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# Aquifex aeolicus VF5, VF5

>gid:860029  aa20  putative protein
MRLSEYKRSNSAQNFDEFFRKGYVSILYGDSGVGKTTISLYLCLLAGAGK
NLFHNLLKVKEPKKVAYISLELYKEDILEKLEPIRKRYRISTSEMEIMDL
DDISDYRSFEKILEQKRYDFVVVDSFVAFYEGKSIYDPVEVKEFIKKTRK
LARNSESHIMFIHHTIKSSGKNKTDRYQGVSTIKFLTTPFMQAYTEGKSF
RVLTIEKHNFAYPFEKIYYYINKNGAITWYINEKAKYEEILHKFEPILKH
LKDREYGMKTDELLNLSGLKKRTFYAHLNKLEEMGIIEWHHKGSKVSRVS
ISKRFKFILKRNNKFKRE
>gid:12220  acrR1  transcriptional regulator (TetR/AcrR family)
MGTKERILEVSKELFFEKGYQGTSVEEIVKRANLSKGAFYFHFKSKEELI
TEIIERTHKKIISLFEENKEKTPEELLEMFLEVLYREKKVVYIFLFDLLC
SEKFRNIYFEKIEDAKRRFEKFLEKHFPSKAEILSEIILGFLRQLILHYV
IKEERELPFLKEKLREGLKLIFEGVKKCG
>gid:13024  acrR2  transcriptional regulator (TetR/AcrR family)
MYILLFMGEKRSDTKEKILSSALKLFSKKGFKETTIKDIAKEVGITEGAI
YRHFTSKEEIIKSLLESITKELRHKLEVALQRGETDEEILESIVDTLIDY
AFSNPESFRFLNLYHLLKEYGEVKNLPGELILKFLNGLYLKRKLKTYPEI
ALAVVTGSVERVFIFKERNFLDYDEETIKKELKKVLKSAILA
>gid:11678  acrR3  transcriptional regulator (TetR/AcrR family)
MNDMSVQTRERIIKAAAKEFAEKGFYNTQISHIVESAGVARGTFYIYFKS
KEEVFEEILKKVVEDLKERIKPVDISRDPVEQVKENVKRVIDYALENREL
AKIILFRSCEPNYAKIIDCFFEDVVNLISRSLEKGIKLGILKPHDTEVVA
RVILGGVKEVIKSLICKRKLIQKKLRMNF
>gid:12192  aq_1018  putative protein
MLLRTLKKNLQGNADYIYEKLKFDISEELAKLMKQKGITKKELAHRMGVS
PAYVTKIFSAENISLKVIAKVLSALEADNYTLKLIPEDKSLLIDELDKWY
YSFKKTYRYIQPEEIENEIKEIPTAA
>gid:12410  aq_1324  putative protein
MNGGFYLQHRELCPACNRIALRVCEYMEPYPRVEAFCECCGYKAYDVPMK
LDKETVYRILDKLSRKEIGAVCIDDRCGSTDIVKLLREGTYAEFRCLDCG
AEWNSYEVKEAIKRVKNVLNYLKDGSRLAEVLKAQEGECPLCGWDIGHAH
EGYLVEIQCYVCGYHNEYKEEFPKEIPPEDACPQFPRAEETG
>gid:12428  aq_1345  putative protein
MMGLLKRLLRVVRAEAHSVVEKLEDPIKITEEGLRELRKQLKEAMEALAQ
VKASQIRFEREARNEKERAKALVKKAESLLLQAQEGKISPEEAEKLAAEL
IQKAELHEKNARRLEEEAKRQREMAVKLQAKIDELKVQIAKYEAELKTLK
ARLATARAVKKVNKQIAKVDPSDTIAMLERMKEKVEEEETLAQAYEELAK
QEVALDVESEAEKKLKEVESKQKLEELKKRLGLS
>gid:12529  aq_1482  hypothetical protein
MSKKTQINLKIERAKEEDLPKLVDLYLRAYKGLEEYAYTHPKDVKSYLKW
LWNRDKEGIFLAKVDGKIVGFGAGDANWFSRREGKRVGAIHEIVVDPEYQ
GHGVGTALMNTILEYFKKKGLDTAELWVGDENYKAINFYKKFGFQESGRY
NYWIRMIKKLQ
>gid:12550  aq_1510  putative protein
MKTLEKAFSVLEYLMEKGEAGVTEISEHLNLSKNNVFRALITFEEHGLVE
KDPETEKYKLGVNSVRLGYGYIQKNPLIKLSEPVFKNLRFKLLETVNLTV
LDDQKKYVVYVIEEETIKPVKVKSRLGMRFDLDAYTASAKALRKAVLGEK
GFVFDYEYNTQTEIAGGACVVRDYRGRPIGAVEIIAPIYRMPFDRVEKEI
KPTLQEVALELSLKLGYWD
>gid:12806  aq_1873  putative protein
MKILIVSFDKTLVDSLKEHLAQHEVYTAKNAEEAITLSPSDIDLIIFDAI
SGAISEEEINELYSKKFKNQKYVILYDELFPVDPKNILPPNKVLVLRDSP
PEEIIRRALEEKKEETKEEGIEIGASVPVEEELKTEKKEEKVEKEETGKA
KVLVVSFDKKLTDNITNALKGKFSVEVVRNIKSVKEKGLEADIIVYDAIS
GSIAEKNLMELAEVPQLREKHFIILVDELFPIDVEKINLPNKSTLNRDAG
AEAIAEEVEKVAQKVKKEEIKSMETEEVKEEKVREEIPEEVPQEVEEIKE
EKPEMSEIKEKTEAISTKEKTPEAVQVLAEKLSDEKFIRSLLVEAISKEL
HGVREEIKAEVRDYIKNVLESIIREEIERAFAEVGVAKIIREETKRIVEE
KIKELLK
>gid:12830  aq_1909  putative protein
MLRLWEELNRVENLFLELLDDPKKKDVLLYLICYCQLVRRDGEYEVELPK
LINCAEKPYKYISGNWQDVLLELGVLYLKDKKGKVYTGKEILLVKNPEGF
KVGILPDYREDFYKFYTKLLKYWSVLNSRRTLGSNTTPDYYTPLLVHTFN
EKLFKEAQYFSEILAMRFPKEKNLFLSVKLVSEFYREYAKTGRVKADNLN
DAINFLSDTPDVFYSVNVKKFKKDIKKFLENLNKGEFYYITIEFASENRG
KKRSILSKLWNFIKSLGGKRWNSRSSGMDYYSFIEHLLKKHRRQMMRSLE
SSTPRLQGT
>gid:12839  aq_1924  putative protein
MRFLTVDVGNSSVDIALWEGKKVKDFLKLSHEEFLKEEFPKLKALGISVK
QSFSEKVRGKIPKIKFLKKENFPIQVDYKTPETLGTDRVALAYSAKKFYG
KNVVVISAGTALVIDLVLEGKFKGGFITLGLGKKLKILSDLAEGIPEFFP
EEVEIFLGRSTRECVLGGAYRESTEFIKSTLKLWRKVFKRKFKVVITGGE
GKYFSKFGIYDPLLVHRGMRNLLYLYHRI
>gid:12927  aq_2049  hypothetical protein
MSKDKERRRKILQLLKERERTPKELATVFNVSLMTIYRDIKELEKEGLVE
RKHGTVYLKRETEDGKCVICSKEVDERFKVVFFLKEDKKVFACCPHCGLM
AFKKLGPNIQSALMRDFISCNPVNAFTSWYVVGADINPCCSPSAFSFSAK
YNAERFAQGFGGKVLNFEDAVEEINRLMSFGTRVKFNL
>gid:12931  aq_2056  putative protein
MVVQVQPVEVDVESLVTRVFLKAIDLLGGLHKLAEYRTLTWLPSLARAAF
VIVYREEFLKTEEEIAELVGLTRQTVRNILRADPELALYKIQHIDELTKE
EKKELRVHTAGGIAKLAYKKVKEGEEPKVFLEFCTMAAEALEVPWAYLLL
KKIKGTHFPINSPEELKEKVKGVVIKGMPAEEVVEKIEYPVKNPADLLHK
IKIHLKMMGVE
>gid:13011  aq_2164  putative protein
MKEDKKVLHVANMTNGLIVYPDYDYIVYFPSSYTAAGTPLYFPEFAVPID
LIKALLEEKKVIMYDATVHENKELTDAFLKGVPTFLMALNRAIHGTKGLF
EKLEKGYKVCPWQTPDIVQHAVYRLPKHYYKFLKKCVKLFAPEKRGKLWI
SIPENVELVVEKIDRRLNDNYEEIAKMIKEKKSIHTYRV
>gid:13015  aq_2170  hypothetical protein
MENLNIVTLTGAGISAESGIPTFRGKDGLWNKFKPEELATPEAFFRNPKL
VWEWYDWKRQLIAKAQPNEGHKILTKMEEEFPNFYLITQNVDGLHQRAGS
KKVIELHGNIWKVRCVECGNERYEYTTPLPEIPPKCEKCGGLLRPGVVWF
GESLPVDALSRAYELSREAHVFIVVGTSGVVYPAAELPFVAKENGAQVIE
VNPEETPITKIADMHFKEKASTGLKKVYDYLREKYGSKG
>gid:13027  aq_2185  hypothetical protein
MVKTRDKILKVGAEVIAHEGLRRFTAKNLASKIGISDAAIFKHFSSMEEI
AEEIIRRYTNECILKTKEAVTLGKTPKEKLERILEGHIELLEKTKGIIPI
ICFEFSRSDKRSIKKRISEFLNEYAQMVMEVIEEGIKIGEFRDDVDVEET
AYSIIGLLQAKAFQWFLRGKKGKIIKDPETIKKLILYGLLKH
>gid:11668  aq_268  hypothetical protein
MEKVNYELHYIIMIFSDTVRYALIALAYLALNRDRLVKVEEIAKVHKIPR
PFLAKVMHELSKRGVVYSVKGPRGGFSLAKEPDKITIWDIIELFGDAYKY
EMCLLMPHKCSEFADNPCIVHHKWEELKSQIQDFFKGTTIKDLINIEEKH
LFPVSR
>gid:11701  aq_321  putative protein
MSKLKTEKELKKREIMRVACKLFAQKGYHNTTMPDIAKALGMSVGNLYNY
FSSKEELAKEIMLFTSKLVGERLRKVNESNLDFKEKTKLLVKSFLQIALE
EPELINYFLKVYLVNTEVFKDDCKGFACVSDVVTEVMIFVSDGVEKGIFR
NQDFFTAFVTIMGPLGGIVFLHNEGLLEKPLLEYAEELAQNIWNALKA
>gid:11704  aq_324  putative protein
MYTLREPYKGYEVKVTLLPIEDIVIPPIQRDLSETLIKKLMLSIEKVGFV
DPILVVEGEEGKYEVINGQHRLKAAELLGIREIPAIILPQETKDYIISLN
VEKAPNLKDKAHQAYEIFMKYLKENPEMEEVELENMVEEPYFLTVGFITD
RFGEKRFPAYAFEKVLKKVDEFLGLPLEEAERERENRANVLRDVREVMEE
KYQELGLTNALHKEAIISKAFQSVYGKRVRKVDDDFYTVFEKIKEAIPRV
SFTEEELESF
>gid:11836  aq_499  putative protein
MKMNECKYTEPVKGYEIIFKEVETDKVVIPPIERPLSETLIERLVSSIQK
LGFIDPIMVVPEEQEGYYEVIDGQHRLEAAKIVGLEKVPAFVLPKELRNY
ILSFNIEKAPALKEKAIQAYNLFMEKLQQNPDMKEYELEPFIEYPFYITI
GFVIERLGDRKFPGSYFERILQKVDEFLDMPLKEAEKERENRARKLEEVK
IVLNQKAEELGITMSYEKHKIVSYAFQKLYGKGVRFLGEDFYTVFDNLKQ
AIQELTPEELGLTQGT
>gid:11908  aq_600  putative protein
MGTMPRRALGWTAEVLKRLHGINYPITKDTLREKLAGMSIRGVPVERVID
EIEVDKFDTPRDVLHYIAEAVHKLEERGEIPTETRKGIRWAAEVLKRIHG
EHFPMDKQKLKEKLAGLYWRGVPIEKVIDAMEVEQVESPADLLHQLSIAI
KKLEEQGEVA
>gid:11909  aq_601  putative protein
MMGLKVLLYDPDGEIAHFLEDIFEVTGHTLYPAGSEEEVFEYLKNEPEFF
FLPFSLKEAWVNSLKERATIPIFFLFSEEEEERAKGLGIPEVNLVRVPFN
PLELFERLGLLHKMKPKDFQEIGLFNTLVKSHLEEKGVKVKIKGSGGECL
VNTYPVSLSCRLEELKELLKKRLRTGRR
>gid:12111  aq_904  putative protein
MTPFKELQKFIHWKERFLRDYEKIEKGELEKIREEVKEMLGEEPDERLLK
ALRSMYVGGMEHRVEDEEIRYWTNWGGVKTYETFNRFPLLSDIELAFVFW
ALGKLFVPLLMHETGVKSEPFKKLSREEQEEAVLDELDTLWETQLTLILQ
ALQFLDLKSISSEKPSSEG
>gid:12463  arsR  transcriptional regulator (ArsR family)
MDCKELARIFYALSEPKRLCMVKLLLEREELCVCDFMRIFKESQPKISFH
LKVLREAGLVTSQKRGKWNYYRLNKEAPVIPCVEKLLKDVKLEEKIQLEV
KR
>gid:12393  cspC  cold shock protein
MSFRGTVKWFSKDKGYGFITREDTNADVFVHFTDIQMEGFKTLQKGQKVE
FDVVEDTKGPRAKNVRVLGE
>gid:11915  deaD  ATP-dependent RNA helicase DeaD
MTIPVALQGRDCLIQAKTGTGKTAAFGLPILNSLKEGEKALILAPTRELA
LQIRDNFRDFARYLNVRTFAFYGGTKVFGDLKVLRGGKVDVVIGTPGRIK
DLIERGALKTDDVRYFVLDEVDVMLDMNFKEDIDFIYSQLPEEKQVFFVS
ATFPKEVRELSHRYTKKPEFIKVESRELEPQIEERLLRVYSIREKIELLE
DVLRDFNKVIVFVNRKRDAKFLGEKLSTKGFRVGALHGDLPQRRREEILK
KFRRGFINVLVATDVASRGLDISEVEAVVNFHLPEDPKFTFTE
>gid:11730  dinG  ATP-dependent helicase (DinG family)
MDSISFYEYLLTKGFEERKSQREMIKIVEEALEEGGVKLIEAPTGTGKTF
AYLIPIIVNKQKAIISTGTKILQDQLKRDIEFLAGHWKLLTGQKVNYAVI
KGKGNYLCIDRFKKEEIPEADRLEVETFMETEWDGDLTLTGLASETIVKI
NVDDDYCTFAYRMACPFYRECYYWAKVKRREENADILVVNHSLLALKEFE
TKDKVLVIDEAHELDRYLTLATTFGISLYWFKDLQKSLEKLLGESVNIPA
EEFFRNNFEKLFDEESNEAALESLREYIPQMKTLLYIPLNEAVEKLRKKV
KEEVEKFVKETLMVSYTFKDFLENTLLFDRDLIDSVNAGYEEPTEREKEL
INKVKKIDYYRRKLNKLKAFIRTAEDEEEGVGYKVSRAWSKKLNGYNYRL
EAFLIFPRNVIDPEEYKAVILTSATVEPEDIYLTTGITGEFYTLPHNYDY
TTSTIFIEDTNPKKEDWKDKLTTNYYILRSEYDKVLVLLTNKEHLKLFEE
DEEVGIQGKDSLTRLIEFLRSGRIKALIGLDSLWTGVDVKGEKGILMSKL
PFENPRDPLTYHRLKFLEKVGEDPFTYQRRKAYIKFRQGVGRLIRQNSDK
GKIVLCDNRIWRYREFVDFLRSLGINIVSKGKFKRKKRTPFW
>gid:11729  flgM  anti sigma factor FlgM
MVNRIELSRLIGLLLETEKRKNTEQKESGTNKIEDKVTLSKIAQELSKND
VEEKDLEKKVKELKEKIEKGEYEVSDEKVVKGLIEFFT
>gid:12332  fliA  RNA polymerase sigma factor FliA
MKNPYSNQIEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGL
IKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLDFGSRQVREKERRIKE
VVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVFRD
FARDYSELIPSSTNVEEEVIKRELTEKVKEAVSKLPEREKLVIQLIFYEE
LPAKEVAKILETSVSRVSQLKAKALERLREMLSNPL
>gid:11952  hypB  hydrogenase expression/formation protein B
MCKDCGCSIPEHNHEHEHHHHHHHTNPALGDKKTVEVLKKILSANDEQAE
SNRRHFERHGILAVNLMSSPGSGKTTLLERTIELLKDELKIGVIEGDLET
NRDAERIKKKGAPAYQITTGQACHLDAFMVHEGIHHLPLEELDIVFIENV
GNLVCPASYDVGAHLNVVLLSTTEGEDKPEKYPVMFKNSQLMLITKADLL
PYMDFDVEKAVESARKVNPSLDVITLSAKTGEGMELWLDYLKFKLKVLRN
ALQKAKASP
>gid:12016  iclR  transcriptional regulator (IclR family)
MEHQYKDIYIIQNVHLALEVLFLLEKKPYTFEKLQEELRISRQKLQKILT
FLLESEWISFDEENKLYRLGIKNFELGVSYLKHLDIKKASKPILEEVAKK
VKENVYLTTRVSYEVLYIEKSEVEREVMILSRYGRVLPLYASASGKIYLS
HFDEKELENYFKTVKWVRHTPHTKTPEELLKELPKIRKEGYALNLEEYEE
EVVSAAAPVYDYAGKVNYTVTIVAPSYRMTKEDLTGWVKEILKESAQKIS
VKLGRIR
>gid:11931  lysR1  transcriptional regulator (LysR family)
MIDISKLKTFVTVAELGSFSKASEVLYITQPAVTQQIKALEKTVGAKLFQ
RQGGRMVLTEEGKRIYEIAKLLLNSYEGLMEEIARIKKDLKDTLFLVLSA
TPSEYIIPKIIAEFHKEFPSSKIKIFTGNSHDVEEGLVSGVLNVGIIERK
PSDKFVDIPFLEDEIVFFTYPEHPIAKEGEIEPERLYELDLVMREAHSGT
RKLVREKLEELGIMFDKLNIKIESTSSRNIIQIVKNGYGCSFLSKGLLNG
EIKAGNLVVVKIKGFEIKRRFHIIYPKNSTITFLASNFIQYLLEKTKEVE
LTV
>gid:12206  lysR2  transcriptional regulator (LysR family)
MVRNLFFHFMKDIDLKLIEIFCYVYEYKSVTKASSELNMSQSTISFHMKN
LETQLGQKLFYRKGKTLIPTAFADKLYEYATELTNFKRRMLEDITKFSGK
NGGVIRIGASSIPGNYLLPQLLGEFIENFKGYVNVELRVSDSQDIYEKVI
NGDVDLGIIGYLPRTNKVDAIKFYTDRILIVGNPELEDKVYTLEELINLP
LVIREVGSGTRSIVEDKLREKGLSLKEMNIVAVCNSNEAVKNTLKYVKGF
SFLSSYVVKDDKFLIKLKVKNFDDITRQFYLIRDKKRPLPFLTQELIKFL
IKDIYV
>gid:11971  merR  transcriptional regulator (MerR family)
MKKRKAYYTIGVVAKMYNIHPQTLRLYEREGLLKPSRSEGNTRLYTDEDL
ERLEFILFLTRELGVNLAGVDIILNLKEQMEQMQKQIDQLMEFIQNELSK
LQGEAYQRAIVKVPKTKVMKFEEVIVSRQKKSDEEE
>gid:11633  nifA  transcriptional regulator (NifA family)
MDLKVEIETLYEVSKILSSSLNLETTVPYIFRLLKKLMGFERLTLTIYDP
STDQIVVRATSSGKFPKEGFKKGEGITGKVWKHGVPIVIPDISQEPEFLN
KVWKRKKSKKKIAFIAVPIKSGGKVIGVLSADKEINEKDSLDEYTRFLSM
IATLIANSFSLERKVQAERKSLEEEKRALETELKRVYEKLHVEGIVGRSK
EILNVLEIVHRVAPTNATVLLRGESGVGKEVFARAIHFLSPRADKPFVAI
NCGAIPGELLEAELFGYEKGAFTGAYSTKKGKFELANGGTLFLDEIGELP
LHLQVKLLRAIQEKEIERIGGTRPIKVDVRIIAATNRDLESMVREGKFRE
DLYYRLNVVPIFIPPLRERKEDIPVLVHYFLEKFSKEYNKEVSITQEVMD
AFMKYEWKGNVRELQNVLERMVILDTDGVLSEEDLPPEIRDVKKESRIYN
QTLNGETIWDLEKQLIEKALEESGFVIKEAAKKLGMTPRQVSYRIQKYGI
KLPKKR
>gid:12746  ntrC2  transcriptional regulator (NtrC family)
MERLKLKEINVVNEITKILTGDYTFEESLKEVLKVLYSYLGVEHSFIAIR
EGNTLRIASSYGYFLNKDVAFKKGEGITGKVFQRGIPLVIPNVKHNSAFA
NKTGIGRLLTEKHALIAAPIKVGGEVKGVITIFKEFSDKESLENFYQTIN
VIGNLLGMFFKLREKFESEKKAWEEQRKELTRELSEKYSLHGLIGKSKVM
RELIDTIEKVAKTDSTVLILGESGTGKSLIARIIHYESSRREKPFLTVNC
ASIPETLLESELFGYEKGAFTGAYTTKKGKFELANGGTIFLDEIGDMPLS
LQAKLLRALQEREIERLGSEKPIKVDVRIITATNKDLEKLVKEGKFREDL
YYRINVVPLYVPPLRERKEDIPILIEYYLKELNKKYGKEVYLSEDALEVL
LEYDYPGNIRELINILERVVILNNGRVTSSELPELLRKRERKTGDLPKFI
EETEKKRIIEALEKTGYVKSRAAKLLGYTLRQLDYRIKKYGIELKKF
>gid:11660  nusA  transcription termination NusA
MVKAQLQKLIEQVATEHDLPERVVERALKNAIITAIRKEKKIRDELEVEF
TDEGIKVYVVRRKGNKKFKFPLDISPEDLNRLAAYAAKEEFYKELERAEQ
ERGYLEFKELEGEIVYGIVRKVLENGDVIVDLGRIDAILPKREQLPTDNF
KTGDKVKALLLEVRKRRGEPVLILSRTHPNFLRKLLEQEVPEIKEGLVEI
KAVARIPGERAKVAVEAKEMKMDPVGIVVGLKGMRIQKVSEELGGEKIDV
IRWSDDIAELIKRALAPAHPEKIKLFPYEKRAEVAVPEEELSLAIGKKGI
NVKLASKLTGWHIDVLSTKDFEKLEELRKKEDEGQTS
>gid:11572  nusB  transcription termination NusB
MRYRKGARDTAFLVLYRWDLRGENPGELFKEVVEEKNIKNKDAYEYAKKL
VDTAVRHIEEIDSIIEKHLKGWSIDRLGYVERNALRLGVAELIFLKSKEP
GRVFIDIVDLVKKYADEKAGKFVNGVLSAIYKAYITSSKEEKPSLKSE
>gid:12848  nusG  transcription antitermination protein NusG
MSEQQVQELEKKWYALQVEPGKENEAKENLLKVLELEGLKDLVDEVIVPA
EEKVVIRAQGKEKYRLSLKGNARDISVLGKKGVTTFRIENGEVKVVESVE
GDTCVNAPPISKPGQKITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLL
MAIEKTPHVFRPVMVGGKPVPLKEEEVQNILNQIKRGVKPSKVEFEKGDQ
VRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQVEKI
>gid:11700  phoB  transcriptional regulator (PhoB-like)
MRRKMERIALIEDDKDLAFLVKLNLEREGFEVEHFERATPFFKFISENSV
DLILIDIMLPDLDGFRIANFLKSRADLKEIPVIFITAKGEEEDKLKGFEL
GADDYITKPFSMKELIARVRAVLKRYKKVSESKVLKYEGVELDTERQKLF
VDGREVYLTPAEFKILKTLMENFGRPVSRSSLVEKLWDYERETTERAIDV
HVKHIRDKLGKYKGLIKTVRGVGYKFEN
>gid:12929  recG  ATP-dependent DNA helicase RecG
MDTAFVKDFIDNLLENDGLKLKRAIGVGIFLFNKLKEDAPDYILESLKEV
DKLPFEKKKAVLREVRKFLSEYEKRKKEGNFLEKTKRKPIDVFFNPIEKV
KILTKTQISTLKALGIETVYDALFYFPEKYEDKRLNTSIKTAKVGEKVAL
KVKVKEVKIKENERYTLEVVCTDGTGYITLKYRYKNPHFALKAFRKGMEI
VVYGKLKSFKGEKYMVHPEVKSPSSEELGKIIPVYYVRKRGELQEISSKT
KQKRVRTALTALSESLYRYFPEYMPDYLIEKYNFPDIALCIKELHNPKDI
SVNALNSFTDLYHKRVIYDELFLFQLALLLKKQEIKKEKAPKVNVDEKFL
RKAIEKLPFKLTRAQERAIKEILEDLSRDVPMNRLLQGDVGSGKTIVAIL
TSLAVVKSGYQVAVMVPTEILAHQHYKKFSEMLKDYGVNVALLTGSLTPS
QKKSVYKHVKEGNIHVLVGTHALIQDKVEFKNLGYVIIDEQHRFGVMQRK
LLLEKGKGLYPHCLVMSATPIPRTLALSIYGDLDISIIDELPPGRKEVIT
KLYFESQKEEVYKKVEEELKKGNKVYVIYPLIEESEKLNLKAATEEYERW
KKLFPDRKVLLLHGKMPDKEKLAVMEEFKREGDILVSTTVIEVGIDVPEA
TVMVIEDAHRFGLSQLHQLRGRVGRSDKEAYCLLVVPDEIKNEKNESLKR
LRVFVKTTDGFKIAEEDLKLRGPGEIIGVSQSGYFGFRVANLARSQDRAL
LGVARKDAEELLKNNPNLENLQDLKKLLIKKYGDKMELSFVA
>gid:12090  rho  transcriptional terminator Rho
MTQQTAQQEQQKSEVKIYSREELKQKTLAELQKIGKELGLTRTTGLKKEE
LIEKILKAQLEKSRLVFVKGVLEILPEGYGFLRMPENNYMPSWNDVYVAP
SQIKKFGLRTGDTIEGFARLPRENEKYKALIRMESVNGLPPDPEILKRRP
QFEKLTPLHPMERFKLEYDPNELSTRVVSLIAPIGKGQRGLIVAPPKAGK
TVLLQKIAQAIIRNHPEVYLIILLIDERPEEVTEMRRIVKDKAEVVASTF
DEPPERHMQVAEIVVEKAKRMVELKKDVVILMDSLTRFTRASNAVTPPTG
RVLTGGIEITAFQRPKKFFGAARNIEEGGSLTIIATALVETGSKMDDVIY
EEFKGTGNMEIHLDRRLMERRIFPAINIEKSGTRKEELLLEPWELQRIWV
LRKFLSTMDPVEAMEFLLEKLRRFKTNEEFLKAMNA
>gid:12143  rnc  RNase III
MKMLEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFF
IVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKI
NETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKK
DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGEGK
SKKEAEQRAAEELIKLLEESE
>gid:11525  rpoA  RNA polymerase alpha subunit
MLNEFIYPDKIFWEEKTDTYGRLVVEPLERGFGTTVGNSLRRVLLSSISG
TAITAVKIYGIYHEFSAIEGVQEDAIELIANLKKIKFLMKGDSDVEILYL
QKKGEGEVKASDIKTPPNVEILNPDQYIATITDPNKELNIEIRVERGRGY
VPVEEMEAIGEVGWILVDADFSPVKKVGFRVDNVRVGKKSTYERLTLEIF
TNGIKTPDQCMQEAIEILKKHYELLENIFTEKPTVPQKVAVDELAEKLSL
SIEELDISQRALNSLKRIGITTIGDLVRMTEDELKSTKNIGRKALAEIKE
ALHKLGLELGMNIETQR
>gid:12853  rpoB  RNA polymerase beta subunit
MAKIALPRKFFGRRFEVLEPPYLLSIPKNSFENFVQLKVNPYKRKNVGLE
HIFRTSFPFKDPDENFILEYLGYEIGDWECNRCGYKPKDDLLGGWDVDCP
QCGAKLVYKEKFTPEECKLKGLTYSAPLRVMLQLKAKTKNGYREFPPKKV
YFGEIPLMTETGSFIINGTERIIINQLIRSSGVFFDEKEEKQKDATITRI
LYRGSIIPDKGSRVEFELSGATDLISARIDRKKLSATAVLRAFGLETAYD
ILKYFYEDVRKFIVKDKYLYDAQTGEEFTPEDLEHHYIFAIIKFRGKLVG
FASSKERDFIEERYIEEWEDLVRLLDDDRIEVLSVTAVPRDVVIKSPYGK
SLIDTLANDTSPKDVDKRSPVKVPAEYTLRDYGLMEMYKRLRHIEAITME
IDSVIERARIFFNVFFRDLKRYDLSRVGRVKINAKVHRIPKVLKPADVDL
LDQLPPLALAEDYGEYKAGTRVTKDLLKELFKQYKEIKVKDYTEDEARFI
LPIDLVNILKYLIDLRHGRVKKDDIAHLGNRRVRSVGELLENQARLGIAK
MEKVFRDRSAVINPEQPDLKPQDFINPRYVTTAITDFLKTGQLSQYLDNT
NPLSELTHKRRLSALGPGGLTRESAKFEIRDVHPSHYGRICPIETPEGQN
IGLVTSPTVYARVNEYGFLITPYRKVENGKVTDKIEWLAAYEEENYVIAQ
STPTDEEGRLKAEFILARHKNDIRLVKPEQVEYIDVSPRQVISPSSSLIP
FLEHDDANRALMGSNMQRQAVPLIFTQAPLIGTGMEKKIARDSHAVVVAK
RGGVVEEVDSSKIIIRVNPEEINFDDPLDIGIDIYELRKFQRTNQKTCVN
QRPIVRKGEKVEKGQIIADGHSTDRGELALGKDVLVAFMPWRGYNFEDAI
VISERLVKEDVYTSIHIEELEVEARETKVGEEEITRQIPGVPERALAHLD
EHGIVRVGTYVKPGDILVGKVTPKGETRLTPEEKLLQAIFGEKTRDVKDA
SLRCPPGVEGIVIDVQVFTRKGTGKKDMLAEKVEREELEALEQELEKKKN
LIITGRDKVLKGLVLGRKVEKDAKVGRKTVKKGTVIDEKVFEEFVNYILG
RPENFFEDEDLIRKIREIAERTRTQIEMLNKVYEEKKETLLKRRDLPPGV
ITLVKVFIANKRKIKVGDKMAGRHGNKGVISVVLPVEDMPFLPDGTPVDI
VLNPLGVPSRMNVGQILETHLGWAAKELGKKIGEMIEKGRDRKAITEYLK
EIFAIGDKDGENAKFIEEFLNSLSEEEFWSVVRDYAERGIPMATPAFEGA
EEDAIKELLKKAGLPENGKTTLYDGRTGEPFDFEVTVGYMHMLKLIHMVD
DKIHARATGPYSLVTQQPLGGRAQFGGQRLGEMEVWALEAHGAAYTLQEM
LTVKSDDVEGRTKVYEAIVKGKYTYTPGIPESFKVLVRELKALGLNVKCL
NGEEKPCDEVEVKEEEEK
>gid:12854  rpoC  RNA polymerase beta prime subunit
MSEARRGIFPFSKIKLMLASPEDIRSWSHGEVKRPETLNYRTLKPEKDGL
FCAKIFGPIKDYECLCGKYRGKRYEGKICEKCGVEVTTSYVRRQRFGHIE
LAAPVVHIWFLKSTPSKIGTLLNLTSRDVERVAYFESYLVIEYPNEEEEE
KFEKDEHTIPLNDGISTKWVKLHVVNEEEFEEKYAFTIDEKYEHGMGAEI
LKEVLSKLDLDAYSRKLKEIVKPYSIGFEDLGKEIEQKYKNLYQKLIKVI
ADDFRAYGVEIKGLEDHGLSLEQAIHRILNEELYLNVETGEISLEDCGDS
CLTGRDALKEYYERVREHKKDIPIFEKIKEDIRSTVLREISEARIRKALR
TLQLVEGFKKSGNRPEWMILEVLPVLPPELRPLVALDGGRFATSDLNDFY
RRVINRNNRLKRLIELNAPDIIIRNEKRMLQEAVDALIDNGKRGNPVKQN
GRPLKSLADYLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELQMHQCGLPK
IMALELFKPFVYRRLEEKGYATSIKHAKRLVEQKTPEVWECLEEVVKEHP
VLLNRAPTLHRPSIQAFEPVLVEGKAIQLHPLVCPPFNADFDGDQMAVHV
PLGIEAQLESYILMLSTQNVLSPAHGKPLTMPSQDMVLGTYYITHDPIPG
RKGEGKAFGTFEEVLKALELGHVDIHAKIKVKVGNEWIETTPGRVLFNSI
MPEGQPFVNKTLDKKGLSKLITELYIRVGNEETVKFLDRVKELGFLRSTL
AGISIGVEDLQVPKAKKKIIEEALKKTEEIWNQYVQGIITNKERYNRIID
VWSEATNLVSKAMFEEIEKSKRIENGKEYPGTFNPIYMMAISGARGNRDQ
IRQLAGMRGLMAKHSGEFIETPIISNFREGLSVLEYFISTYGARKGLADT
ALKTAFAGYLTRRLVDVAQDITITERDCGTVKGFEMEPIVEAGEERVPLK
DRIFGRVLAEDVKDPYTGEIIARRNEVIDEKLAEKITKAGIEKVRVRSPL
TCEAKHGVCAMCYGWDLSQRKIVSVGEAVGIIAAQSIGEPGTQLTMRTFH
IGGAATAQKVQSFVKAESDGKVKFYNVKLIVNRKGEKINISKDAAIGIVD
EEGRLLERHTIPYGARILVEEGQEVKAETKLADWDPFNTYIIAEVGGKVE
LRDIILDVTVREERDPITGKTASVISFMRPRDAMLHTPRIAVITEDGKEY
IYDLPVNAILNIPPEKISLEWRVCPTCSESEETTIQHQYYVVKDLEVQPG
DILARIPKETAKVRDIVGGLPRVEELFEARKPKNPAILSEIDGYVKIYED
ADEVIIFNPRTGETAKYSIKKDELILVRHGQFVKKGQKITETKVAEIDGQ
VRIKGRGFKVIVYNPETGLQREYFVPKGKFLLVKEGDFVKAGDQLTDGTP
VPEEILRIKGIEELEKFLLKEVQMVYKLQGVDINDKHFEIIIKQMLKKVR
IIDPGDSRFLVGEEVDKEELEEEIQRIKLEGGKLPKAEPVLVGITRAALS
TRSWISAASFQETTRVLTDASVEGKIDELRGLKENVIIGNIIPAGTGVDE
YREVDVIPAEEKVLEEKKEPKEGS
>gid:12535  rpoD  RNA polymerase sigma factor RpoD
MLGRESVKALIEMGKEKGYVTYDEINEVLEEDVTSSELFEELIDILHRMN
IQVVESKEEYEEESEETQEEEEEVVVSGSLTSSSRDGDPVKLYLREMGKI
PLLKREEEIYYARQIEIGRKIMRRGLMRTSFLVEKILDDWAKLCNGKLKI
QEVMDLVEYENDDDFEDRFDEFKRFFIEKGYELAKAYRNLLDVREEYIKN
PSEESRKKYLYAHARMNKIIKEMKIKYAKFERVTEEIIKIYKEYARKRKD
LNARIRKLKALYKDPDYFAQNFLTDENLQKIVQEKNIPTEKVLNLINEYN
SLKREVQRIQNLIGVFPEEELPKVMKIIEQGRKKVVQAKQVMIQSNLRLV
VSIAKKYVNRGLHFLDLIQEGNIGLMKAVDKYDYRKGYKFSTYATWWIRQ
AITRAIADQARTIRIPVHMIETINKIIKASKKLFQENGREPTPEEIAEYL
DIPVEKVKKVMKFSQEPISLETPIGDDDDTFLKDFIEDKSIPNPEEQVTR
KLLREQLQKVLSTLSEKEREILMYRYGLVDGTEYTLEQVGKMFNVTRERI
RQIENKALRKLRHPARAKYLKDFEF
>gid:11907  rpoN  RNA polymerase sigma factor RpoN
MLNQRLEVRQKLNLKLLLKQDLELLTYQTQELEKLIHEEVLVNPLIKGVF
KKIPKSFEVKETVPYQIPYTPSELEELQQNIKLELEGKEQELALELLNYL
NEKGFLSKSVEEISDVLRCSVEELEKVRQKVLRLEPLGVCSKDVWEFLEL
QIEEIYPEEEEILKKALRDLKRGKKLKPEIKGKLSRLRLFPLSSSAEKVY
TFAKVDAIIEEENGEFFIYLYEDFIDIDLNEEYWELYKKSRNLQKELKEA
FERYESIRKVLDIRRRNLRKVLEKIVERQKDFLTGKGSLKPLTLREVSSE
IGIHESTLSRIVNSKYVKTPVGTYSLRTFFVRESAEGLTQGELMKLIKEI
VENEDKRKPYSDQEIANILKEKGFKVARRTVAKYREMLGIPSSRERRI
>gid:12507  rpoS  RNA polymerase sigma factor RpoS
MIPDTEQELINQYLKKISKIPLLTPEEEKELARRAKQGDKEALKKLVESN
LRFVVSVAKQYIGYGLPFSELIAAGNLGLLEAAKRFDPDRGVKFISYAVW
WIRQAIMQALSQQTGAVRIPLKQSHIINKISHIYGELSKKLEREPSPEEI
AEELSKQMIAKELEKELGREPTEEEIEERFKKEGYKITPEEVEKYLQVCR
VPLSLDAPVGENEDTFFIDFLSKHGTAEVEEKVIQEVIQKEIDDLLSKLT
DKERKVIELRFGLKGNEPKTLREIGEILGLSRERVRQLETRALRKLRSLA
MKRHLKDFLS
>gid:11612  rpoZ  RNA polymerase omega subunit
MSRRPKIEEAMKRVESRYELVHAAVRRTLQLLREGEDFFVQEGGEVHKKT
FAAIEDIAEGKVKIIKKKEESGSKEE
>gid:12070  spoT  (p)ppGpp 3-pyrophosphohydrolase
MSKLGEVSLEEDLEKLLSHYPQHAEEIQRAYEFAKEKHGEQKRKTGEPYI
IHPLNVALKLAELGMDHETIIAALLHDTLEDTDTTYEEIKERFGERVAKL
VEGVTKIGKIKYKSEQAENYRKLILATAEDPRVILLKLSDRLDNVKTLWV
FREEKRKKIAKETMEIYAPLAHRLGVWSIKNELEDWAFKYLYPEEYEKVR
NFVKESRKNLEEYLRKYVIPKVRKELEKYGIEAEIKYRSKHYYSIWEKTR
RKGIRLEDVHDILGVRIIVNTVPECYTVLGIIHSLFRPVPGKFKDYISLP
KPNLYQSLHTTVIADKGKLVEFQIRTWEMHERAEKGIASHWAYKEGKNPS
DAGVYSWLRELVESIQGSTNPSEVLENLKSNLFFEEVFVFTPKGDLVVLP
KGSTPVDLAYKIHTEVGNHCAGAKSNGRIVPLNYELKSGDVVEIITNPNK
SPSYEWLSFVKTSRARNKIKQFLKKQERERYLSEGKRILERIREKLGLSH
EDLINKIRERVRFDTEEELLLALGKRKISSANLIKLIFPKKKEEKEERRG
SSTVFLEDLSNIKHEVAKCCKPIPGDEILGVITRTKGLVLHEKSCSNLKN
VLRLNPEKVKEVQLQASGYFQTDIRVVASDRIGLLSDITKVISESGSNIV
SSMTNTREGKAVMDFTVEVKNKEHLEKIMKKIKSVEGVKICKRLYH
>gid:11892  stpK  ser/thr protein kinase
MEDFKSGDLILGYYKVLEKLGEGNFGKVYKVEALKGRYKGKVFALKVASN
PYSVHYLWKEAQTLILFHHQNIVSLQSYLYKKDKKELYLIYEYMDFGTLK
DYVEKKGKLSPEEALKVLRHVVNALEYLHSRGYIHSDLKPENVFGKRVLG
GVLWKLGDFSLVRIRGDVSIIDVKGTIGFIAPEIFRGEIHRSSDIYSLGC
LTLYMLTGKVPFEGKDFKERKEKNKRGEVEIPEEIPGKLKDLLERMLEVD
YKRRFRTARELKEYMVKEGLI
>gid:12926  vacB  VacB protein (ribonuclease II family)
MDKEKLEKEVIKLLSKKKKPLHFLQIAKALGLGKKERKTLKKVMRKLKKE
GKVKVVKGKYEYTGEEVVTGTVIAYPGGFGFLEVEGGKDIYIPPFEMVKV
FHGDVVKAKVTEFKGKKEVRIIKVLKRAKKDIVAKVVFEDEQCYVVPLDE
NAHHRILLSKKDCQKLKEGEVVVLKITQFPTKKSPARGKVIEVLGNPKEK
FIAIDVIIRKYNLPTSYPEKVIKEVEAIPEEIPEEEIKRRRDLREQLCFT
IDPEKAGDFDDAVAIELTPEGYYKLYVHIADVSYYVREGTETDKEAYKRG
FTYYFPDRALHMLPEKLSAKLCSLRPNEDKLAFTVEMVFDESGNLKAYDI
YESVIRSKARLTYNEALALIVGDPALEKKFPNLVEPLRMMETLYRILSRK
RWEMGSIDFDLPEAEVIVDEYGEPTAIYPYERHVAHRIIEHFMISANETV
ALHLEHAGYPCLYRVHEPPDEEKVENLLEILEGLGYKVKRPHEYTPKFFQ
KIIEDFEGRPEENLVRFLTLRAMARAKYSPHNVGHFGLALEHYAHFTSPI
RRYPDIIVHRLLKKALRGEEIDYEKTLAYLEEAGNHLSKQERIADEAEME
AIDYLKARYMKGRIGEEFIGIITGVVAFGFFVELEENLVEGLVKINTLTD
DEYVFDEPAHRLVGVRTGKVFRLGDHVKVRCIAVDEERARVEFELIEKLE
KHETL
>gid:12539  xylR  transcriptional regulator (NagC/XylR family)
MKKGIDIGGTFIKVLWEDGKKEKHYIKDLKKDREALMEKIREVIKAGNPS
GVGIAVAGFTSLNGIVYKSPNIPALDKTDFRKVLEDINIPFVVGNDVNLG
AFGEWYYDYRDSKILLLVAVGTGLGTGLVYKGEVFFGVCGSALEMGHHTV
KKGGELCNCGRKGCWEAYCSSYAIEREYKKLTGRTLKDYEIAEKAKEGEE
EALKVVESFKDYLITGLMNGVHIFNPDRIVLAGGVIETFKEFLRDVPEKV
KEISEELPALCLKISFSRAGEFMGARGALAYALKYL