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# Rhodopseudomonas palustris BisB18, BisB18

>RPC_4906 two component transcriptional regulator, winged helix family
MRILVVEDDAMIADGIRAGLTLAGASIDCVATCEDAAAALAANNFSAIVL
DIMLPDGSGIDLLRKLRAGGDTTPVLLLTALDEVGDRISGLDSGADDYLG
KPFDLDELGARLRAIIRRRDGRAATCLEHGAIRLFPADNNATLDGAPVPL
SRREFAVLHALMERPGVLRSRSELEERLYGWGDEVESNAVEVHVHNLRAK
LGRAAIETVRGIGYRMRPL
>RPC_0795 transcriptional regulator, TetR family
MPNIANHPRKLPRQARSLATVGVILDATALLLVDEGYDKTTTNRIAERAG
VSIGSLYQYFPNREAVVAAVAQRVEAETSGPLWQILSDTRGQDLRGELKL
IVSTSINSFAEALPLKRILLQATSMPATAQWSAAVFQNRLTVLRAFFHAH
AGELREGFNSEAASLLIPRMTRSAIDAAILSRPAALVNGELEHELTTMLT
SYLVDDRRTGAWRTPRSNE
>RPC_1157 GntR-like
MTNTTESENAAPERAPAGRSPLAQNVFQALRAQITGGQLRPDQKLPGEHE
LAETYLVSRPIVREALRQLREQRLIYSRRGAGSFVVARPDLGAEQPAVGF
APVETIADIQRCYDFRLTIEPDHAYWAASRWNAEALDEIATALDLMRDAT
VARLHREDADFAFHLAIAQATNNHYYVSSMTALKAHIFVSMKFHGNSVIV
AKERLENVFAEHCGIFEAIRARDSDRARELMRRHLEGSRDRLFEGRMLDL
SL
>RPC_3096 transcriptional regulator, TetR family
MRYSKDHKQETHARIVKKASVRLREKGAHGIGVADLMKEAGLTHGGFYAH
FESREALLVEAFGYAIDRSNARWRRLAAELPPEQRLTAIVDSYLTASHRD
DPGRGCAVPALGAEIARESPKTRKAFAAKLEEMIEMVAEQIVDAPPKLAR
KQAIAAMATMMGTLLLARIAGHGEISDEILSAGREAALHRAPAVKSTVKP
RPARKPAVAPAAD
>RPC_0452 transcriptional regulator, LysR family
MTDLDLRDLAAFVAVARSKNFRRAALESAVSVSSLSQRLRDIEERLGVRL
LHRTTRSVALTEAGEALLARVGPALRDVDAALDQVRGLRGVPAGRLRINA
PAPAVDLVLAPMVTPFLQAYPQIDLEIVAQTSLIDIVAAGFDAGVRYGEH
LAQDMIAISLGPPERFVVVASPHYVAQHGAPKQPQDLLAHRCIRIRFESG
AMPDWEFEQAGRVVRVTPRGPLVAGYSQLAIRAALDGLGFFAAFEGYVRA
DIAAGRLVSVLDDWCEPFPGPFLYYPSRRQPPPALAALIGFVMEWRKKER
RAGL
>RPC_1874 two component transcriptional regulator, winged helix family
MINQTHLVVVDDEPVARESLAAYLEREGFRVTMAEDIRGLRGVLEHQKVD
LVLLDIRLPGQDGLSFLRELRSRSNLPVIFVTGRVDEIDRVLGLELGADD
YVTKPFGHRELLARVRTLLRRTSESYRLEHNNLARHFAGWTLDLSQRCLT
DAHGEDVRLTRGEFDILAALVRRPGQVLSRDALLDESVHRDGAPNDRTVD
VLIARLRRKIETDPAIPRLIITEHGLGYRFVGPVH
>RPC_0788 protein of unknown function DUF179
MDPKSKAPKRDETKGADDASGRRYLDGQLLIAMPVMEDERFARSVIYVCA
HSSEGAMGIIVNRPAGSIDFPELLVQLEIIDKADQIKLPENAETMKVLKG
GPVETGRGFVLHSSDFFIKDATLPIDEGICLTATVDILRAIARGAGPKHA
ILALGYAGWAPGQLETEIQGNGWLHCPADADLIFGGDIEAKYSRALHKIG
IEPGMLSNEAGHA
>RPC_0702 transcriptional regulator, LuxR family
MPGSEFRHFDRALAAIERFQTTTSPRALIDAVRDAAAAYGYRSFVIAAAP
KLACNAFDKRVLLRHWPEAWFGQYLQDNYQDHDPIAAHARQQTRAFCWSD
APWDRSDKKTAAVMDCAAHDYDMRRGFCVPIFGMRGYEAAISFGGPEIDA
SPAATAAMELIAIYAMNQLMTMREPPARRQTTLSPREREVVAWAAVGKTA
WDTARILAISTDTVNKHMASAMRKLDACTKTQAVVESIRRGEIEL
>RPC_1179 two component transcriptional regulator, AraC family
MYNLVIVEDEDLEREALRKILTENFDCIRIVGEARTGAEAVALIDSCDVD
LMLVDINIPIITGLDVIRHLREGHVDTKVVVTTAYDYFEMTREAIHLKVD
EYLLKPVRTQALVSTLETCIQQLGADRKCRVMVARLGELADQNAYQDGVA
LVRRHVEWICTQRDYPCRDVAQNSATALLALIRAKGLRVSAALARQVTEL
RTMSLDDRGLQSVLGVFLGLADLLFDVREEQLDEAGSTVQKAINYIERNL
SKRVTLEDAADYAKISACYLSRMFKKTLDVNFVTYLTTRRMELAKELLAG
TERSITNIAKEFSYNDLNYFCKSFKKEIGVSPSEYRRQAREGQGGAPGVR
MATMAEPRP
>RPC_2338 transcriptional regulator, LysR family
MKERELPLIALRAFAVAARSDSLSAAAAELGVTHGAVSKQVRLLEDWLGQ
QVFTREGRGVALTPYGRVLAEQLSQSFRDIEAACHYVRRRRSKAVLAVEA
PSTFAMYFLMPRLKRFEQANPDLAVWISTRMTGQTPDVSSHDLLITRGSS
ERIGGHSKASTALFEETLTPVCSTALLQNSAIRTPADLLEFPLITSATRP
GHWESWLQKAGLRDHVFEGGHRFDHMFVAMHAVREGFGSIVAPKEFFPGQ
PEWRLTCPFPDLVVKGEKYFAHPTSRADSRYLRRFVDWLKDEIKT
>RPC_0150 phage transcriptional regulator, AlpA
MREPDRIIRLKTVLSRTGLSRSTIYRKITEGTFPAQIRISVNGAGWHESE
INRWIADPVSWRPKHEFDNAR
>RPC_3220 transcriptional regulator, ArsR family
MTTIPPTGIDAEPESAARQGPAHSAELDELMRKAGKASNFLKALSHEHRL
LLLCLLAERERSVSELESLLSMRQSAVSQQLARLRYDGMVDTRRDGKTIY
YRLANDDVRRVIAVIYDIFCGQTTPDTTP
>RPC_3550 transcriptional regulator, XRE family
MPKSLRTPRQRQLQSLLTAARKKNGMTQADLATALDKPQSFVAKYENGER
RIDVVEFIDIATAVGAVPGEILAQIQSVDESAKRTGRRSRKA
>RPC_1605 Cupin 2, conserved barrel
MKRIVLGLLTVALAGGLALAQQAGIKRTPLQKVEFPEGYVTITGIAEIPP
GGSAGRHTHPGVETGYLLEGETDMLIDGQPTQHLKAGDSYAIPAGVVHDA
KVHGDKSAKVIAIYVVDKTKPLASPAP
>RPC_3598 transcriptional regulator, TetR family
MSHPPKSPLPVRKSHGGRPSLQASARLTEHIVDKATALFLRAGFEAVSID
TIAAEAAISKRTFYTRFSGKPDLFTAVVVRFVEKRMAKMDAISAVVGPLR
HQLEAIACEILRIACEPDAIALDRIVTAEVERFPELGRILYDFAVPRAVG
TIEKILNQACADGTLDRIDTHHAAEHFLYAVIVGPMRMVALGVEGRRLSG
GRLKRLRQSIDLFLNGVRSRSD
>RPC_2660 Protein of unknown function DUF193
MRCPSCSSLDTQVKDSRPTEDSAVIRRRRVCMACNFRFTTFERVQLRELT
VIKRNGRRVPFDRDKLVRSVQISLRKRPVEPEKVEKMVSAIVRELESAGE
AEISSEAIGEIVMEHLRKLDDVAYVRFASVYRNFREAKDFEAVLGELSGD
EMARLAALRLK
>RPC_0479 protein of unknown function DUF448
MLAFADPADLDKGPRTARSGTERMCAVSRDVRPIEELIRFVVAPTGEVIP
DLKRKLPGRGLWVTASRRAVAEAARRNLFAKGFKRELRGAATLADDTDAL
LVRGVIEALAMAAKARQVVSGFSKVEAALNQGEAVALVHALDGAADGIRK
LDAVARQNDRFTTESREFPVVTFLTSAELDLALGRSNVIHAALLGGAAGK
TFLSRSQILVKYRLADDSTTANNFTAKTVRARTA
>RPC_4938 response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase
MTALAKQLPAKRRLLLASDRTDRSCELARILGNVAEVETIPTSNLPDAPA
KDLSGVVVDINLRSPETVQLVRRKLLGSAYQPMPRLFVLADLLHHGAMQA
WALGATDTIARPFDPDDILQRIHAAFPRDDDGTVETESKGKALSEGVAAA
HAVMVKIFEKLPAGIPLTLGDVIKAENHILRAIRRTSLREWLSAVGRHHN
ESYRHCLFATGFAVAFAQYLGIREDDQRRLTRAALLYDVGKAFVPPAILD
NPDRLSLGQHGIYCQHPRLGYDALAAQGGFPREMLDVVLHHHEMLDGSGY
PDALHGDQISDLVRVTTLVDTFTTLVARQPKETVHSHAAAFAAMEAMGDA
LDQRLVQAFRPVALGG
>RPC_1679 transcriptional regulator, LysR family
MTLDQLRIFIAVADLQHVTRAASELNLTQSATSSAIAALEQRYAIKLFDR
VGRGIALTQTGRAFLGEARAVVARADAAVQVLNDLAGLKRGTLALAASQT
VANYWLPPRLQAFRKRHPGIAVRVTIANTEQVAAAVHEGRADLGFVEGPV
DDPLLAARRIDGDTLLIVVGTKHPWAGQRRIAPARLTSSGWVLREPGSGT
RAIFEAALRKAGVKPSELRVELELPSNEAVRAAVEAGDCATAISDLVAAP
GLSAGTLHQIKFELPRRAFFVLRHKQHAASRAETALLESFLP
>RPC_2585 transcriptional regulator, AraC family
MSPLPRLFYVTSGLDPANAFATWRAVISPLFEPHPCGPFKKTPTGSAYGI
IIGDLIIAKVAFNAQNFLRDGELIAATPDHLLLHLYVSGGFNGVVTRQPT
TIGPGKVALIDLACPIATRAFASNTVCLIVPRRLLGELPLQSLKPRLDSF
RNDLLAAHMLSLLERSAQLTSADVAATVAETVDFLQRLLAAEPDQSLAQR
GSDETVLTLAEALIRDNLALAELSPDWLALQLEVSRASLYRLFASRGGIM
RYVQERRLLAVQAALSDPLETRRLSRLAADLGFKSEAHFSRAFRGRFEMT
ASAYRKSQLEASSTIKLTNPAVVQQWWMTVSAQAAEPSG
>RPC_4560 transcriptional regulator, LysR family
MYEKFEYLLALGREKHFGRAAQVCGVSQPNLSAAIKQLEIQFGVILVDRG
ARFMGFTPEGERVLDWARSIVGDFRAMTAEIESMKQGYAGNLRIAAIPTS
LPILSRLTASYWERHPGVHVSISSCNSAEILARLENLETDIGITYFDRES
LGRNAEVPLYHERYCLIACRDMPLMDRPTVTWEEVATLPLCLPSTDMQNR
RIYDRIFKEVGVTVQPAMESNDFIVRIAHLRAGRLATVMPRIMAEDWSVP
PELVSIPIVAPEVSALVGLLYPKRDPIPPLTAALIHEARQLVPVLTAMA
>RPC_4617 transcriptional regulator, GntR family
MGDLLSGLIKLSPDSDETLLRQLTQQLRSLITSGRLAPAQRLPSSRDLAQ
SLSVGRNTVSFAIEQLAAEGYLTTSPGRRAVVSIGASLDARKPQRIKTDQ
RTVELRVSPWARSLHNASWPPIYRGRPRAFQPGLADEREFPHDIWARCLR
RAARSARVRGDSSHNSAALRKALQQHLAEHRGVKATPDQIMIVPSAQAGI
ALIAKVMIGTGDLAWIESPGYGGAFAALQSAGAIVAGVPLDEFGMALGER
KDIPRLIFVTPSHQYPTGRLMPAGRRLELLRFAASVGASIVEDDYDSEFH
YEARPVSALQGMGLSTTVLYVGTFSKSMFADIRIGYIIVPERLIEIFELA
QRHMGLSAAIPMQDALAEFIRNGMYLAHVRKMTRLYKERRDQLLKALASE
TGDRLSIEIPAGGMQLLARCGAFARDDQLSARLLEAGVVARPLSSMVFHK
TKAQGLFLGFAAWNDVEIERAARILGRIVR
>RPC_1649 transcriptional regulator, TetR family
MSTLRMTSDLRRELILSAAKRCFARHGFAGTTTKSVAAAASISEGLLFKH
FPSKSALYAEILAEECEAAPAMHGLLGLEPSTQTLVVLVRGMVAHFLHVS
EVPDQEDAQRLRLMMSSQLDDGEFARLLYQKVGALIGPVFTASLDRAVLS
GEASRVGREPLNLFWFAHHTVLMAGLSRLPTTPCLSYDDAIDLERQICEF
ILRGIGLNEAAIAAHMDRDMPVSETRPAPAESA
>RPC_4594 transcriptional regulator, LysR family
MKIRQIRAFLAVAEDLHFRKAAERLGLTQPALTLAIQALEEEIGVPLLQR
DRHDTKLTFAGEVFRGDITEMLASAEQAAERVRRASAGMFNYLKIGFIST
ATTARFMPRLISEFRRIHPQVELGLQNHVNVDLLAMIESAALDVAFIRLP
LVTPHRVEIASVYKERHVLLLPADHPLTQQPSLRVRDLQNAPFIMYSRRN
APGYHDLIMRTLNSNGINPTIAQEVGEMYTLVALVAAGIGIAVAPISARN
YNLPGVVLREASWLPAAEIGLAFRKDDSRPASRLFIDLALRTRRENEAAS
EDEAPTDPSSPAAAALTRRDAAEKE
>RPC_0545 helicase-like
MAFSTSGSASANDRAPGAGVTAVLGPTNTGKTHLAIERMLAHSSGVIGLP
LRLLAREVYNKIVDRAGPDAVALITGEEKIKPPKPRYWVSTVEAMPRDLD
VSFLAVDEIQIAADLERGHVFTDRILHRRGRDETLLLGAATMRPIIERLL
PGASIVTRPRLSQLEFAGDRKITRQPRRTAIVAFSADEVYAIAELIRRQH
GGAAVVLGSLSPRTRNAQVAMYQSGDVDYLVATDAVGMGLNLDVDHVAFA
SDRKYDGYQFRRLNPSEFAQIAGRAGRATRNGTFGTTGRCAPFEPELVNA
LQNHTFDSVKTLQWRNSRLDFSSLGALQVSLSLTPSHEALTRAPIAEDLR
VLDHAARDGEVRDIAHGAAAVERLWDACQIPDYRKIAPAAHAELVTTLFG
YLMRKGRIPDAWFATQIAQADRTDGDIDTLSGRIAQIRTWTFVANRPDWL
ADPEHWQGISRDLENKLSDALHERLTERFVDRRTSVLMRRLRENTMLNTE
IGKTGEVIVEGHVIGRLDGFTFAPDAAEAGSDAKALQAAALKALAGEIES
RAEKLAAAPDDQFVLASDGTVRWTGDAVAKLVAADDALHPRLRIVADDRL
AGAAREAVQTRLELWLKTHVEKLLGPLFDLAKAEDVTGIARGIAFQLIEA
LGVLERSKIAAEMKDLDQASRAVLRKYGVRFGAYHIYLPSLLKPAARSLA
SLLWVQKRDQVDLSALSGAQHLAGSGRTSFPVDKQLDRDAYRTLGYRQCG
ERAVRVDILERLADLIRPALSWRETSPGEKPAGAFDGRGFIVTQAMTSLT
GSAGEDFASILRALGYRMEKKPPLPPAPPKPVVVETAPVEATDPEANPTE
TTVADQAAPDATVAETIVSETSATDAAIADPEHAAAADIGAAVQEAVTEA
PPLDPALTESAGEVPAVAEPTAAPQIAAEVVSPDAEAPAESASAETVSEA
ADTPTSDAPGSEAIATEAVAVLTTAEADPAVVAGSDPALAADAAVAVPEL
VEVWRPGGRADDHRPRHDRNRYRNPDRAAQAGQPASAGEAGEAEQGKGDR
PNRGRRDRKPEFRRPRTDAPVAAAADAPAAEGTPDARPAQAPRPPRDRER
FQGKGGRGKDKFQGGKGGREGREGRDSGDRAPRVFSSSAPRERERVADPN
SPFAKLAALKEQLTANRKD
>RPC_2824 Negative transcriptional regulator
MYTPPRFQPDRAAMLGFAAARGFGTVCGWDGGKPIGAAVPFVIEFSSDGT
PLLTFHVARQNPLTRLGDGRTPWLMAVNGADAYVSADWYASPEQVPTWLY
QSVHLSGPAALMSDRELDQHLDAVTEAFESSLAPKPPWRFAKMAAGRREA
MKQAIMGVMMRVDEVEGSFKLNQHKSDADHLAVTTALARREDCSAQHVAA
QMRAMRPQLFTQTNPTTDAAMAAGESR
>RPC_3483 putative transcriptional regulator, TetR family
MSSDTRSAILTAAERLYAARGFADVTLRDIVAEANVNLAAVNYHFGSKDE
LITELFVSRSLATNRERLNELKAAELAGGGSAPIEEVLRALVGPTLRGCL
GADQQRSDAARFMIRASVEAIAPIRKIRNREIDHLRKFAAAMRRALPGVG
EVEIFWGLHFALAMAHQTIRDGERLQKLSDGRCDLDDIDGVIDRVVDVAA
AALCTAAKTDKPAARRGR
>RPC_2711 transcriptional regulator, LysR family
MDRLDAMRMFVRVVESGSFSQAARDLNVSQPTVSKQLAALELRLGTQLLS
RNSRALAVTPAGQDYYEATVRILQDIDVVEERILEGQAAPSGLVRVTLSP
AFGRMFVIPRLPDFRRRFPNVAIEMEISGRHVDLIEEGMDVAIRIGRLSD
SALVARHIGDMRMITVASAGYLAQHGTPQTVNELRDHQRVSYIYQGDIIG
WGFQVAGRPVTLDGGGAFRTNDAEHVRGAVLAGLGIAHHASWLFTDVVAS
GEVVRILDQHAPPSFPINAVTAAGRRMPSRVRQFIDFLASICAEEPELKV
GDG
>RPC_3737 transcriptional regulator, LysR family
MTARLPSLNGLRAFEAAARHLSFTSAAAELNVTQTAISHQIRRLEEELGI
QLFVRQNRTLALTPQARDYLPGVRAAFNDLRLATDRLLRKDAACVLTIST
LASLAAKWLLPRLSAFQEAHPAIDVRITTSTALVDFRKGDVDAAIRYGRG
QWPGLRADWLMADQLFPVCSPALLQGKKPLRSPQDLAEHSLLYSSGGYDD
DWRLWLTAAGLPADISKQPGLSFDLIFMTVQAAIDGLGVAIGRTSYVEAD
IAKGRLVVPFQIKLPDEWGFYLVSPEARAETPKLSAFRQWLLASIPSQPP
TSKADGDPVSRRDP
>RPC_3393 transcriptional regulator, TetR family
MTTPATPCISGRKQPKQQRSRQLVAGVLVAAGRVLARHGARRFTAARVAE
EAGISVGSLYQYFPNKEAILFRLQADEWQQTGGQLVGILADPSHPPLRRL
RLAVRAFVRSECEEAQMRVALGDAAPLYRDAPEARQLRLAVTKTARAFMR
EALPGVPQAERLVAADVIMMAMAAVGKQLSETGYGSAAIDARARALSEMF
CAYLETIRAKSGKAAKSGKAGKAAKSGKAARPGKAAKSVGVTASGSSSRP
SIKKPRTARSKAS
>RPC_0039 GCN5-related N-acetyltransferase
MPGPDLALISAMSTTLIEVRPAKAADASAVAATHDEAWRSAYQGIIPGAE
LEKLINRRGPHWWDSAIRKGSRVSVLCFGDKVAGYANYGRNRARSLQFEG
EIYELYLRPEFQGLGFGRRLFTAAKRDLVQSGLKSMVIWALSDNEPATEF
YRALGGRMVARSSERFGAKSLDKVAFAWTN
>RPC_1358 transcriptional regulator, TetR family
MTLAAEHLEVDMRERVLVVAERLFREIGYQKTTVADIAKVMRMSPANVYR
FFDSKKAIHEGVARRLMGEVEAAADAIVRRAAPAAQRLRDLLTTIHRMNA
ERYVGDAKLHEMVAIAMEQSWDVCVAHFERITGMIAEVIAEGKAAGEFNA
PDVPLAATCTCTAMIHFFHPQLIAHVDDKPGPTIDQMIDFVLAALAPHRA
STPASSPANQR
>RPC_3223 transcriptional regulator, ArsR family
MRIYATMKMNIDAMEQAADQASELLKALSNRHRLLIICQLVDGERSVGDL
AQLLGLRDSTVSQHLALLRKDGLVAARRDAQTIYYSIASAPARELLTTLY
RVYCPPALNATSPKQSTKTAKKT
>RPC_0633 transcriptional regulator, LysR family
MDLRLLLEFLVLSESLNFTRAARRLNMTQPVLSRHIKFLELHFGAQLLTR
NTHRVDLTDVGRVFAGECAKINAQYEQSLAMIRTCPGVSRHSLSIGILGE
ATRSFLSAFLIGYNDRHPQVAIDCVDGDVDTIMPRVERGESDLGFVIRPR
GAVTPPHLANFTIASDPLCLVINRNHALAVKERVSISDVAQWPMIGLNRQ
ISPMSFEFNSHFFSRHGYEYKTWKECANLETVCFNVEFNDRAVILLPLHR
RYLVGANARLIMFAESDCMFEVEMLWNPENSNPSLKGFLTEFKEFSRTWD
WSSDVCLGNNEGAQVILEGVAVV
>RPC_3567 ParB-like nuclease
MASVQKIKLSPSRDIPFNRLVLSQSNVRRVKAGVSIEQLAESIALRTLLQ
SLSVRAVLDEDGRETGMFEVPAGGRRYRALELLVKQKRMAKTQPVPCVVR
DDGIAEDDSLAENNERVGLHPLDQFRAFKVLHDGGMSEEDIAARHFVTPA
IVKQRLRLASVSPKLHEVYADDGMTLDQLMAFSVTADQARQEQVWDNVSR
SRFDQPYQIRRMLTENSVRASDRRAQFIGLDAYEQAGGVILRDLFEHDDG
GWLQDVALLDRLVMEKLTAEAESIAAGGWKWISVAVDFPYGHTNNLRELG
GTPVELSEEERSTIDALNAEQAKLEADYAEADELPDEVDQRLGEIETALS
ALETRPVIYDPADIARAGVFVSIDSEGKLSVDRGYVRPEDEAPVDAGPEV
ESAAEGRTVDGEEDQPAVQRAIITVGGTPAESDEDEDDVSKPLPDRLVTE
LTAHRTLALRNALASDPAVAFAAVLHNFVLTTFYRFASSSGCLEIAIRTP
TLPAQAPGLNDSVSAKAIEARHDGWKARLPRDEGDLWNTLNGFDTTEQSS
LFAHCASFGVNALYEPASRFNEGRVSAHSVRRRLDAADVLAHHVGLDMVA
AGWTTGVDNYLGRVTKPRILEAVREAKGESSAQLIEHLKKADMAREAERL
LEGTGWLPEPLRLTDAEASAVTGEAEALPEFLAEDDEEQAEADDDQPCVD
VAE
>RPC_3204 transcriptional regulator, AraC family
MPDDPCPGSGHLMLISPERVFYAGLLGRPRRRSIGGFAIYTALQGELRVA
IEGRSTLQGVLAIVPPYIAHSVDSDHPTISSLVIEPETVDPQVFDQLTRR
CTAQADQLAARIRGGYAELRRAQRRNGFTTGEFDTLFFGEALAARGIDGR
IARAIALLNDVSGKALTATRCAAAAKLSPSRFLHLFKEQTGVSFRAFRAW
KRARHLLHFVNAEINLAHLAQDIGYPDSTHFSHSIRRFYGLKPRAIFSGS
RDLAIYRGEPRSASLVDLRPGRA
>RPC_2791 cold-shock DNA-binding domain protein
MGSDGFESKRPGATLAGGVPTVKRAAGEFSSGLDRDHAVDPIGALGDSAN
LVEISGVIKWFDASKGYGFIVPDNGSPDVLLHVTVLRRDGYQTAYEGARI
ICECVQRAKGYQAFRVVSMDESTAIHPAQMLPPRTHVSVTPTSGLERAQV
KWFNRLRGFGFLTCGEGTPDIFVHMETLRRFGMTELRPGQYVLVRFGPGS
KGMMAAEIQPEGGAPGLSSH
>RPC_3635 transcriptional regulator, MarR family
MSSTPAKSTTAASADVVAAIEAEMSWLARGLEAAQRRRAYPLDRAQYLLL
LIVQAHGPQTVMELADRLLLDGSTVTRQIAVMEERGLIERHANPADGRSV
LIRETALGARDAAKMRQMRLQRMQKLFKGWSDAERDAFATLLAKFNTALT
ASLRAEDN
>RPC_2324 transcriptional regulator, LysR family
MSDALTLDQIQLLLAVVDHGSFSGAARKLNRAQSAVTYGIQKLEAQLGVA
LFDRSSYRPSLTEAGRALLPRARRIVDETAALRDQAQGLAGGLEAELTLV
IDAMFPMPRLVEALRAFTAKFPTVPPRIYVQSMGAGTEFVLNGTCMIGLL
SMVFSDTAGLQHVPLLTVQLLPVVAQDHPLAQLDGPIPTDVIRRHLQLVL
TDRSALTEGRDYGVLSSQTWRVADLGTKHAMLLAGLGWGSMPTHLVADDV
RDGRLKVIHPAEFDARTAHLVMGAAHLASRPLGPAALWMMRHFFETAAEE
AGGATQ
>RPC_3836 GreA/GreB family elongation factor
MIEKVPMTAGGYAALEVELKQRQSVDRPRIIEHIAEARSHGDLSENAEYH
AAKEEQSHNEGRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTE
KKAVWQIVGEPEADAKKGRISITSPLARALIGKKKGASVEVVAPGGAKAY
EITKVEWR
>RPC_4364 transcriptional regulator, MarR family with Acetyltransferase activity
MRDAVSDPEVAAVRAFNRFYTRKLGVLDQHLLQSPYSLAEARVLYELAQR
DDVAAKQIGAELGLDAGYLSRIIQNFHHNGLISRAALPTDKRQHRLALTA
KGRAAFAKLDRASQAEVAALLAQLPRGAAERLVAAMQSIERLLQPAATSP
LATLRGPRPGDIGFVVQSHATLYAADYGFDASFEALVAEIAGKFLASYDA
ARERCWIAELDGEPVGSVLLVRDSDAVAKLRLLLVTPQGRGQHLGQRLVD
EATGFARHCGYRTISLWTQSNLTAARNIYQQAGFELVETKPHRSFGQDLI
GETWELQL
>RPC_1936 transcriptional regulator, ArsR family
MDAITVLSALAEPTRLQALRLVWDGREHCVCELMQRLGATQSRMSRHMAV
LKAAGLVVDRRDAQWVRYRRAQHLPRALIKLVDAALALPTARERQVA
>RPC_2833 DEAD/DEAH box helicase-like
MPNNRGSMSFTHLGLSDKVLAAVAATGYTTPTPIQDQAIPHVLARRDVLG
IAQTGTGKTAAFVLPMLTLLEKGRARARMPRTLILEPTRELAAQVKEQFD
KYGAGQKLNVALLIGGVSFGDQDIKLTRGVDVLIATPGRLLDHTERGGLL
LTGVELLVIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPNEIRR
ITETFLHNPVKIEVSKPASTAVTVTQSQVATGREPHEKRETLRRLLRDAK
DLQNAIIFCNRKREVALLAKSLEKHGFSVGALHGDMEQSARTAALDQFRK
GELPILVASDVAARGLDIPEVSHVINFDVPHHPDDYVHRIGRTGRAGRAG
TAISIVCPSDTKSIAAIEKLIGQDIPKADLGVSDFVEASVEEAPARRSRS
SRKSSESRGREERSSEPRAQEQEERKPRRERSRGGQDRPERSHEPRRNDE
AVKPFVPPVPLPPSQTPSIGRTPAPRPSREPDLEPADHSHLPAFLLRPVR
ARG
>RPC_4758 transcriptional regulator, TetR family
MSWRKEPRRPERGYHHGNLKEALLQAALGLIAEKGPGGFTFADAARMAGV
SPAAPYRHFRDRDELLSSVAQRGFEQFEAVLTAAWDDGRPDTVSAFERVG
KAYLAFARNEPAFYSAMFESGVPVDLNPTLMAASERAFGVIRAAAERLAA
LTPPGVPRPPALMMALHIWSLAHGVASLFGRGDAARRKLPMTPEDLLEAG
VLIYLRGLGFSPEIGAAQPKPQDDDKPAGPWGKPAR
>RPC_1537 putative transcriptional regulator, TetR family
MGKPAKTAKASKPATLRAAPRPRKPGAKPGAKRAAKPTQAATPYHHGALR
DALLAAAETLLQRDGLAGLTLRAVAREAGVSHAAPTHHFGDLAGLVSDLA
AIGFQRFNAAMAAAGAGDGAPLEKALRRALAYLAYARAHPAMYLLMFRTE
RLDMRRPALREAAEAAFAGLTGAIGIAPQHRSGDPAAPQALSLEQAAEVV
RAWSLVHGYTTLLLDGRLAELMSLLPEGSDPETLFVAMLKSTVRPPL
>RPC_1083 transcriptional regulator, LytR/AlgR family
MIRALIVDDEPPALGELRVLLNEAGDIDIVGEAGNAVEAIAAINRLQPEV
VFLDIQMPRISGLEMLAMLDPAHAPRIVFLTAHDDYAVQAFEENAFDYLL
KPVDPLRLGKTLQRLQRDRAPQDVGSLKSAHPLRQIPCAGQNRISLLRVE
DVEYVASRASGVFVVGEDGKERFTELSLRTLEERTSMFQCHRQYLVNLDR
IKELRFEEGGLGHILTLAGRSVPVSRRFLSVLKEKLGIG
>RPC_4383 transcriptional regulator, IclR family
MSMETVNDRTVAPEERSAAPALTKGFAILDLIAQEPGIGFAAIRSRLGLP
NSSCHHLISTLCKVGALQLQADRGYVLGLRLFELGTIAASQRKIEQSALP
ALKRLAQEVELTCHLGVMEGTEAVYLMKVEGLREIRVNTWIGKRLSLHSS
SLGKVLLAWLSPGEIEDKLRNATWEAKTPSTITDPAKFRALLKAVRARGW
AFDDEEDAPSIRCVAAPVFDMKGRIIAAISAVGTVLDIEPERFPVLAEKL
CATAAEISANLGYGQVERL
>RPC_0152 conserved hypothetical protein
MADDTLTATGIGNHGATRLPSVEVDSYNIELKDDEGFLGDRASRGAFQKI
LDGWRKPLRKNGDDPFGKKSTEDINKHELDAILTGDDVGAVAVVHSAIEE
FAQELAYVTRRFMKTKAWAGTECIVVGGGFRQSRLGELAIARTDIILKSE
GIAVDLVPIRYHPDEAGLIGCLHLAPSWIFEAHDSILAVDIGGSNIRCGV
VETRWKKAPDLSKAVVWKSELWRHAEEEPTREGAVKRLVKMLKDLIGAAE
AEGFRLAPFIGISCPGVINADGSIEKGAQNLPGNWESSRFHLPTSLIEGI
PVIGDHDTAVLMHNDGVAQGLSEVPFMQQFERWGVLTIGTGLGNARFTNR
KPKVKKDKDVEKAKEKDKEADKGKSKDNEKDKDKEKKDKKDKD
>RPC_2608 DEAD/DEAH box helicase-like
MRPPLLNPLFAPVTSLPGVGPKQDKLFRYLLDRSETPRLVDLLLHLPVSV
IDRRARPKIRDAVPGSMVTLEVTVDRHRPAPGGRSRAPHLVYASDDTGDV
VLTYFRAQPGYVEKLLPVGEKRYVSGTAQMFDGTLQIVHPDRVVDEAGLA
LLSGIDPVYPLTEGLAVGSLRRAVAQALLKLPTLPEWTAPEVMRRCGFAP
FAEALQRVHRPVELTDILPDGPFWSRLAYDELLAGQLALALVRAQLRRPA
GTRNAGDGGLRAKIIDALPYALTASQQAAAAAIAEDLRQPVRMLRLLQGD
VGSGKTVVALLAAAAVAEVGKQAALMAPTEILARQHFKTVAPLAAQAGLR
VAILTGREKGKERREILAALASGEIHCLVGTHALIQDDVVFNDLALAVVD
EQHRFGVRERLALTNKGAAVDVLVLSATPIPRTLVLSYFGDMDLSELREK
PAGRQPIDTRAVPNSRLNEVMDAVGRALAAGKLVYWICPLVEESETVHLT
DAEQRFESLKFRYGDRVGLVHGKMRGPDKDRVMAQFAAHEIGLLVATTVV
EVGVDVPDATIMVIENAERFGLAQLHQLRGRIGRGSESSTCLLLYKEPLG
EMSAARLRVIRETTDGFRIAEEDLKLRGEGDVLGTRQSGLPGYRIARPEV
HAQLISQARDEALQILKDNPKLKGERGEALRCLLYLFERDEALPLIGAG
>RPC_3527 transcriptional regulator, LysR family
MRRRLFSLVKARPAGAATQPALGLRVPLVALLQALSVAEHLNFRHAANAL
GVSQSSVSTRIKQLEQDLGVQLFERRHRGVRLTEAGQHFLEHVATGIEHL
DHAVRTAGAIARGERGRLRIGLYSSIFAGYLAELLGQFRGHYPTVDLQIM
EGRARDTIRAVREARLDVAFVVGAPKVSDCHSKPLWTEALFVALPEHHAL
AEAEGVTWPALSGECFLARSGGPGPQVHDHIVLRLAGHWCQPRIQRFDVE
RDTLMSMVAQGYGITLTSEAAAQVPFPGVAFRPILDETELITFSALWSPH
NRCQALLHLLALAQQKSEGRLLGI
>RPC_2635 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
MAHWSRNSRQMEAAGGTVAVLKPAAVKPARPRSRMMRQYDLVERVRSYNP
DTDEDLLNRAYVYAMMAHGEQTRASGDPYFSHPLEVAAILTHLKLDDATI
VAALLHDTIEDTEATRTEIDNIFGHEIGALVEGLTKLKRLELVSREAKQA
ENLRKLLLAVSNDVRVLLIKLADRLHNMRTLEFVPPASRQRIAEETLDIY
APLAGRMGMQEMREELEDLSFQSLDPDAFAVVMQRLDSLAERNRNLIGEI
ETQLSANLAKNGLSAEVTGRRKRPFSIWTKMERKSVGFEQLSDIYGFRVV
LKDVEACYRALGVVHTTWPVVPGRFKDYISTPKQNDYKSIHTTVIGPGQQ
RVELQIRTEEMDQIAEIGIAAHSFYKDGVGSPTEMLKRESNAFAWLRHTI
EVLSESANPEEFLEHTKLELFHDQVFCFTPKGKLIALPRAANVIDFAYAV
HTDVGNSAVGCKINGKFAPLSSELQNGDEVEVLTSAAQEAPPSAWESLAV
TGKARAAIRRATRTAVRDQYAGLGRRIVERLFVRAKIDYADDKLKGALPR
LARPSIDEVMASVGRGELRASDVARAMYPDYKEERLGRFAGKRDPADVTK
LKAPGSAARVTSVIPIRGLNSDLPVKFAPNGGAVPGDRIVGIVSPGEGIT
IYPIQSPALKDFEEEPERWLDVKWDVDETTPQRFPARLFVQNVNEPGSLA
QIATVIAEHDGNIDNINMSRRSPDFTELTIDLEVYDLKHLSAIIAQLRAK
AVVAKVERVNG
>RPC_3920 ParB-like nuclease
MASVHKIKLSPSRDIPFNKLVLSQSNVRLIKAGVSIEQLAESIALRTLLQ
SLSVRAVIDADGQETGMFEVPAGGRRYRALELLVKQKRMAKTQPVPCVVR
DDGIAEDDSLAENDERVGLHPLDQFRAFKTLHEGGMSEEDIAARHFVSPA
IVKQRLRLASVSPKLHEVYADDGMTLEQLMAFSVTADQARQEQVWDNVSR
SQLDQPYQIRRMLTENSVRASDRRAQFIGLDAYQQSGGTVLRDLFEHDDG
GWLQDVALLDRLVTEKLKVEAETIAAEGWRWISVAVDFPYGHTNNLRELD
GVTTELSEDEQTAIGALNAEQAKLEADCAEADELPDEVDQRLGEIEMALS
AFETRPVIYDPADIARAGVFISIDGEGALSVDRGYVRPEDEAPVNVDPEV
ESAAHGGTLDGEQNQPVVQRAVITVGGGPAESDDDEDDVIKPLPDRLITE
LTAHRTLALRNALANDPAIAFSAVLHNFVLATFYRFASSSSCLEIAVRTP
TLPVQAPGLNDSVSAKAIEARHDGWKARLPRDEGDLWNMLTALDTAEQSS
LFAHCASFGVNALYEPANRFNDGRVSAHGVRRRLDHADVLARTVGLDMVA
AGWTTGVDNYLGRVTKPRILEAVREAKGESSAQLIDHLKKGDMAREAERL
LEGSAWLPEPLRLPDAEAAAVTGEAEALPDFLADDDEEQAEADEDQPRVI
AAE
>RPC_2537 putative transcriptional regulator
MKTAPYDTAEFLTSPEAMRAYMAEALETNDAAFIAHALGTVARAKSMTDI
ARKTGLSRESLYRALSAAGRPELATVMKVLGALDLQLSIKNARPAVKAMK
VVKVARGAKVGKLSKPRAGTIAKAKVTAIAKQRTAKMPAHPGARQGGSKR
RQLAQA
>RPC_2019 transcriptional regulator, GntR family
MHLLRYGTQYKMAVNLNNDTVSILHSALREGMGPKYRRLARRLEALILSR
GLRTGEKLPAHRDLAALLGVTAGTISRAYGELRKIGLISSRVGDGTFVLE
LAKKKRKETDFKPYGGGEPGRYDLSRNTAIPGRMLTSVSETLRRLALQPE
ALEELLQYGPELGLNRHRAAGARWLSNHHSDANAEQIVCVNGGQHGLFCV
LMALLERGDTLVSEQFTYPGLISACRILGINLVGLKMDDEGLIPKSLDAV
CRTATVRALFCTPTLQNPTTAVLGLERRAEIARLCRAHNLLVIEDDAHGV
LVKDRHPHIGHFVPERSILISSLSKAIAAGLRVGYVHAPLPLVGRIGTMV
RTNCWMANPLAFEMVSLWIEDGSALRFLEDQIEEIVRRKTLVQPLLDGFV
VKTHPRSPHFWIEVPSPWRASEIASELRQKNCLVAPAEAFAVDRDRTVQF
LRASVSSAEKTDAAISEGFRILSAVLRNPSTTTAIH
>RPC_4425 transcriptional regulator, DeoR family
MSMRSKERHARLLEALNAGEIDIDDLARRFEVSASTVRRDLQQLSKINAV
RRTYGGAILTGHAIETTFEQRLAVDGDAKQAIARAAIELIEDGDTLILDA
GSTVAAFSRLLLQRRLRIITNNLALLPFLAKAPAIELVVLGGALRSTSMS
TMGPLANEALRRLSATRAIMSADGVVGGRGLCEADLEQVALKSLMMQQAK
ELIVLADASKLGRAEQLAWAPLPPRWTLVTDAGASEQQRQRLADAGARVI
VAQGCVAA
>RPC_1023 transcriptional regulator, BadM/Rrf2 family
MKLQKSTMCGLYAVLELAAHADQQISAGDIAEKYAISLNHLAKVLRALVR
ARLIESVRGPGGGYRFSGNPKRVTLLDIITLFEDTAPDLEQAASDDHEES
RALHKMLRDIDGIAMTTLRSISITSLLKVIETERRKSERTSHGQSVRLSS
AGRA
>RPC_4311 two component transcriptional regulator, winged helix family
MRILLIEDDTRLARQIAEALERAGYTVDRSADGEDGWFMGDSGVYDAAIL
DLGLPGLDGLSVLRRWRDAKRAMPVLILTARASWREKVTGLREGADDYLT
KPFEIEELLARIEALIRRASGHATAEISVAGLRLDPSTQRISRDGAPLDL
TALEYRALAYLMMHPAKVVSKTELTEHIYGQDDDRDSNVIEVLVNRLRKK
IGADAIRTRRGQGYQLADVTP
>RPC_2454 SOS-response transcriptional repressor, LexA
MLTRKQYELLRFINERLKEAGVPPSFDEMKDALDLRSKSGIHRLITALEE
RGFIRRLPNRARAIEVIKLPELGVNPGGGNGRRGFTPSVIEGNLGRVRPA
ASLGGDDDSGRTVAVPVMGRIAAGTPIEALQTRSHTISMPADMLGSGEHY
ALEVRGDSMVDAGILDGDMALIQKNDSADTGDIVVALIDEEEATLKRFRR
RGASIALEPANAAYEVRILPPNRVRIQGKLIGLYRKY
>RPC_4559 hydrogenase accessory protein HypB
MCTTCGCGGTEATIEGADAHGHAHHHPHDHDHAHDHDHHDHDHAHGHGGE
HGHAHDHAHDGHHHDHHHHHDHAASVAPPAPGAVSSRTIVLERDILAEND
RLAARNRARFAEAGVLALNLVSSPGSGKTTLLTRTIAALAGSVPVGVIEG
DQQTSNDADRIRAAGAPAVQINTGKGCHLDAHMVGHACDQLELARGGVLF
IENVGNLVCPAAFDLGEAAKVAIVSVTEGDDKPLKYPDMFAAARLVLVNK
IDLLPYVDSDIAVLTANARRVNPAVEVLVLSARSGEGMDAWIAWLKSRLA
T
>RPC_4228 sigma-24 (FecI-like)
MLTPAELVWLLAAVSKGDELAFERLYAATRAKLFGVVLRILRRQDLAEEV
IQEAYVKIWKSAGQFNPAVASPITWMVSIARNRAIDVVRKRGEVSIEEEP
AALDVAADTPDPLARREMTEELKRLLECVGRLEPDRQKLVLLAYYNGWSR
DQLAAKFETPVNTVKTWLRRSLLDVRECLGLA
>RPC_3996 transcriptional regulator, IclR family
MAKESDGFVRAIARGFSVVEALGRPPGRHTLSEAAVSAGLNRATARRMLA
TLVALNYCEVEGRYFSLRPRALGLGLSYLNALPYWGYAQSALEDLRNEIG
ESCALAVLDEDEIVYALRLPARRILSANLGIGSRLPAHVVSLGRVLLASL
PPDKLQAYLTRAELRKLTPRTIVDPVALAEQLQRTREQGYAWIDGELDPA
ICGIAVPVRDHRGAVVAAVSINTISGSIDEDGAKQRFLTALRRTAQDIQS
QTAAAA
>RPC_4648 transcriptional regulator, LysR family
MIDKLELLLALAKERHFGRAAESCGVTQPTMSTSLKQLEEILGVMLVQRG
SRFQGFTPEGERTLDWARRIVGDVRSMRQEIKTLKDGLSGEIRIAAIPTV
LGMVAALTTPFRARHPDVKFRIVSCTSAEVLGLLENLEVDAGLTYIENEP
LGKVRSVPLYHESYRLLTSPDGLFGDRDEVTWREVGQVPLCLLTPDMQNR
RIIDRALKAVGTEAKPTLTSNSIIVLYTHVKTGRWASVMPAKLAETLGFS
DAVRSIPIVDPVVSYSIGLVVPPREPLTPLIAALVQVAREVAPTLES
>RPC_4666 transcriptional regulator, TetR family
MRRETGSRTKPLTRDRILEAAIARFSRHSYEATGLRDIAADVGVDVAYVH
RCFGSKERLFAAAVQAAIKPERFLAGPGDDLAATLSQQALANQASQGPDQ
TGPLDIVIHSLSSPEASRVLRAVMLKDFIEPIAGRLGSPAASRAALIAAL
LAGVGILRSVLGVAALQEAEGGELQTLIRTAIDSMIDAETASQCDATRAG
>RPC_1378 transcriptional regulator, XRE family
MAGDSGKKLFVGPRFRRIRQQLGLSQTQMAEGLGISPSYINLIERNQRPV
TAQILLRLAETYDLDLRDLATADEDRFFAELNEIFSDPLFRQIDLPKQEL
RDLAELCPGVTHSLQRLYAAYTEARRGETLAAQMADREEGTRFEANPIER
VRDLIEANRNYFPEIEQAAENLRDELNVPAQDLFVSLSERLREQHSIVTR
IMPVEVMRETLRRFDRHRRQLLISELIDGPGRAFQIAFQIGITEFGKTFD
AIVNRAGAVDDTARRLYRITLANYFAASVMMPYGAFHAAAETLNYDVHVL
AQRFNAGFEQVCHRLTTLQRPNARGVPFFLLRVDNAGNVSKRFSSGTFPF
SKFGGTCPLWTVHSTFDTPDRLLKQVIELPDGSRYFSIAQMVRRPVMPHP
QPQPRFAIGLGCEIRHAAKLVYAAGMDLDKEEATPIGVNCRLCEREHCSQ
RAEPPITRSLILDENTRRASSFAFSNAREL
>RPC_0684 transcriptional regulator, TetR family
MARPRATNYDDKRRAILERSAELFSEYGYDRASMNKIAEACGVSKANLYH
YYKDKDELLFDVIRSHLEALLAVVKAAQRPELPPDDQLRELVAALLEAYR
DADAQHNVQISSLRFLSPPRQTALKNVERELVRTFSDAVAAVAPQLKGTA
LLKPVTMSLFGMVNWHYLWFSDGGAVSRADYAELVTRLIADGSRDLLARA
PAPPTKRAAERRR
>RPC_1978 sigma-24 (FecI-like)
MLAVLNNVFLHHRKSLMWSAMRIVRDAQAAEDVAHETYLRARKAIEAGPI
DHIEAFLHQTARNLAIDHLRRKKLRGSFERNDHPDTTVMNVPANVPSPED
ALIQRERLKLLDQALAQLPKRAQSVWILSRVRKWPYPRIAEHLGVSQNTV
FNDLKLAVGHCHDALARIDRR
>RPC_0548 transcriptional regulator, CarD family
MSRTRSRPLLCIRSPAQTSNRGVAVHAQAVSQKTRKKSVSKGVKKAAAAS
RSATKTRSRTAARAAAKDSKKASAKASKSSNSSSSSSSSSNSKASAAKSS
KNKRSAMPKTTAKTTVKPTAAAPKAAPKAAAKPAVAKPPVVASKQPVAAA
AKPAAKPAAAAPRVEEAKKPLTQRQGFKTNEFVVYPAHGVGQILAIEEQE
IAGAKLELFVINFMKDKMTLRVPTAKVANVGMRKLSEPALVKRALETLKG
RARVKRTMWSRRAQEYEAKINSGDIVAIAEVVRDLYRSDSQPEQSYSERQ
LYEAALDRLSREIAVVQHVTETEAVKEVEGQLAKSPRRGAKTEVEADADA
EAETDGDDVAADEAA
>RPC_1206 GreA/GreB family elongation factor
MSRAFVKEQDIETFQELPDRPISPHSNDVTPEGMAQIEQAFDASREALAA
AQAADDQDAITAAARELRYWSARRATARIARPIGDVTKVRFGSTVTIRRN
DDRRQTFRIVGEDEADPPNGTISHVLPLARSLFGKRVGDVVRAGTGEAEI
EEVG
>RPC_1386 two component transcriptional regulator, winged helix family
MTQFATLAKRPPCPADDAPHLLLVDDDRRIRDLLSRFLASEGYRVTTAKS
AADARSKLNGLYFDLLILDVMMPGETGFDLARFIRTTSSVPIVMLTARHE
AESRIEGLQLGADDYVAKPFEPRELLLRIGNILKRAMPVAAVKQESISFG
PYVYHLERGELRQGEEIIHLTDRERDMLRVLAASPGETVPRGELTGGGGT
VNERAVDVQINRLRRKIEQDPANPLFLQAVRGIGYRLVAAP
>RPC_0978 GCN5-related N-acetyltransferase
MAERLRLTRDNCPSHPSFTDQAVIRRSFGYGTVFLLTPDDGAACGCVGVR
RPKDGICALEKLAVLPSARRHGLGRALVEAAAVVAADWGATQLEASIIAS
ERDLARWYQSLGFVPLRTARFPQLPFEVKSCQEGRLTLVAAGFFVVRRPT
VAPPGTTPPITWRRRTRSPCCQASTNC
>RPC_4054 response regulator receiver domain protein (CheY-like)
MASAATIVYVVDDDFGVLGSLRFLLETDGFEVRTFRNGAALLDAVAENKV
DCIVIDYKMPTMNGIDLAKKLRARRIEAPIVLITGYPDESISARAAASGV
YHVVLKPHLEESLVNHIRGAMQESQAPNAGSGRDLR
>RPC_3703 DEAD/DEAH box helicase-like
MERTNLLTSFQDFGLAEAITRALKEENYLTPTPIQAQTIPLAMAGRDVVG
IAQTGTGKTASFALPIIHRLLENRIKPQPKTCRVLVLSPTRELSGQILES
FNAYGRHVRLTSALAIGGVPMGRQVRSIMPGLDVLVATPGRLLDLVQTNA
LKLNQVEFLVLDEADRMLDMGFINDIRKIVAKLPIKRQTLFFSATMPKDI
ADLADQMLRDPARVAVTPVASTVERITQRIIQVDHSAKPTLLAQILKQEN
VNRALIFTRTKHGADKVVKGLARAGITADAIHGNKSQNHRERVLAAFRAG
EIRTLVATDIAARGIDVDGITHVVNFDLPNIPETYVHRIGRTARAGAEGI
AISLVAGEEMAFLRDIEKLIRITLPREDRRTPGHRDTVAKVSQHRGAHAA
PHVHSPRSNEVAPSSNGPRRRRRPTGGTIAAPVARHEPSRHEPTARPQPQ
AAAKEGIQGVAFLHRESRPGTQPNRKQRPQR
>RPC_4095 GCN5-related N-acetyltransferase
MTAKLDPGGCVVRLGPADADRYAEHLMRLDQAARRMRFFDDVPDFQVMLH
AGAALADGRVVIGYLADGQIRGGCELLLGDPQQHSAEAAFSVETDYRRQG
IGGKLMAAMIAEAHRLGIRRIEMSCLKSNLPMQALAARFTSDLRQDGETT
LAVLDNGGAARPG
>RPC_2069 transcriptional regulator, TetR family
MSIPSDRRSRKRLATREGISDAATRLFIERGFDHVTVDDIAAAADVGRMT
VFNHFPRKEDMFFDRDEEGRQMLREALLQRDPGVGLIEAYGLLAHRLIAE
HSPVVEFSARSQSFIEAIEASETLKARARAIRDEFAQVVALALSECAGRE
PSDPDAQLAAGLLLAVWTVAFIEAHRTFRQTHDTKRANAAFLALVDKGGR
ALKAAMAGTPYA
>RPC_2195 transcriptional regulator, TetR family
MPHLSTNVSHRLPASKNTTADRLLVAAGELMTERNSIDVSLHDIAVKAGV
NAALVKYHFGNKDGLMLALLERDAVTEMANLEYLLAQPISPAAKMRLHIA
GIIKTYHQFPYMNRLIHYMLHESSAEAADEVSKFFVGPLLDFQRRLLAQG
VAAGQFRNVDPVLFYTSLVGACDHLFFSRHSITRATGVGPITDQVCRDYI
VHMETLILDGLLGSPRGAVS
>RPC_3575 transcriptional regulator, TetR family
MTPKGGKSSQKILESAFKCIALRGCNNVTLREIADEAGVALSQLHYYYKN
KDGLFNEVLKGMRERYSDGLAAKLSKSATRAAKIRDIIDYNRELLRNQTD
LYRNFLEFFNIAMRSDEFGCDVNQFIEDIAAAISVHLSADLADAATSRRS
ENDALARMILASSFGIAMQYLLNRESANILAGFDILAASLDPARRHPEPA
>RPC_0757 putative phage repressor
MLTHDQIWTALDRLAERAGLSPSGLAKRSGLDPTTFNKSKRITNDGRERW
PSTESVAKALAATNTAIDAFVQLIGDGPRAVQSVPLLGLAQAGSGGYFDD
GGFPVGKGWDEVGLPSVNDEHAYALEISGDSMKPAYRAGDVIVVSPGSPI
RRGDRVVVKTRDGEVMVKELKRRTAKTLELLSLNPSHPDRTLAPAEVEWI
ARIVWASQ
>RPC_1071 transcriptional regulator, GntR family
MWAGQPFAAGSRDLRTRWAIVANLLTQRIVGGEYPVGTVMPNEVDLAEQL
GVSRSTVRAALGELQQAGMISRRRNAGTRVESVRPLRGPGSYNQTLATIE
DVAQYGAQTDRHVQEIATEIADSKLATLLDCAPGEAWLRVSSLRSSPIAS
SPPLCWTDVYVAPMFAAIVRQRVADYPGLISTLIEDFAGHPTAEIHQTIT
AIGVPKRLVTALEAKQGAHALEITRRYLDAKDRVFIVSRSIHPADRFSYD
SRLKRQSAPSGVYPLSAKPKRLAG
>RPC_3424 DNA-directed RNA polymerase, alpha subunit
MTIQKNWQELIRPNKLVVTPGSDPTRFATLVAEPLERGFGQTLGNALRRV
LLSSLQGAAVQSVHIDGVLHEFSSIAGVREDVTDIVLNIKDISIKMQGEG
PKRMVVKKQGPGTVTAGDIQTVGDVVVLNPDLQICTLDEGAEIRMEFTVA
GGKGYVAAERNRPEDAPIGLIPVDSLFSPVRKVSYKVENTREGQILDYDK
LTMTIETNGAISPDDAVAYAARILQDQLNVFVNFEEPRKEVTQEIIPDLA
FNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRK
SLNEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY
>RPC_2257 transcriptional regulator, TetR family
MRKTREQSRLETRERLIASAHAAIRRDGIGGLSLRRLCEEAGYSQGAFYS
NFASRDDLLLALMERHVLAEVETLRRLVQVTHGKVLDDVLATVAARLADL
AKQTEWSLLAIELQLHAQRDADFADAYNAAKISYHAEFALLVDEILRRHK
LLPALPPLQIAIGLYALWSGLAVQGTVPGAGPRDEIFLAFLRAIIGGSPS
NR
>RPC_4654 two component transcriptional regulator, winged helix family
MVAIPNILVVEDDRETRALIAKYLRANGCHVTAAADGHEMHKVMADRRVD
LMIMDVMLPDEDGLSLCRKVRAKSQLPIIMLTARGEDVDRIVGLEMGADD
YMVKPFNPRELLARINAVLRRQASALNASSAATAAATAFAFDGWRIDFRL
RELRNPAGARVALTSAEFDLLRAFCERAGRVLSREVLLDLTQGRNSGSFD
RSIDVLVSRIRRKIEIDPQDAMLIKTIRSGGYMFTPVVEPLLAAPTAEP
>RPC_1321 putative photosynthetic complex assembly protein
MDDAAHDLKIPKGALVAAGLLVVFALVAATVSRVTGVGRVQMTPPAIVES
LSLQFEDGQDGSVLVYNAADHQLLDSLPPGSNGFVRVVMRGMARERRLAD
VGRQPPFQLARHVNGQLTLTDTANNKQIDLNAFGSSNLAAFARLMEKKEG
SK
>RPC_3592 transcriptional regulator, MarR family
MAKQSDHPLRLDRQVCFLLYASSNLVTRLYRRVLAKLGLSYPQYLVMLVL
WDSPSQSVGDLGAKLYLDSGTLTPLLKRMETAGLLTRRRDAEDERRVLVE
LTDAGRALRKRASVVPQALAQGLDFDPGAVETLRKTLQDIIAMLANRPPS
LEK
>RPC_1608 conserved hypothetical protein
MAKQIELQPDHSPPVPLTAQHDRSAFDCGVAALNEWLWHRALNNQSRFSR
TYVVCGGKRVVGYFCISAGAIERAKAPGKLRRNAPDSIPVSVIGRLAVSR
DHAGQGLGADMLADALRRIAVASQSIGIAAVLIHAKDEAAKRFYLKCAEF
IEYPTDSRTLFLPIETVVAALKDE
>RPC_3025 two component transcriptional regulator, winged helix family
MGSQFVTNGGSPGPRFAVERSDEIGQRRLMTEQTPQILVVDDDPEIRKLL
ARYVEGQAFRVLLAASCAELRQRLATEQIDLVVLDVMLPDGSGLDACRDL
RAKRNPIPIILLTALKEDVDRILGLEMGADDYLSKPFNPRELVARIRAVL
RRRSETPAPVGASRAYRFEGFVADPQVRSVVDPTGTAIELTGAEFDLLQV
FLDRPGRVLSRDQLLDFTRGRSDTFDRSIDVLISRVRRKLDPSGTARLLK
TVRNGGYQFVVKVEAVDMPS
>RPC_3705 cold-shock DNA-binding domain protein
MSMGTVKWFNATKGFGFIQPDDGGNDVFVHISAVERAGLGTLREGQKISY
EIVADRRSGKSSADNLRAAG
>RPC_3174 transcriptional regulator, XRE family
MTKTKDLHKAWSKDPTYRAEYDALEEGFTVMAAIAKARRRAGLSQAELAR
RMNTTQSTVARLESGRGQPSTRTLLRFAKATGHKLKISFQPVKGKAKS
>RPC_2179 transcriptional regulator, TetR family
MVAFSSSSAGAPADEDSAKRRQILDGARAVFLELGFDGASMGEIARAAGV
SKGTLYVYFTDKSALFEAIVAREVLEQAKIAFNFDVTRDTPSTLRDFGIA
YIQLLCRPGGGSSIRTVMAIAERMPEVGKRYYHNVIALVIDRLANYLEQR
AGLGELAIDDFHLAASQFMKCCQATLFMPFLFNAKPSPSAEEIVRVVDSA
IRMFLATYQVKRGDYSSS
>RPC_2640 Ribonuclease III
MKQDTTSIEVSPTPDAAAAAPDPGRETAAARKRRSKADAKAAAAAIEARI
GHAFADPALLATAFTHVSALKSARNRADSYQRLEFLGDHVLGLVVSDMLY
RAFPNADEGELSKRLADLVRKEACADVARSLDLLDGIKLGTVGAGAGARL
RKSVLGDICEAVIGAIFLDGGYPAAESFVQRNWLERMRKPVRPLRDAKTI
LQEWAQGKGLPTPVYREVERTGPHHDPQFRVAVDLPGLAPAEGIGGSKRA
AEKVAASVMLAREGVSSGGNEG
>RPC_2628 transcriptional regulator, BadM/Rrf2 family
MKRDGRLSGVLHVLLHMIGLEQPTTSEHLAKAMMTNPVVVRRIMAGLRDA
GFVRSEKGHGGGWTIACDPAAITLADIYRAVGAPAILAMGHRTESPGCLV
EQAVNHALDGAFREVETAFMAKLGDVTLAVLAKDFKQRLAKYGQTLEDQI
HAA
>RPC_2133 transcriptional regulator, AbrB family
MSTTVTIKGQITLPKKVRDAAGIKPGDKVEIRNTASGGIFIGKSGSEADY
LKKLQAIAKRYPIHGSTTDEIMLELRGDPADDYKT
>RPC_3581 transcriptional regulator, TetR family
MAAKVAVKRRGRPRKTEQPKSVAILQAALAAFAGHGFDGTNLRQIATEAE
IDVALIPHQFGSKLGLWRAVVDDIAERTLPDFRSIIERGSPETSAGETLQ
LAMARMIDHLCDTPQLAMFVVNEVGEQGERFEYVYDRLVRPMHDLLLPPI
RAAHASGAIKDVNPDFFFATFTAAISMTVVMRPFIARFSSHAKKEQAFRR
ELKRALLAVGFA
>RPC_3183 transcriptional regulator, ArsR family
MQLVHPATEDISLAGVLAALSDPMRLRIVKALLEQADCMSMSCTAAAPCP
EMAKSTLSNHFRVLREAGLVRTTKKGVEHRNVVREADLDARFPGLLKSIL
QHADGM
>RPC_2218 transcriptional regulator, LysR family
MDRLDAMTAFVAVADLQGFAPAACKLGLSPSAVTRLVAALEERVGARLLQ
RTTRSVTLTDVGARYLERARRILADVEEAEGSAQAERTQPAGRLVVSAPV
GFGRLHVTPLISAWLKRYPEVAGELRLTDRVVNLVEDGVDCAIRIGQLPD
SSLVARAVGDMRRIVVASPDYLAARGVPKTPAALAKHDTIQFGALAAAPD
WRFQDAGREIRVACTPRFTTNVADAAIWHAEQGGGLTRVLAYQAAEGLAA
GRLKVVLRKFEPPPLPIHIVYPTSRLLSAKVRSFIDLLIETADWRFAR
>RPC_3072 transcriptional regulator, XRE family
MAKTGSLKSNVQFIHAPGGDLAVLSRTDYERLVALAAEAEEDSAASDIVR
SSKRALKEGREVALPKAVADRLAKGDNAIRVIREWRDMIQDELAVAVGIS
QNYLSEIETGRRKGPAELQMKFARALGVPIDLLIE
>RPC_2740 transcriptional regulator, LysR family
MAIDLHHMRHLVAVAEELHFGRAAARLNMAQPPLSQSIKRLELALGFALF
SRTQRRVELTPAGQVFLAEARRTLQQADETVRLARRAAAENLAELAVTFT
SAALYRVLPTALRAHRDRFPSVEIRLDERPTDAQIAGLQDGSVDVGFVTP
PLKAFSGLELEVISRDRFALAVPISSPFAQRDAVALHELATEAFVLFPYV
QGPALHGRLMSACRQAGFLPRVRQEARQMHTIFSLVAAEMGVSLVPEGAR
SMRVEGVTMVALSDFPVDLTWDLSIAWKPKGAGRPLRAFIEIVRSLS
>RPC_3761 hydrogenase accessory protein HypB
MCTVCGCDGKSDHDHAHDGHDHEHVHGDAHHHHHHHHHEGDDHDHVHAHD
HSHDHDHAPAAAPATLDFGGGIAGVHVAGLSQSRIVQIERDILGKNNAHA
ADNRARFAAAGTLALNFVSSPGSGKTSLLVRAITDLKDKFPMAVIEGDQQ
TANDAERIRATGVPAIQINTGKGCHLDAHMVGHALGQLPPLSQGVLFIEN
VGNLVCPAAFDLGEAHKVVVLSVTEGEDKPLKYPDMFAASDLMLINKVDL
LPHLDFDLASCIEYARRINPKIAVLTLSARSGEGFSAFYAWIEKRLAEAR
SAAKAAE
>RPC_2905 sigma-24 (FecI-like)
MADTNRLKLRRQLVENYDKLIKHLTRRLGSSDFAYEALHETFVRLDGVPE
TTEVRSPADYIFRTAINIAKNRRKAQSYRVSPFEIEALIDVTDEMPDPAR
TAEARSDFQAFERALLQLPERPRHVLRLMSLEGKTAQETAEILEVSVRTI
AADYQLALQHCAHSLNRPLLARLGGPRPRV
>RPC_0619 putative transcriptional regulator, ArsR family
MESEQVILALAALAQSTRLEVFRLLVKHEPAGLPAGEIGRTLAVPQNTMS
SHLAILTRAGLVSSARRSRSIVYRADLARFQSLALFLLQDCCGSRPEVCA
PLVANLTPCCPTE
>RPC_3229 transcriptional regulator, AraC family
MVLGQTPRLGAPSDAPLIDGLDGAAMRSALTKTLDVFTRGLHQHPHGELF
LLRAGYLKAQSPNGRWLIPAGHLCWVPPFTEHGADTDSTQGVRIYLAPEL
CGVLPRDSCVMRNTALILAVIDRLTAPDRTAKVLTEPEKRLLGVLCDEIE
RARSTPILLPMPQDARLSRTAEKLLGSPNDQSDLDVFAAEAGMSRRSFTR
NFKLDTGLSIGEWRQIARLMHGIDMLAAGKSVTETAFALGYDSISSFVAL
CQRHTGMSPKLLARAVAG
>RPC_4581 transcriptional regulator, LysR family
MDYLMAMRAFIRTVELGSFSLAATELDVKVSTISRHITALESDLGAALLN
RSTRRLHLTEAGTLFFDRATQILLAVEEARAATASLNESPRGVLRISMPT
AFGRLHVMPHIKDFVAEYPEIRIAATLTDATVDLIETGDDVAVRIGSLTD
SSLVARRLASHRRILVASPGFLRQCEPISRPRDVARQQCLIFTLQSGDCW
YARRSDDSSTEPLQIAVSGNMRANDSEALQGAALAGLGIALLPSWLVGDD
LRAGRLVVPLAGWDWFAARGPEPAIWGVYPPKKIVSPKVRSFIDFLARRY
GSPAYWDRRSEAAVG
>RPC_3041 transcriptional regulator, AraC family
MLAIQHLDSFAMCRSAVDQEMEALGGADAVRVDHPCEDVAIYIIDTFVPH
DVTLSQEGPATFSLSVFLEGRGAVSLDGAQPLLIEPGMAALFTSSRFSRG
QNSVRGGQRLLAVDIRFDFRFLLKAGGAALATLGGSLATDHSLPECQTSL
VGFRAPPPLLKAAQDIITCRLTDEMSRRLYLYSRAIESLSVVTSSLPQIL
ARPDAVRGKDRDRLERARQIIDGQYHIDWTIARLAREVGLNERKLKQGFR
QVVGNSVHSYLRKIRLDAAATLLEDGHSVTEAAFSVGFDNLSHFSKIFRA
EKGLAPSQYAKRP
>RPC_2200 transcriptional regulator, AraC family
MPILKEPPDPAEWSDPDDIPRPVVAFGVTLAGPGLELAPHRHRKAQLLLS
LRGVLTCEAQSGLWLVPPQHAIWIPGGALHAIRATGTIEGYDIFVEPALT
LGMPASCCTMSVTPLLRELLVRAAGFPLLYPEGGAESHLFTLLLDEVATA
SVQRLYLPMPADVRLRRIVELMMADPTDRGTMASWAKRAGLSERTLARLL
ARETGMSFGRWRQQLTIMLALQRMAEGAPIQRLAVELGYESAASFVTMFR
KTLGSSPGRYMARLRGSPAAADQDPKQPAR
>RPC_4895 transcriptional regulator, LysR family
MNERANLGDLSAFVAVAEERSFTRAAAKLGVSQSALSHTIRELEARLGIR
LLTRTTRSVAPTEAGERLLRTVAPRLAEIDAELAGLSDLREKPAGSIRIT
AGEHAAETVLWPALARLLKDYPEIKVEICSDNTFTDIVAERFDAGVRFGE
QVSKDMIALRIAPDMRMAAIAAPSYFAQRPRPKRPQDLTDHACINIRLPT
YNSLYAWEFEKAGRELKVRVEGQLIFNTLPLALQAALDGFGIAFMPEDLA
TSHLAAGRLVRVLGDWCPPFPGYHLYYPNRKPTPAFALLVEALRYRG
>RPC_0093 sigma-24 (FecI-like)
MQNVIALNEAGRQGIVAARATTDEMLLEAIASGNRCAMHTLYARHHLRVY
RFILRMVRDASVAEDLVSQVFLDVWRTAGQFEGRALVSTWLLSIARFKAL
TALRQRQHEELDQDDVLEIADGAETPEAALDRSRTNAILRACVAKLSPAH
REIITLVYYHEKSVEQAGLIVGIPPSTVKTRMFYARKQLAELLKSQGIEN
LAA
>RPC_1953 putative transcriptional regulator, CopG family
MERVTVSLDDDLLEQFDGFIRRKGYMNRSEAVRDVLRDRLQEDRLSENNA
PLCVACLSYVYNHHERELARRIAEIQHAHHDLIRSTMHVHLDHDSCLEVS
MMEGPTIAVRELADALMAQTGVRHGRVNVVPVDVTVTSHTHGHRGHHHDH
GDETAKPAPHFHTSPKT
>RPC_4521 phage transcriptional regulator, AlpA
MPEPDRIIRLKTVLSRTGLSRSTIYRKITEGTFPAQIRISVNGAGWRESD
INRWIADPVAWRPKHEFDDAR
>RPC_1124 two component transcriptional regulator, winged helix family
MFVVIDDRKGVIQGYADGFDREGIVSIGFSSTDFRDWLEGALGNDLGAIG
AFLLGDCADRISLPPSIRNRCRAPIIALNGLKHLKSTIELFEAGVDDVVN
APVHVREILARTAVIRRRTIGPAEQTPTSVIRVFLDGRDPEIGGRTLALP
RRELRILEHLVSHQGKWLTKNQMFNAIYGLFDASFDENVIESHVSKLRKK
LRGHLGYDPIESKRYMGYRLDDLKSRANGESDPSRHS
>RPC_1901 transcriptional regulator, TetR family
MAMGRPRAFNADKALDEAMEIFWRHGYEGATIAQLTDVMGINPPSLYAAF
GSKEGLLRAALDRYTAKRAAFLTEILQAPTARAVAEKLLMGIADVQTDPS
HPPGCLLVQGGLACGSGSENVPFELASRRAETEDRLRQRFEQAKAEGDLT
ATADPCALARYLSAVTVGMGVMASSGAGREELREIASLSLKAFEQQAATV
S
>RPC_4030 sigma-24 (FecI-like)
MPLTDSLRDDILAAVPSLRAFAISLSGNGDRADDLVQETLLRALANIDSF
QPGSNLPAWLFTILRNLFRSDYRKRRREVEDAEGSYAKTLKSQPGQNAHL
EFEEFRAALEKLPQDQREALILVGASGFSYEDAAAICGCAVGTIKSRVNR
ARSKLSAMLYVDGAEDFGPDDTVRAVIGGSGG
>RPC_0007 transcriptional regulator, AsnC family
MAELALPPVESHRRIDAIDRKILTVLQQDASLSVAEIGDRVGLSSTPCWK
RIQRLESDGVIMRRVALVDQNKIGLGLSVFVSIESGDHSDAWLKKFADAV
SAMPEVIEFYRMAGDVDYMLRVVVADMRAYDVFYKKLISAVALKNVTSRF
AMEKIKSVTALPVPALEVA
>RPC_1580 GreA/GreB family elongation factor
MSVAFTKEDSAETASETMLPDRPISPHPNWVTAAGLKALQDQLDAARTGV
EAAQAIADVNERRRQEAGPLRDARYLAARVRTAELMPVPSSSDIVAFGST
VTFRRGDGRVQSFRIVGEDEADPKAGSISFVSPVARLLLRKSVGDVVGSG
AQELEIIAIA
>RPC_0655 two component transcriptional regulator, winged helix family
MRNEGALQSSDVVIAIVDDEPLIQSTLVSYFQNAGFAVRSAETADQLRRL
MARERIDFILLDIRLPDGDGLTLMRDIRADSDVPVILITSRAEEADRIIG
LELGADDYVTKPFSPREVLARVKTVLRRTRAVADPGRGKRLRRFAGWCLD
LENHRLTSASGEPMRLTSAEFELLAALVRHPGRIMSRNDLLDVMSSREWD
SNDRTVDVLVGRLRRKIEADPGKPQIIVTEYGLGYVFAEKVA
>RPC_4918 two component transcriptional regulator, winged helix family
MSARILVVEDEEALTTLLRYNLDAEGYDVETVARGDDADTRLKERIPDLV
VLDWMLPGLSGIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGAD
DYIVKPFSVPELLARVKGLLRRASPERLATVLAYGDIELDRDKRRVARSG
RPIDLGPTEYRLLEFFLEHPGRVFSREQLLDSVWGRDIYIDERTVDVHIG
RLRKLLNPGREQDPIRTVRGAGYALDDRFAAKAE
>RPC_1855 transcriptional regulator, GntR family
MAEPELAIVRIAPETSFKTKAYDALKEAILKMDIYATPEPIMLDERALSD
KLGVSRTPIREAVAMLEQDGFVKIVPRRGIVVVRKTKAEIVDMIRAWAAL
ESMAARLITTTARKKDISGLRDYFKEFSQYRLPQDHIEEYSTANIAFHQA
LISLGESPTLVDMTTDILLHVRGYRQLTIGRADRIAASLPEHLAIIEALE
DRDTERAEKLSRDHTLRLATYVETQGQELFR
>RPC_3458 DNA-directed RNA polymerase, beta subunit
MAQQTFTGRKRVRKFFGHIREVAEMPNLIEVQKASYDQFLMVDEPVGGRL
DEGLQAVFRSVFPISDFSNTSMLEFVRYEFEPPKYDVDECRQRGMTYAAP
LKVTLRLIVFDIDEETGARSVKDIKEQDVYMGDIPLMTMNGTFVVNGTER
VIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPYRGSWLDIEFDAKDI
VFARIDRRRKIPVTSLMFALGLDGEEILSTFYKKIQYKKIKEGWRVPFDS
NRFRGYSTINDLIDADTGKVVLEAGKKLTVRAARQLQEKGLKALRLSDEE
LVGNYLAEDLVNPKTGEIYAEAGEEITEKSLKGLNEQGYKELPLLDIDHV
NIGAYIRNTLAADKNMTREDALFDIYRVMRPGEPPTIDSAQNMFQSLFFD
SERYDLSAVGRVKMNMRLELDAPDTHRTLRKEDILAVIKTLVGLRDGRGE
IDDIDHLGNRRVRSVGELMENQYRIGLLRMERAIKERMSSVDIDTVMPQD
LINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRE
RAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVETPY
RRCKDGRVTDEVVYLSAMEEGRYSVAQANVQLDPKGRFVEDLIVCRDGGT
RDVVLIPADKVDFMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQA
VPLVRAEAPFVGTGMEGVVARDSGAAIAARRTGVIDQIDATRIVIRATDD
LDPTKSGVDIYRLMKYQRSNQSTCINQRPLVKVGDMVAKGDIIADGPSTD
LGELALGRNVLVAFMPWNGYNFEDSILLSERIVKDDVFTSIHIEEFEVMA
RDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKITPK
GESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVD
KDERALAIEREEIERLAKDRDDEQAILDRNVYGRLADLLENRQGIAGPKG
FKKDTKITRAVIEEYPKSQWWLFASPNDKLMAEIEAMRKQYDESKKGLEQ
RFLDKVEKLQRGDELPPGVMKMVKVFVAVKRKIQPGDKMAGRHGNKGVVS
KIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWACAGLGKR
IGQTIDAYYQKQDLKPMRETLRKIYGEDETIKSLNDAELLELARNLKPGV
PIATPVFDGAKEADIEEMLKLAGLDASGQSTVYDGRTGDTFDRKVTVGYI
YMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEA
YGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEM
RSLGLNVDLHNSKLATPTSEAAE
>RPC_2225 transcriptional regulator, IclR family
MAGMKRPGKKVATDRNFVVALSRGLDVLRAFHPNDGLLGNQEIAARTNLP
KPTISRLTYTLCKLGYLTQVPRFEKYQLAPAALAIGYAALANLGIRHLSE
PFREELMRQTGGAVAIGGRDRHSMIYFGQARSSLTVGVQLDVGSRVPIAT
TAMGRAYLWALADDERAALLRDLREHYGSRWSKLKDGIERSGELVAKRGF
AISAGEWQDDVHAAGVSLKLNDGTGPYAFNCGAPAFRFTEDRLINDIGPR
LVAMVRNIEAALGGKAAPPPRKTDNNKTKPGGKGARVVEGTR
>RPC_2512 putative transcriptional regulator
MASLAEMRVIEADDVAEDGAAEVFGPTREEVSEHPQARPEELRLLEALLF
ASAEPLDTAALAKRMPEGVDVKAALLQLQADYAHRGVNLVRVANKWTFRT
AGDLAWLMTRESTETRRLSRAAIEMLAIIAYHQPVTRAEIEDIRGVVTSK
GTLDVLLETGWVKPRGRRKTPGRPLTFGTTEAFLSQFSLESLGDLPGLEE
LKGTGLLDSRLPVGFSVPMPSDDPALRDDEDPLEIGDLELALAPVADAED
GNGSAD
>RPC_3588 sigma-24 (FecI-like)
MGARVTPSDNRLTDAAPDVARIRHQVADVVRRDRGRLLRFVHAKLSGASD
LDAEDVVADTVLRLIERADLLTEVENVTAYLFRALANGVIDRIRRRRELT
PLPEEVEDPALGPEQTLEQTQLRRRLRAALDRLPPAQRAVWIAVEIEGVP
FRELAAQWNEPIGTLLSRKNRATKSLRQWLAEDAT
>RPC_3914 transcriptional regulator, XRE family
MDMRKLVGRNFARLRKEKDFTQERFAEVSGFTQQYVSGLERGKRNPTVVT
LFHLAAALGVSHVDLIQPDEEAAGERSKAARRKA
>RPC_2653 transcriptional regulator, MarR family
MIKAVATAVETASTASGVTPVQPLYLEALTLVERLHRRLLDVIKDEFDRR
GRSDINSVQALLLYNIGDKELTAGELRTRGYYLGSNVSYNLKKLVELGFL
DHQRSRVDRRSVRIRLTTQGQEIRHIVDALYQKHVKTVEQVGGISNDEFA
TLNKSLHRLERFWTDQILYRL
>RPC_0529 transcriptional regulator, PadR-like family
MFGFHHDRHAQGRPGRGEGSHHHHAGHGEGFPHHHAGPRGGGRFGRGPDA
EDFQGDDRGHGGGRRRRFDGAELRLVLLKLIADKPRHGYDLIRAVEELTG
GAYAPSPGIVYPTLTLLSDMGLIAEQSAEGARKQFAVTPEGTAHLAEQAT
EVAAMLARLEALGAMRERVDAVPVRRAMHNLRSVLQHRLGEGLDKERLQA
AVALIDEAAQKIERL
>RPC_4632 transcriptional regulator, LysR family
MDLHQLRCFVAAAEELHFGKAAQRLQMLPSALGRFIRLLEDDLGTRLMAR
TTRSVTLTDDGALLLREARGLLAQADNLAAKFRSSGRKQAATVRLGAIDS
AAAGLVPMLLQDFRQRCPDVTVQLIEDKTIRLLPRLLSGRLDLAIVRPPE
HPDKRLELLFLLHETAVVAVSDRHPLAARKRVTIADLAEQRLIVPDRRSR
PHSHDLTAKLFAEAGLEPHIAQIADEKQTIVNLVSAELGVAIVPKWTSRM
ATRGVRYVRLATSDMNRLPLAAAWTRGTRDPMRDEMLQTLQARLAHYGRE
A
>RPC_4032 urease accessory protein UreG
MSDYHGPLRVGIGGPVGSGKTALMDLLCKTLRDRYQIAAITNDIYTKWDA
EFLVRSGSLTQDRIVGVETGGCPHTAIREDASMNLAAVADMRAKFPDLDL
VLIESGGDNLAATFSPELADLTIYVIDVAAGDKIPSKGGPGITRSDLLVI
NKIDLAPYVGASLDKMQIDAKRMRGERPFVMTNLKTQEGLDRIVGFIEAK
GGLRAGS
>RPC_3839 transcriptional regulator, LysR family
MARNHDGFTDMDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVSALE
QELSVSLFHRHARGLILTEQGDLLFRTAHDVFMQLQAARAKLTDSRERPS
GDLKVTTTPGLGIHWLVPRLGEFTALYPEIRISLIVTDEELDLSMREADV
AIRTRKPTQPDLIQRKLFSIGFHAYCAPEYIKHFGTPRTLEELDNHRLII
LGDTQVPPYLQNRNWLIDAGRNGAGPREPYFKVNNILGVIRACQQGLGIA
ALPDYLVEENNRLVQLFGEQDSIQLDTYFVYPEELKSVARVQVFRDFVVS
KAQRWPS
>RPC_2371 transcriptional regulator, TetR family
MIGFVPWSCAGEAALSTLDTPKRVAGKRVREQERRRQAILDAAFVQFTSE
GFAATRLDAVADAAGVAKGTIYLFFKDKEDLFEKTVLAAIGPTLSNLDSV
VARADLPFPQLLGQLSDLFRREILETKRREIVRLVIAEGARFPGIAEFYH
REVISRGLSIIRKAAQRAQDNGELPSDALVRFPQLLFAPMLISIIWSCVF
TQHEPLDVEGMLAAHRDLLLGVPHDGSAKP
>RPC_3469 transcriptional regulator, TetR family
MHRSQQKSESEPNGQEVRSRETRAKMIEAAIELFATVGYEAASTRALAEQ
AGVNQAAIPYHFGGKRELYLAAAQTLAEHARERIAPIVAQLRQAHQTDPR
SVVEEALRRVFRLFASGSESLAWVTFVIRSQYEALEGFRIIHEELAPLER
ELKRVIGEATGETDQQRLGMKLTVALAPIFSFRPLQQFNLSVLGWDKPAP
HLLDKFETVIVEAALRELFTELPQAVDLARGRRGPGEKTLADRASPSTKG
RRSCPIKA
>RPC_1830 two component transcriptional regulator, winged helix family
MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVL
DIGLPKMDGISVLEAWRRNHRAMPVLILTARDRWSDKVQGFDAGADDYVA
KPFHLEEVLARLRALLRRSAGHAQSELTCGPVVLDTRTGRVSVNGNPVKM
TSHEYRLLAYLMHHSGRVVSRTELVEHLYDQDFDRDSNTIEVFVGRIRKK
LDVDIIQTVRGLGYLLTPPPAAPAAHQRP
>RPC_4272 cold-shock DNA-binding domain protein
MAKGTVKWFNATKGFGFIQPSNGGKDVFVHISAVEKAGLSTLNEGQTVEF
EEVANRGKTSAENLKV
>RPC_1667 transcriptional regulator, LysR family
MADFKAIETFLWVVTLGSFRGAAQKLNTTQPAISQRIAQLERELGVKLLQ
RDHRSASPTPSGRQMMVYAEKLIGLRSEMLAVVGDRSAMRGVLRLGVAET
IVHTWLPQLIKSVNRAYPNLSLEIEVEITPDLRARLMAQEIDLAFLLGPL
PDPTVRNRLLCEYPVGFLASPSLGLGDATLTLRDLAKHPIITFPRKSQPY
ETIRSLFNRPELPPIRLHASASLATVIHMAVEGLGIAVIPTDIVEAELGD
GRLQLLKTDLHIPPLTFSASWLDSADTTAVERVAHLATEIAEVGGFAGQA
PAKPQPQSQPAAKQPSREPIG
>RPC_2964 transcriptional regulator, AsnC family
MLDELDRKILATLQVDSSLSMQEVAERVGLSSTPCWRRIQKLENSGYIKR
RVALLDAEKLNLGVSVFIAVRTNQHSAEWVQRFRKIVVSFPEVVDFYRLS
GDVDYLIRAVVSDIRAYDDLYQRLIAKIDLQDVSSMFTMEQIKSTTELPL
FNAPAKRGRSDAPAERSLAFTQ
>RPC_2210 transcriptional regulator, LuxR family
MDIEQALSTIDRANSVDDLARTLVDWRNESGVAHLVYHATHVPGCEQPNP
VLLLTYDDAWVKRYVEQDYFGIDPVVVAGRDAVLPIDWMSVEHATPQARQ
FFAEAESYGVGRHGFTLPIRGPAAERALFTITTNATDDHWHRWRFSYLKD
FHLLAHYLHDRAMRLAGLRLDHAMRPLSRREQQCLQGLVHGRTPGQIAGD
LELSASAVHGYLRTARRKLNCATHEQAIAKAVRLELLQNS
>RPC_1842 two component transcriptional regulator, winged helix family
MVTESNTALPQSETEMRLLIIEDDRESADYLVKAFREVGHVADHAADGEE
GLALADSGDYDVLVIDRMLPKRDGLSVIGTLRDNGNRTPALILSALGQVD
DRIKGLRAGGDDYLPKPYAFAELLARVEVLSRRHGGPAEETSYKVGDLEL
DRLSHRVARGDEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVWDYHFD
PQTNVIDVHISRLRSKIDKGFERPLLHTIRGAGYMIRDGG
>RPC_3178 transcriptional regulator, MarR family
MTATPSRSAPSLPDVSEMLCFSIYSAEHAFTQLYRPLLDRLQLTYPQFLV
MVTLWRRDGQAVKELGKTLFLDSSTLTPLLKRMEAAGLITRTRNPKDERE
VQLHLTAQGRALQSQAADVMQCIEQAVGLDGTTIEAIKTSIDAIRDRLHK
KMGS
>RPC_0287 parB-like partition proteins
MADEQRSRLGRGLASLIGDVGGEAAHLERPRAQRKVPIEFLKPNPRNPRR
AFSDAELGELSDSIKQHGVIQPIVVRPIKGAQDRFEIIAGERRWRASQLA
GLHEVPIVPIDVSDSVALEIAIIENVQREDLNALEEAQGYHALAENFKHG
QDEIAKLVGKSRSHVANMMRLTRLPDDVQALIAAGKLSAGHARALIGVPD
ASAAAQRIVAEGLNVRQAEALAHEEGVPERAPQKARAGKAAKDPDTLALE
KRVSDALGMKISIDDRGGAGAVQIKYRDLDQLDDIVRRLEAGG
>RPC_4384 hypothetical protein
MEHGVFCAFLEGSDNVIGYYALQLGSDSVSELSETNKDKYIRNYTAFPAV
NLSFLAVDTNYQRQALGSHLLMDVFSKVTAITAHAGLLLIPFTQGHAKYS
GTILSLPLEPRG
>RPC_4475 transcriptional regulator, NifA, Fis Family
MVYREAHVADAEESRPTTLIPLSEIALTGIFEISKILTAPARLETTLANV
VNLLQSFMQMRHGTVSLLADDGVPDITVGAGWNEGTDDRYRARLPAKAID
QIVATSVPLVVENVSSHPMFSRADADALGASPEVRVSFIGVPIRIDSRVV
GTLTIDRVRDGRSIFRLDADVRFLTMIANLIGQTVKLHRVVARDRERLMA
ESHRLQKQLSELKPPRERKKVRVDGIIGESQAIRGLLAKVGIIAKSHSPV
LLRGESGTGKELIAKAIHELSSRANGPFIKINCAALPESVLESELFGHEK
GAFTGAIASRKGRFELADKGTLFLDEIGEISPSFQAKLLRVLQEQEFERV
GGNHTIKVNVRVVAATNRNLEEAVARNEFRADLYYRINVVPMMLPPLRDR
ASDIPLLASEFLKNFNRENERDLEFDPASMELLQGCSFPGNVRELENCVR
RTATLAPGPAIHQDDFACHHDECLSSILWKSHSERTAQRPPPEIPLAVAP
IGRADGPRGNVAAPAPTVPTPQPPARVEAASDAQMSERERLVDAMERSGW
VQAKAARILGLTPRQIGYALKKYDIEVKHF
>RPC_2238 Ribonuclease R
MSTKKRDTSFPDRDALVAFIRAQPGKVGTREIARAFGLKNEDRVELKRVL
RDLADAGTIKRRGKIVAEPEALPPTLMADITARDDDGELIATPTEWDEQS
GEPPKIRIHVPRRAAPGTAAGIGDRALLRVEPGAEAYRARVIKVVDQTKT
RILGIFRALPGGGGRLIPVDKKQVGREFNIAATDAGGAQDGDLVSVDPIR
TRGYGLASGKVKERLGSLATEKAVSLIAIHSHEIPQEFSAEAIREADAAK
PASLKGREDWRELPLVTIDPPDAKDHDDAVHAEPDPDPNNKGGYILHVAI
ADVAYYVRPQSALDRDALTRGNSVYFPDRVVPMLPERISNDLCSLKPGEA
RGALAVRIVIGPDGRKHSHSFHRILMRSAAKLSYAQAQAAIDGHPDDTTG
PLLKPILQPLYDAYAVVKRGRDERDPLDLDLPERKILLKPDGTVDRVIVP
ERLDAHKLIEEFMILANVAAAEMLEKKALPLIYRVHDEPSVEKVHNLVEF
LKTLDLSFAKQGALRPSLFNRVLAQVKGHDAEPLVNEVVLRSQAQAEYAS
QNYGHFGLNLRRYAHFTSPIRRYADLVVHRALIRALNLGDGALPDTETVE
TLAEVAAQISVTERRAMKAERETTDRLIAHFLADRIGASFQGRISGVTRA
GLFVKLADTGADGLIPIRTIGSEYFNYDETRHALIGTRSGTIYRLGDVVD
VRLVEATPVAGALRFELLGDGGVVAGGRPRPHIRSRGAASSEPRSKAHPG
RNPSKAKKDKKSKPPKRDRKSKIKKANKAKGGTPGKPKKG
>RPC_0292 transcription termination factor Rho
MREMKLQDLKAKTPAELVSFAEELGVENASTMRKQELMFASLKQLAIKET
DIIGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTI
EGHIRSPKEGERYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPDQRFRL
ELEDSSRKDLSARVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITA
NHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVI
EKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDR
KVSDKRTFPAIDISRSGTRKEELITDPQLLKKMYVLRRILNPMGTMDAID
FLLDKLRNTKNNAEFFESMNT
>RPC_0835 transcriptional regulator, LysR family
MTFPPSFRQVRAFLALARHLKFTSAAQELNVSQPTLTVQINQLEQQLGIR
LFDRDKRRVELTPAGRNILPLMERLSLNMDEVLLAASDLTYAKRGIIRVA
ALPSVAASFLPRGIKDFREQNPGIIIDVWDVVGEEIIKLVKAEEVDFGIG
THFSADKSIKVQDYLSDSLCAFFPVEHPLNTAASVVYVRDVASCPLVVTR
KNSSVRVLFERSMAREGCELNIVMETNYMSTALSMARAGVGVAILPSTAV
EAGNMAGLSFKPIDPPHFNRRVGIICKADRTLQPIASHFVEELLRMTPLR
ADNGFKDLRRFGAWSEPCAFDENADLAATWQGQPCSITSPASSAPYGAIE
DHMPHHLRSSGTSD
>RPC_1041 transcriptional regulator, DeoR family
MAPDNLRYRDAPARRGAIIDQLKNLGFLTIGEVAKELGVSEMTVRRDARR
LHEEGRLIALRGTLRLPSSHDESETEYQRRAAAATTAKEMVGRIAASEVL
PGDVIAIDAGTTAFQVARALPEDFDGTVVTHSIPVLDLLIDRPMTKTIAL
GGDLYRPSRALVGSFTVECAQRLSVRTFYMGAAAVDERGVYALGDVERLV
KQTLMSIADRVVLVIDNRKFDVKAPVFMCDWSRFSLVVSDQVPPDQITAL
LRQKNIQIQVASEG
>RPC_2120 putative transcriptional regulator, TetR family
MAVREQIRVGGRSARIQAAVHQAVKDLSTTTPRDELTVPQIAAEAGVTPS
TIYRRWGDLGALLADVAVERLRPIADPEDTGAVETDLQAFVDQYAEEMSS
PVGRALLRDVFASAESFPLQCAGFIQNHLTIIAARAKARGEQPFAVDELI
DHVVAPILYHILYDDREITPDYCHALLARLHSLPQGR
>RPC_2634 DNA-directed RNA polymerase, omega subunit
MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTIDRDNDKNPVVSL
REIAEETISPEDLREELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDT
EVAPERMTEEELLKGLEGLAPPEEQPEEDE
>RPC_3457 DNA-directed RNA polymerase, subunit beta-prime
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTF
KPERDGLFCARIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRR
ERMGHIELAAPVAHIWFLKSLPSRIGLLLDMTLKDLERILYFEYYVVLEP
GLTALKDRQLLSEEEYLRAQDEYGQDSFTAMIGAEAIRELLKGLELEKLE
ASLRVEMQETESDIKHKKLAKRLKIVEAFRFSGNKPEWMILTVVPVIPPD
LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVD
YSGRSVITVGPELRLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAK
KLVEKERPEVWDILDEVIREHPILLNRAPTLHRLGIQAFEPVLIEGKAIQ
LHPLVCAAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNILHPANGLP
IIVPSQDIVLGLYYLSILREGLPGEGKLFGEAAEIEHALHAKVIHLHTKI
KYRWEGLDENGKQVSRWYETTAGRTMLGQVLPKSVKMPFDVINKLMTKKE
ISGVIDQVYRHCGQKETVMFCDRIMALGFYNAFKAGISFGKDDMVVPASK
WKTVEDTRTLAKEFEQQYNDGLITHGEKYNKVVDAWSKCTKKISEDMMTE
ISAVKKNPKGGEAQINSIFMMSNSGARGSQDQMRQLAGMRGLMAKPSGEI
IETPIISNFKEGLSVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVA
QDCIITADDCGTKLGIKMRAIIDAGTVVASLASRILGRTAGEDLRDPLTN
KVVVKRGTLMEESHVDALQQAGIQEVKIRSALTCELVNGICGKCYGRDLA
RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQINEQSFIESNFD
GKVTIKNKAIAKNGEGHLVAMVRNMVVAVTDADGTERATHRIQYGARMRV
DEGDMVKRGQRIAEWDPYTRPVLTEVEGIIGFEDLVEGQSISETLDESTG
IAKRVVIDWRSQRGGADLRPAIVIKGKDGKILKLARGGEARYMLSVDAIL
SVDVGAKVKTGDILARISTESAKTRDITGGLPRVAELFEARKPKDAAIIA
EISGTIRFGRDYKNKRRISIEPVDTTEETREYLIPKGKHIHLQDGDIVEK
GDFIVEGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVI
VRQMLQKVEVTDQGETDMISGEQIDKIEFDQINAKAKEEGKKIATGTPVL
LGITKASLQTRSFFSAASFQETTRVLTEAAVNGKVDPLEGLKENVIVGRL
IPAGTGASMAKIREVAVKRDKLILDEREKQATIVPSAPEPEPLALPTPEQ
S
>RPC_1192 transcriptional regulator, AsnC family
MLNRSNHGTGLRMDELDRKLLRILQDDASIQNQDLAARVGLSPSPCLRRV
KALEAAGVIKRYVALVDGPAVGTGFIAFVEVRLEKQVEAYSSRFESVVLT
RPEVIDCAFVTGEFDYLLKIAVADLDEFHRFLTQVLARIEGVANTRSIIP
VKRIKETTAIKIG
>RPC_1502 transcriptional regulator, AraC family
MIAKSGQTAKKPRPCSADFDPERSDRPAVALHVDFSDYEAEVPRHQHRQG
QLILALHGAVTCTAANGLWIVPPDCGVWIPGGVPHSNQVTPNARLSYLFV
EPGAAALPQQCCTLSVSPMLREMILRLADVPGSYAADDHTGRLVRVLLDE
LALMPKQGLELPVSGHPKIAVIAAALTADPSDRRTLAEWAAQVAMSERSL
KRLMVQETGLSFGRWRRQLHLVIALRELAGGATVQRVSSDLGYESATAFI
VMFKKALGTTPTRYFAT
>RPC_4869 response regulator receiver domain protein (CheY-like)
MARVLIADDEESVRLMVARALALDGHQTVTAEDGAEALDILNRDRRSFDL
LLTDIKMPIMDGIALALAAASGFPKLTILLMTGFADQRERTSGLDAIVHD
VIAKPFSVEDIRAAVADALAAQR
>RPC_0876 DEAD/DEAH box helicase-like
MTFLTTSPPLARALAERNYNDPTPVQTAVLADQAAGRDLLVSAQTGSGKT
VAYGLAIAKNLLGDAERFEQAAAPLALIVAPTRELALQVHRELAWLYAYA
DARVVSCVGGMDPRQEQRELARGAHIVVGTPGRLCDHLRRGRLDVSQLKA
VVLDEADEMLDLGFREDMEFILKTTPPTRRTLLFSATLPRGIVALAKQYQ
QQAFRVEVANGEGGHADIEYQAIRIAPGDVEHAVVNVLRFHESPSTIVFC
NTRNAVKHLQTALLERGFSVVALSGELTQNERTMALQSLRDGRARVCVAT
DVAARGIDLPNLALVIHADLPNDAEVMQHRSGRTGRAGKKGVSVLLVPPA
RRRRAELLLNLAGIDAVWGTAPSADEIRKLDQERMFQDALFAEEPSAEDL
VLAQALLAERSPEYIAAALARLYRARLPSPEDILDPGERGARSREPRATT
RGDSRPRAEDRDYSPKARPGKASTRHAMEGGVWFRAAIGRKKNAEARWLL
PMICRRGGIDKQDIGAIRIHDTTTEFEISGAAAESFAAMIRRPDKEDNIR
IEAMGDAPAAQQAPDRRPPAGKPYERKPSSDKSYDRNHAGDGAPRDASFK
TKKSYDKPGYDKPAYDKPAYDPLANDKPMYAEVSPSGGSFELKPAFDKKP
KKPKKKFRE
>RPC_4233 two component transcriptional regulator, winged helix family
MRVLLIEDDSATAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILL
DLNLPDMSGYDVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMT
KPFHKDELVARIHAIVRRSKGHAQSVIQTGDLVVNLDTKTVEVGGQRVHL
TGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEPELKIIDVFICKLRKK
LANASDGRNFIETVWGRGYVLREPHEEEARIPA
>RPC_4932 two component transcriptional regulator, winged helix family
MRVLVVEDDRRIAADLERGLQAAGYVVETVRDGEEAWFRGDTEDYAAIVL
DLGLPGMDGLAVLKRWRGNDRRTPVLILTARGSWAERVDGIDAGADDYLP
KPFRMEELLARLRSIVRRSAGQACSVISVGDVTLDERQMKVDVGGVPVNL
SPLEYRLIAFLFLHRGRVVSQAELSENIYGNEDAHDSNAIEVLIGRVRKK
LGSELIETRRGFGYLVAGSGT
>RPC_3473 NusG antitermination factor
MSMRWYIVHAYSNFEKKVAESIREQAKQRGLEDLFEQVLVPTEKVTEVRR
GRKIDAERKFFPGYVLVKMKLTDEAFHLIKNTPKVTGFLGAENKPMPISE
PEAMRILHQVQEGVERPKASVSFEIGENVRVADGPFASFSGVVEEIDEGR
SRVKVAVSIFGRATPVELEFGQVEKV
>RPC_2017 two component transcriptional regulator, winged helix family
MRVLIVEDDPQLGPWLRDTLAVAFGASDLVTTLDEARAAVAVRSFDLVVI
DRGLPDGDGVQLLLDLRGQQPCPATIILTALDDPLDIARALDNGADDYVA
KPFEPIELVARAKAVLRRLFLDKGAVVSIGNLSYDIINRAVYVGQDPIVV
PRRELAILEAMVRRVGRVVLRETLEVAAYGFDDDIQSNAVESHVSRLRRR
FREANCKVTIRPVRGLGYLLSSE
>RPC_0778 transcriptional regulator, LysR family
MQFDLVDLRLFAAIAEARSITHGAARCHLALASASARIKALEQRLGVALL
LRGRRGVTLTAAGDSLLDHARIVLHATETLRGDLSAYARGVKASVRLIAN
TAALSEHLPKALAAFLSAHPNISIDVEERESAEIAAAIAAGAADIGLAID
QALPDNIERFAFCDDRLVLVAAKGDAVAGRRAVDFAAVLDRDVIGLAQGS
ALQDHLARQAARLGARLRFRARLKDFDAICQMVAAGVGVAVVPEAAAARC
ARSMPLAVLRIRDPWASRKLVICVRSLKALPKPAQQLAEHLRRAAH
>RPC_2610 transcription-repair coupling factor
MKSPTRSPAELLAPGQALTFANVAESAEGLIVSDLARAVAARPKPPAVSL
AVICRDGPRMQQLARSLEFFAPDLAVMQFPAWDCQPYDRVSPHGGVLAQR
LTTLARLSRLKGSDKPLIVLTTVNAIVQRVPAREVIAAQALSVAPGHAVS
MESIVAWLEHNGYNRSSTVREPGEYAVRGGILDLFPAGLDQPVRFDFFGD
TLESIRTFDAETQRTLLDMRALDLVPISEFQLVTDTIRKFRMGYVAEFGA
PLRDDQLYEAVSEGRRYPGMEHWLPLFQERMDTLFDYLDRTPIAIEPQGE
DAARERFKQIGDYYLARREARDIPGGGAIYNPLPPDRLYLAEPEWEKCLQ
GVALARLTPFAVPADDGHVIDAAARAGRNFAPERADAAVNVFEAVVAHVL
ALQGQRKKVVVALWSEGSRDRMASMLRDHKLLNLTSVNSWRTVQATPRNE
AMLAVVGMEAGFETDSVAVISEQDILGDRLVRPRKASRKLDNFISEVTSL
AAGDLVVHVEHGIGRFVGLQTLEVGGAPHDCLELHYAADTKLFLPVENIE
LLSRYGSDHAHVELDRLGGSGWQARKAKLKNRIREMAGELIKIAAERHLR
EAPKLVVQPHLYDEFCARFPYDETEDQLGAIQASLHDLESGKPMDRLVCG
DVGFGKTEVALRATFAVAMEGKQVAVVVPTTLLARQHARNFTERFRGFPV
NVGQASRLVPPKELAKVKKGIAEGAIDIVVGTHALLGKSIKFRDLGLIVV
DEEQHFGVSHKERLKQLRAEVHVLTLSATPIPRTLQLALTGVRDLSIIAS
PPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVCPRIEDLAGVKDF
LDKHVPEMKVAVAHGQMPPTVIEDIMSAFYDGKYDILLSTTIVESGLDIP
NANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPSQHQITAQAER
RLKVLQSLETLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQSM
LEEAIVNLKAGVVEPVADRWSPQITIGMPVLIPEEFVADLSVRLSLYRRL
ADLDTDEEIDAFAAELRDRFGLLPDEVRYLFKVAAIKAYCRRANVEKVDA
GPKGVVISFRDNSFAQPDRLVFFIKQHGKAAKVRPDMKVVFLQDWETPEE
RLIGTTEILRQLANLAEDRKAA
>RPC_0473 transcriptional regulator, XRE family
MSTKAPNPVDKYVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTN
RVGASRIQQISEILQVPVSFLFEGGPGGLAKADGFAEAASPAYVSDFLAT
SEGLALTRAFTRITDSKLRRSIVDLVEQIASREAPDQR
>RPC_2028 transcriptional regulator, LuxR family
MTSGAILWCLEKIRVAATADDLHHVLRHICEAYQLAHAVFHATDTPAVRA
ERPLLILTYPAEWVENYTRRDYFKIDPVVAIGRVGFLSLDWSTIDQKTAS
SAKFFREADEFGVGRHGLTTTVRGPSGERSLFTVTSNANAAQWTRQRDAC
IHEFQIIANHFHQRAMISTGLRGGDGPLPLSKREKQCIELLAKGFLPKQI
AALLDLSESAIRLYLCSARRKLQASTTSQAIAIALSLELITA
>RPC_2678 transcriptional regulator, MerR family
MHLDKAPDAFRTISEVADDLDIPQHVLRFWETRFAQIKPMKRSGGRRYYR
PDDVDLLRGIRRLLYGEGYTIRGVQRILKEQGIKSVQGLANGLARPAAPD
PRDVESPSGGFDEANLPSPELDADTDDEAEDHRTAPVVVRREPALGALGA
ARREPTLRSAVGSTLGSPLGSPLGASLGPARREPDLGPDLGPPHGPAMLR
HAEDGRPSAHSVSAANRRELDLERLETALQDLVACKQMLDSAFEDGSPSA
AL
>RPC_4118 transcriptional regulator, XRE family
MMYQTSSKPFMFAACLLSPASSSRILHVITSFQMRAARALLGIDQRTLAE
LAGVSVPTIQRMEASVGNVRGIVDSLTRVVEALNRAGVELIGEHTRSDDG
GRGVRLKQPGPPPPVGP
>RPC_1904 two component transcriptional regulator, LuxR family
MTTVLIIDDHPIVLQGCARILEANGPTKVLTAVSMVDGFRLYRQHDPDVI
IVDLTMHTGLLSGLSFIRRMRVVNRRIPILVLSMHRDPVIVSRALQAGAS
GYVLKDSAAEDLLKAIKRVSDGRPFISDELAADIVLMETRGQKHRLQTMT
LRELELLSILAEGKPYGLIAEELNVSYKTVANSVALIKNKLGVRTLPELM
RIAIDQLPSIETTAAPRR
>RPC_1993 transcriptional regulator, AraC family
MKYLNSDNPMLVSGSAASVFDPDLAKLPAVASQLDFARHQAEVPVHVHRK
GQLIVSLRGAVTCTADDRIWIVPPDCGVWIPGGVRHSARATGNARLIYLF
VEPGAARLPEDCCTLSISPMIREMVYRLAREGADYLPDSHAARLARVVLD
ELVEMPRERFSLPISNNSKIRAIADALTLEPSDRSTMGEWAKRVAMSERS
LARLMIRDTGLTFGRWRQKLQLVVALRELASGATVQNVAAELGYDSVNAF
ITMFKKALGSTPAQYFAQRRATMVQSQEARSATH
>RPC_0362 transcriptional regulator, LysR family
MVTLRQLRYLSALAKHGHFGRAAEACSVTQPALSMQIGDLERRLGVKVVE
RRPGEVLLTDAGREIARRGDEVLTASRDLVDFARHRGKPLTGRLTLGVIP
SLAPYLLPKILPALQRGYPELRLELRESQTRSLVGDIKSGVLDAALLALP
LEDSELDALPLFEDLFLLAVPADDPRPDTARIGARDIDQSRLILLEDGHC
LRDQALAFCATARRGRQQSSAGMTFGASSLSTVMQMVANGYGITLIPQIA
AEVERRDSRVRLLRLKDPQPGRSIGLVFRATSPRKADFTALGEVVKESVG
>RPC_1187 transcriptional regulator, TetR family
MPHAATAIRDPKENRKARQILDAARALFLTHGFDASSMEAIAREAGVSKA
TLYVHFASKDDLLLALVDDECRRLGPQTLWQPDGAIDVERDLQAIARGYT
AFFLHDRGRGLHRLVIGHAQRFPQMAEVFMIAGPLRCEAEVAAFLRAAEA
QGLLRIPDVPLAAVQFLNLVQGRLQLQWELSMEPPNAADYEALIEGGIRV
FLAAYGAPPRDEHRAGQHPVS
>RPC_3029 two component transcriptional regulator, winged helix family
MHVPQILIVDDDLEIRKLLARYIKEQGFRVQLASRCADVRERIATSQIDL
IVLDVMLPDGSGLDLCRDLRSERSKIPVILLTALKEEVDRIVGLEIGADD
YLGKPFNPRELVARIRAVLRRGQDDRSAHGGRERYSFEGFVADPFARSLV
DPQGRDIELTGAEFDLLRTFLDRPGRVLSRDQLLDLTRGREPDATDRSID
VLVSRLRRKLANSGLPHLFKTVRNGGYQLVAKVNYLED
>RPC_1740 sigma-24 (FecI-like)
MQGRDEEWTGLMRSANAGDSAAYHRLLKAVTPVLRAAARRGLARAGQPID
QSEDIVQDILLAVHLKKHTWDASAPFAPWLFAIARNKLIDALRRRGRRVF
VNIDDFAETIPSAPAAETLPTSEIASHLETLPARQRDVLQAIAVDSASIK
TTAAKLAITEGAVRVALHRGLSRLASKLRTE
>RPC_0794 transcriptional regulator, TetR family
MPNIANHPRKLPRQARSLATVGVILDATALLLVDEGYDKTTTNRIAERAG
VSIGSLYQYFPNREAVVAAVAQRVEAAISEPLWLALSQRHESDLRSEITL
GLRKSIGSHARVLPLLQILLELSSPPAAETAPAFRERQLILRNCLNAHAS
ELRSDFDVEAASFIIPRIVGSAIDAAILLRPATLANGDLERALNEMLSYY
LIGGR
>RPC_0597 two component transcriptional regulator, winged helix family
MPTIALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTSPPDLAI
LDIKMPRMDGMETLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIR
KPFSQRLLVERVKAVLRRAAPKDPAAVPKETDAKALDRGLLRMDPERHTC
TWKNEPVTLTVTEFLILQALATRPGVVKSRNALMDAAYDDQVYVDDRTID
SHIKRLRKKFKVVDDDFEMIETLYGVGYRFKET
>RPC_0841 transcriptional regulator, LysR family
MDFKQMQYFLCLAQEGNVTRAARQLNIVQPALSMQIAKLEKSVGKQLFYR
QAHGVALTAAGETLVKLAGSIMQNIDHAREEMARLDGTISGRVSIGMITS
AAQSTLAASSAKIAARYPEIQLLVCEGYTEMLLDWVAAGQLDIAIVNMPP
GKSTLTAHHILDEQMMLARRPGSALVLPAIVPYARLKDIDIVIPSRRHGL
RRILDAAAAEADFSLKPRLEIDTLSAICEVVATTDLVTVLPGIALHAALA
QGRLQAHRLKKPAISRAVVWTTHPRRIVSAAMTAVMEIISADLLAAAKQA
SRLTFTAPR
>RPC_4493 hydrogenase accessory protein HypB
MCAVCGCGQGTVEGQPLHDHDDLDEAAHAALHAAGTPHGHHHEHPHDHHH
ADHDHHDHAAVHYGVGEAGVSVPGLDQRQIIKLERAVLAHNDGLAEANRA
RFAQAGILTLNLLSSPGSGKTTLLCATITALAGRLPVAVIEGDQQTSFDA
DRIRESGAPAIQVNTGKGCHLDAAMVADAFARLDLAAGGVLFVENVGNLV
CPAAFDLGEAAKVVILSVTEGEDKPLKYPDMFAAADLMILNKIDLAPYVS
FNVERCLELAHRVNPRLSVLQLSATTGEGLAAWVQWIEARQRAIAASVAS
>RPC_4595 transcriptional regulator, LysR family
MESSQLRCFLEVAETLHFTRAAERLHLSQPALSTQIEKLERELGVDLFER
SHKKTTLTYSGTLYREEARKILALGSRAVERARQAAAGQIGRLRIGFIST
AAAYVIPQLVSDFRKQAPNVELDLRHYLTAQQVNLLCGGELDIGFLRIPL
REPRGLSTILVHEEPYKLFLPATHPLASQARLELQDLDGAEFVTYSKLNA
PGFAETLATVMLQAGIRPAATHEASDMYSLISLVSAGVGIAIAPASLQNY
RLPNLVIRDLQGIRPSEVALAHRDGIDHPAALAFIRAARVMSDFIKR
>RPC_3227 transcriptional regulator, PadR-like family
MDDNDGIGRRCGGMGCRRRGGRGAGGETIRVGRMLGQGDLKVIALALIAE
QPRHGYDIIKVIEEKTAGWYAPSPGVVYPTLTFLEEVGHLTSQPEGAKKL
YVITEEGAGYLADNRAVADAVFDRLAAVGERAAALRPRSEDAGRGNGEAS
ELPPLVRAALDNLRDVTGKQLAKDPEAEAELVAMLARAAGELRRL
>RPC_0415 sigma-54 (RpoN)
MALTQRLEFRQSQSLVMTPQLMQAIKLLQLSNLDLASFVEDELERNPLLD
RANENGEPPVPGELAPERAEFSDRDDAASGSGEDAGADGSDFSDRAAGDG
FEASAEDWMQRDLGSRAEIEQTLDTGLDNVFSEEPAETAARTAQDAAPTA
FTEWGGGSSNDDGYNLEAFVAAEITLGGHLAEQLAVAFTDPKQRLIGQYL
VDLVDDAGYLPPDLGDATERLGASAEQVEAVVAVLQKFDPAGVCARNLSE
CLAIQLRDRDRYDPAMQALVEHLDLLAKRDIGALRRICGVDDEDLADMIG
EIRHLDPKPGLKFGTARVQTVVPDVYVRPGPDGGWHVELNSETLPKVLVN
QVYYSELSKTIRKDGDKAYFTDCLQNATWLVRALDQRARTILKVSTEIVR
QQDGFFTQGVAHLRPLNLKAVADAIQMHESTVSRVTANKYMATNRGIFEL
KYFFTASIASADGGEAHSAEAVRHHIKQLIDGENPAIILSDDTIVEKLRE
AGIDIARRTVAKYREAMRIPSSVQRRRDKQSMLGNALTAPATTADRSRDT
APA
>RPC_1476 transcriptional regulator, LysR family
MRRKIPSNSALMAFEAAARHGSFARAADELALTEGAVSRQIARLESFVGV
ALFNRVGNRVRLAPNATRYAAQVREVLDRLERDSQDLMAQPIDGGSIDIA
AIPTFATRWLIPRLKRFQDKHPRITVHLAQRMEPFILAGSGFDAAIHFEH
PAWAGLHTHRLLQEVLIPVCHPALLADGEAEGALDRLPRLHRRQNPDAWQ
LYAQETGIRLRHPAVGARYDLHSMLIEAALAALGVALVPRLYVEAELEQG
RLVAPWPEGRSIAKTFCLVLPEPIRLSETPLQAFANWILDEAKTAERLA
>RPC_1360 transcriptional regulator, DeoR family
MAGLTHRQSEILNIARSFGRVMVDDLTRRFEVSAQTIRKDLNDLCDRRSL
TRIHGGAIIASGVENLAYEARRFVAAEEKKAIGAAAAAQIPNGCSLFINI
GTTTEEVASALTSHEDLLVITNNLNVAMQLYRHPRIEVIVAGGTVRRADG
AVIGSAAISLIGQFKVDYAIIGASAIDEEGALLDFDYREVQAAQAIVANA
RSVMLVADSTKLRRSAPVRIAHLSQIQTFVTDLALPDSLQSICDAKGIHV
ITALPKRPVESEEAVPELPMLRQD
>RPC_0478 NusA antitermination factor
MAAVSANKLELLQIADAVAREKSIDRSIVIAAMEDAIAKAARARYGSETD
VHAEIDAKKGELRLSRHMLVVEEVENSSNQISLKDAQRANPGAQIGDTIA
DTLPPLEYGRIAAQSAKQVIVQKVREAERDRQYQEFKDRIGDIVNGVVKR
VEYGSVIVDLGRGEAIVRRDEMLPREVFRNGDRVRAYIFDVRRETRGPQI
FLSRTHPQFMAKLFAQEVPEIYDGIVEIKAVARDPGSRAKIGVISRDSSV
DPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVSK
VVIDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTETE
ESERRQADFENSTRVFMESLNVDEVVGQLLASEGFTSVEELAMVDVRELA
SIEGFDDETANELQSRAREYLEQLESELEAKRKELGVEDALKTVPGVTSK
MLVKFGENDIKTVEDLAGCATDDLVGWSERKEGGEPVKFPGILDANEISR
ADAETLIMQARVIAGWITEADLAKTADATADADEASEDQPV
>RPC_2646 transcriptional regulator, LysR family
MDLAALAVFRTVATEQSVTRAAELLGRVPSNVTTRIQQLEAEIGVALFQR
DRRGMALTAEGKIYLDYADRILNLADEAQQVVHPTAPRGVLRIGSMESTA
AARLMQPLAKFNATWPDVTIDLSTGPTRPLVEALLARRIDCALVAIPDDI
GWLGEGELETVSVYQEQLILLLPPGHPEVEQIDDIKPRSLAAFAPGCTYR
MLAEQWLTGLGTRPAQIHFQEVKSYHAMVACTAAGSCFAILPRSVLDLIP
DAGRFTIKPLMTVDTVLASRPGFKTPAFVEFRNMLAAFS
>RPC_2721 transcriptional regulator, IclR family
MAKQTVKKPPVLKGVSAAERALAVLTAFRRGDGALSLAELAERTGLVKST
ILRLALSLQRYRLIARLPDGSYRLDAETLRLGTAYQQAFRLSDHVMPVLE
QLAAKTGETTSFYVRNGDERLCLFRVETTNRIRMAVQPGDTRPMDKSAIA
QTLRRYESGPPGPDDELPLFTSGVTDPHAAALAMPVFGIGESLVGALAIS
GPISRLTTARAEQAKAPLVEAAHKLTMACGGTVSSADAKRSRRKTNA
>RPC_0899 cold-shock DNA-binding domain protein
MAMTGTVKFFNGERGYGFIKPDDGGRDVFVHITAVERAGLKDLIEGQRIS
FEVEPDKKGKGPKAVNLVLS
>RPC_2994 sigma-24 (FecI-like)
MSGVTINYLRDLLLTDYRQLDRQLTRRFGSADFASDVLQETYLRLEAMTD
MVAVRSPKAYLLRIALNIANDRLRAESRRLTVDEADCLLDIPDDRPDAAR
VTEDRSEIILLRRAIAELPDRRRHVLLLSRVEGVAHREIAKRLGVTVRTV
ETDLKQAVAHCAQRLKRPLPPKCVLRRSDSSYI
>RPC_4546 two component transcriptional regulator, winged helix family
MSGVPIKVLVIDDEPPIRKLLRMGLGTQGYDILEASNGKLALELLAQQPA
LIILDLGLPDIQGHELLRIIRARDAHVPVVVLSSRGDEAGKVQALDLGAD
DYLTKPFGMEELLARMRAALRHQLQVQGERPVFHAGSLSVDLVRRLVKVG
EKDIKLSPKEYDLLRVLVQHAGKVLTHRFLLKELWNELTDAQYLRVYVRQ
LRQKIEPDPERPQFLLTETGIGYRLRAPD
>RPC_3418 putative transcriptional regulator
MKRRDFNCGPGCPVEVTLDLIDGKWKGVILYHLQEGRLRFGELRKKMPGI
TQRMLTKQLRALEDDALVTRKVFAEVPPRVEYALSETGLRLRPVIDALRR
WGEDHQARQAAGAQPSAAADADHAAVAADRSL
>RPC_0971 sigma 70 (RpoD)
MATKAKTLQTKDTKDDKVVDAPEKDAPDAPSPLLDLSDAAVKKMIKQAKK
RGFVTFDQLNEVLPSDTTSPEQIEDIMSMLSDMGINVSEADDADSDEEDA
KEEAEEEPDNELVEVTAKAVTETKKSEPGERTDDPVRMYLREMGTVELLS
REGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKIFLRDII
DLEATYAGPDAKNNMNPALIAPPAAADGEAADGAEAVAAPPAAPPSATPF
RAAPPPRPADEPKESSESADGDADDDEFENQMSLAAIEAELKPKVVETFD
KIAENYKKLRRLQEQDISNQLQNETLSPAQERKYKKLKDEIIVEVKSLRL
NQARIDSLVEQLYDINKKLVSFEGRLLRLGDSHGVAREDFLRNYQGSELD
PRWLNRVSKLSAKGWKNFVAHEKDRIKELRGEIQSLAALTGLEIGEFRKI
VHGVQKGEREARQAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIG
LMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN
KIVRTSRQMLNEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPLSLETPV
GDEEDSHLGDFIEDKNAILPIDAAIQSNLRETTTRVLASLTPREERVLRM
RFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFL
DN
>RPC_2735 two component transcriptional regulator, winged helix family
MNALILIAEDEPQISEILDAYLTREGFRTVRAGDGRTALDLHLALKPDLV
LLDVTMPRLDGWEVLAEIRRRGDTAVIMITALDQDIDRLQGLRIGADDYV
VKPFNPVEVVARSKAVLRRVGQSSAGRMLRVNCVAIDLDSHMVKIEAGGT
AQPLPLTLTEFRLLAHMARTPTKAFTRSELVDACLPGSDALERTVDSHIS
NLRKKLDEAGAPGMLSGVRGIGYRLASV
>RPC_2664 NusB antitermination factor
MAEMKKTIDNKPAPKGEKKANRRGAARLAAVQALYQMDVGGAGLNDIFAE
FESHWLGNEVEGDQYLPAEQAFFQDVVSGVVRDQAKLDPLIDVALAKGWP
LARIDAILRAVMRAGAYELEHRKDVPARVVVSEYVDVANAFVEGEETGMV
NAVLDQIARQFRADEFSRG
>RPC_4822 two component transcriptional regulator, LuxR family
MTPTPSTHLIIADDHPLFRDALRHAVASVVPTAKIGEAGTFEELTAILEQ
EADVDLVLLDLSMPGISGFSGLIYLRAQYPAIPVVVVSASDDVGTIRRSL
DFGASGFVPKRFGVEKLKDAIQKVLDGDVWVPPDIDLNAASDPEMTKLRD
RLITLTPQQVRVLMMLSEGLLNKQIAYELGVSEATIKAHVSAILQKLGVE
SRTQAVIAAAKISGSQWRQDTPQ
>RPC_3495 transcriptional regulator, LysR family
MTRPRLPSLIALRAFEAVGRTGSVRAAGDELAVSHTVVSRHLQNLQKSLG
VVLVRGEGRGVMLTSAGLAFHSQISQAFDIIARATMSARPTPRPTLNIWC
IPGIANRLLLSRLPELTGPPRNWEVNMQPTLSHPDLARGEADAEIVYADV
VASPGAVMAEALVRPRVFPVASPAYLARYPAISSLEDLSEIALIHEESTA
QWGRWFELAGLADLPPLSGQRLWHAHLAIEAARLGQGVALGNDVLVEDDL
RSGALVEVISSSVYMETYQLVALKERWSDPAIVALREWLKRVLVGR
>RPC_3551 GCN5-related N-acetyltransferase
MAFRIEKLRRDHRVEGFDCGKEPLNRFLIRYALQSQLSNSSQTYLALSQD
EVVGFYTLAFGDVSYEGAPERLRKGVARHPIPLMILARLAVASAWAGKGI
GSGLLKDALARTLAAAEIAGLRAFAVHAKDDEARAFYERFDFIASPSDPM
HLFVLLKDVRGLIGR
>RPC_1922 transcriptional regulator, LysR family
MRPLPNLRQLRYLVALADQLHFGRAAESCAVTQSTLSAGIHELEVLLRVA
VAERTKRSVILTPIGHRLVERARLLLRDAEGLMDLAADASEPMSGMIELG
VIPTISPFLLPRLVPHINRQYPLLRLTLREDKTLALLDWLGAGRLDLVLM
AFPYDTPGCETFMLFDDAYRFACSTRHPLAKAELVNVHTLDGEALMFLEK
EQCLHSHALPLFEIAPEQAVTSFAATSLHTLVAMVAENLGTTLLPDLAIN
GGILQGSAVAIRPLAGDANNRQIGLAWRKQSARSDAFIRLGHLLRDWAAV
NVRAFKER
>RPC_0854 transcriptional regulator, LysR family
MTRKLDLNALLLFFEVTNARSISAAAAKLGIPKSTISRKIQFLEDQTGAT
LFRKGCRKLTTTDIGQTLYEHCERIAAEIEEAGLGTARMQTELRGTLRVS
MPVDFGIGWLSSAIAAFAVTYPDIHLVIDANSRWVDVTVEPYDVAVQLGP
LPQTQGGTRPLASITRGVYASPEFLRRAGSPLNIDDFGRFDCVVTEHQRA
EGVWNFRSAQGAKVINVAGRITVNHIGIARELVIGGVGLGILPNIMCQND
VRAKRLSRVLTDWESPALQVSATFPGKRKESRRLRTFLDFLEQKLKIEGD
PRARSPAARPAGS
>RPC_0733 transcriptional regulator, MarR family
MDHAMKRKPSTEATAAWIRLMRIQSRVLDAVEQDLKKAGFPPLAWYDALV
ELSRAPSGELRPVELEKQMLIPQYSTSRLIDRLVDEGLAARRECKIDKRG
QFVEITEAGRELQKRMGSAYSATIEKHVGSKLSDADAAKLCALLDRLGCS
CDAVQAAGKDAAAAR
>RPC_0172 transcriptional regulator, AraC family
MQRPAVALAKSTNPIDYQTAARPIVAMPKEFAAGSLIASHHHARAQLIYA
VSGVMEIRTKAGLWLVPPQRALWMPAELDHAMRCRGAVSLRTLYLRADGC
PADAPAAPRVVQVSILLRELILRIAGMPLDGDASEHDGRILALLFDEIGW
APDQELFLPMPRDARLARLCEEIVADPGDTRSLAQWAGVAGASSRTISRL
FRQQFGCSFQLWRQQAKLLAALPRLAANEAVITIAGDLGYETPAAFAAMF
RRLTGTTPSRYFG
>RPC_1031 transcriptional regulator, MarR family
MARNTKTASDNATTKIELANRLFFRLYQCANMLHKTGTRAVEAEGITTQQ
WAVLGALSRPAAKEGMSIGDLARYLMVSRQNLAGLIGRMERDGHVEILPD
ERDRRSRLVTMTDRGRHVWHVLAQPKIRAYYDQVLADFSINDTTHALHYL
LKILDNMKRIDEGAPDVDPDRNI
>RPC_3694 transcriptional regulator, AbrB family
MSYKASATVTSKGQITLPASIRERLGVTAGDRLDFDLSASGRLTVTAVKR
RSIFENFDELQLPSRGRPSTRKDIDDAITATIVEKFPRPGRRRG
>RPC_0160 putative transcriptional regulators, CopG/Arc/MetJ DNA-binding domain
MASYHIGKHFEDLIDELIKSGRYASANEVICDGLGLLEDRELLRAAKIEA
LRVEIQKGIDSGPGREIDGKTLAEEIKARGRQELAAAEQELAAAKHGS
>RPC_0435 conserved hypothetical protein
MSTAVMKILNVLRDEGGLQGKDIANIVAVSPATVSRWSSGKATPDLKTQT
IIAELRYVVDRLAEFYTADETRLWLHTPHPMLDGEKAIDLINAGKTELVL
GIIENLDSGAYT
>RPC_4053 two component transcriptional regulator, LuxR family
MPPRGNVYVIDDDPAMRDSLEFLLSSVDFEVVLFESAVAFLEVVETLEFG
CVVSDVRMPGIDGMDLLKRLKANRNPLPVVIMTGHGDVPLAVEAMKLGAI
DFIEKPFEDDRLIGMIETALTQPKDGVRSDAIAPEIAARIETLSPRERQV
MDGLVAGLSNKVIAREFDISPRTIEVYRANVMTKMQAGSLSELVRMAIRG
GALKD
>RPC_3614 transcriptional regulator, AraC family
MTSRASTTIRSSLQREGERFPLFSGAMVVSAGITQFDQPKRVNAELVAGV
KTVMLLSGRLRIRIGDGGEREICGPAVLMIRSCGGGQRDQVFAADVPVRY
VIVQLDEKLLGTEIAAAFDRSPLRATCRGAAGAVLLSSSAGNELQALATQ
IMNCPIRGVERELYIGGKAMQLVALALSSCISEADDGDGHQFSSKDVDRI
RQARDLLVASMRNPPSLELLAQKTGLNVRKLNLGFRRMYRATAYGFLQEY
RLEQAYKLISSGEMSVSQAAYHVGYGAAHFATVFRKRFGVSPSRLR
>RPC_3514 transcriptional regulator, XRE family
MKKTFLGVRLKRLREEHRLTQAALAAKLGISLSYLNQLENNQRPLTLPVA
LALNKTFGLDIQSFSEDDEARLIADLREAVADPALGETIATSDLRELALN
MPAIGRTLVALSQRYRQAIEQSAALSARLGEDRQAASAILPSTPFEEVRD
FFYAQHNYIPELDEAAEAIALRMNLPPGRMAPALSSFLEDRGMTILIGGS
TESGLQREFDRQTRTVRLSSSLHPGQQAFQLATHIAFLDFDDAIRSIVSN
AAFTSDESRGLARIGLAHYFAGALVLPYSAFLQEAQRRRYDIELLGHTFG
VGFETACHRLSTLQRHNARGVPFFFIRVDRAGNISKRQSATDFHFSRVGG
TCPLWNVYEAFACPGRILTQLARMPDGRTYLWIARTVSHSQGGYRAPGKT
FAVALGCDVRHAGSVVYSEGLDIDPAIATPIGMGCKVCERPNCPQRAFPP
IGHALNVDETRAHFAPYATSS
>RPC_0745 transcriptional regulator, LysR family
MLDLELLRSFVAVVDAGGFTRAGARVHRTQSTVSQQIKRLEDDLGQALLN
RTGKDVTPTESGERLLSYARRLLSLAEEARDVVARPNGEGAVRLGIPEDF
AAYRLTKLLASFARSRPGLRLDVRAAQSVDLKRDLERGDLDLALLKRAAE
GRDAIAVWPERLHWITSGSHPCDANAASLPLIFFPTGCLYRARAIHAIES
AGRRWHMAYCSANLAGIQAAVAAGLGLSILPAIAIQPDHRRLTAKDGFAP
IDSTELALVASPDASPATLRLADRLAEFCDAIQAKAA
>RPC_2016 transcriptional regulator, AraC family
MYGPTSQEKRVAETRMPNLDVIRLQASRRSWVSIGGSDPNTPMALKLIEP
RFSEVDDDQMRFEKWQQLTSSLFVASKKSPMVGSRDLSFRCYNLDRLLFF
DHSAGAYGAERTPSQIVTQGVDHILLGLQTVGTTLLMRSDGVAMAGVGDL
VVLDLSQRFQFATEGMSAIHICLPRRRFENHARKMGARHMQILRSEGEPL
LKLMADHLLNMRTCLHHAVAEQLHLLTSAAIAICNAAFTPPEDSSYNEPA
VAAIEVRQFIEENIQHQDLGIELLCARFGLSRTPLYKLFEVDGGIVSYIR
SRRLARAMLMLSGVEGRSHQRVSSVAYACGYQSAKMFSRAFHRRYGVNPR
EVNRTYQTVAIQEKGALLASWIQNL
>RPC_0488 transcriptional regulator, MarR family
MPRGSVDLNFLFTLAEVQRLVRCYADKAASRYGITRAQWAVLAKVERCEG
LKQSELAEMLEMQPITLTRLIDRLCEHGWIERRSDDTDRRAKRLYLRKAA
RPLLGKLTGLRSELTATALAGISPVDVHRLVGHLETIRENVRTAIHDAHA
APQRKIQRHG
>RPC_4713 transcriptional regulator, MarR family
MSLDPDQHDDTDALALAHDLRLVIGQLKRRLREQAYLGDLTWSQVSVLGH
LDRQGPATVTALARAEGVRPQSMGATVAVLEAAGLVGGAPDPDDGRQTIL
SLTAACRDLIKAGRAAREDWLLRAIQTTLSAEETAQLAGAVALLKRLAAS
>RPC_1442 putative transcriptional regulator, AsnC family
MIPFFVQFKCKLGQSYAVANALAEAEIASEIYSTAGDYDLLVKFYVDRDT
DIGHFIAEKVQVIPGIQDTHTIITFKAFGGK
>RPC_3501 transcriptional regulator, LysR family
MTRSPSRQPLDLNLLVTLDALLSEGSVAGAANRMNLSPPAMSRQLARIRH
LMNDPVLVRAGRGLVATPRAEAVRAQVRQLVQDAEGLVRGNADLDPATIE
RTFTIRSSDGFVGTFGAAIVELVVQQAPNARLRFVGEGNEDVDSLRDGRV
DLDIGVIDGMGPEIRLQTLFRDRYIGVVRADHPLAQETVTIENFVAYPHV
SVSRRGRFEGPVDTALALQGMRRTVSVAVANVADGLSIVSRSDHIVLLPG
RIAAWYRRDFHGFELPVVTDELPPISIAWHPRFEKDAAHRWLRTCVREGA
L
>RPC_1387 transcriptional regulator, MarR family
MADINFANPSSRSGHPEAGPSPLSDGASPRWDVIELLFFAYRDFVGDADH
ALEGLGFGRAHHRVVHFVHRYPGLKVADLLEVLRITKQSLGRVLKQLLDE
GYIVQKAGDSDRRQRLLFSTAKGEALVVKLARLQTDRINHALADLGPGET
DAVLRFLRAMIDRDDPDKVLEGLLGTNGATAKDRR
>RPC_3837 transcriptional regulator, AsnC family
MSKNLDEIDLKILGEIQADGRITNVELAKRVGISPPPCLRRVRTLEEEGY
IQGYRGLLDPGRLGFDVTVFASVHLASQAEADLRGFEEFVRNQPLVRECW
MLSGEVDFILKCVAPDMATFQHFVAHLTAAPHVRNVRTSLVLRNSKYAAA
VPLELKVS
>RPC_3098 transcriptional regulator, IclR family
MGRRSERLSKQGLIAGDLSGADDVIQVVSRAFDVLRCFDGHEARLGNLEI
SNRCGLPRSTVSRLTHTLTRMGQLAYLPRDQKYRIGPSAVAMSTAMMCGL
QLRHLIRQRLQEVAETVPGTIGFLLPDRFHLVYLEFARAPHALGLHSITG
SRIAMTRTAAGHAYTAALDEDVASALLAEMEREIPHDAQVLRARLEGNRA
MLRERGYVTACGLWSPHINGIATPMWSPQYQTNVVVTIGLLSAMYDEQRM
HDEVGPELKKLAASISTLIQNAEGGLYDNGSELTLRPAMPHKTVTTGEMY
GLEAGARRVGPPRSLRAADGGRR
>RPC_1326 transcriptional regulator, LysR family
MAKLFRTVSIRQLRALAALAGSGSITAAANKLHLTQPAVTLQLRNLQALA
GLPLIQRKSDGMALTDAGAEVLALCERIEAAIAACETSLDMIAGKTAGRI
SIGAVSTAKYFVPFMISAFQKLHPKIDVKLSIGNREEVSNALKGYELDIA
IMGRPPVGIDMDVHLIGDHPHVIIAPTAHRLARKHRIALGELAKETFLTR
EPGSGTRSLMEQLFEAANIRPTIGMEMSSNETIKQAVIAGLGIAFLSAHT
VATELDERRLVILDVVGLPVVRQWFVLSRKDKVLLPPARAMLDFFSAKGA
QFLPRTQGRMRLTRTSAKPRRH
>RPC_0094 two component transcriptional regulator, winged helix family
MSQNPNIIVVDDEAPAREMVGDYLKMHGFTVTLCDGGASLRAAIEIAVPD
LVVLDLNMPEEDGLSIIRDLKARTNVPVIMLTATASPIDRVVGLELGADD
YVAKPCELRELMARIRSVLRRSAPAKPAPAPVAAAVMPAKEHLVRFGTKW
LDLEAQALRDDDGNEHPLTASEFGLLKVFAANPKRVLSRERLLELANARD
AEAFDRAVDLRIMRIRRKIEADPTKPAVIRTIRGGGYLFSPSGERA
>RPC_0605 sigma 32 (RpoH)
MARAATLPVLNGESGLSRYLAEIRKFPMLEPQQEYMFAKRWREHDDRDAA
HHLVTSHLRLVAKIAMGYRGYGLPISEVVSEGNVGLMQAVKRFEPEKGFR
LATYAMWWIKASIQEYILRSWSLVKMGTTANQKKLFFNLRKAKSKISALD
EGDMHPDQVKLIAKRLGVTEQDVVDMNRRLGGDASLNAPIRDDGEPGEWQ
DWLVDHSPNQEAIMAEHEELDHRRAALTGAIGVLNPRERRIFEARRLADE
PMTLEDLAAEFGVSRERVRQIEVRAFEKVQSAVKGTIARQEEAALQAAL
>RPC_3796 two component transcriptional regulator, LuxR family
MTNTSGREIFVVDDDPAVRETLSIVLSAAGYQSICFADGEALLAVARSRC
PACILLDVHIPGRSGLDILEELHAEDYPAPIFMISGKGDIAMAVNAIKNG
ALDFIEKPFRGPEIVTRVEEAIEAFTRRRAAGLVPKVPSLNFPGREPLTM
REREVLELFSSGNTNKEAGRQLGISPRTIEYHRANIMKKLGAKNATDLVR
IVMAAVPRA
>RPC_2354 GCN5-related N-acetyltransferase
MNDAAIAGQTAAKCRVRSLINQELPLLKDHLMRLDPESRRDRFNGYADEG
FIERYSAKCAGDGTIILAYFAEDGAVHAAAELHQPDLSSDSLPEIAFSVE
ANLRRKGVGSTLFKQLIAVASSLGYERLRITTGSQNQAMRALANKFGAHL
TFRRGESTGTIDLNPNVDAPNLAADGRELDVKEEVPADAAKALIDFNQAC
WKLFLRMSGFGKAA
>RPC_3587 transcriptional regulator, TetR family
MRRTKLEAETTRETILAVAERLFLERGVTEVSLEQIAVAAGFTRGAVHWH
FQNKQGLLLALLDRMGLPLEQLAGQLEIDDTLDPMDELVRDMTGRLCELE
MDPKRKRLSTYLVNFAAVEAPERQRNFDRKFRSSVTIIFRLAEKRGRLAP
HWRPEIAALAFCGMVMGLINQWLNGETEFDMRNDVTAAVRAFSSSLRAQP
DDPKRPGA
>RPC_2243 putative transcriptional regulator
MTAKTAQEGTVLKLEHSDLPGHSDVTAPQASIHNDCRGVATVLSRVGDKW
SVLVIMMLGERPLRFNELKRMIGGISQRMLTLTLRGLERDGLVTRTVFPT
VPPRVDYELTELGRGLSAPVKELGQWAKQHLPDIEGARESFDRRRSAEQA
>RPC_0993 phage transcriptional regulator, AlpA
MPEPDRIIRLKTVLARAGLSRSTIYRKIAEGTFPAQLRISSNGAGWRESE
INRWVANPVAWRPRGDFE
>RPC_3079 transcriptional regulator, LysR family
MAITLKQIEALHWVVQLGTFDRAANRLHTSQSAVSKRIMELEAAVAVPIF
DRSQRGARLTEQGEHLLALSQDMLNLQDRIMALKDAGTMPARRLRLGITE
LSALTWLPRLISVLRETFPTLDIEPDVDTSRDLYARLQEDELDLIVIPEC
FVDPEITSDRLAEVANVWFARPGLIKSRRALTLEELATYPVLIQGRRSGS
GLFVNKWLKSQGVVFPRVLSSDNLTTVLALAVAGLGIGYLPRQCFRTMVA
EGKLVAVPTKPALPLVPYSAMYRNDRPSMFIAKVVEIAKEVCDFSVQFQA
>RPC_0799 GCN5-related N-acetyltransferase
MTQGFRLRRYQAVDEDASIALWLKTWQLAYPSIDFAKRLDWWRARWRNEL
VPNASIVVAEQADEMTGFVTIDGGGYLDQLVVAPEQWGSGLAAALVDEAK
RLSPTGVTLKVNADNFRAIKFYQRNGFVTTGEELNASGRAVLNLAWTP
>RPC_4091 transcriptional regulator, MarR family
MPSRKNVQNTHNSERLRVLHGALLDIVSAMNQPHRDEAMIRTAGIPLDRA
LFPLLVLIERFGPIGVVDLADRVGRDYTTVSRQVAKLESLELVQRRDNAA
DRRVREAIVTAKGKAMTDLVDGARERIARGIFASWEPREFDELVRLMRKF
ADAVSRDPPAE
>RPC_2962 transcriptional regulator, MarR family
MLPLWQHTVMITSVSPPFDHPVNALVLEVFRLNGALIRHGDALVKPLGLT
SARWQVLGSIAHGQGTFSVARLADNMGLARQSVQRIVDELAAAELVSFAV
NPAHKRAKLVVMTPRGQRVFARATQLWTPVADALVTGLDPRQIRKASDTL
AALRGRLDDQPNDRSSE
>RPC_0865 sigma-24 (FecI-like)
MAFALDIWAPVEVAPAVIAKSTSVSSAPAAACEQQLPTPPLDEDEQLLNR
LAEHDEAAFRLLVERHIDRAFGIALRIVGNRADAEDVVQDTMLKVWTHRG
QWQHGRAKFSTWLYRVVTNRCIDLHRQPRTDCVDAVPEPADGRPDVVSTM
QRDEVTHLLENAMRQLPEQQRIAVIFSYHENMSNGEIAEVMETTVAAVES
LLKRGRQQLRDLLRRHERDIRHVFTEY
>RPC_2088 GCN5-related N-acetyltransferase
MPRPALRPFLPADTAVLSAIFAASVEELTAEDYNEAQQQAWIAAVDDEAA
FGERLGSQLTLIATLQSSPVGFASLKGADLIDLLYVHPSAALQGVASLLC
EALEKLAAARGAKLLTVEASDNAEPFFAKRGYVATQRNTVTLNGEWLANT
TMQKNLADAAAAGAKS
>RPC_0847 transcriptional regulator, AraC family
MSTALRIAHGEFGRVALLDMDCSLVRHAHPHCHVLLKVEGADTQFAVGDQ
VYPLTDSSAVLVNGWQPHAYVHDPSRPCTLILALYVEPQWLKRFRPGWAA
SGAPGFFSQPSGEISPRIRNLSMALAAEMMSRPDSVSAHETLLSDLMVAV
IERFTPWRSFPASIREMAVTGRDWRIRRAIDAMRAEAGHASNMDKFAKAA
GLSRAHFFRLFENSEGMPPKVYLNVVRMEHAVQAVLHQDASFAEIGERLG
FAEPAHFTRFFRNHSGVGPREFRNVSRLAS
>RPC_2215 putative transcriptional regulators, CopG/Arc/MetJ DNA-binding domain
MNMNVSLTDELGEFVKSRVSSGRYTSASEVVREALRLMERHEQTEAAKLQ
WLQQAYREGSASGDAGEIDFAAVKAEARASMSEKAK
>RPC_0280 two component transcriptional regulator, winged helix family
MPNARKILIVDDDNDLRDALVEQLSLHEEFEASAVDTGAKGVIAAKAESP
DLVLMDVGLPDTDGREVVRSLRKGGFKAPIIMLTGHDTDSDTVLGLESGA
NDYVAKPFRFAVLLARIRAQLRQHEASEDAVFTVGPYSFRPGSKMLTGAN
AKKVRLTEKETAILRFLYRSGLSPVSRETLLQEVWGYNSGVTTHTLETHI
YRLRQKIEKDAANPEILVTEAGGYKLVP
>RPC_2320 cold-shock DNA-binding domain protein
MQKGTVKWFNPTKGYGFIRPTTGDKDVFVHISAVERAGLSTLNENQTIEY
ELVENRGKTSAENLKIS
>RPC_0740 transcriptional regulator, AraC family
MVDRTMPILTDSSVASDWIEPDEVARPVVTYGMASNKIVTFELDAHRHAK
GQIMLVQRGALSCQVEGGLWIVPPRSAVWIPSRALHAIKATGSLEGYSAF
VAAGFDTGLPQRCCTVAVTPLLRELLFRAARLPLFYDEGGANSRLMAVLL
DEIATAQVEDLHLPMPTDARLCALVDLMMAAPAERGSLEGWAQRAGLSER
TLVRLISRETGMSFGRWRQQLGVMLAVQWLAGGASIQQVAADLGYESVPS
FVTMFRKTLGTSPGRYMAERYSGRSFESR
>RPC_3936 helicase-like
MTGRPDTASVLAGLKDFQRTTVDYVFERFYGQQPTRRFLVADEVGLGKTL
VARGVIARTIDHLWSTVPRIDIIYICSNVDIARQNVQRLAIPGCEVAAQS
TRLTLLPLHMHDLRRHRVNFVALTPATSFEQTGGGGRIDERVLLYWLLDR
AWGIHGSRASLYVMQDYASTASFERAVDAFDPAMVNEQIAAEFVSRLAEQ
VQEEKAAKTPDMRQRFEVLCRIFCRSDARPEPGATKLRTQWIGELRWMLA
RVCLATLEPDLIILDEFQRFKHLLEEESEAGELARDLFDSQSEHGARALL
LSATPYRGLSLHHEIDDDHYGDFLTLLRFLENGDAAGCKQVLADYRDALP
AIMTPEGLAQLRSAKEALEQRLRRVMARTERLATAGQRGGMLLDSPPADG
SLHTVDVRAFLGAQRIADSIGQGDLVEYWKSSPYLFNFMDSYALKDAFKK
AADTSEIVKFVREFPDTFLDLEKARTYQPLEPANPRLRGLLAETVDRGMW
RLLWIPPSLNYYALAGPFAAPELAKLTKRLVFSAWHMVPRAVASLVSYEA
ERRMMRAPHPRARLTQEDWKKQRGLLRFGTSADRLTGMPLLLLVYPCLTF
ARHCDPRDLARGRSLTASEARLELAARLREMVEGLGIAYETGGNADERWY
WLAPMLLDFAEFPAAAQAWWERTELAQIWAGAEAGEEDAGWSRHVDEARE
TLNTIRDGKQRLGSPPEDLIDVLSLAASAAPATAALRAYVRTGEKDTAQS
LSLRDTAARSGRAFLSLFNHAEVTETIRAEFRGEPYWLRVLEYAHNGGLQ
AVLDEYTHLLRESLGCADAPVSAMAEKVAAELIGALTLRTASLRVDEISA
PPYAREAKIKSEPMHIRFAMRFGDERYDEEAEPGGLLATAGTRKERVRAA
FNSPFWPFVLVSTSVGQEGLDFHHYCHAITHWNLPSNPVDLEQREGRVHR
YKGHAVRKNVAAAFATEALDRPASDVWETVFAIGRANRPSQENDLVPYWL
FPGDAKIERHVPALPFSREAERIHGLRRSLAIYRMVFGQSRQEDLIAYLL
AHIPEQDRAGIMAELQIDLSPQSRTQANE
>RPC_3790 two component transcriptional regulator, LuxR family
MDQKASPSRLRIFLADDHPVVLSGMKTLIAADDGLEMVGEATDGPEALRS
ALELKPDVAVFDLSMPGMNGIDVAQKFLAARPDARVLVLSVHEDGVYLRR
LLKLGVAGYILKRSASDELIRGIHAVANGGIYLDPAIAGQALGRPAPMAP
AGNETSAISELSTRELEVLRLASVGHSNKVIAIRLQVGPKSVETYKARAM
EKLGFSSRVELIRFALSMGWLDAADL
>RPC_2798 transcriptional regulator, TetR family
MTVRTVFKSAECSSAPTMSVNGETDETRRMARVRTETKRDAILETAAQVF
QERGLEGASMSEIAKRLGGSKATLYGYFPSKEELFVHVALRVAGQQILVM
LKGLQDRAAEHPRTVLLDVGKELVGRVLAEDATTAYRLAVSYGRVGNLGR
IFYEAGPGKAIEAFTRYFEAATAAGRLAVVDIDAAAHHLLALLESEITYR
RTLQFGDEITRDAIDKSVGRAVDVFLAAYVADSRLTPQKPSRQSQSVKKT
A
>RPC_3985 transcriptional regulator, XRE family
MPEANPLGTYLKNRRTKLDPAALGFAGGRRRTAGLRREEVAQRANISATW
YTWLEQGRGGSPSADVLDRIARALTLTAVEREHLFLIGLGRPPEVRYRGS
DAITPRLQRLLDTLTLSPAIVRTPTWDVVAWNRAAVAVLTDYGDLPPDRR
NILRMIFCDPDVRERQADWNTVARFVVASFRIDAARAGAGTEVAALVEEL
SVASPEFAAMWRDSDVQTQAGGMKQLLHPQVGPITLEYSAFAVDGRPDLS
LIVYNPATPADRKLVETLIERLPAETKAD
>RPC_0786 transcriptional regulator, LysR family
MTRLPDFEGLAIFAKVVELRSFAATADELVLSKATVSKAVTRLEQKLGAR
LFNRTSRRLALTDAGHRLAERATRLLADGEAAENEALAQSGAPRGLVRLA
VPMTFGVKVIAPLLPEFMQNYPEVAIDLHLSDATVDLIGDGFDAGIRIAT
LPDSSLLARRLCAMPRFTVAAPSYLATYGRPTHPMHLAAHRCLGYAYLST
PNTWHYTNAAGEQADVRLSGPLRVNNGEALLPALLAGLGIADLPEFIVGD
ALASGAVEVILQGWHQREGAVHLVMPPGGPRPARVEVLAEFLAEKLGRRG
R
>RPC_0118 transcriptional regulator, IclR family
MSEQGSGGVHSVQLAIDVLEAVAFADEELGVTQIAERLSMTKGSVFRHLQ
TFVDRGYLTQNPTTSRYAIGPKSRLLARHAPEADLVHLAEGPMRQLRDAL
GHPVVLSEMTPRGALVLHTLSGTAPIEIGVRSGSELTFHASAQGKVMLAF
APAPFQARVLARPLQRYTDKTMITTRRLEKELVKITSLGFASAPEENMLG
LNAVAAPIFDAHDACIAAVALVGSIQFLPEKPRPSDVTQLIETARQISRK
LGHGNRSGEPPTAAKRRPRTAGV
>RPC_1994 transcriptional regulator, LysR family
MARVELAELAAFVAVADHLSFTRAAHQLGLSLPTVSLTVKALEDRLDVRL
FNRTTRSVALTEAGERLLAEIQPLLQGVDDAIESVNRYRDKPIGTLRLAV
SRTFATRVLAQLIKPFLDEYPEIRLDLEIDDTNIDIVRHRFDAGIRVGDM
VERDMKVISVFDPFRLIVVASPVYLAGKPAPVRPEDLRGHNCIRYRLPHD
GSIQRWIVERSGRQTEIAVEGSLIVNDFDLMMGAALDGVGVAYLSEPLIQ
GALADRKLIRVLPGWGHTLQGIYLYHPSRRQVPMPLLVFLRFIKEWRKTK
>RPC_1287 transcriptional regulator, GntR family
MTTLDQDSGVALWRRVADSIERGIADGSYPNGERLPGEVEIAEAHRVNRH
TVRRALAALAERGLVRAARGSGTYVQASKLSYPLHARTRFSEIVGAGGRE
PRGQLIGSSDDIASRDLARQLGVKLNAPLVRLETLRLADRVPICVGTTWL
SAARFPDAAAIYQRTGSMTKMLAHYGIRDYRRGVSRVTAGIVDASDAGRL
DLELGRPVLVVDSTDVAPDGEPLQTKHSRFAADRVEFVIENE
>RPC_0326 negative regulator of class I heat shock protein
MAHHDPIGLIAPNAGLAQLNERSREIFRQIVESYLATGEPVGSRNISRLI
TVPLSPASVRNVMSDLEQLGLIYAPHTSAGRLPTELGLRFFVDALMQVGD
LTEPERQSIQAQLASVGRAQSVEAALGEALTRLSGLTRAAAVVLTAKSNA
RLKHIEFVRLEPERALVVLVSEDGQVENRVLTLAAGVPSSALIEASNFLN
ARIRGRTLAEARLELETALSQDRAELDQLTQKVISAGIASWSGGANDDRQ
LIVRGHANLLEDLHALDDLERVRLLFDDLETKRGVIDLLGRAESAEGVRI
FIGSENKLFSLSGSSTIIAPYSDGAGHIVGVLGVIGPTRLNYARVIPMVD
YAARVVSQMLGG
>RPC_3135 transcriptional regulator, MarR family
MPTLRTAHDEEGDLAASTESRGPAEAAEGHRDFGLSHQIIWDFVSISNHL
EDIRRSWAKLFGISGSQWLILMAIDDLDQGGGVSVGDVSAKIHAVSTFVT
TQTKVLERLGLINRVTSAADGRVVLMSLSDRARQQISDLSARWEALHAFI
FRDFDAQSMNDVKSKLEMLKKRAKIAVARVAVES
>RPC_1869 transcriptional regulator, TetR family
MRSPPHALDKPRQRGRPKLMPDDAQRRLIADCAQELFLEKGYGRTTTDEV
AARCRISKHTLYRLFPGKPALFAAIVELHRQAMLALPGDYDGLPLDRALE
RIFMIDIDPQADKQRVALLRLVMLEAHQSPELGEIIRRHGADKSRAELAN
WLALQAKSGVLVIDDPDSAARILMDMIFGAIAFKAIDNLSWPGDEDRNAH
IRRCIAVFLNGVRPR
>RPC_4109 GCN5-related N-acetyltransferase
MHAASPITIRPARRDDVAAIVAMLADDHLGRGREVVADPLPESYYAAFDA
LQGAPHIQMVVATDGSDAVVGCLQLAVLPGLSSQGASRGIIEDVRVAGDH
RSQGIGEQMVRWAISEAQVQGCKLVELFTHQSRVDAQRFYARLGFQPSHV
GMTLRF
>RPC_4087 transcriptional regulator, LuxR family
MPLKRQELPGGAARPAPAAIQSNAAIAEQLVGPLTALLQFMQDLKTLTGA
DPGIAPADTLVDDALRETQRVCAIVEGLGVRPVPPADATLVPGQDQGASA
WWARCIDAAGETPTATGRSIRHRLTPREREVLKLISGGSTNKEGALQLSI
SPRTYESHRAQIMRKLGARNAADLLRKVLAEVR