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2024-05-03 17:06:14

Gene list

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COG category: Transcription
Organism: Pseudoalteromonas haloplanktis TAC125, TAC125

Number of genes found: 218

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Pseudoalteromonas haloplanktis TAC125, TAC125
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA PSHAa2408 putative transcriptional regulator (AraC/XylS family)chromosome I CDS2557970 795 - 0.394969
NA PSHAa1754 putative transcriptional regulator with periplasmic binding protein domain (LysR family)chromosome I CDS1840040 888 - 0.418919
NA PSHAa2354 putative orphan proteinchromosome I CDS2498117 468 + 0.352564
NA PSHAb0307 putative DNA-binding response regulatorchromosome II CDS359054 528 + 0.429924
NA PSHAb0014 putative transcriptional regulatory protein (LysR family)chromosome II CDS18444 912 - 0.411184
NA PSHAa2308 putative transcriptional regulator, LysR familychromosome I CDS2450391 846 + 0.367612
NA PSHAb0510 putative transcriptional regulator arsR familychromosome II CDS574881 546 - 0.39011
NA PSHAa0850 putative transcriptional activator IlvY (LysR family)chromosome I CDS878840 906 + 0.408389
NA PSHAa1537 conserved protein of unknown functionchromosome I CDS1599935 348 - 0.390805
NA PSHAa1893 putative Sigma-54 dependent transcriptional regulator/sensory box proteinchromosome I CDS1996799 1419 - 0.40451
NA PSHAa2834 Transcriptional regulator, ArsR familychromosome I CDS3008103 303 - 0.376238
NA PSHAb0015 putative transcriptional regulatory protein (LysR family)chromosome II CDS19630 903 - 0.41639
NA PSHAa1776 putative transcriptional regulatorchromosome I CDS1864953 699 - 0.41917
NA PSHAb0035 putative transcriptional regulator (MarR family)chromosome II CDS40331 492 + 0.396341
NA PSHAb0039 putative protein with helicase domainchromosome II CDS43759 4056 + 0.40927
NA PSHAa2948 transcriptional regulator, probably associated to the neighboring sensor (putative two-components system); LuxR familychromosome I CDS3124997 663 + 0.423831
NA PSHAa2120 putative transcriptional regulatorchromosome I CDS2241559 591 + 0.351946
NA PSHAb0429 putative transcriptional regulator, AsnC familychromosome II CDS489078 429 + 0.361305
NA PSHAa1341 conserved protein of unknown functionchromosome I CDS1388889 591 + 0.406091
NA PSHAa1381 putative transcriptional regulator, AraC familychromosome I CDS1446123 1011 - 0.420376
NA PSHAa0059 putative transcriptional regulator YdcR (GntR family)chromosome I CDS61514 1446 + 0.428077
NA PSHAb0028 putative Transcriptional regulator (LysR family)chromosome II CDS34766 789 - 0.406844
NA PSHAa2438 putative RNA polymerase sigma factorchromosome I CDS2588075 549 - 0.433515
NA PSHAa2885 putative transcriptional regulator, LysR familychromosome I CDS3056365 897 - 0.444816
NA PSHAb0185 putative transcriptional regulator, TetR familychromosome II CDS225263 585 - 0.374359
NA PSHAb0218 putative transcriptional regulator (AraC/XylS family)chromosome II CDS256710 903 - 0.400886
NA PSHAa1694 putative Glr3403 proteinchromosome I CDS1771047 468 + 0.418803
NA PSHAa2981 cold-shock RNAse Rchromosome I CDS3167434 2250 + 0.428444
NA PSHAa0651 putative transcriptional regulatorchromosome I CDS675317 573 - 0.408377
NA PSHAa2249 putative DNA binding proteinchromosome I CDS2387627 240 - 0.379167
NA PSHAa2912 putative transcriptional regulatory proteinchromosome I CDS3081230 708 - 0.379943
NA PSHAb0168 putative sirtuinchromosome II CDS209311 732 + 0.385246
NA PSHAa1402 putative transcriptional regulator, AsnC familychromosome I CDS1469825 459 + 0.396514
NA PSHAa0427 putative transcriptional activator for lysine biosynthesis (LysR family)chromosome I CDS444374 933 - 0.385852
NA PSHAa1739 putative regulatory protein, GntR familychromosome I CDS1821158 903 + 0.389812
NA PSHAa1771 putative GalR repressor of contiguous operon, likely to bind a galactosidechromosome I CDS1857827 1017 + 0.417896
NA PSHAb0538 putative transcription regulatorchromosome II CDS602992 507 - 0.390533
NA PSHAa1580 conserved protein of unknown function ; putative Transcriptional regulator of the TetR/AcrR family.chromosome I CDS1646181 576 + 0.348958
NA PSHAa0979 putative transcriptional regulator (LysR family)chromosome I CDS1014469 903 + 0.413068
NA PSHAa0435 putative transcriptional regulator, AraC familychromosome I CDS451705 1014 - 0.414201
NA PSHAa0053 putative transcriptional regulator (LRP/AsnC family)chromosome I CDS55661 456 - 0.394737
NA PSHAb0339 putative bacterial regulatory protein, MarR familychromosome II CDS391191 432 + 0.384259
NA PSHAa2539 putative transcriptional regulator (BolA family)chromosome I CDS2691118 258 - 0.379845
NA PSHAa2446 putative bacterial regulatory protein LysR Familychromosome I CDS2594007 918 - 0.417211
NA PSHAa2319 putative lipopolysaccharide kinase familychromosome I CDS2459352 720 + 0.408333
NA PSHAa1504 putative transcriptional regulatorchromosome I CDS1579344 960 + 0.397917
NA PSHAa0565 putative transcriptional regulatorchromosome I CDS586328 1011 - 0.398615
NA PSHAa2460 putative bacterial regulatory protein LysR Familychromosome I CDS2611727 903 - 0.44629
NA PSHAa1306 putative transcriptional regulator of the LysR familychromosome I CDS1361080 948 - 0.420886
NA PSHAa0042 conserved protein of unknown function; similar to E. coli YjfJ; could be a phage proteinchromosome I CDS45093 693 + 0.414141
NA PSHAa2941 putative transcriptional regulator sensing dicarboxylateschromosome I CDS3117154 360 - 0.436111
NA PSHAb0162 DNA-binding response regulator of two-component systemchromosome II CDS201780 672 - 0.418155
NA PSHAa2149 putative transcriptional regulator containing an Adenosine deaminase domain and an AraC-type DNA-binding HTH domainchromosome I CDS2276528 1017 - 0.446411
NA PSHAa2995 putative transcriptional regulator, DeoR familychromosome I CDS3184573 699 - 0.426323
NA PSHAa2918 putative transcriptional regulator, LuxR familychromosome I CDS3087287 657 + 0.368341
NA PSHAa1600 putative cold-shock DNA-binding domainchromosome I CDS1664638 612 - 0.400327
NA PSHAa1363 putative transcriptional regulator, LacI familychromosome I CDS1423006 1017 - 0.434612
NA PSHAa0699 putative regulator in two-component regulatory system ; LuxR familychromosome I CDS727431 651 + 0.384025
NA PSHAa1221 conserved protein of unknown functionchromosome I CDS1268322 945 + 0.398942
NA PSHAb0002 putative transcriptional regulator for chromosome partitioning (parB family protein)chromosome II CDS1414 963 + 0.416407
NA PSHAa1485 putative Serine/threonine protein kinasechromosome I CDS1564094 1815 + 0.420386
NA PSHAa2215 putative transcriptional regulator LysR familychromosome I CDS2353074 867 + 0.429066
NA PSHAa0434 putative orphan proteinchromosome I CDS451103 207 + 0.333333
NA PSHAa2639 putative Transcriptional activator RfaHchromosome I CDS2792823 486 - 0.37037
NA PSHAa1387 Transcriptional regulator, LysR familychromosome I CDS1452474 954 + 0.421384
NA PSHAa1376 conserved protein of unknown functionchromosome I CDS1440436 543 + 0.440147
NA PSHAb0213 putative transcriptional regulator, LysR familychromosome II CDS250837 900 - 0.418889
NA PSHAb0181 putative arsenic resistance operon regulatorchromosome II CDS220203 345 + 0.414493
NA PSHAa1365 putative transcription regulatorchromosome I CDS1425506 1014 + 0.423077
NA PSHAa1468 putative transcriptional activator protein, LysR familychromosome I CDS1546468 885 - 0.4
NA PSHAa1975 putative Acetyltransferase, GNAT familychromosome I CDS2077278 642 - 0.400312
NA PSHAb0105 putative transcriptional regulator (LysR family)chromosome II CDS124040 888 + 0.43018
NA PSHAb0440 putative Transcriptional regulator, LysR familychromosome II CDS502584 903 + 0.408638
NA PSHAa0573 putative AraC-family transcriptional regulatory proteinchromosome I CDS592682 1002 - 0.421158
NA PSHAa0174 putative acyltransferasechromosome I CDS182867 894 + 0.422819
NA PSHAa0452 conserved protein of unknown function; putative transcriptional regulator (hipB)chromosome I CDS471494 321 + 0.345794
NA PSHAb0030 putative AraC-like transcription regulatorchromosome II CDS36438 861 - 0.398374
NA PSHAa2414 putative bacterial transcriptional regulator LuxR familychromosome I CDS2562895 795 - 0.389937
NA PSHAb0146 putative transcriptional regulator (LysR family)chromosome II CDS181378 885 - 0.366102
NA PSHAb0249 putative transcriptional regulator, LysR familychromosome II CDS293780 843 - 0.377224
NA PSHAb0369 putative transcriptional regulator with periplasmic binding domain (LysR family, YafC, YeaT)chromosome II CDS430505 939 - 0.402556
NA PSHAa0959 RNA polymerase sigma factor; putative RNA polymerase sigma-70 factor, ECF subfamilychromosome I CDS990463 558 - 0.403226
NA PSHAa1261 putative transcriptional regulator of the LysR familychromosome I CDS1318171 954 + 0.41195
NA PSHAa1489 putative transcriptional regulator, TetR familychromosome I CDS1568046 675 - 0.4
NA PSHAa1445 putative transcriptional regulator (positive) of LysR familychromosome I CDS1522550 894 - 0.40604
NA PSHAa2281 putative transcriptional regulatorchromosome I CDS2426039 669 - 0.378176
NA PSHAa1453 putative Transcriptional regulatorchromosome I CDS1531727 435 - 0.425287
NA PSHAa1830 putative transcriptional regulator with periplasmic binding protein domain (LysR family)chromosome I CDS1922828 885 - 0.419209
NA PSHAa2419 conserved protein of unknown functionchromosome I CDS2569032 450 + 0.342222
NA PSHAb0326 putative transcriptional regulator (TetR/AcrR family)chromosome II CDS379542 636 + 0.430818
NA PSHAa1826 putative sigma factorchromosome I CDS1918375 576 - 0.380208
NA PSHAb0260 putative transcriptional regulator, AraC familychromosome II CDS306178 999 - 0.405405
NA PSHAa2477 putative bacterial regulatory protein LysR Familychromosome I CDS2626582 846 + 0.420804
NA PSHAa0641 putative ATP-dependent RNA helicase(rhlE-like) ; DEAD-box protein familychromosome I CDS660520 1299 + 0.437259
NA PSHAa1588 putative transcriptional regulator with homeodomain-like DNA binding domain (AraC/XylS family)chromosome I CDS1653812 855 - 0.381287
NA PSHAb0052 putative AsnC-family/Lrp-family transcriptional regulatorchromosome II CDS56749 453 + 0.408389
NA PSHAa2990 conserved protein of unknown functionchromosome I CDS3180372 861 + 0.367015
NA PSHAa0628 conserved protein of unknown function ; putative two-component system response regulatorchromosome I CDS649357 690 - 0.434783
NA PSHAa1236 putative transcriptional regulator of the LysR familychromosome I CDS1285664 936 + 0.438034
NA PSHAa2189 putative Transcriptional regulator, LysR familychromosome I CDS2326857 924 - 0.409091
NA PSHAa1528 putative DNA binding proteinchromosome I CDS1595678 402 + 0.41791
NA PSHAb0290 putative N-acetyltransferasechromosome II CDS340319 483 + 0.397516
NA PSHAa0131 putative response regulator in two-component regulatory systemchromosome I CDS140704 720 - 0.409722
NA PSHAa1276 conserved protein of unknown functionchromosome I CDS1334629 579 + 0.350605
NA PSHAa2351 putative transcriptional regulatorchromosome I CDS2494034 252 + 0.357143
NA PSHAa1822 putative transcriptional regulatorchromosome I CDS1912581 939 + 0.412141
NA PSHAa1942 Transcriptional regulator, LysR familychromosome I CDS2050254 903 - 0.41639
NA PSHAa1405 putative response regulator in two-component regulatory systemchromosome I CDS1473238 825 + 0.384242
NA PSHAa2967 transcriptional regulator, MarR familychromosome I CDS3151898 480 + 0.420833
NA PSHAa0575 putative Zn(II)-responsive transcriptional regulator, regulates Zn export (MerR family)chromosome I CDS595007 387 - 0.359173
NA PSHAb0003 putative DNA helicase with SNF2 domainchromosome II CDS2802 3147 + 0.368605
NA PSHAa1369 conserved protein of unknown functionchromosome I CDS1430474 1287 - 0.420357
NA PSHAa0087 putative acetyltransferasechromosome I CDS91721 411 + 0.423358
NA PSHAa1010 putative Zn(II)-responsive transcriptional regulator, regulates Zn export (MerR family)chromosome I CDS1048600 435 + 0.413793
NA PSHAb0542 putative transcriptional regulator, asnC familychromosome II CDS606765 432 - 0.418981
NA PSHAa0315 putative transcriptional regulator, LysR familychromosome I CDS329457 939 + 0.410011
NA PSHAa0861 putative transcriptional regulatory protein RstAchromosome I CDS889981 705 - 0.415603
CheB PSHAa1150 Response regulator CheB (receptor modification enzyme, protein-glutamate methylesterase)chromosome I CDS1194712 996 - 0.414659
algR PSHAa0923 putative alginate biosynthesis regulatory proteinchromosome I CDS952047 702 + 0.387464
alyll PSHAa1748 putative chondroitin AC/alginate lyasechromosome I CDS1831286 2217 - 0.40009
arcA PSHAa0551 aerobic respiration control protein arcA (Dye resistance protein)chromosome I CDS566343 717 - 0.408647
argR PSHAa2659 transcriptional repressor of arginine synthesis (ArgR familiy)chromosome I CDS2813511 495 + 0.408081
asnC PSHAa2797 transcriptional regulator of asparagine biosynthesis (AsnC family)chromosome I CDS2975111 459 + 0.379085
baeR PSHAa2195 Transcriptional regulatory protein in two-component regulatory system with baeSchromosome I CDS2331259 681 - 0.381791
betI PSHAb0420 putative transcriptional repressor for the cellular response to osmotic stress (TetR/AcrR family)chromosome II CDS480825 591 - 0.417936
cpxR PSHAa0375 Transcriptional regulatory protein CpxRchromosome I CDS391491 690 - 0.417391
csgD PSHAb0193 putative csg operon transcription regulator (LuxR family)chromosome II CDS231256 690 + 0.355072
cspC PSHAa1184 cold shock protein, transcription antiterminator, affects expression of rpoS and uspAchromosome I CDS1233082 204 + 0.426471
cspD PSHAa1726 nucleic acid-binding domain, cold-shock RNA chaperonechromosome I CDS1805658 219 + 0.383562
cspE PSHAa2979 RNA chaperone, transcription antiterminator, affects expression of rpoS and uspAchromosome I CDS3166556 210 + 0.404762
cspE PSHAa2978 RNA chaperone, transcription antiterminator, affects expression of rpoS and uspAchromosome I CDS3166159 210 + 0.4
cspE PSHAa2980 Cold shock-like protein cspE, RNA chaperone, transcription antiterminator, affects expression of rpoS and uspAchromosome I CDS3166953 210 + 0.395238
cspX PSHAb0078 Cold shock proteinchromosome II CDS89904 210 + 0.4
cspX PSHAb0386 Cold shock proteinchromosome II CDS448317 210 - 0.4
cspX PSHAb0384 Cold shock proteinchromosome II CDS447918 210 - 0.404762
cspX PSHAb0387 Cold shock proteinchromosome II CDS448717 207 - 0.381643
cusR PSHAa2775 putative response regulator in two-component regulatory system with CusS, regulation of copper resistancechromosome I CDS2952009 675 + 0.422222
cusR PSHAb0012 transcriptional activator of copper resistance (two-component regulatory system with CusS)chromosome II CDS16187 687 + 0.429403
cysB PSHAa1162 Cys regulon transcriptional activator (LysR family)chromosome I CDS1206653 978 + 0.396728
dbpA PSHAa0109 putative ATP-dependent RNA helicase; putative cold-shock protein; could be specific for rRNA foldingchromosome I CDS113841 1389 + 0.416127
deaD PSHAa0990 ATP-dependent RNA helicase, cold shock protein Achromosome I CDS1024855 1851 - 0.43436
dinG PSHAa1991 putative ATP-dependent helicase DinGchromosome I CDS2102278 2076 + 0.412813
fabR PSHAa2896 transcriptional regulatorchromosome I CDS3065373 621 - 0.441224
fadR PSHAa0838 fatty acid metabolism regulator proteinchromosome I CDS866110 714 + 0.401961
fis PSHAa0346 DNA-binding protein for site-specific recombination and inversion, transcription of rRNA and tRNA operons, and DNA replicationchromosome I CDS359309 291 - 0.415808
flgM PSHAa0764 putative negative regulator of flagellin synthesischromosome I CDS797324 321 - 0.404984
fliA PSHAa0809 Polar Flagellar-specific RNA polymerase sigma factor FliA (sigma F)chromosome I CDS840916 711 + 0.369902
gcvA PSHAa1064 transcriptional regulator (postitive) of cleavage of glycine (LysR family)chromosome I CDS1100703 897 + 0.416945
glpR PSHAb0550 transcriptional repressor for the dissimilation of sn-glycerol 3-phosphate (DeoR family)chromosome II CDS616236 762 - 0.354331
gntR PSHAb0478 putative transcriptional repressor for gluconate/idonate utilization (GalR/LacI familiy)chromosome II CDS539655 951 + 0.392219
greA PSHAa1230 transcription elongation factor greAchromosome I CDS1280599 477 + 0.387841
greB PSHAa2851 transcription elongation factor and transcript cleavagechromosome I CDS3024830 480 + 0.3875
hdfR PSHAa2568 putative transcriptional regulator, LysR familychromosome I CDS2714555 864 - 0.409722
hepA PSHAa2624 RNA polymerase associated protein (ATP-dependent helicase HepA)chromosome I CDS2775671 2895 + 0.433161
hutC PSHAa2738 Histidine utilization repressor (GntR family)chromosome I CDS2905088 714 + 0.418768
iscR PSHAa2672 transcriptional repressor of the iscRSUA operon, involved in assembly of Fe-S clusterschromosome I CDS2825956 492 - 0.406504
lexA PSHAa2873 transcriptional repressor for SOS responsechromosome I CDS3046615 549 - 0.408015
lrp PSHAa1717 transcriptional regulator of lrp regulon and for high-affinity branched-chain amino acid transport system (AsnC family)chromosome I CDS1796346 480 - 0.4
lrp PSHAa2263 leucine-responsive regulatory proteinchromosome I CDS2403903 483 - 0.428571
metJ PSHAa2724 transcriptional repressor for methionine biosynthesis (MetJ family)chromosome I CDS2890331 321 + 0.386293
metR PSHAa1181 Transcriptional activator MetRchromosome I CDS1227505 888 - 0.387387
mfd PSHAa1836 transcription-repair ATP-dependent coupling factorchromosome I CDS1928141 3474 + 0.434945
nagK PSHAb0149 putative N-acetylglucosamine kinase with Actin-like ATPase domain/transcriptional regulator (NagC/XylR (ROK) family)chromosome II CDS183945 876 - 0.405251
nanR PSHAb0152 transcriptional repressor of aminosugar metabolism (GntR family)chromosome II CDS188134 633 - 0.418641
norR PSHAa2883 transcriptional regulator of anaerobic NO reduction and detoxification (EBP family)chromosome I CDS3054543 1587 + 0.436673
nusA PSHAa0996 transcription elongation protein (N utilization substance protein A) (L factor)chromosome I CDS1031436 1500 + 0.422667
nusB PSHAa2370 transcription termination factorchromosome I CDS2517706 411 - 0.379562
nusG PSHAa0217 component in transcription antitermination; couples translation and transcriptionchromosome I CDS224907 558 + 0.408602
ohrR PSHAb0179 putative OhrR transcriptional regulator, MarR/EmrR familychromosome II CDS219055 435 - 0.381609
ompR PSHAa2850 response regulator in two-component regulatory system with EnvZ, regulates ompF and ompC expression (OmpR family)chromosome I CDS3023917 720 - 0.456944
oxyR PSHAa0760 putative hydrogen peroxide-inducible genes activator similar to OxyR (but also to other LysR like activators)chromosome I CDS793770 909 + 0.391639
parB PSHAa3016 ParB family proteinchromosome I CDS3204330 927 - 0.391586
pdhR PSHAa0390 transcriptional repressor for pyruvate dehydrogenase complex (GntR family)chromosome I CDS403616 750 + 0.405333
phoB PSHAa0597 phosphate regulon transcriptional regulatory protein phoBchromosome I CDS624071 690 + 0.444928
phoP PSHAa1283 response regulator in two-component regulatory system with PhoQchromosome I CDS1341831 675 - 0.41037
pspA PSHAa2049 negative regulatory gene for the psp opreon, phage shock proteinchromosome I CDS2165564 579 - 0.416235
pspA PSHAa0500 putative negative regulatory gene for the psp operon, phage shock protein Achromosome I CDS516432 681 + 0.387665
pspC PSHAa0501 putative phage shock protein Cchromosome I CDS517123 207 + 0.352657
pspC PSHAa2047 transcriptional activator of the psp operon with PspB, phage shock proteinchromosome I CDS2164847 402 - 0.402985
pspF PSHAa2050 transcriptional activator of phage shock proteins (EBP family)chromosome I CDS2166409 1086 + 0.425414
recG PSHAa2799 ATP-dependent DNA helicase recGchromosome I CDS2976417 2022 + 0.433729
relA PSHAa0739 (p)ppGpp synthetase I (GTP pyrophosphokinase)chromosome I CDS772338 2157 + 0.433009
rhlB PSHAa0114 ATP-dependent RNA helicase with nucleoside triP hydrolase domain, putative cold-shock proteinchromosome I CDS120724 1263 + 0.4038
rhlE PSHAa1930 putative ATP-dependent RNA helicase with P-loop hydrolase domainchromosome I CDS2039821 1401 - 0.441114
rhlE PSHAa2983 DEAD-box protein family; putative ATP-dependent RNA helicase with P-loop hydrolase domainchromosome I CDS3170170 1305 - 0.419157
rhlE PSHAb0411 putative ATP-dependent RNA helicase with P-loop hydrolase domain; DEAD-box protein familychromosome II CDS467541 1302 + 0.417051
rho PSHAa0112 transcription termination factor Rho; polarity suppressorchromosome I CDS118846 1260 - 0.402381
ribX PSHAa2375 putative predicted transcriptional regulatorchromosome I CDS2521640 450 - 0.46
rnc PSHAa0732 RNase III, ds RNAchromosome I CDS764585 603 + 0.427861
rnk PSHAa0258 putative regulator of nucleoside diphosphate kinasechromosome I CDS272118 486 - 0.358025
rnr PSHAa2480 RNase R, 3'-5' exoribonucleasechromosome I CDS2630685 2493 - 0.435219
rpoA PSHAa2806 DNA-directed RNA polymerase alpha chain (RNAP alpha subunit) (Transcriptase alpha chain) (RNA polymerase alpha subunit)chromosome I CDS2985382 987 - 0.421479
rpoB PSHAa0222 DNA-directed RNA polymerase beta chain (RNAP beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit)chromosome I CDS228338 4026 + 0.431694
rpoC PSHAa0223 RNA polymerase, beta prime subunitchromosome I CDS232468 4173 + 0.428708
rpoD PSHAa0349 RNA polymerase sigma factor rpoD (Sigma-70)chromosome I CDS361834 1848 - 0.400974
rpoE PSHAa0726 sigma E (sigma 24) factor of RNA polymerase, response to periplasmic stress (TetR/ArcR family) (partial match)chromosome I CDS759014 582 + 0.415808
rpoH PSHAa0357 RNA polymerase sigma-32 factor (Heat shock regulatory protein F33.4)chromosome I CDS371499 864 + 0.434028
rpoN PSHAa2551 sigma N (sigma 54) factor of RNA polymerasechromosome I CDS2699200 1452 + 0.411157
rpoS PSHAa0691 sigma S (sigma 38) factor of RNA polymerase, major sigma factor during stationary phasechromosome I CDS716139 975 + 0.414359
rpoZ PSHAa2791 DNA-directed RNA polymerase omega chain (EC 2.7. 7.6) (RNAP omega subunit) (Transcriptase omega chain) (RNA polymerase omega subunit)chromosome I CDS2969143 276 + 0.427536
rsd PSHAa2900 stationary-phase regulator of sigma D, the major sigma subunit of RNA polymerasechromosome I CDS3070508 471 + 0.390658
rstA PSHAa0853 response regulator (activator) in two-component regulatorychromosome I CDS881216 693 + 0.412698
sigW PSHAb0332 putative RNA polymerase sigma factor (ECF family)chromosome II CDS385384 525 - 0.411429
sigY PSHAb0450 putative RNA polymerase sigma factor, ECF subfamily, response to stresschromosome II CDS510316 540 + 0.374074
spoT PSHAa2793 bifunctional: (p)ppGpp synthetase II; guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolasechromosome I CDS2969547 2109 + 0.406828
srmB PSHAa0510 ATP-dependent RNA helicasechromosome I CDS524696 1227 - 0.414833
srmB PSHAa1432 ATP-dependent RNA helicase, DEAD box familychromosome I CDS1505925 1323 - 0.406652
teiR PSHAa0881 LuxR-type transcription regulator required for testosterone degradationchromosome I CDS910050 1161 + 0.397071
ttk PSHAa2645 putative transcriptional regulator of dUTPase (TetR/AcrR family)chromosome I CDS2796472 588 + 0.401361
tyrR PSHAa2157 Transcriptional regulatory protein tyrRchromosome I CDS2283456 1557 - 0.412974
uhpA PSHAa1591 response regulator (activator) in two-component regulatory system wtih UhpB, regulates uhpT expression (LuxR/UhpA family)chromosome I CDS1657013 630 + 0.385714
umuD PSHAb0537 component of DNA polymerase Vchromosome II CDS602496 414 - 0.463768
ureG PSHAa1762 urease accessory proteinchromosome I CDS1847775 639 + 0.41784
uvrY PSHAa1916 putative regulator in two-component regulatory system with BarA (LuxR/UhpA familiy)chromosome I CDS2025388 651 - 0.410138
yejH PSHAa1985 putative ATP-dependent helicase with nucleoside triP hydrolase domainchromosome I CDS2088155 1671 - 0.399162
yhgF PSHAa2854 conserved protein with nucleic acid-binding protein-like domain (Transcriptional accessory protein)chromosome I CDS3026541 2325 + 0.425806
yoaA PSHAb0497 putative ATP-dependent helicase YoaA with nucleotide triphosphate hydrolase domain, SOS repair, DinG familychromosome II CDS561458 1917 + 0.43036
yqgE PSHAa2600 conserved protein possibly involved in the control of exopolysaccharide productionchromosome I CDS2745916 558 + 0.424731