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2024-04-29 02:10:59

Gene list

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COG category: Transcription
Organism: Lactobacillus sakei subsp. sakei 23K, 23K

Number of genes found: 167

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Lactobacillus sakei subsp. sakei 23K, 23K
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA LSA0513 Putative stress-responsive transcriptional regulatorchromosome CDS531605 237 + 0.42616
NA LSA1639 Putative transcriptional regulator with a sugarisomerase domain, RpiR familychromosome CDS1623677 831 - 0.43201
NA LSA0385 Putative ATP-dependent DNA/RNA helicasechromosome CDS392226 1356 + 0.402655
NA LSA1607 Putative transcriptional regulator, MarR familychromosome CDS1594082 420 - 0.371429
NA LSA1521 Putative transcriptional regulator, TetR familychromosome CDS1495458 558 - 0.419355
NA LSA0241 Putative transcriptional regulator, MarR familychromosome CDS235903 453 - 0.461369
NA LSA0231 Putative transcriptional regulator, MarR familychromosome CDS226281 534 + 0.400749
NA LSA0130 Putative transcriptional regulator, LacI familychromosome CDS122755 1026 + 0.425926
NA LSA0710 Hypothetical proteinchromosome CDS713569 1038 + 0.418112
NA LSA1534 Putative ATP-dependent RNA helicasechromosome CDS1505389 1347 - 0.442465
NA LSA0223 Putative transcriptional regulator, LysR family (N-terminal fragment), degeneratechromosome CDS218880 456 - 0.440789
NA LSA0151 Hypothetical proteinchromosome CDS147688 519 + 0.402698
NA LSA0197 Putative transcriptional regulator, MarR familychromosome CDS190786 543 + 0.360958
NA LSA1313 Putative transcriptional regulator, LysR familychromosome CDS1285831 828 + 0.432367
NA LSA1434 Putative transcriptional regulator, DUF24 family (related to MarR/PadR families)chromosome CDS1405823 375 + 0.410667
NA LSA1384 Two-component system, response regulatorchromosome CDS1352199 687 - 0.419214
NA LSA0669 Putative transcription regulator, TetR familychromosome CDS671315 621 + 0.388084
NA LSA0475 Putative N-acetyltransferase, GNAT familychromosome CDS492343 438 - 0.390411
NA LSA0221 Putative transcriptional regulator, LysR family (C-terminal fragment), degeneratechromosome CDS218448 333 - 0.417417
NA LSA1025 Segregation and condensation protein Bchromosome CDS1014943 624 - 0.424679
NA LSA1403 Hypothetical domainchromosome CDS1369477 474 - 0.413502
NA LSA0286 Putative transcriptional regulator, lytR familychromosome CDS282718 1188 + 0.409933
NA LSA1500 Two-component system, response regulatorchromosome CDS1472666 732 + 0.355191
NA LSA0529 Putative transcriptional regulator, MarR familychromosome CDS548567 456 + 0.379386
NA LSA1503 Hypothetical proteinchromosome CDS1474756 555 + 0.378378
NA LSA1369 Two-component system, response regulatorchromosome CDS1337552 600 - 0.436667
NA LSA1103 Putative N-acetyltransferase, GNAT familychromosome CDS1097022 429 + 0.400932
NA LSA1692 Putative transcriptional regulator, GntR familychromosome CDS1673586 717 - 0.467225
NA LSA1201 Putative transcriptional regulator, GntR familychromosome CDS1182695 714 + 0.413165
NA LSA1868 Putative transcriptional regulator, MerR familychromosome CDS1853308 765 - 0.47451
NA LSA1324 Putative DNA-binding protein, XRE familychromosome CDS1294388 864 - 0.443287
NA LSA0073 Putative transcriptional regulator, RpiR familychromosome CDS69522 747 + 0.334672
NA LSA0426 Putative transcriptional regulator, ArsR familychromosome CDS435366 333 - 0.426426
NA LSA0990 Hypothetical proteinchromosome CDS984071 435 - 0.43908
NA LSA0380 Putative metal(Iron)-dependent transcriptional regulator, DtxR familychromosome CDS386400 663 + 0.425339
NA LSA0269 Putative transcriptional regulator, TetR familychromosome CDS262933 672 - 0.467262
NA LSA0239 Putative transcriptional regulator, MerR familychromosome CDS234885 426 + 0.431925
NA LSA1554 Putative transcriptional regulator, LacI familychromosome CDS1527018 939 + 0.467519
NA LSA0186 Putative transcriptional regulator, LytR familychromosome CDS178687 1014 + 0.40927
NA LSA1874 Putative transcriptional regulator, MarR familychromosome CDS1860439 483 - 0.459627
NA LSA1250 Hypothetical proteinchromosome CDS1229043 303 - 0.382838
NA LSA0597 Hypothetical prophage lsa1 proteinchromosome CDS602654 306 + 0.392157
NA LSA0103 Putative transcriptional regulator, MarR familychromosome CDS99295 483 - 0.401656
NA LSA0288 Putative transcription regulator, GntR familychromosome CDS285590 732 + 0.393443
NA LSA0579 Putative transcriptional regulator, LysR familychromosome CDS588084 873 + 0.442153
NA LSA0219_a Putative DNA-binding protein, XRE familychromosome CDS213407 558 + 0.277778
NA LSA1341 Putative N-acetyltransferase, GNAT familychromosome CDS1312460 528 - 0.450758
NA LSA0421 Putative transcriptional regulator, MerR familychromosome CDS429388 441 + 0.412698
NA LSA0965 Putative transcriptional regulator, TerR familychromosome CDS953839 582 + 0.43299
NA LSA0161 Putative transcriptional regulator, ArsR familychromosome CDS155224 333 - 0.426426
NA LSA0369 Putative N-acetyltransferase, GNAT familychromosome CDS372606 525 + 0.417143
NA LSA0077 Two-component system, response regulatorchromosome CDS72438 714 + 0.389356
NA LSA0204 Putative transcriptional regulator, PadR familychromosome CDS196551 555 + 0.421622
NA LSA0265 Putative transcriptional regulator, PadR familychromosome CDS260348 534 - 0.423221
NA LSA1054 Transcription regulator, tetR familychromosome CDS1048526 582 + 0.434708
NA LSA1587 Putative transcriptional regulator, GntR familychromosome CDS1564019 702 - 0.448718
NA LSA1724 Putative transcriptional regulator, MarR familychromosome CDS1707070 348 - 0.408046
NA LSA0537 Putative transcriptional regulator, DUF24 family (MarR related)chromosome CDS560392 381 + 0.435696
NA LSA1419 Putative transcriptional regulator, GntR familychromosome CDS1387693 387 - 0.413437
NA LSA1215 Two component system, response regulatorchromosome CDS1197788 741 - 0.422402
NA LSA1351 Putative transcritional regulator with aminotransferase domain, GntR familychromosome CDS1320085 1428 - 0.471989
NA LSA0600 Hypothetical prophage lsa1 proteinchromosome CDS603696 342 + 0.394737
NA LSA1038 Hypothetical proteinchromosome CDS1029159 555 - 0.362162
NA LSA1796 Putative transcriptional regulator, AraC familychromosome CDS1784181 864 + 0.355324
NA LSA1509 Hypothetical proteinchromosome CDS1477743 549 + 0.460838
NA LSA1789 Putative transcriptional regulator with a sugar-binding domain, LacI familychromosome CDS1773482 993 - 0.420947
NA LSA0277 Two-component system, response regulatorchromosome CDS272611 687 + 0.419214
NA LSA0558 Putative transcriptional regulator,LytR/AlgR familychromosome CDS574516 453 + 0.430464
NA LSA0500 Two-component system, response regulator (possibly involved in phosphate regulation)chromosome CDS519464 714 + 0.421569
NA LSA1454 Two-component system, response regulatorchromosome CDS1427662 675 + 0.388148
NA LSA1653 Putative transcriptional regulator, MarR familychromosome CDS1637883 441 - 0.390023
NA LSA1612 Hypothetical proteinchromosome CDS1598503 267 - 0.41573
NA LSA1472 Putative N-acetyl transferase, GNAT familychromosome CDS1449323 432 + 0.428241
NA LSA0599 Hypothetical prophage lsa1 proteinchromosome CDS603206 423 + 0.399527
NA LSA0681 Putative transcriptional regulator, ArgR familychromosome CDS679250 453 + 0.390728
NA LSA0123 Putative sugar kinase, ROK familychromosome CDS114450 888 + 0.418919
NA LSA0132 Putative transcriptional regulator, MarR familychromosome CDS124702 459 + 0.348584
NA LSA0147 Putative DNA-repair helicasechromosome CDS142108 1755 + 0.346439
NA LSA1564 Putative N-acetyltransferase, GNAT familychromosome CDS1535857 462 + 0.426407
NA LSA1799 Putative transcriptional regulator, GntR familychromosome CDS1786492 720 + 0.441667
NA LSA1560 Putative N-acetyltransferase, GNAT familychromosome CDS1533229 462 - 0.417749
NA LSA1797 Putative transcriptional regulator, MerR familychromosome CDS1785069 447 - 0.427293
NA LSA0240 Putative N-acetyltransferase, GNAT familychromosome CDS235365 519 - 0.402698
NA LSA0541 Putative DNA-binding protein, XRE familychromosome CDS562708 855 - 0.40117
NA LSA1717 Putative DNA-binding protein, XRE familychromosome CDS1700435 321 - 0.389408
NA LSA0639 Putative transcriptional regulator, PadR familychromosome CDS641762 309 + 0.368932
NA LSA0912 Putative ATP-dependent helicase, DinG familychromosome CDS901422 2835 + 0.432451
NA LSA0972 Putative transcriptional regulator, LysR familychromosome CDS961443 966 - 0.3706
NA LSA0230 Putative transcriptional regulator, MerR family (C-terminal fragment), authentic frameshiftchromosome CDS225886 246 + 0.410569
NA LSA0757 Hypothetical proteinchromosome CDS753486 543 + 0.405157
NA LSA0237 Putative DNA-binding protein, XRE familychromosome CDS233156 756 + 0.382275
NA LSA0216_b Putative transcriptional regulator, MarR family, truncatedchromosome CDS211637 270 + 0.433333
NA LSA0590 Hypothetical prophage lsa1 proteinchromosome CDS598496 192 + 0.401042
NA LSA1822 Hypothetical proteinchromosome CDS1814544 516 - 0.387597
NA LSA1677 Putative DNA-directed RNA polymerase sigma factor, sigma H familychromosome CDS1658326 561 - 0.424242
NA LSA1150 Putative transcriptional regulator, TetR familychromosome CDS1139675 642 - 0.394081
NA LSA1615 Putative ATP-dependent RNA helicasechromosome CDS1600484 1593 - 0.417451
NA LSA0178 Putative transcriptional regulator, MarR familychromosome CDS171157 417 + 0.366906
NA LSA1566 Putative transcription accessory protein, RNA-bindingchromosome CDS1536852 2178 - 0.432507
NA LSA0960 Putative fibronectin/fibrinogene-binding proteinchromosome CDS948613 1716 - 0.421329
NA LSA1107 Hypothetical proteinchromosome CDS1098481 159 + 0.440252
NA LSA0293 Putative DNA-binding protein, XRE familychromosome CDS292531 312 - 0.410256
NA LSA0383 Hypothetical proteinchromosome CDS389902 1323 + 0.440665
NA LSA0935 Putative DNA-binding protein, XRE familychromosome CDS923111 207 - 0.400966
NA LSA0810 Putative transcriptional regulator, MerR familychromosome CDS803677 717 + 0.425384
NA LSA1630 Putative sugar kinase, ROK familychromosome CDS1615819 936 + 0.440171
NA LSA1853 Transcriptional regulator, AsnC/Lrp familychromosome CDS1841562 399 + 0.413534
NA LSA0589 Putative prophage lsa1 DNA-binding protein, XRE familychromosome CDS597576 780 - 0.328205
NA LSA1865 Hypothetical proteinchromosome CDS1851437 540 - 0.453704
NA LSA0217 Putative thiosulfate sulfurtransferase with a ArsR-HTH domain, Rhodanese familychromosome CDS212040 657 + 0.438356
NA LSA1513 Putative transcriptional regulator (involved in exocellular polysaccharide biosynthesis)chromosome CDS1487955 972 - 0.375514
NA LSA1378 Putative transcriptional regulator, DUF24 family (related to the MarR/PadR families)chromosome CDS1347218 357 - 0.417367
NA LSA0939 Putative transcriptional regulator, MarR familychromosome CDS925773 507 + 0.424063
NA LSA1407 Putative transcriptional regulator, MarR familychromosome CDS1374739 492 - 0.371951
NA LSA1650 Hypothetical proteinchromosome CDS1635110 591 + 0.411168
NA LSA0615 Putative transcriptional regulator, ArgR familychromosome CDS617065 471 + 0.420382
NA LSA1349 Putative N-Acetyltransferase, GNAT familychromosome CDS1318784 564 - 0.407801
NA LSA0074 Putative DNA-binding protein, XRE familychromosome CDS70360 570 - 0.377193
NA LSA1192 Putative transcriptional regulator, MerR familychromosome CDS1174712 420 - 0.440476
NA LSA1096 Hypothetical proteinchromosome CDS1092061 159 - 0.477987
NA LSA0229 Putative transcriptional regulator, MerR family (N-terminal fragment), authentic frameshiftchromosome CDS225731 150 + 0.413333
NA LSA0549 Two-component system, response regulatorchromosome CDS568422 606 + 0.448845
NA LSA1095 Putative transcriptional activator, TENA/THI-4 familychromosome CDS1090808 684 - 0.428363
NA LSA0154 Putative DNA-binding protein, XRE familychromosome CDS149540 207 - 0.454106
NA LSA1643 Putative sugar kinase, ROK familychromosome CDS1628215 873 + 0.392898
NA LSA1007 Putative transcriptional regulator, DUF24 family (related to MarR/PadR families)chromosome CDS999306 366 + 0.379781
NA LSA0047 Hypothetical proteinchromosome CDS43574 246 - 0.430894
CcpA LSA0415 CcpA transcriptional regulator (Catabolic control protein A)chromosome CDS422134 1002 + 0.41018
araR LSA1861 Arabinose operon transcriptional regulator, GntR familychromosome CDS1849132 1077 - 0.387187
atkY LSA1461 Negative regulator of copper transport operon, AtkYchromosome CDS1437334 441 - 0.412698
cggR LSA0603 Glycolytic genes regulatorchromosome CDS605626 1038 + 0.457611
citR LSA1221 Citrate catabolism transcriptional regulator, GntR familychromosome CDS1202378 696 - 0.357759
csp1 LSA0768 Similar to cold shock protein, CspA familychromosome CDS764283 201 + 0.38806
csp2 LSA1152_b Similar to cold shock protein, CspA familychromosome CDS1142484 201 - 0.412935
csp3 LSA1561 Similar to cold shock protein, CspA familychromosome CDS1533764 201 - 0.402985
csp4 LSA0946 Similar to cold shock protein, CspA familychromosome CDS933054 207 - 0.42029
ctsR LSA1780 Transcriptional regulator of stress response (CtsR)chromosome CDS1757532 471 - 0.394904
deoR LSA0800 Deoxyribonucleoside synthesis operon transcriptional regulator, GntR familychromosome CDS792003 954 + 0.422432
fruR LSA1048 Fructose operon transcription regulator, DeoR familychromosome CDS1040145 753 + 0.407703
galR LSA0763 Galactose operon transcriptional regulator, LacI familychromosome CDS758268 993 - 0.43001
glk LSA1329 Glucokinasechromosome CDS1298719 972 - 0.425926
glnR LSA1322 Glutamine synthetase transcriptional regulator, MerR familychromosome CDS1293355 372 - 0.435484
gntR LSA0296 Gluconate operon transcriptional regulator, RpiR familychromosome CDS294048 843 - 0.424674
greA LSA1372 Transcription elongation factor GreA (Transcriptcleavage factor GreA)chromosome CDS1341026 474 - 0.394515
hrcA LSA1238 Transcriptional regulator of heat-shock/chaperone geneschromosome CDS1217325 1059 - 0.413598
lexA LSA1275 Transcriptional repressor LexAchromosome CDS1256429 615 + 0.450406
mfd LSA1604 Transcription-repair coupling factor (TRCF)chromosome CDS1588482 3522 - 0.444634
mleR LSA0440 Transcriptional regulator of the malolactic fermentation, LysR familychromosome CDS453963 921 - 0.393051
nusA LSA1251 Transcription elongation protein NusA (Transcription termination-antitermination factor NusA)chromosome CDS1229357 1218 - 0.414614
nusB LSA0675 Ribosomal RNA transcription antitermination protein NusBchromosome CDS674411 429 + 0.386946
nusG LSA1674 Transcription antitermination protein NusGchromosome CDS1657216 549 - 0.393443
parB1 LSA0015 Chromosome partitioning protein, DNA-binding exonucleasechromosome CDS17517 900 + 0.394444
parB2 LSA0017 Chromosome partitioning protein, DNA-binding exonucleasechromosome CDS19185 876 + 0.432648
rbsR LSA0203 Ribose operon transcriptional regulator, LacI familychromosome CDS195385 1023 + 0.432063
recG LSA0699 ATP-dependent DNA helicase, RecGchromosome CDS697657 2043 + 0.455702
relA LSA0737 GTP pyrophosphokinasechromosome CDS732689 2232 + 0.423387
rncS LSA0707 Ribonuclease (RNase III)chromosome CDS707734 693 + 0.438672
rnr LSA1411 Exoribonuclease R, RNase II familychromosome CDS1378741 2355 - 0.403822
rpoA LSA1739 DNA-directed RNA polymerase, alpha subunitchromosome CDS1724000 939 - 0.380192
rpoB LSA1775 DNA-directed RNA polymerase, beta subunitchromosome CDS1747662 3594 - 0.413745
rpoC LSA1774 DNA-directed RNA polymerase, beta prime subunitchromosome CDS1743947 3645 - 0.417284
rpoE LSA1631 DNA-directed RNA polymerase, delta subunitchromosome CDS1616829 609 - 0.390805
rpoZ LSA0686 DNA-directed RNA polymerase, omega subunitchromosome CDS682873 258 + 0.360465
scrK LSA1790 Fructokinasechromosome CDS1774665 903 - 0.393134
scrR LSA1794 Sucrose operon transcriptional regulator, LacI familychromosome CDS1780882 981 + 0.365953
sigA LSA0884 DNA-directed RNA polymerase sigma factor, sigma A (Primary sigma factor)chromosome CDS871347 1110 + 0.414414
sppR LSA0563 Two-component system, response regulator SppR (sakacin P production)chromosome CDS577446 747 + 0.374833