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# Prochlorococcus marinus subsp. marinus str. CCMP1375, CCMP1375; SS120

>Pro1276 Predicted protein
MSLHQNARSGKPNSAWWQANVFKIAPLILLYSLLVSCDLRREDKEVTKEI
PPDKIIPIASLSFEIAPLFKPNFLEEISSSCKRKKEIGLTNYGRWENYYE
CSKLILSEFPSINSFRIHRNKSNQINAFSFISLNDEVMSFFDSKYSLGMN
FEEHFCSKYGDGIPRRFFVTKKELCNELAYGNL
>Pro0035 Predicted protein
MGSSCSFRITRTAEDLAQTVTAISQRLIKLEQRIEALELTSIQPKEVQSD
EELVMLDGVDQLLQECKGLLNNSSNDFDSDEVWVEEDKGNQEMAA
>Pro0094 Predicted transcriptional regulator
MKHQKYCLLIGNSRWHWAIQKQEQWSFSHTDPNPKQLKKLKNHLWKWAAV
GPIPSSINLETKRCIGIKDVPLLKLTDWIGIDRALGGWAAFKQAKSQNLH
SKGILLADAGTVLSLTRITANGEFAGGQLIAGLKLQRSSMAKGAQKLKPV
CTDNLPANQFPISTEAAMLKGSFQALLGSIIEAQKDSNLPLWICGGDSEI
LFNHLINRQIDVYHRPNLVLEGMIDIDLPSIPKPNPEQSDQPYWQP
>Pro1648 Predicted nucleic-acid-binding protein implicated in transcription termination
MKRNSVLRRCVACKKLVDRKQLWRVVRDYQDGIVLDQGMGRSAYLCPSEN
CLKEAWQRKRLQKALRCQVNVSVLEVLQNRLNHCNDSITKAI
>Pro0926 Predicted HTH domain transcriptional regulator
MPARIEAVLYLKGKPISVAEISEVLKEEKAIIEEALLALMAGYSQRDTAL
EIKENEAKYSLQLRKGLGELVQNLLPVDISGATLRTLATIALKKRILQSE
LVDLRGSGAYEHIKELVEMNFVERKRQREGRSFWLTLSEKFHRTFTVIPD
INDTDDKKAA
>Pro0194 Two-component response regulator
MDDQQLSTLEDQPKARILLVDDEPGIRTAVQAYLNDEGFDVLTAIDGEDG
LQKAKQFMPDVVITDVMMPQCDGYELLRQLREDERLGGTPVIFLTAKGMT
IDRTQGYQAGVDDYIPKPFDPDELVARVKNVVKRQERLLAEAARFADTDV
GQMAKQITEIKSMLTQNDSNSSRKDLVIPSFTPREASVLQLVAEGLMNKE
IARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYALENHLVT
>Pro0352 Predicted Zn-ribbon and ATP-cone domain-containing transcriptional regulator
MQCPSCQNTDSRVLESRSADAGKCVRRRRECLNCDFRFTTYERVETIPVT
VIKRSNAKEIFCRSKLLNGLTRACEKTSINNQKIEAIVDEIETHLQQSNL
KEISSVDLGEMILLHLKSVNEVAYIRFASVYRQFNGIEDFIDTLESFKPS
NKFAAIS
>Pro0464 Predicted RNA-binding protein
MNDLPLQMMDITSLQAVLADLRKEIVPSRLEKVQQSDNHTLQIGFRTLRD
LIWIEICWHADSARIVQIDPPAKISGESTLCKQIKFGTKGMALIELKQNG
FERIVEFGLAFRPNENFEKFLVLEIMGRHSNFLLLNESRQVITLGKQVRK
NQSRLRPIGTGDKYVPPPPLNGQPPKRSESFEEWKSNLSMLPKTLKEALK
DCYQGISPSLSLQLASEEKESAEEFLNLQVQALSQTDWKRLHYRWSKWLK
DLERENFCISFSGPSAYRVWKPNLSNDDNYKKISLSLGNYYKNNLEAKKL
NHTYKRLSEDIIRIKANEEKSLKTQEELFSKISEIKSLQIQAENILCLNN
PTKKQVAQAQKLYNKVKKLKRSKAILMERISYHKERLSFANEIELFLEYI
MNNTKENKASKIEDILILKEDIENYLLLKQQKGTKKIKQKKDITNILQLQ
SPSGLIIQIGRNHHQNELISIRKANKGDIWFHAQESPGSHVVIKASNGKI
DQDDLKVGADLAALFSKAKQNKKVSILMVPTNKLKKLKGTAPGMVSPRDS
KVLWGYPSNGQKYLEQSTKNA
>Pro1542 Two-component response regulator, CheY-like receiver and wHTH DNA-binding domains
MLLDVLVVEDDFILLDFLYQELSNQINSLGGIVRKASSLDDARKLISQKS
PDWILVDLLLPDGSGIELAEEFILNKPNSKVLILTAQADQYVLPATLLKN
VHALINKADGLAPLREAVWEILKEVDSTFPELNSLTPRQMEFLHLIGKGL
DTAQIAKKLDVSFSTAQTHRRQITRKLKIKGSALVTFAKTLPKSL
>Pro1799 cyanobacteria-specific GntR-like HTH domain containing transcriptional regulator
MKFHIQQESEIPASTQLYNQICFAIAARHYPPGHRLPSTRQLAMQTGLHR
NTISKVYRQLETDGVVEAIAGSGIYVRDQQKKREAKNSNTFRKKEITDLD
QEVRKSVDGLLNAGCTLQQTRELFIQEIDWRLRCGARVLVSTPREDLGAS
MLIAEELEPSLDVPIEVVPMEELETVLESSNIGTVVTSRYFLQPLEEVAK
RHGVRAIAVDLSDFGKELAMLKELRSGSCVGIVSISPGILRAAEVILHSM
RGNELLLMTANPDVGSRLLALLRAANYVLCDSPSLPLVEHTLRQNRSQLI
RMPQVHCAERYLSESTLERLQKEIGLLK
>Pro1601 Uncharacterized membrane protein
MIPSSSFPTLLLIPSGIGCQVGGYAGDAIPFARLLAASSGCLITHPNVMN
GASLYWHDESIQYVEGFSVDQFACGDIVLRPVRNQRIGVLLDAGLGSELR
KRHLDVIDACRATLGLDIGPVETTDSPLKITLEISSSGASWGKLSTPTPL
LRAGERLKKEGATAIAVVTRFPDDLDSEELGAYRQGHGVDVIAGAEAVIS
HLLVRHLCLPCAHAPALSPLPIAEDLDPRAAGEELGYTFLPCVLVGLSHA
PDLIPRDTLKTLSNLTKPNFISIEDLGAVVAPIGALGGEAVLGCIEKGIP
LIAVSNPGVLKVDLDSLGLKADSLLTSHLRVYEVDNYLEAAGLVLALREG
IAISSLKRPIQKVVET
>Pro1780 Two-component response regulator
MYEEGSSMLEKSNDGPGSKPASLPSATILVVDDEPAVLKVLVTRLELAGY
KVVSASDGEEALDVFHREIPDLVVLDVMLPKLDGFAVCRRLRAESIVPII
FLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRRMGPGASVA
EPREIPAGQGVMKLGELVVDTNRRQVSRGGERIGLTYTEFSLLELLFRDP
GKVVPRAEILEQLWGYPPRRAADLRVVDVYVARLRGKLEPDPRNPELILT
VRGIGYSSQRLNEFPPVSS
>Pro0782 Predicted protein
MFEEDASQHLGVSKKTLEYWREVGYLKPGTHWRSAPSKDSMPWKPKVIYH
LSWCKEIIEYWREKDVPMTDLVA
>Pro1578 arsR, Transcriptional regulator
MSTGVANKKAIDSLKALAEPIRLEIIESLSSGEKCVCDLMQETGLAQSKI
SFHLKVLKDAGVITDRQSGRWVYYQLDIRTLKSLQNWIKKLRKGCLNEAS
TCE
>Pro0177 csgD, Transcriptional regulator, contains HTH motif
MFSGDFSNSVQMSLSAREMEIIELVASGLTNQEIAQKLTISKRTVDNHVS
NMFTKTGSKNRVALLNWAMDHGKICRDGFNCCSLPDEDDPEPV
>Pro1718 dinG, Rad3-related DNA helicase
MIEAYAHNYLKNLLKEDDLIWPHNLTLSRLVSRSLRRRDKSIFQLEISNH
EDYWLGVLIPLCLQSFGAVLVVTSSQKNRLFQVEIPRLKEEGLTLPIWEG
ADPPLDGKVWVLDFVGFVNAFRKNHLSSRQLIIPEGEFFSRRIREAMAIH
VSSSHWDCLRRAYPSTSSALINLYERLSRRLFSQAIRPDALVRIDLSDVL
RLKDLLGVLPQPPAPWADVLDATNQRWASWAELDYKLLDWTWHLQPLEPL
HILHKLFIDNPFVLLSGAFQHELGCLDTLANVKVKLGSPIYQDPIKLFVP
YRQPLPNAECFTEHLLEQSRRLILGRQGLTVILLDDLRLLRQLTSELASE
FGTRVVYESTAPDSNGVICCTSSWWLASHIHLPSPEQLILALLPISSLET
PLTASRVEAFKQQGRDWFRDLLLPECLGLLPRLVLPVRKNQGRIAVLDGR
LRSRAWGMKVFDALEPWTPLERLLPD
>Pro0047 hepA, Superfamily II DNA/RNA helicases, SNF2 family
MTLLHATWISTNWHPSNLGQSELFLWADQWRVVTPKQIIQTPSPHPFSLS
SDELKEWLNSKKLLPNESINTSACLTLPSKPIHKKNNQKSKNQKTGIESE
WKGLPLQAHEEIATQYECWPWKVDGISLTTVEATEWLTKLPLSKKDSDLS
EELLWWAHLERWSLNLIASGLWLPQVKLHKKEGNEYRASWIPLLNQENER
NRLEEFAKNIPLVAICAVPWIEAKGQIVNTEQVSNSNNNTLSLYRPRHNR
VEVMDLLEELIDAQLRKDFQPRTKNLDPLLKAWQEALGTKDGIINLSNEN
AKRLEKASKNWKRGLSSNVQPAKTCLELIAPIDDLDLWDLNFSLQSESDP
SIRLAADQIWEAGVEVTKVGGITIDNPSEILLEGLGRSLEIFPPIEKGLE
SPTPHTMKLSASEAFVLIRTAAAKLRDMGIGVILPNSLSKGFASRLGLAI
QAELPESSLGVMLGESLNWDWELMIGGINLSMKELEMLAKKNSPLLNHKG
TWIELRPNDLKNASKFFANTPELNLDKALRLSANKGNTFMKLPVHHFESG
PRLQSVLEQYHHQKAPEPLPAPNGFHGQLRPYQERGLGWLAFLYRFKQGA
CLADDMGLGKTIQLLCFIQHLKVQNELTKPVLLIAPTSVLTNWKREAATF
TPELCIHEHYGSKRHSSIPKLQNYLKKVDIMITSYGLLYRDGELLQEIDW
QGIVIDEAQAIKNSKSKQSIITRAISKNLISNPFRIALTGTPVENRISEL
WALMDFLNPKVLGEEDFFNQRYKLPIEHYGDISSLKDLKTQVSPFILRRL
KTDQSIISDLPQKIELNEWVGLSQEQELLYKQTVEKSLDELASLPIGQRQ
GKTLGLLTRLKQICNHPAIALKETQVEKNFLLRSSKLQRLEEILQEVKES
HDRALLFTQFAEWGHLLQAYLQTKWESEVPFLHGGTPKGKRQEMIDRFQD
DPRGPNIFLLSLKAGGVGLNLTRANHVFHIDRWWNPAVENQATDRAYRIG
QKKSVIVHKFITTGTIEEKINQMILEKTELAENIVGSGESWLGQLSLEKL
SELVALDSNPEF
>Pro1336 lexA, SOS-response transcriptional repressor LexA
MGGETLTPAQQELFDWLSDYIASHQHSPSIRQMMDGMGLRSPAPIQSRLR
HLQEKGWITWKEGQARTLQLLDNALSGVPVLGAVAAGGLVETFDDVQETL
DMSSVLKTRGLFALTVNGDSMVDSYIANGDVVLMEPVQEPSLIRNGTVVS
AMVPGSGTTLKHFYRKGSLVILEAANPAYEPIEIDAEMVKIQGKLLAVWR
KA
>Pro1000 mfd, Transcription-repair coupling factor
MALKSLITNVVESALTEEIVKRVVKKGKLSINGGSTSAKAITISSLALKS
NKPVLVIVPTLEEASRWNSIMQILGWNKVLLYPSSEVSPYESIEISKEIE
WAQLSVLSELLANDYRDPMAIICTERALQPHLPRPELMLENSVSIIKGNE
LNLDNLSRNLIKIGYEKTTTTEQEGTWSRRGDIIDIFAVNNELPIRIELF
GDNIDKIREFDPINQRSLDEINNIRISPVSINKITFNNLSNNELKRKDNN
IKHEIEGTIEELLEITQAKDSTLMNYIHKDSLICIDEKKQCVSHNENWIN
HLRITFNELMRDNTLKDNNSINILNYNDKNQINSLLEDFKIIEMSNDSIS
INQDESFHLNSSKIVTYPNQFSKISELIREFQKKKYSIWLLSAQPSRASA
LLEEHECITKFVQNNLDISHINSLIEFKTPVSLKLHGNIDIEGVDLSQWK
VLLLTDKELFGQQIVSSTGFIRKRRSSSSRSVNPNKLKSGDYVVHRNHGV
GKFLKIEKFIVNNESRDYLLVQYSDGTLRVAADQLSSLGRYRNSSDKSPR
INKLGGNTWTKAKERAKKSISRVAIDLIKLYAERSNSQGFSFPKDGPWQR
ELEEAFPYEATPDQIKAVSEIKSDMEKSFPMDRLVCGDVGFGKTEVAIRA
LFKAITAGKQVAILAPTTVLAQQHWRTLTDRFAPYPIKVSLLNRFKSSSE
KKEIAKSLKNGTIDAIVGTHLLLSKNIEYKDLGLLVVDEEQRFGVNQKEK
IKSLKKNIDVLTLTATPIPRTLYMSLSGVREMSLITTPPPQRRAIKTHLV
SKENEIIRSAICQEIGRGGQIFYVVPRIEGIEEVATEIKQMVPNIKLIIA
HGQMNEGELENAMIAFNAGEADLMLCTTIIESGLDIPRVNTILIEDAHKF
GLSQLYQLRGRVGRSGVQAHAWLFFPQDKEVTNNASQRLKAIQEFSELGS
GYQLAMRDMEIRGVGNLIGIQQSGQMEIIGFDLYMEILHESIAEIQGQTI
PVVEETKVDLPITAFIPNTWIKSNEEKLTAYKQASECSTIDKLLELTAIW
IDRYGVLPAPVEALILIMKLKIKSKACGFSRIRLNKPNIVLETMMNESTF
SSLRDGLEGHLHGRVIYKAGQSFSEVTLRGLGILPLESHLETIIEWLENM
SNQLPYIDSSITNIIRDKLT
>Pro1072 nagC, ROK family sugar kinase
MKKIIYDFIGFDVGSSYIKMHCFNDQHLCHKRNLTVDSYLTPGAITVLLC
EAIDLLDDGAVNSIVVIIPGVIDKTGRFVESWIGNPLWVDIPLADWLEIR
LKIKVVLAGKNSFSFIKDLSVFSYHLKNSFSLFYQSSSS
>Pro1647 nusA, Transcription elongation factor NusA
MALVLLPGLNNLIEDISEEKKLPAQVVETALREALLKGYERYRKTLYLGI
NENPFEEEYFSNFDIGLDLDQEGYRVLASKIIVEEVDSEDHQIALAEVMQ
VAEDAQAGDTVVLDVTPEKEEFGRMAASTTKQVLSQKLRDQQRRMIQEEF
ADLEDPVLTARVIRFERQSVIMAVSSGLGRPEVEAELPRRDQLPNDNYRA
NATFKVFLKEVSEVPRRGPQLFVSRANAGLVVYLFENEVPEIQEGSVRIV
AVAREANPPSRSVGPRTKVAVDSIEREVDPVGACIGARGSRIQQVVNELR
GEKIDVIRWSTDPIQYICNSLSPARVENVRLVDPDGQHAHVLVPPDQLSL
AIGREGQNVRLAARLTGWKIDIKNSQEYDQSAEDAIVAELITHREEEESL
QKEAEDRLAAEQAARAEEDARLRELYPLPEDEEEESENIENDTSSLEMNY
NDEESKDSYIPEESNSNEDRER
>Pro0009 nusB, Transcription termination factor, NusB
MESRSLAREVALLVLGQLSEDHIQNYTSLSLDDLIGLSLNTLLSYWREQL
DDCAAQIDLAQEELLNTELPESDKSYIPRTRQYLLNTLKKSEHIINVLSD
TFELSRLLTLSDQEQIRNEAMKRVDLVINKYQIINDALDNVMEGWRLKRL
PRIDQDILRLAYIDLYNLKTPIAVSCNEAVNLANRYSDQQGRKMINGILR
RLQSTPSHNTI
>Pro0231 nusG, Transcription antiterminator
MSEIDPTPQESSPVMDPPAPSQGEESTLIAKTSIARWYAIQVASSCEKKV
KATLEQRAVTLGVSNRILEIEIPQTPAVKLKKDGSRQSTEEKVFPGYVLV
RMILDEDTMMAVRSTPNVINFVGAEDRRITGRGRGHIKPRPLSRQEVNRI
FKRAAEKKTVVKLDLSEGDQILVTAGPFKDFQGEVIEVSGERNKLKALLS
IFGRETPVELEFSQISKQN
>Pro0156 ompR, Two-component response regulator
MTAASPSKEIILVADDEASIRRILETRLSMIGYQVVTACNGNEALQQFHN
CEPDLVVLDVMMPKLDGYGVIQELRKESDVPIVMLTALGDVADRITGLEL
GADDYVVKPFSPKELEARIRCVLRRVEKEQIAGLPNSGVIQVAAFRIDTN
RRKVYRGDERIRLTGMEFSLLELLVSRSGEPFSRGEILKEVWGYTPERHV
DTRVVDVHISRLRSKLEDDPANPELILTARGTGYLFQRIVDPLSLDH
>Pro1083 ompR, Two-component response regulator
MTLTPDLLSDEPSAQPSLGGGSHHPTSQSPSRILVVEPHPTLRTVLVQRL
RQDGHLAAAVGSVVEAIDLCRDQAPDLLVSAELLEQSSALNLGQQLGCPV
MVLTARSGVETLVGLLDDGADDVLRKPFGLEELAARCRTLLKRGRIGLQE
RVTVGPLEVHLLLRQVTLREKPVELSPREFALLCALLMPPGMVRSRHELL
RMAWPPFSGGPRSVDTQVLTLRRKLEQAGLGDGGGITTVRQQGYRFSLDS
LPS
>Pro0150 ompR, Two-component response regulator
MKPCILLIEDDKDMRELVGGHLEHTGFDVQVAEDGIKGQALALQYKPDLI
LLDLMLPNVDGLTLCQRLRRDERTSSIPILMITALGATKDKVTGFNSGAD
DYLTKPFDLEELHVRIKALLRRTNRAPLGSTGHPEILSYGPMTLVPERFE
AIWFECPVRLTHLEFELLHCLLQRHGQTVAPSLILKEVWGYEPDDDIETI
RVHVRHLRTKLEPEPRKPRFIKTVYGAGYCLELPKGEQIKQFRELVLNKV
SQKET
>Pro0771 psb28, Photosystem II reaction centre W protein
MAELKKNATIRFLEGIDETSIPEIRLTRSRDGRTGQAFFTFEEPQALSAV
KDGSIQGMSMFDEEGELKTREVKARFVNGTPSALEATYVWKSESDFQRFM
RFAKRYASSNGMGYSEK
>Pro0170 rbcR, RuBisCO operon transcriptional regulator
MAELPFTLDQLRILKAIVHEGSFKKAAESLYVTQPAVSLQIQNLEKQLEI
AIFDRGGRKAQLTEAGKLLLKYCERILTQCDEACGAIEDLHNLKGGSLII
GASQTTGTYLMPRMIGLFRQKFPEVSVQLQVHSTRRTGWSVANGQIDLAI
IGGQLPNELNELLHIIPYATDQLALILSQKHPLARMKELTKEDLYRLGFV
TLDSQSTTRKVVDQLLKDSGLDVQRLRIEMELNSLEAIKNAVQSGLGAAF
LPVVSIERELLAGTVHKPLVADLEVKRELKLISNPNRYTSRAAEAFTKEI
LPIFASDDSPIRRKLKE
>Pro0828 recG, RecG-like helicase
MVEQYKDRKKQNSLELRDQQINALNNWVRLLQKALTVEAENGFKNIHGRA
EHFNSFLSREIKEFKSPLLSNEIDKKLTLFAKSFDDYPTSDLPIKRRLII
DARQLLYRLSKEYQIKDIPSPPKLRMSDSQSTANDIRQHLRIDSPLGEVK
GVGTKMCECFAALNLFVIKDLLFHYPRDYVDYSSLKRIFSLVPGETTTII
ATIRRSNSYTSPRNQNLSILELHLEDMTGRIKISKFFIGRRFSKRSFLKK
QESLYPKGTIVAVSGLVKGNSYGKSFNDPLIEVLEHKQALLKSQTIGRIL
PIYQLTDGLKADRLRQIVHSVIPLALDLEDPLPVNTRESLSLLDKGEAIK
QIHRPRNQEYLKKAKRRLVFDEFLFLQLGLLKRRLELGKCKAPSLFINKE
REGFTEQFLKLLPFALTNSQQQVLTQIESDIAMSKPMSRLVQGDVGCGKT
VVAIAALLRAVESGWQGAFMAPTEVLAQQHYLTLCKWLPQLHVTVELLTG
STAAKERKRIFADLSNGNLKIIVGTHALIEESVSFRRLGLVVVDEQHRFG
VNQRNLLLNKGLHPHLLTMTATPIPRTLALSIHGDLDVSQINELPPGRTP
IETQLMPSSERYQAYEAIKEQLDIGSQAYVVLPLVDESEKLELRSAIDVY
HELSSEILSEYKVGLLHGRMHSSEKKGIINKFVNKEIEVLVSTTVVEVGV
DVPEATMMVIDHADRFGLAQLHQLRGRVGRGTKDSKCILIDTAKSLASKN
RLEVLVNSHDGFEISEIDLRLRGPGQVLGTRQSGLPDFALANLVNDETIL
ESAREEAEKILKSDPDLIQNKLLKIMLDDYWNRLVTKTQLN
>Pro1762 rnc, dsRNA-specific ribonuclease/ribonuclease III
MTKKDIVSIVSKERAEEIYGLLTQSNLHSSDIEVIKKNEDYCLKILNEAL
THTSFNLSINHERLEFQGDAVLRLAASEYIQSHFPKLSVGDRSALRAQLV
SDRWLAKVGYKIGIKTTMLIANKALKDEAATDTICAEGTEALIGALYECL
RNIDAIQNWLEPYWNIESEEVLADPHKQNEKSALQEWSQGQGLNKPIYTI
KEISKQHGDLKRFYCTVHIQNDFRGEGWGSSRKKAQKEAAKEALKKLTN
>Pro1689 rpoA, DNA-directed RNA polymerase alpha subunit/40 kD subunit
MLQYQIDRIEHQVSDDRSQTGIFLIGPLERGQATTLGNSLRRVLMGGLEG
SAVTAVRISGVNHEYATVPGVREDVLDILLNCKELTVNSRSQELEIGRLV
VTGPAEVKARDLQFSSQVQIVDVDRPIATVHSGHSLELELHVERGVGYRP
VDRRNEATTAIDLLQIDAVFMPVKKVNFTIDETAVSEGGSTRERLRMEIV
TDGSITPDDAVAEAANQLIELFQPLATVTMVEEVPQEPEPTAEAQIPLEE
LNLSVRAYNCLKRAQVNSVSDLMGFSYEDLLEIKNFGSKSADEVIEALER
IGISIPQSRTSA
>Pro1640 rpoB, DNA-directed RNA polymerase beta subunit/140 kD subunit
MSRSAIQVAKTATYLPDLVEVQRASFKWFLEKGLIEELENFSPITDYTGK
LELHFIGSEYRLKRPRHDVEEAKRRDATFASQMYVTCRLVNKETGEIKEQ
EVFIGELPLMTERGTFIINGAERVIVNQIVRSPGVYFKDEQDKNGRRTYN
ASVIPNRGAWLKFETDKNDLLHVRVDKTRKINAHVLMRAMGLSDNDVIDK
LRHPEYYKKSIQAADDEGISSEDQALLELYKKLRPGEPPSVSGGQQLLQS
RFFDAKRYDLGRVGRYKINKKLRLTIPDSVRTLTHEDVLSTIDYLINLEL
DVGGATLDDIDHLGNRRVRSVGELLQNQVRVGLNRLERIIKERMTVGETD
SLTPAQLVNPKPLVAAIKEFFGSSQLSQFMDQTNPLAELTHKRRISALGP
GGLTRERAGFAVRDIHPSHYGRLCPIETPEGPNAGLINSLATHARVNSYG
FIETPFWKVEEGRVIKVGDPIYLSADLEDECRVAPGDVATDKDGMILADL
IPVRYRQDFEKVPPAQVDYVQLSPVQVISVATSLIPFVEHDDANRALMGS
NMQRQAVPLLRPERPLVGTGLETQVARDSGMVPISQVNGTVTYVDANSIV
VTDDEGGEHLHELQKYQRSNQDTCLNQRPIVRNGDKVIIGQVLADGSACE
GGEIALGQNVLIAYMPWEGYNYEDAILVSERLVKDDLYTSVHIEKYEIEA
RQTKLGPEEITREIPNIAEESLGNLDEMGIIRVGAFVESGDILVGKVTPK
GESDQPPEEKLLRAIFGEKARDVRDNSLRVPSTEKGRVVDVRIYTREQGD
ELPPGANMVVRVYVAQRRKIQVGDKMAGRHGNKGIISRILPREDMPYLPD
GTPVDIVLNPLGVPSRMNVGQVFELLMGWAAANLDCRVKVVPFDEMYGAE
KSYETVQLYLKEAAKQPGKEWVFNPDDPGKLLLRDGRTGEAFDQPVAVGY
SHFLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRLGEMEVWALE
AYGAAYTLQELLTVKSDDMQGRNEALNAIVKGKPIPRPGTPESFKVLMRE
LQSLGLDIGVYTDEGKEVDLMQDVNPRRSTPSRPTYESLGSDYQED
>Pro1639 rpoC, DNA-directed RNA polymerase beta' subunit/160 kD subunit
MTNSNLRTENHFDYVKITLASPERVMSWGQRTLPNGQVVGEVTKPETINY
RTLKPEMDGLFCEKIFGPSKDWECHCGKYKRVRHRGIVCERCGVEVTESR
VRRHRMGFINLAAPVSHVWYLKGIPSYVAILLDMPLRDVEQIVYFNCYVV
LDEGDHKDLKYKQLLTEDEWLEVEDEIYAEDSTIENEPVVGIGAEALKQL
LEDLDLQEVAEQLREEITGSKGQKRAKLIKRLRVIDNFIATNARPEWMVL
NAIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPE
IIVRNEKRMLQEAVDALVDNGRRGRTVVGANNRALKSLSDIIEGKQGRFR
QNLLGKRVDYSGRSVIVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIRQN
IVNNIKAAKKLIQRADDEVMQVLQEVIEGHPILLNRAPTLHRLGIQAFEP
KLVAGRAIQLHPLVCPAFNADFDGDQMAVHVPLAIEAQTEARMLMLASNN
ILSPATGEPIVTPSQDMVLGSYYLTALQPDAVKPDFGDQSKTFAGLEDVI
HAFEDKRINLHDWVWVRFNGEVEDDDELTSPLDTQILEDGTQIQQWTYRR
DRLDEEGALISRFLLTTVGRVVMNNTIIDAVASG
>Pro1638 rpoC, DNA-directed RNA polymerase beta' subunit/160 kD subunit
MTSTSPKSRKSSSKRKGSKKKAARSKNVIPPLSKTPPSFRNCVVDKKSLK
QLVAWAFKNHGTAVTAAMADNLKDLGFKYATQAAVSISVDDLKVPEAKQD
LLGQAEEQITATEECYRLGEITEVERHTKVIDTWTETNERLVDAVKKNFN
HNDPLNSVWMMANSGARGNMSQVRQLVGMRGLMANPQGEIIDLPIRTNFR
EGLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVAQDVIVREEDC
GTTRAILINAEDGRFGNRLVGRLVAEDIVDQEDAVIAKRDTAIDPELSKK
IEKANVNGVMIRSPLTCEATRSVCRKCYGWALAHNQLVDLGEAVGIIAAQ
SIGEPGTQLTMRTFHTGGVSTAETGVVRSNLAGKVEFGPKARVRGYRTPH
GVEAQQAEVDFLLHIKPTEKGKGQKVEISSGSLIFVEDGQEVDADVTLAQ
IAAGAIKKSVEKATKDVICDLAGQVRYEEAIQPKEVTDRQGNITLKAQRL
GRLWVLAGDVYNLPPNAKPVIASNANVQAGKVLAEASQSSEFGGEVRLRD
SIGDSREVQIVTTSMTLKDYNLLEESNHSGEIWNLEANDGTRYRINSIPG
SKIGNNEVIAELSDDRFRTKTGGLVKYAPGLAIKKARSAKNGFEVSNGGS
LLWIPQETHEINKDISLLMIQDRQWIEAGTEVVKDIFSQTAGIVTVTQKN
DILREIIVRSGEFHLCTDSNILERFDNEGQIVNPGETIAKGIKPEAMVFV
QTIETTEGKGVLLRPVEEYTIPDKAQLPELSHVTQQQGPSLGLKATQRLG
YKDGELIKSVEGVELLKTQLILETFDTTPQMTVDVEVTEDQSTKTIQRLR
LVILESILVRRDTISDSSHGSTHTELQVKDQQIVKAGDIVATTQILCKEK
GIVQLPEMKEDEPIRRLIVERQEDTVTLTAASKPVVKIGQRVIDGDLLSN
EEPINCCGEIEAIKENKVTLRLGRPYMVSPDSVLHVKNGDLVQRGDGLAL
LVFERQKTGDIVQGLPRIEELLEARRPRDSAILCKRRGIVEINQGDDDDS
VVVKVIESDDLIEEYPILLGKNVMISDGQEVKAGELLTDGPVNPHELLEC
FFGDLRDRKPLMEAAQEAIAKLQHRLVTEVQNVYKSQGVAIDDKHIEVIV
RQMTSKVRIEDAGDTTLLPGELIEIRQVEDTNQAISITGGAPAEFTPVLL
GITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLI
PAGTGFSGFVEELRAEAGPHPDILAEDPAGYRRIQNLRPDYTVEMPSSPA
AANLTSVLDDPSDADLEATRNRHGIDPSTSNFAAFARPSGDDNFQEDQSP
DPAALEGLQEEGLLSDE
>Pro0495 rpoD, DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
MTSATSSKSVTKQKSNVTKSKKTKSLLKEGSQKNQHSKNLSEKKSTSKKK
AVTSITKKNNPTEPILSDENLEIAADQLLNATEMKNEESASLDIQNNDSL
IGDLTDAEAREKALASIKLGPKGVYTEDSIRVYLQEIGRIRLLRPDEEIE
LARKIADLLHLEELAIQFESEHGNYPTKKEWAALVNMPMARFRRRLMLAR
RAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEK
GYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQE
FGRKPSEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFI
ESDSENPELDVAKTLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLE
EIGQIFDVTRERIRQIEAKALRKLRHPNRNGVLKEYIK
>Pro1863 rpoD, DNA-directed RNA polymerase sigma subunit
MGIPLESVKGDSSSPSEKISLPKTSKEERQNKITTSSAGRGRPAGRVGTD
SIGFYLSSIGRVPLLTPAEEIELAHHVQKMKGLLDIPKENINTRQRHQIR
MGKRARDRMMAANLRLVVSVAKKYQNQGLELLDLVQEGAIGLERAVDKFD
PAMGYKFSTYAYWWIRQGMTRAIDNSARTIRLPIHISEKLSKMRRISREL
SHNLGRQPNRVELANELGMEPKDLEDLMAQSAPCASLDSHARGEEDRSTL
GELIPDPNYDEPMECMDRNMQKEHLSGWLSQLNEREQKIMRLRFGLDGEE
PLTLAEIGRQINVSRERVRQLEAKAILKLRGMTTHQQAA
>Pro0580 rpoD, DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
MSSLSDFLGEIGRHPLLTPEEELTMGRKVQAMVGLIERCHRAGDQGADCV
YTEAERRTIKIGEKAKNHMITANLRLVVNLAKKYQGKGLDLLDLIQEGTI
GLTRAVEKYDPKRGHRFSTYAYWWIRQGLNRALSTQSRTIRIPVNINEKL
TKLRAAKSELMQEYGTPPSAEQLAKKLSVSKQIIGDLLECEMRSITVSLQ
GVIQSKTDPSELGDVLPSDEIPPMELAELAERNDSAWSLLNKANLTPKER
TIVSLRFGLDGTNEWRTLAEVAKHMNCSREYCRQVVQRALRKLRKTGIQS
GLVEASSQDE
>Pro1791 rpoD, DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
MSSYNPLIVPAKKSATEIDLVRSYLRDIGRVPLLTNEQEITLGRQVQELI
SLEKLERELESTNGKKPSKEDLAIDAGISVRELSKRLKRGVRAKERMVSA
NLRLVVSVAKKYTKRNMELLDLIQEGTIGLVRGVEKFDPARGYKFSTYAY
WWIRQGITRAIAEKSRIIRLPIHITELLNKLKKGQRELSQHLERTPTMQE
LSAYVEIPVEEVKDLMFRASQPVSLESKVGDGEDTSLLDLLAIDTDLPDQ
QIELDCMKGDLEVLLQKLPELQNRVLRMRFGINGEEPMTLTGIGRMLGIS
RDRVRNLLRDGLKGLRQYGHQVEAYVAC
>Pro1363 rpoD, DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
MVSSAPKPAESQKRRSTDPISWYLATIGRVPLLTPAEEIELGNQVQVMMN
LTEDGMVNEKTKKFTSHERRSIRIGRRAKERMMKANLRLVVSVAKKYQGK
GLELLDLVQEGSLGLERAVEKFDPTRGYKFSTYAFWWIRQSMTRAIACQS
RTIRLPVHLSERLATIRKVSLDLAHKLGAMPNRLEIAEEMDIEVEELDSI
LRQALTTSSLDAPVNGDDGRSFLGDLIADSSVEEPLDKVEQSIHQEQLGR
WLTHLSEQEQHVLKLRFGLEGNDRHTLAEIGRLLEVSRERVRQVELKSLR
KLRNLTRKLPSGI
>Pro0011 rsbU, Serine phosphatase RsbU
MSNNPLIPNRNESSQGFPEHELPFESVRELLDSLSTEQSRNQELISSIGF
SLRSFTNLDLFLELIPVIASRLVGVKGALLIPFHSDGRISREQLQILPQD
NFDVLIRKILDFQQAQSVAFANEGNHIKALDKLIHSHIGQSAIFSTSLVA
RGKQRGRLYVFDLNRSFSFSNVHRRQLQFIADLAGVAIENHLLLQQTRSH
ESVDRQLSIGAEIQSQLLPDHCPVIEGIELAACCRPAFQVAGDYYDFMPT
RPELMGKSRERGRWALVVGDVMGKGVPAGLLMTMLRGMLRAEVLSGLPPD
RILHDLNQLALDDLTQSHRFVTLFYSDYEPKSRRLRFANAAHNPPLLWSA
KEKEITRLDALGLLIGLQQEAEYVCGEVTLDAGDVLLYYTDGVTEALGIS
GERFNEKRLISLLNESARKFTKAKDILDNLFKRLDSFVGDNHHLEDDASM
VVLKVDEAVKFPHVNNSTA
>Pro0217 spoT, GTP pyrophosphokinase
MFKATSASNETQASLAWNADMPDEPQLRPEIVSSSDDYAIPLPVWLKNCI
DQAPNAIGESCPADSDTLLASAFDLAFRLHKGQFRVSGDPYISHPIAVAD
LLRDIGASPTVIAAGFLHDVVEDTSITLPELEAYFGSEVRGLVEGVTKLG
GIHFTNRTEAQAENLRKMFLAMARDIRVVLVKLADRLHNMRTIEVLQPAK
QQRIALETREIYAPLANRLGIGRFKWELEDLAFKLLEPESYKKIQQEVAT
KRSEREKRLHLTIELLKNRLINAGLNDCNIDGRPKHLFGIWSKMEKQDKE
FHEIYDVAALRIIVPNLETCYRALAVVHDTFRPIPGRFKDYIGLPKPNGY
QSLHTAVIGRHRPIEVQIRTQEMHQVAEFGIAAHWKYKEGGSPASGNTER
FNWLRQLVDWQQEEGSSDHNDYLSSIKEDLFDEEVFVFTPKGDVVGLRKG
STAIDFAYRIHSEIGNHCHGVRINDKLCPLATALNNGDFVEVVTSNTAHP
SLDWLNFVATPTARNRIRQWYKVSHRDETIQRGKDLLERDLGRQGFDTLL
NSEAMTKVATRCNLKSTDDLLAALGFGAVTLHQILNRLQEEIRLQNMNQV
SPETNAKVAQDISDRRDTLSPNKTSTKASPIMGLEGLDYRLGGCCSPLPG
EDILGTVALGNHGITIHRQDCINVENIPIARQLTVKWNEKSIQQETKFSA
KLRIEVIDRVGVLKDILMRLSDSGINVSDARVQTAYGKPACIDLKVEVKN
SNQLTMTINKIRAMADVLDIARTGIN
>Pro1094 srmB, Superfamily II DNA/RNA helicase
MAKTKSNEDISTSNVSSNSDPSISIESETEEHISITEVDASQLENVEKAS
NGFEGFGFSEALLKTLKNKGYEEPTPIQKASIPELMLGRDLLGQAQTGTG
KTAAFALPLLERINSKERNPQVLVLTPTRELAMQVAESFKAYSEGHANIN
ILAVYGGSDFRSQIYSLKRGVEIIVGTPGRVMDHIRQGTLNQDSLQCLVL
DEADEMLRMGFIDDIEWILEQLPNERQMVLFSATMPPEIRKLSKRYLRDP
AEITIKAKKKEAQLIRQHYITVQNSYKLEVLRRVLELNYGEGVIIFARTK
AITLKLAESLEASNHNVAVLNGDVPQNLRERTVERLRQGGINILVATDVA
ARGLDVERIGLVINYDMPFDSEAYVHRIGRTGRAGRSGEAILFISPRERS
YLNNLERAVGQSIERMEIPNNESINNHRIQKIKRDLLTTASQKRKDQEET
NLIKEVINEIESELEITPKEIALAAINLSIGESPLLINTDESWINQAERF
RKSNDRRDNRGRSRRRNDLDIGTTEKDKERFRVDVGHRDRVKPGNIVGAI
ANESGLNGRMIGRIQIFESYSLVDLPKGMPTKIFQSLKRVKVMNKELNIN
RYT
>Pro0760 umuD, UmuD ortholog, peptidase family S24
MRLHGAHPNPSNLLLPLPSESVTAGFPSPADNYVEDNIDLNEELIHRPAS
TFFLRVKGDSMSNAGILDGDLLIVDRSLDAKPGNIVVAILDGAFTLKKLT
YRKNIPYLEAANHNYPIIDLRRYGAVQIWGVAIYSIHTLPRRK
>Pro0988 vacB, Exoribonuclease R
MFTVAKILELLPQEGSLEIKTLEKMLKLSRKIERTRLEIAIKALAKLGII
EQKNDHHIQKGNIENTIPATIRCSSKGYCFAVREDGEEDIYIREKFLNHA
WHGDKVLVRISREGIRRRSPEGEVLCILERTKTNILGTINENNNEIIGKP
LDERILSSINLPLENSRFIDKDEKINIVDIKINRYPIGQLPATGEIVRKL
SLNNGPEGDLEIIKTKYNLLDSSVAPNVALKKPLQKNRNNLESQPCILFK
SWSSKNCPLLPALYSEPSNGGMTLWIHIPTIGERLNYGSKLDEWIRNRSN
SICFGEEWQCFLGDKLNKEAGFEIGKSNSAITLELFIDKNGKCQSWEFYL
STIKPVAKVSQKNLDDILKRKKRSRIVPASLKLLKDYINNIEDLLYISKI
INENLIKAGLIQLDLPVPVIENLEDLDKTVPGGEFNGWSDTYKDKDPQSI
ISVFTKYANIILKDHFISYNISFIALKFKQPDNIQLNDVIKSALVLDTKI
NVNEEGIISFKDLILSLKESPNKRLIEKIISNTILDKYYSIPTSNSDDLG
LSKEDSTNLISADIEAPWSSPGMNYADVINQFILLKLLNEGKSYKSKRKG
SDQSLGSININQDNNWEIFDINAKEYLAKVCSKTNLRTLNTKKKQTKSFR
NGLISMIQLRSVEKSIGKIIQGTITGVQSYGFFVEIDPSMSEGLVHVSTL
EDDWYEYRSRQNLLIGRKNKKTFQIGDKVNVSIEKVDLLRNQIDLNVKIE
DGNSEIESSQTVTTNHTK
>Pro0969 vacB, Exoribonuclease R/ribonuclease II
MVHKRAFTRKCLIESKSILGRDIISNKDHHKYKDITNLKTYTIDDPNTIE
IDDAISLEKRGDKCFLWIHIANPAETISLNSALAQEAMIRSSTIYLAESI
SYMFPKELIREKISLVQGKESLAISLKLELSDKGDINSFSIERTKIKPDY
KLSYEEANEILDYQPKEETELIIFYNLINQHYNNRIKQGAIIIEESEGII
FKKDNYYQHKIRKMSPSRRLISESMIIYGELIAEYCFSKKIVIFYRNQSP
ATLVDIKKLKFFNNNHVKNYILKSSLGKSNIEIKPKKHYSLALNKYSQAT
SPLRRYCDFINQHQLLSYFNNKKQLSEVEMLSILDKVKLSQTQNIQLTRA
NKRNSILSYLEHTKKKKWNVIFMRWMVKKEKLALLYFSDIYLDIVCSLNG
YDQDLLGYEFIIHLDQLDSGLDIIKVTAINYN
>Pro0564 wecD, Acetyltransferase, GNAT family
MIKKIGERKISFSGWSNGRSGSNDFREMYGSDACECISSNDQYTFVFSQV
RTLDLIELEQLLQSVGWSRRPIRRVKKALDNSLLKVGVWQHDPKFPRLIG
FARCTGDEVIQATIWDVAIHPVYQGFGLGKELMSYVLRSLKDKGIERVVL
FADPGVISFYQSQGWTLEPKGNRCAFWYAN
>Pro0877 wecD, Acetyltransferase
MKNKDFNIRKLLVDDIDTVTNWARNEGFAPGLGDVDIYRNTDNQGLWIGS
INDKPIGCIAGIKYNQLYGFLGLFIIDKIYRGNGYGVQLWRHVLNKLDTI
DCIGIEAALDRINDYEKWGFKSSSITTRWQISCFNQSLNITNYDFYSKKY
ILLEGSEIPQDMIQEYDKNKEYTPRPHFLSDWLSHQSGTVLALVNKKGLC
VGFSRIRPCLLRNGSGYRIGPLIADTPDLASYLLSNLTSHYSGVILIDSP
GRNTESNKLFRSLNFEPISHTVRMYRGNQPSISMREIYGLACLELG
>Pro1802 wecD, Acetyltransferase
MQRLKLIKHAKGAPGLRVFGLGPNLWPSKGLSKLKLLLDEHAFWASGRSE
ENLKKLLKGSNVVITVWRGNRIIGFGRATSDGIYRAVLWDIVVADDLQGL
GLGKKVVEALLSRPCIKGVERIYLMTTNSSEFYKQFGFENCHHQSLLIKS
NWS
>Pro1860 wecD, Acetyltransferase, GNAT family
MTKAEQNNFDVHLRPIKNLDHLVLREVYTDAIVSQGSVFYSNDQIEAWRG
LAFLPGVLDKPIEDGKGWLAVKQNQVEAFGLRYPSDRLALLYCRGRSMRK
GYATKLLQKIELDAFQEGITTLFTEASLFSHPLLLRSGWVEISIEKIEIA
SIPFDRFRMLKKL