKEA
IEKTAQALSAVNKLLQSSENTTKKQSSSHTEMHIGEVKQQNNIQHLEGGI
TFKEGD
>HD0912 hypothetical protein
MLDISMFNSSFDVKKHYSDNIKKYVKSRLDYFHSPNFIVISGSIATGKST
LIAELTKHEHYNLIERGKDFCEMVKGETTDTLCIDLVDSYELENVLRYLV
SMKNKVIITTISYDYLVQTRNWAPFIEAQMTKLKMRNAPVHLKLTRENIV
AESIF
>HD0292 hypothetical protein
MGINERLRHVIEAQKMTIKGFAETVDIPLRSVHNYLSGEREPSADALTKI
SNKLNINLNWLLLDQGEMYLNQSSDLTLNADEMNLLTQYRQTHDSGKRIL
QATSKIILDELK
>HD1080 conserved hypothetical protein
MKLTSRGRYAVTAILDIALHGKSLPVSLADISERQAISLSYLEQLFAQLR
REGIVHSVRGPGGGYQLGKSPAEISVGMVISAVSESLDVTKCKGNGNCSK
NSQCLTHHLWERLEDQIGVFLNTITLAELAEEHAGHDCNKAHCHDHSYKH
>HD0278 arcA, aerobic respiration control protein ArcA
MQNPQILIVEDELVTRNTLKSIFEAEGYEVFEASDGTEMNTILAQQTINL
VIMDINLPGKNGLMLARELRENTKMALMFLTGRDNEVDKILGLEVGADDY
ITKPFNPRELTIRARNLLHRTMLEKDKVSHSEQQESYRFNGWTLDVNSRS
LITPEGEINKLPRSEFRALLHFCENPGKIQTREDLLLKMTGRELKPHDRT
VDVTIRRIRKHFEDHLNTPEIIVTIHGEGYRFCGQIE
>HD0262 argR, arginine repressor
MEKLDRLSEAFKMLLKQEKCSSQSEIVTALQALGFKNINQSKVSRMLSKF
GAIRTRNTKMEMVYQLPTELSIPTTSSPLKNLVLDIDYNEVLIVVKTSPG
AAQLIARLLDSMGKSEGILGTIAGDDAIFITPTHSTPMETLIKNITTLFE
SSF
>HD1911 asnC, transcription regulatory protein, AsnC
MDPLDKQILDALVKDARTPYVEMAKNFSISVSTIHVRVEKLRQAGIIEGA
KIRLNARKLGYDVCCFIGIILKSAKDYERVITKLRDFEEVVEAYYTTGNY
SIFIKVMTHTIEELHHVLATKIQLIDEIQSTETLISMQNPILRDIQP
>HD1469 cpxR, transcriptional regulatory protein CpxR
MPRILLVDDDLELTELLAELLSLEGFHIHCVHNGQDALTELELQSYDLIL
LDVMMPILNGIETLKQLRQKYAIPVLMLSARDDEIDRVLGLELGADDYLP
KPFNDRELVARIKAILRRTVAPNLSDVVTPSNHSPEDSNKQLSFGGVELH
PGRQQAIFEDQDLDLTGTEFALLQMLMHNPGQILSRELLSLEVLGKRLTP
YDRAIDMHISNLRKKLPERNDNLPWFKTLRGRGYLLVTEK
>HD1008 cspC, cold shock-like protein CspC
MSKATGIVKWFNSTKGFGFITPDLGGKDIFVHFSGIIGSNFRTLEEGAKV
EFEVQDSDRGPSAVNVKAL
>HD1366 cspD, cold shock-like protein CspD
MHIGIVKWFNNVKGFGFITCDTVEGDIFAHFSEIKQDGYRSLKVGQKVQF
ELVTNERGASATHISTIE
>HD1030 cysB, cys regulon transcriptional activator
MKLQQLRYIVEIVNQNLNITEAAEALYTSQPGISKQVRLLESELGINIFE
RNGKHLKGLTPAGAKIVSIARELLVKEQSIKSVAEEQTCPNYGMLRIATT
NTQARYMLPSIIEKFKAKYPAVSLHLCQGSPSQIYDALMAGEVDLAIITE
AQYLFEEAILLPCYLWNRSVIVKPDHPLAKFANQSHHLTVKELSQYDLIT
YTFGFTGQSDLDHAFNKAGIVPKIMLTATDAGVIKTYVRLGLGAGIMASM
AYTASDHDLVAIDASHLFQPSMTQIAFNRGTFLRNYMYDFINYFSPHLTK
MQVEKAEQLRDKNAILRLFETTQLEEK
>HD1590 deaD, cold-shock DEAD box protein-A
MTNNTLTFSDLGLPQSILDAVNDMSFVTPSPIQQECIPHLLAGSDVLGMA
QTGSGKTAAFSLPLLAQIDPNQRHPQMLVMAPTRELAIQVADACEQFTKN
MKGIRVVTVYGGQRYDIQLRALKQGSQVVVGTPGRILDHIRRGTLNLSTL
KSIVLDEADEMLRMGFIDDVETVMAELPEKHQTALFSATMPEPIRRITRR
FMSDPKEVKIQATQRSAPDITQSYWLVNGFRKNEALLRFLEVEEFDAAII
FTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILV
ATDVAARGLDVERISLVVNYDIPLDSESYVHRIGRTGRAGRSGRALLFVE
PRERRLLRNIEQLMKKPIDPVAIPNHQVLMEKRREKFKAKISKQLEHHDL
EKYRELLENLFTADQDHEELAAAMMMLQEKQKLILPPDPEVRNLRSERGR
RDRNERNDRRNGREHRENNGVAMDLYRIELGREDGVEVRHIVGAIANEGD
INSRYIGHIKLHDRYSTIELPKGIPNHIVQHFAHKARVLNKQMQMSLLGP
AGGANNQPFEERRGSRRDQRNSGRNSRPNYREDSFNKERKNTGFKEKRFN
NKSSRD
>HD1727 fadR, fatty acid metabolism regulator protein
MMLWRCRTMDNTYILKARSPAALAEEYIVRSIWDKRFPAGSDLPAERELA
DKIGVTRTTLREVLQRLARDGWLNIQHGKPTKVNDVWETAGPNIISTLIK
LDKSYIPVIIANVVSLRTRMAESYIPEAIKLNPAQCCPLFAQLDTLEDTA
EAYATFDYNLFRQLTFLANKPVYALILNSFKQMYHQVANLFFADPTCRQL
SLSFYRLLLSACVEENHEKAIQVLVDNRQLSSEIWVKLLQTLPEQFGV
>HD0449 fis, DNA-binding protein
MLEQQPAQNPLTVSMLNAQAQQVNKPLRDNVKAALKNYLSQLNGEDPTEL
YELVLSEIEHPMLDMVMQYTRGNQTRAATMLGINRGTLRKKLKKYGMG
>HD1028 gcvA, glycine cleavage system transcriptional activator
MNKKLPPLNALKAFESAARHLNFTKAADDLFVTQAAVSHQIKLLEDFLGV
PLFYRRNRLLELTEIGRQYFEEIQPLFQQIALSTEKIKLKNSRQILSIST
TPSFGMHWLVPRLNEFHHKYPDIEVRLVTAAQDEGLLGKDIDVAIYYGSG
NWQNLEAVKLVQARIMILASSEYLQRNPMTKPEDLTGKNLIHVCSHTKWK
QMVEYLQLTNVDTESGPMYSNTSMAIQAAKHSQGVVVANCILAQAEINEG
SVIEPFATEVYDEKAFYVVYPTQMSDIVKVQHFVEWITQEIEGNYKE
>HD1648 glpR, glycerol-3-phosphate regulon repressor
MKQSIRHNKIIELVNQLGYVSTEELVAQLAVSSQTIRRDLNELAEKNLLR
RHHGGAGMPSNNENSDYSERKKFFSAQKNIIAQQVAEMIPNGSSLFLDIG
TTSEAVAYALLSHQHLRIVTNNLNAAHILMQKDDFQITIAGGDLRADGGI
IGEATVNFISEFRLDFGILGISAIDQDGSMLDYDYHEVQVKRALMQSSRQ
VILVTDHSKFNRRAIVRLGNISEVNYLFTDLPLPLELQQYLAPTNVTVYI
CNN
>HD1699 greA, transcription elongation factor
MKQIPMTVRGAELLREELEFLKNVRRPQIIDAIAEAREHGDLKENAEYHA
AREQQGFCEGRIQEIEGKLGNAQVIDVAKMTNNGKVIFGATVGLVNIDTD
EEVTYRIVGDDEANIKEGLISVNSPIARGLVGKSVDDSVSIITPGGKVEF
DIISVEYQ
>HD1167 greB, transcription elongation factor
MAKSNYITRAGWQALDQELKYLWKEERPKVTQSVSEAAALGDRSENAEYI
YGKRRLREIDRRIRFLSKRLEALQIIDYHPQQAGKVFFGAWIELENNEGE
INQYRIVGCDEFDPTKNWISIDSPVARALIGKCVDDEIEVQTPTGKAVFY
INKIWYDTKSLY
>HD1764 hepA, RNA polymerase associated protein
MFIIGQRWISESENNLGLGIVTARDNRTVTIRFPAAEEERIYALAVAPLI
RVQFQKGDRINCIDGWQLDVEDVLDNQGFVIYLGSRVDNGEQVALPEMQL
DHKVSFSKPQDRLFSAQIDRSDRFALRYRALQHQQAQFQSPLRAMRGIRA
SLIPHQLHIAKEVGQRVAPRVLLADEVGLGKTIEAGMILQQQLFSGRVER
VLVLVPESLQHQWLVEMLRRFNLNFSLFDEERCSDFDKTDEDGNDISENP
FESEALVIASIDWLEKATTRATQVLLADWDLLIVDEAHHLVCSATESSQA
YQFVARLAKKITAVLLLTATPEQLGLDSHFARLALLDPDRFYDYATFIAE
QKAYKPVADAVANLLNDKPLNDMAKNAIAELLSEQDTEPMFKIINSEKSA
ESDRLQVRQELINALIDRHGTSRVLFRNTRQGVKGFPHRVYHQITLEMPD
QYANALNVRAMMGSMEPQDHFYPERLYQCLNSQAPMGNRWEDFDPRIAWL
MTFLKNHRDEKVLIICKQAEIAITLAQVLREREAIRTAVFHEHMTIVERD
RAAAYFAQIEEGAQVLISSSIGSEGRNFQFARNLVLFNLPDNPDLLEQSI
GRLDRIGQKNDIQIYVPCFKNSMQIVLAEWYHRGLNAFEETCPMGSNLFA
EFSETLQSFFNDPQATGFEEFIAKTSKRRQQLKMELEQGRDRLLELNSNG
GETAQALAEAIAQEDNNPHLVNFALNLFDIIGLEQEDLGEKLIALNPTGH
MLVSDFPGLSEEGTTITFDRQLALMREEIELLTWDHPMIRHGIDLITSGD
IGKCAISLLINKNLPAGTLLLEAIYVVEAQAPKSLNLTRFLPPTPVRVLL
DSKGNDMASQVAFTSLEKQLKPVNKQMANKIAKMAQTQIKKLIMLSEQKI
ETKAQAIIIAAKQQADNVLSAELHRLTSLQAVNKNIRADEIELLEHLKAE
SLAQLTQANWRLDSLRVIVSNKA
>HD1101 kdkA, 3-deoxy-D-mannooctulosonic acid kinase
MPMIHYIFNREIVPPAIEPLLKQLFSGQNFTQSDRLLGYSKGRGITWFLN
TQAELGINIVLRHYYRGGLFGKVVKDRYLFQRIDQTRAVQEFNLLTQMQR
WHLPVPRPIAVEINKQSIFYRAKIMLEKIEHTQDLSKLLQTQPLVAEQYQ
QLGQLIRQLHDHQIHHSDLNIHNILLDDNGKFWLIDFDKCCIKAGEEWKQ
ANLNRLLRSFHKEQTRLGIQFHQQNWQSLLTGYQQHNQGDNR
>HD0545 lexA, probable LexA repressor
MSRKHLTARQQEIFDFLKHHIDTTGMPPTRVEIAREIGFKSPNAAEEHLK
ALARKGYIEMLSGTSRGIRILINNDNEDVTQDLSLPLIGKVAAGTPIMAI
EHVESHYPVNGAMFNPNADYLLKVNGNSMEKIGILDGDLLAVHKTNFARN
GQVVVARVEDEVTVKRLEKKGELIYLHPENDELQPIIVDPRLKYIEIEGI
AVGVIRNNAWM
>HD1477 lrp, leucine-responsive regulatory protein
MEYKKSAKALDQIDLNILNELQRNGKISNIELSKRVGLSPTPCLERVKRL
EKQNVIMGYRALLNPALLEAPLLVLVEITLVRGKPDVFDEFNYAIKQLDE
IQECHLVSGDFDYLLKIRVADMAEYRKLLGTILLRLPGVNDTRTYVVMEE
VKQTNYLLLK
>HD0675 metJ, met repressor
MINWSGKYISPYAEHGKKSKQVKKITVSIPIKVLEILTNERTRRQINNLR
HATNSELLCEAFLHAFTGQPLPADEDLMKERYDEIPEKAKSRMRDLGIDP
DEWQY
>HD0975 mfd, transcription repair coupling factor
MTAYMSLELHFNLPLISPEAAKFQDHQTLGNLIGDADTLIIAQAATQFNG
CTLVVTTDIRTALRLEKSLRQFSQLPVAVFPDWETLPYDNFSPHQEIISA
RLSALFHLRQTKQQILLLPVNTLLQKLCPPSYLANNVLLIKKGDRFSIDS
LRLQLENAGYRAVEQVLEYGEYAVRGALFDLYPMGTSLPFRLDFFDDEID
SLRTFDVDTQRTISEIEQINLLPAHEFPTDQQGIEHFRTKFREVFGEIRR
EPEHIYQQVSKGILNGGIEYWQPLFFQEMASLFDYLSPNTLFITYAGIND
KATQFYQETTQRYQSRQLDPMRPLLKPEQLWFKPDEINRALKGYPRLTLT
TEKIRETTAKMNASVQPLPALAINTHLKDPLQAFNQFRNTFSGKIIFSVE
TEGRRETLLELLAPLKIKPKQINTLAEADSQICLLISPLDQGFIFEDTSG
QHYAVICETNLLGKRVQKTVKKDKHNAVNPDTLIRNLAELKIGQAVVHLE
NGVGRYAGLTVLDTGGIKAEYLVLNYANDAKLYVPVAALHLISRYIGGAD
EQAPLHKLGSETWAKNRQKAVEKIHDIAAELLDIYAKRETQKGFKFAYDR
DAFMQFSHSFPFEETEDQKLAIHAVISDMCQAKAMDRLICGDVGFGKTEV
AMRATYLAVENHKQVAVLVPTTLLAQQHYEDFKDRFANYPINIEVLSRFK
TAKEQKDILARVATHKVDILIGTHKLLQDNVKFHDLGLLVIDEEHRFSVR
QKEKIKQLRANIDILTLTATPIPRTLNMALNGMRDLSIIASPPSRRLTIK
TFVCQQDDTIIKEAILREILRGGQVYYLHNDVATIENCATKLAELVPEAR
IVIGHGQMRERDLERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIEQ
ANKFGLAQLHQLRGRVGRSHHQAYAYLLTPHPKTLTKDAQQRLEAISSID
NLGAGFVLATHDLEIRGAGELLGAEQSGQIESIGFSLYMDLLKNAVQALQ
NGLEPTLDEITQSQVEIELRIPALLPDDYVPDVNMRLSFYKRIASTENKE
GLKDLKIELIDRFGLLPEAAQNLFRITQLRHMAKQLDLKKIEMGVNGGYL
EFKPNAQLNPIKFLQLIQSDKNMFKFDGPLKFKIIKPFEKGEQRLQFITD
LITELTNQAD
>HD1479 mlc, probable transcriptional repressor of carbohydrate metabolism; PTS operon
MPYFFNWLYNKDYTMISNNKTQHLGTIYRLIEQFELISRTDLAKLSGFAP
ASITNLTKSLIDHKFILERTVQNSSSRGRPAVGLAVSNFYWQLLCLTISP
NEINVFLCELNGKTIQTKHYPLTVELYDQLAEYLIDCLKDLFWHSPMKEE
RILAISITVLGQISADHTQVIQIGQVAVNCQLVNYLKKQFSCPILLNEHF
QLWLLTESILGSLISNNNVIFLQLDERVNLSVLLRGTLLHQQSKMNVDKM
LMPRFSELSDLAAPQNADDIQRYQLNNQITFPAIYRLIDQYLPNTLQHYQ
QKMDLLCEKIHHHPAALAILDHITDNLAYLLMNLINIFSSEKIMLSSPLL
SVKKALFEQLKLKLNKHLRIEDLNIDLVTSQYEWNSPLIACSAIKQGIYQ
GNLIKNIITP
>HD0305 narP, nitrate/nitrite response regulator protein
MTESYKILLIDDHPLMRQGIRQILELEDNFTIVGEASNGNDGIALALDTD
PDLIILDLNMKGISGLDTLRALRKQGVDSRIIVLTASDEQSDIFASMDAG
VDGYLLKDSDTSELRENIRKAVLGETVLSDSIRAHLLNRRPENDPLSVLT
DRERDVLQWIATGMSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAAT
ILYLEQQRLKQVK
>HD0090 ner, possible DNA-binding protein
MRTLNETKKTADWHREDIKAALAKKGWSLRQLSLKHGYSNGSTLKNALDR
PWLKGERIIAEAIGVSAETIWASRYEKRNLKKYADR
>HD1462 nusA, transcription termination-antitermination factor nusA, N utilization substance protein A
MSKEILLAAEAVSNEKLLPKEAIFEALETALAISTKKKKGIDIDIRVVIN
RKTGEFQTFRRWLIVEQVHNMTREISLAAAQYEDPNVQLGDFVEDEIESI
PFDRITMQTARQVISTKIREAERNKVIEQFRTQLNCIVTATVKKVNREQI
ILDLGNQAEAVIIREDMLPRENFRPGDRIRGVLYAIKPESKGPQLFVTRA
KPVMLEVLFKLEVPEIGEEVIEIKGASRDAGSRSKIAVKSNDKRIDPVGA
CVGMRGARVQAISNELGGERVDIVLWDDNPAQFVINAMSPAEVSHIVVDE
DKHAMDIAVETKNLAQAIGRNGQNVRLATQLTGWSLNVMTTEDLNEKHQA
EDNKIIDLFVTSLQIDEEFAHLLVDEGFSSLEEIAFIAVNELVDIDGIDD
ENLAEELQTRAKAAITEKALAEEEALKRADIEDRLLNLDGLERHIAFKLA
EKGIVTLEELAEQGIDDLADIQELSAEKAGELIMNARQICWFS
>HD0435 nusB, transcription termination factor
MKVSPRRRARECAVQALYSWYISQNSIEEVELAFVTDQDMKGVDLPYFRK
LLRGTALYVEAIDHDIRPYLDRMENDVDPIERTILRLATYELKYELDVPY
KVVINEGIEVAKVFGSDDSHKYINGILDKLAPALGRK
>HD1885 nusG, transcription antitermination protein
MSEVEKTETSKMRWYVLQAFSGFENRVAVTLREYIKLHQMEDQFGEVLVP
TEEVVENVGGKRRRTERKFFPGYVLVQMEMNDDTWHLVKSVPRVMGFIGG
TADKPAAISKREADRILNRVQETADKPRHRNEYHPGENVRVTEGPFADFT
GTVEEVDYEKGRLKVSVSIFGRATPVELEFGQVEKQL
>HD0699 oxyR, hydrogen peroxide-inducible genes activator
MNIRDLEYLIALADYKHFRRAADACNVSQPTLSGQIRKLENELGTILLER
TSRKVLFTQAGLTLVEQAKAVLREVKILKEMASNQGKEMSGPLHVGIIPT
LGPYLLPFALPALKSAFPELDLYIYELQTSQLIDQLEAGQLDCGILALVK
ESEPFIEIPIFNEEMLLAVPKQHEWAKQSSLTINALKDKELLFLDDGHCL
RTQTLDYCLSVGAKESTHFKATNLETLRNMVATNAGMSLVPELAAKQNAN
IHYLTFENPQPYRAIGLIYRPGSPLRIRYERLAKEVAYIMTKEGKNE
>HD1641 purR, purine nucleotide synthesis repressor
MATIKDVAKLAGVSTTTVSHVINKTRFVAEETSKTVWNAVQKLNYSPSAV
ARSLKINTTKSIGMIITTSEAPYFAEIVLAVEEHCYQQGYSLFLCNTQNE
PEKIQNHLDMLIKKRVDGILVMCSEYTRNSLELFNATNIPMVVMDWGKAH
EKNDRIIDNSFNGAYLATRHLIDNGHKDIGVISGYLTKTICSERLEGFIK
AMKEANLPIREEWILEGDFEPESGFEQMNNLLRLDKLPTAIFCFSDTIAL
GVLSALSEKGIAVPQDISIIGYDNTHSSRFFSPPLTTIHQSKSRLGVKAL
NLLLERIKLGHKEYQPHTIEFHPELVLRHSVRNLNKSEE
>HD1306 rcpB, rough colony protein B
MRKLLTVCSFCAVALPTFAQTELLANTRPAQPLKSQIASAKSFNIKRFVL
ANNSDVAVENLLTEVAAKAKSAPDSQTLHIISMDKKVKELAKSISKRLKA
MKIKHNISVEQRATINPLYPIYVEFHEIARKPIHCKVEIGEDYWSFDPAD
YCATKHNDYLQLK
>HD1921 recG, ATP-dependent DNA helicase RecG
MEKQLLNDIPLISLAGVGTAIAEKLHRLAIYNVQDLLFHLPIRYEDRTRI
TAIADVRPAHFVTIEGQVQLTEVEYSRRAILAVVLSDGTSKIMLKFFNFN
AGMKNGFAVGVRVKAFGEIKRGRFMAEIHHPEYQIIRHNQPLTLAESLTP
IYTTTEGLKQNSLRKLTEQALALLNKIQIAELLPAQYNPYQYNLTEALQL
LHCPPPNISAETLAQGEHPAQKRLIFEELLAHNLAMQQLRLGVKQLYATP
LHYQTELKTRFLANLAFQPTPAQTRVTAEIENDLAQAVPMMRLVQGDVGS
GKTLVAALAALLAIDNGKQVALMAPTEILAEQHATNFTQWLKPFDINVGW
LAGKIKGKARTAQLTAIEQGEVQMIIGTHALFQESVAFHDLALVIIDEQH
RFGVHQRLTLRAKGAKTINGQEIYPHQLIMTATPIPRTLAMTVYADLDTS
LIDQLPPGRTPIKTIVIAEERRAEVVQRVYHACKNEGRQAYWVCTLIDES
EVLEAQAAAAIAEDLQGALPDLRIGLVHGRMKPQEKQTIMAAFKAATLDL
LVATTVIEVGVDVPNASLMIIENSERLGLAQLHQLRGRVGRGATASHCVL
MYKPPLGKISSKRLQVMRDSQDGFYIAEKDLEIRGTGEILGTKQTGMAEF
KVANLMRDRKLIPLVQHSAKQIISEHPALAEALIARWLNQKADYCNA
>HD1185 relA, GTP pyrophosphokinase
MVAIRRSHELDPSTFELASWSASLQMSPITFEELQIAWRYIHEKLDTDSY
HLMWDGVEMVELLHGLNMDDDSLVAALLFPLVKNNIVDLAQVKEEFSNQV
KNLVKGVIEMDNIRQLNASSRSDFQIDNIRRMLLAMVDDFRCVVIKLAER
IAYLREIHRYTEEDLVLAAKECSHIYAPLANRLGIGQLKWELEDYCFRVL
HPQSYRRIATQLGERRLERENYIANFVSQLTASLTEEVDTLEVYGRPKHI
YSIWKKMQKKNVQFEQLFDIRAVRVIVPNVQDCYSVLGIIHTQYKHLPEH
FDDYIAHPKPNGYQSIHTVVLGEGEQPIEVQIRTRKMHDEAELGIAAHWK
YKEGPTVSRSGYEEKIIWLRKLLAWQNDLAVSSDMMADMRSQIFDDRVYV
FTPRGEVIDLPKNSTPLDFAYAVHSEIGHRCIGAKIADRIVPFTYVLQMG
DQVEIITQKTPNPSRDWLSPQAGFVNTSKARAKIIAWFKKLDREKNIPLG
KEALEAEISRLGLSHKQIEQYALPRYNLKQFDDLYAAIGGGDIRLNQLSH
YLQSKLIKPTAEQEDEAVLKHVNKNAYNAQQQKGKNGQIIIDGVGNLMHN
LARCCQPIPGDDIVGYITQGRGISIHCANCEQLFELRSANPERIVSAQWD
SHFKAGFSLRIRIIANERNGLLRDVSAVMANEKVNVLTVASRQDIKRGLT
VMDIELEMSNVEMLAKILTRISQLESVIEAKRLAN
>HD0895 rho, transcription termination factor Rho
MHLTQLKNTPVSELVQIGEKQMGLENLARLRKQDIIFAILKQHAKSGEDI
FGQGILEILPDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLQTGDKIEG
KIRPPKEGERYFALLKVDLVNDDKPEVSRSKILFENLTPLHANSRLRMEC
GNGSTEDLTARILDLAAPIGKGQRGLIVAPPKAGKTVLLQNIAQSITHNY
PECELIVLLIDERPEEVTEMQRTVRGEVIASTFDEPATRHVQVAEMVIEK
AKRSVEHKKDVVILLDSITRLARAYNTVTPVSGKILSGGVDANALHRPKR
FFGAARNVEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMELHLSRKI
AERRVFPAIDFNRSGTRKEGLLTSPDELQKMWILRKILNPMGEVEAMEFL
INKLMVAKTNDEFFEIMKRS
>HD1264 rnb, ribonuclease II
MFQNNPLLAQLKQQIEANKEYVEGKVKASDKNFGFLEADKKSYFIPPLEM
KKVMHGDNVKAVIKREGDKESVEIDSLIDPMLDRFIARVRFNKDGKLQLA
VDHPQIRLNIPATTHKKVTEQLANDDWVVAQLKSHPLRDDRFFFAQVTEF
ICKADDHFAPWWVTLARHQQPRESVKTEQSYTLQDQSPREDLSHLYFTTI
DSPSTQDMDDALFIEPITENAIQQGWRLVVAIADPTAYIAEDSNIEHAAR
QRCFTNYLPGFNIPMLPRELSDDLCSLVPNKKRPALVVYIETDLNGNLIK
DASFHTAWVESKAKLAYDNVSDYLEGVEQAWQPDCAELKQQIYWLHQFTQ
ARIQWRSKNALLFKEQMDYNFELNADGSVKSIQIQYHRIANQIIEEAMII
ANICCAQFLAKHAKTGIFNSHAGFDPKNYEAVQTFLLNTLATDENRSELT
DLFSPTQLATLDGYCAMRRYIEDFPEKFLELRLRRYLTFAEFKAEVAPHF
GLGISHYATWTSPIRKYGDIVNHRLIKQVLLNQPIKHIESTILARLQEAR
RQNRLVERDIADWLYARYLLPIATQGVEFDCEITDISRGGIRAKVLENGA
QIFIPCSTLHENKDEIDFIPEEIALYTKGEKIYQIGQATRVKLTDVRLET
RSVLGNIIK
>HD1606 rnc, ribonuclease III
MYIERLQKKIGYQFANLDYLLQALTHRSAAAKNNERLEFLGDSILNYAIG
QALFERFPQANEGELSRMRATLVREQTLAILARQFDLGEYMKLGAGELKS
GGYRRESILSDCVEAIIAAIYLDAGMDKASERIYAWYQTLLDEMKPGDAQ
KDPKTRLQEFLQGRRLKLPEYEVLDIKGEAHNQIFKVSCKIETFTDIFIG
IGTSRRKAEQNAAEQILLKLNK
>HD1951 rpoA, RNA polymerase alpha subunit
MQGSVIEFLKPHLVNIEQISSTHAKVTLEPLERGFGHTLGNALRRILLSS
MPGCAVAEVEIDGVLHEYSSKEGVQEDILEVLLNLKGLAVKVSGKNDVTL
TLNKSGIGPVLAADITHDGDVEIINPNHVICHLTDKDASINMRIYVQRGR
GYVPASARVHSQDEDRPIGRLLVDARFSPVDRIAYNVEAARVEQRTDLDK
LIIDMETNGTIDPEEAIRRAATILAEQLDAFVDLRDVRQPEIKEEKPEFD
PILLRPVDDLELTVRSANCLKAETIHYIGDLVQRTEVELLKTPNLGKKSL
TEIKDVLASRGLSLGMRLENWPPASIAED
>HD1877 rpoB, RNA polymerase beta subunit
MAYSYSEKKRIRKSFGKRPQVLNVPYLLTIQLDSYEKFIHRDLDGQQGLE
AAFRSVFPIVSNNGSTELQYVSYELGEPVFDVRECQIRGTTYAAPLRVKL
RLVAFDREAAAGTVKDIKEQNVYMGEIPLMTDNGTFVINGTERVIVSQLH
RSPGVFFDSDKGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLYARIDR
RRKLPATIILRALGYTTEEILTMFFEKVLFEIQDNKLLMILVPERLRGET
AAFDIEANGKIYVERGRRITARHIRTLEKDGITQIEVPVEYIVGKVAAKD
YVDLSTGELVCPANTEISMDMLAKLSQAGYKELEVLFTNDLDHGPYISET
LRVDSTYDRLSALVEIYRMMRPGEPPTKEAAEALFDNMFFSADRYDLSAV
GRMKFNRSLNIPEGVGTGILTNDDITGVMKKLIEIRNGRGEVDDIDHLGN
RRIRSVGEMAENQFRIGLVRVERAVRERLSLGDLDGITPQDLINAKPISA
AVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDV
HPTHYGRLCPIETPEGPNIGLINSLSVYARTNNYGFLETPFHKVVNGQVT
EEIEYLSAIEEGNYVVAQANSNLDEHFRFTDTYVTCRGEHGESGLYKPED
IHYMDISTQQVVSVAAALIPFLEHDDANRALMGANMQRQAVPTLRADKPL
VGTGMEKPIALDSGVAIVAKRGGIIQRVDASRIVVKVNEDETIPGEAGID
IYNLIKYTRSNQNTCINQIPCVNLGEPVARGEILADGPSTDLGELALGQN
IRVAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELSCVARDTKLGAEE
ITADIPNVGESALSKLDESGIVYVGAEVKGGDILVGKVTPKGETQLTPEE
KLLRAIFGEKASDVKDSSLRVPNGTSGTVIDVQVFTRDSVEKDKRALEIE
EMQLREAKKDLTEELEILEAGLFTRVRNLLIESGVSEVNLNNVAREKWLE
QTLDDEAKQNQLEQLAEQHEELCKEFERKLEIKRNKIIQGDDLAPGVLKV
VKVYLAVRRQIQPGDKMAGRHGNKGVISKINPVEDMPYDENGEPVEIVLN
PLGVPSRMNIGQILETHLGLAARGIGDQINAMIKQQQEVTKLREYIQKAY
DLGHGSQVVDLSTFTDEEVMRLAQNLRKGLPLATPVFDGAHEAEIKGLLE
LGGLPTSGQITLFDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGS
YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNG
RTKMYKNIVDGTHQMEPGMPESFNVLLKEIRALGIDMELDED
>HD1876 rpoC, RNA polymerase beta' subunit
MKDLVKFLKAQSKSNDDFDVIKIGLASPDKIRSWSFGEVKKPETINYRTF
KPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRR
DRMGHIELACPVAHIWFLKSLPSRIGLILDMPLRDIERVLYFESYVVTEP
GMTDLEKNQLLTEEQYLEAEERWGDEFDAKMGAEGIQVLLRDMDLEHQCE
VMREELQETNSETKRKKITKRLKLLEAFQQSGNKPEWMVMTVLPVLPPDL
RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLGLVAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDY
SGRSVITVGPYLHLHQCGLPKKMALELFRPFIYSKLESRGIASTIKAAKK
MVEREEPIVWDILAEVIREHPILLNRAPTLHRLGIQAFEPLLIEGKAIQL
HPLVCAAFNADFDGDQMAVHVPLTLEAQLEARALMMSTNNVLSPASGDPI
IVPSQDVVLGLYYMTRDKVNGKGEGMYFLDPREAEKAYRTGQVELHARVK
VRITEYSKNEAGEFLAETNLVDTTIGRAILWMIAPKGMPFSVFNQTLGKK
AISKLINESYRRLGLKESVVLADQIMYTGFAYAARSGVSVGIDDMVIPAQ
KNDIITAAEAEVAEIQEQFNSGLVTAGERYNKVIDIWAAANERVAKAMME
NLSTEEMLNREGNPEKQASFNSIFMMADSGARGSAVQIRQLAGMRGLMAR
PDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRR
LVDVAQDLVITEDDCGTHEGIVMTPLIEGGDVKEALRDRVLGRVVAEDVL
KPGTEQILIPRNTLIDEKWCDVIDVESVDVIKVRSVVTCNTDFGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESS
IQVKNAGTIKLANAKFVTNKEGKIVLTSRNTELTVIDIFGRTKENYKVPY
GAVLSKNDGAEVGVGEIVANWDPHTMPVISEVSGRIQFSDIVDGLTVARQ
TDDLTGLSSIVVQDVGERATAGKDLRPALRLVDAKGNDIFIPGTDVAAQY
FLPGKAIVTLDDGAEIAVGEALARIPQESVGTKDITGGLPRVADLFEARK
PKEAAILAEISGIVSFGKETKGKRRLVITPAEGEAFEEMIPKWRQLNVFE
GEMVQRGDIISDGAETPHDILRLRGVHAVTDYIVNEVQEVYRLQGVKIND
KHIEVIVRQMLRKAVITNAYDSEFLEGEQVEVARVKIANRKRAEEGKPLV
EFERELLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN
VIVGRLIPAGTGFAYHQARAKKRVVAEQPFEMPVSKNAFATEADIEAEFE
FVADEATQNLAALLNATDEE
>HD0691 rpoD, RNA polymerase sigma factor
MEQQSQLELLIAQGREQGYLTISEVHDHLPEELVDAEQIEDIIQMINDMG
IKVLETAPDTDELMLAENIADEDVVEEATKVLSTVESELGRTTDPVRMYM
REMGTVELLTREGEIDIAKRIEEGINEVQCAVAEYPEALTELIGFYAQVE
EGTMRLSDLVTAFVDPNIQAEEDVVELDSDLDEEASDVVADVDDENEDEE
SDGSADNTDDNSIDPELAREKFYALREQHEKALQAIQKHGRSHKKSKQHI
QALSDIFREFRLVPKQFDLLVESMQRMMKQVRAEERQIQRYAVEYAQMKK
ADFLKLFQGNETSEEWIDKAINARKGAAPKLANYVEQIRINISNLQRMEQ
DTDLTVAQIREIGGRIASGELKARRAKKEMVEANLRLVISIAKKYTNRGL
QFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART
IRIPVHMIETINKLNRISRQCLQEMGREATPEELAERMGMPEDKIRKVLK
IAKEPISMETPIGDDDSHLGDFIQDENLELPLDSATAESLRLATNEVLEG
LTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRH
PSRSETLRSFLDD
>HD1172 rpoE, RNA polymerase sigma-E factor
MGDQITDQVLVERAQQGDKKAFNLLVVRYQNRVAGLLTRYVARDDIPDIV
QESFIKAYRSLASFRGESAFYTWLYRIAVNTAKNHLTALGRRPPKEDLLA
EDAETFDVGAQLRESDTPESMVLSEELKHVVFNTIESLPDELKTAITLRE
LEGLSYEEIAEVMQCPVGTVRSRIFRAREAIDAKINPLMQQS
>HD0086 rpoH, RNA polymerase sigma-32 factor
MKKFDEYEIEDAEILEADADDQDILEESELQHKIMHPALVQGSLPVQQGN
LDSYIRMANQYPILTAEQEKTLAERYYYDEDVDAAKQLILSHMRFVIHIA
RGYMGYGLPLADLIQEGNIGLMKAVKRFDPNVGVRLVSFAVHWVKAEIHE
YVLKNWRIVKVATTKAQRKLFFNLRKNKHRLAWFNEDEIQQVAQDLGVST
EEVREMESRMTGQDVGFDISANEDESEVYVPSMYLEDNSSNFADELEEEQ
HTGEATAKLAYALATLDERSQDIIKTRWLDENKATLHELAAKYSISAERV
RQLENAALKKIKDTITLEQ
>HD1923 rpoZ, RNA polymerase omega subunit
MARVTVQEAADKIGNRFDLILTAARRARQLQLHVREPLVPEENDKPTVIA
LREIEKGLINGSIMDQLENSDAVRQEVAEQEAISFLTDIQTNAYFYSFND
G
>HD1924 spoT, guanosine-3',5'-bis(diphosphate)3'-pyrophosphohy drolase
MHLFEPLHSIIQTYLPTDKIEWIQRAFVVARDAHEGQTRSSGEPYITHPV
AVATIIAEMKLDHEAIMAALLHDVIEDTPYTEEELAAEFGSNVAKIVQGV
SKLDKLKFRTRQEAQVENFRKMILAMTKDIRVVLIKLADRTHNMRTLGSL
RPDKRRRIAKETLEIYSPIAHRLGIEHLKNELENLCFQAMHPYRYRILRL
AIDMARGTRQDLLSTISHEIQMRLDEMGIKGRVYGREKHLYALYEKMRQR
DQHFHSILDIYAFRIVVNSIDNCYRVLGQMHALYKPRPYQIRDYIAVPKS
NGYQSLHTSMIGHKGMPIEVQIRTEDMDLMAELGVAAHWRYSEDQTQTTS
VQQKAQQWLRSIVELQQSAGNSDEFIENVKSDLFSDDIYVFTPKGRIVEL
PAKATAIDFAYAVHSDIGDCCIGATVDRKPYPISQPLESGQTVEIITKAG
KHPKRAWLNFVVTAKARSKIKAALKQFELIAEKPEETEKVEQLDIELEIK
DQIGVLANITNTIASMNSNIGMIESRPNDKGNYQVKIRISVTDKTHLYVV
IQKLIRVRGVIRVAKVSA
>HD0213 srmB, ATP-dependent RNA helicase protein
MTTENNIVTFAELDLAPALLKALAKKGYTRPTSVQAETIPYALAGRDLLG
SAPTGTGKTAAFLLPAIQHLLDYPRRKPGAPRILILTPTRELAMQVAEEA
QAFAAFTTLSIATITGGVAYQNHGEVFNSNQDIVVATPGRLMQYIKEENF
DCRAVEVLILDEADRMLQMGFGQDVEKIVAETRWRKYTWLFSATLEGELL
TDFSERILTDPLHINADPSRRERKKIQQWYYHADNVEHKTKLLARIITTI
EMEKVIVFVRRREDVRTLSDTLRKRAIRSTYLEGDMAQTQRNQAITRLKE
GGVNVLVATDVAARGIDIDEVDYVINFDLPYSEDTYLHRIGRTARAGKKG
SAISLVEAHDYKLLGKIKRYTQEALKPRIVEGLEPRTKAPKDGELNSTSK
KAKARLKKRKEAKKIEAKTKLKVRHKESKNIGKRRKVATTNA
>HD0735 ttk, TetR family transcription regulator
MTEPLIKMPKKSVKERQQQVLEVLIGLLNSEQGMQRVTTERLAKAVGVSE
GALYRYFPSKSKMFEALIERIEQTLTSYINASKRKENSTALAVKAILYTV
IEFARKNPGVTRILTGHALMFENSELKLRVAKFFDGLELQFVNILQMRKL
REGKAFQDERALAGYLVTFCEGQFLRLVRSNFSSNPHQHFEKQWSLIKPL
FE
>HD1229 tyrR, transcriptional regulatory protein
MTQLRIECTDKLITLPQILHVLAENKQTVQHINLTDEVIQLRFLRLTENE
QAELLKQLQVIPSITQASFIKQTTVLFDQIIAQSHKMQVVFEQQKKFAQL
DAPLLIQGETGTGKDLFAKACHDLSNRRDYKFIAINCAGLPADDAESEMF
GHSGQGKQNIGFFEYANGGTVLLDSVAELSLSMQAKLLRFLNDGSFRRVG
EDKEISVDVRVICTSQKPLVALVSEGKMREDLYHRLNVLTLELPPLRERQ
GDLPLLADYFIKQISQQLAIDKPNYDNTFLQALQLYHWPGNLRELYNALF
RACSLSSGDNLAIQDLKLPSTLLKFDEIELDESKSLEELVNRFEASLLRR
FYVEYPSTRKLAQRLGISHTAVANKLRAYGIGK
>HD0695 vacB, ribonuclease r, virulence associated protein VacB homolog
MITDPNYQQEREKYANPIPSREFILQTIRHFDAPMSREALLATFNINDEE
RSEAIRRRLHAMENDGQLIFTKRKSYALPEKMDLIKGTVIGHRNGYGFLQ
VDGSEKDWFIPNNQMNRIMHGDFVLAQPNGTDRHGRREVRIVRVLEAGKK
QIVGRFFIESGIAFVMPDDSRITRDILIPAEHCMGARMGQIVVVELQERK
ASLSRPIGFITEILGDNLAPGMEIEIALRNHDIPHHWSDDVKKQIRQYND
QVPEVAKQDRIDLRHLPLVTIDGESACDFDDAVFARKEGDQWRLWVAIAD
VSYYVRPKTALDLEAAKRGNSVYFPKRVIPMLPEVLSNGLCSLNPQVDRL
CLVAEMTVCQSGELTRYQFYEAVMNSHARLTYNKVWKILNGDQTLHSRYA
PLVPHLVELNNMFKSLTKARQKRGAIEFETIENQFIFNPQGRIERIEPLI
RNDAHKIIEECMILANVAAARFVTQANEPALFRIHDKPSEEKLTSFKSFI
RERGLVWNVGRDPTPKDYAELLAMLSERPDRELIQTMLLRSLKQAVYAAD
NIGHFGLALSEYAHFTSPIRRYPDLLLHRSIKYLIEKEKGNTRNYTDGGG
YHYKLDDIDQFGDQCSITERRADEASSEVADWLKCEFMQDHLGKEFKGVI
SSVTGFGLFVKLNDLLIDGLVHISTLDNDYYHYDADRQRLVGESGLIYRL
GDPVNVKVINVNLADKKIDFALLNNLRKGIAVGKTAKQKAKKATHQPRFK
ELNTLTTTNNSEKRTKKRKASTKYSKKASRIKKND
>HD1841 wecD, putative TDP-D-fucosamine acetyltransferase
MLNSTSSTIISPDQWLSDFFGRPIVQVKVATADHQQIQKLAQQGLQLASS
EIVFALPLTNKVCKPTTCQQATTCDLNELTWLFGQAFPRSRFGPPWFSAS
ENCRFYQTWIRRAVQGEFDDLCLIQRSEDGQLQGGISLRRQQQEGQPPYA
QVGLLAVDPLFQRQGVGRTLLQASINWALTQQLEHLVISTQLSNLNAINC
YLTFNARVVSTHYWFYPRLHNDSF