Gene list
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COG category: Transcription
Organism: Rhodoferax ferrireducens DSM 15236, DSM 15236
Number of genes found: 248
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| Rhodoferax ferrireducens DSM 15236, DSM 15236 | ||||||||
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| Name | Locus tag | Product / Description | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | Rfer_4234 | RNA-binding region RNP-1 | chromosome | CDS | 4701545 | 423 | + | 0.65721 |
| NA | Rfer_1883 | transcriptional regulator, BadM/Rrf2 family | chromosome | CDS | 2019779 | 510 | - | 0.572549 |
| NA | Rfer_3520 | transcriptional regulator, TetR family | chromosome | CDS | 3916266 | 711 | - | 0.596343 |
| NA | Rfer_3931 | SNF2-related | chromosome | CDS | 4389552 | 3537 | - | 0.65253 |
| NA | Rfer_3712 | anti-sigma-28 factor, FlgM | chromosome | CDS | 4144423 | 327 | - | 0.605505 |
| NA | Rfer_1486 | two component transcriptional regulator, LuxR family | chromosome | CDS | 1599455 | 645 | + | 0.606202 |
| NA | Rfer_2112 | transcriptional regulator, LysR family | chromosome | CDS | 2289028 | 954 | - | 0.583857 |
| NA | Rfer_2806 | transcriptional regulator, GntR family | chromosome | CDS | 3104655 | 648 | + | 0.611111 |
| NA | Rfer_1692 | sigma 32 (RpoH) | chromosome | CDS | 1820778 | 942 | - | 0.606157 |
| NA | Rfer_0503 | two component transcriptional regulator, winged helix family | chromosome | CDS | 521756 | 684 | + | 0.644737 |
| NA | Rfer_2278 | transcriptional regulator, MerR family | chromosome | CDS | 2499928 | 822 | + | 0.542579 |
| NA | Rfer_4133 | transcriptional regulator, MarR family | chromosome | CDS | 4607309 | 435 | + | 0.521839 |
| NA | Rfer_3144 | sigma-24 (FecI-like) | chromosome | CDS | 3482566 | 564 | - | 0.588652 |
| NA | Rfer_1539 | two component transcriptional regulator, LuxR family | chromosome | CDS | 1656509 | 693 | + | 0.637807 |
| NA | Rfer_0474 | transcriptional regulator, LysR family | chromosome | CDS | 489734 | 885 | - | 0.566102 |
| NA | Rfer_4161 | transcriptional regulator, IclR family | chromosome | CDS | 4631531 | 744 | - | 0.606183 |
| NA | Rfer_3591 | DNA-directed RNA polymerase, subunit beta-prime | chromosome | CDS | 3997240 | 4218 | - | 0.572309 |
| NA | Rfer_4103 | transcriptional regulator, TetR family | chromosome | CDS | 4578201 | 651 | - | 0.715822 |
| NA | Rfer_0627 | metal dependent phosphohydrolase | chromosome | CDS | 650058 | 1263 | - | 0.618369 |
| NA | Rfer_1712 | transcriptional regulator, LytR/AlgR family | chromosome | CDS | 1844191 | 741 | + | 0.634278 |
| NA | Rfer_4136 | sigma-24 (FecI-like) | chromosome | CDS | 4609858 | 720 | + | 0.626389 |
| NA | Rfer_0325 | transcriptional regulator, TetR family | chromosome | CDS | 323822 | 714 | + | 0.585434 |
| NA | Rfer_2606 | aminotransferase, class I and II | chromosome | CDS | 2870334 | 1188 | - | 0.622896 |
| NA | Rfer_2050 | transcriptional regulator, AraC family | chromosome | CDS | 2218559 | 1026 | + | 0.611111 |
| NA | Rfer_1581 | helix-turn-helix, Fis-type | chromosome | CDS | 1711934 | 237 | + | 0.540084 |
| NA | Rfer_3784 | GCN5-related N-acetyltransferase | chromosome | CDS | 4230240 | 489 | + | 0.543967 |
| NA | Rfer_3871 | transcriptional regulator, MerR family | chromosome | CDS | 4324233 | 354 | - | 0.508475 |
| NA | Rfer_3066 | transcriptional regulator, XRE family | chromosome | CDS | 3389363 | 342 | + | 0.616959 |
| NA | Rfer_2401 | two component transcriptional regulator, winged helix family | chromosome | CDS | 2644256 | 684 | - | 0.584795 |
| NA | Rfer_3459 | transcriptional regulator, BadM/Rrf2 family | chromosome | CDS | 3850251 | 549 | + | 0.599271 |
| NA | Rfer_3892 | transcriptional regulator, AsnC family | chromosome | CDS | 4343569 | 444 | + | 0.617117 |
| NA | Rfer_3521 | transcriptional regulator, TetR family | chromosome | CDS | 3917153 | 750 | - | 0.632 |
| NA | Rfer_1124 | transcriptional regulator, RpiR family | chromosome | CDS | 1206902 | 849 | - | 0.614841 |
| NA | Rfer_0957 | transcriptional regulator, LacI family | chromosome | CDS | 1006210 | 1035 | + | 0.582609 |
| NA | Rfer_0897 | response regulator receiver domain protein | chromosome | CDS | 940104 | 396 | + | 0.588384 |
| NA | Rfer_3470 | hypothetical protein | chromosome | CDS | 3861356 | 246 | + | 0.548781 |
| NA | Rfer_3529 | transcriptional regulator, TetR family | chromosome | CDS | 3926186 | 663 | + | 0.582202 |
| NA | Rfer_0178 | transcriptional regulator, MarR family | chromosome | CDS | 177911 | 477 | + | 0.503145 |
| NA | Rfer_1377 | protein of unknown function DUF179 | chromosome | CDS | 1490157 | 549 | + | 0.591985 |
| NA | Rfer_1422 | Exoribonuclease II | chromosome | CDS | 1529404 | 1479 | + | 0.647735 |
| NA | Rfer_3523 | two component transcriptional regulator, winged helix family | chromosome | CDS | 3919398 | 708 | - | 0.642655 |
| NA | Rfer_3699 | GCN5-related N-acetyltransferase | chromosome | CDS | 4132749 | 741 | - | 0.595142 |
| NA | Rfer_3577 | DEAD/DEAH box helicase-like | chromosome | CDS | 3979493 | 1422 | + | 0.627286 |
| NA | Rfer_3046 | transcriptional factor | chromosome | CDS | 3372013 | 1050 | + | 0.588571 |
| NA | Rfer_1343 | transcriptional regulator, MerR family | chromosome | CDS | 1446899 | 450 | + | 0.56 |
| NA | Rfer_2820 | transcriptional regulator, MerR family | chromosome | CDS | 3121666 | 531 | + | 0.615819 |
| NA | Rfer_3897 | transcriptional regulator, TetR family | chromosome | CDS | 4350975 | 642 | - | 0.635514 |
| NA | Rfer_3385 | transcriptional regulator, XRE family | chromosome | CDS | 3762050 | 510 | - | 0.605882 |
| NA | Rfer_3622 | transcriptional regulator, TetR family | chromosome | CDS | 4038812 | 711 | + | 0.630098 |
| NA | Rfer_3028 | DEAD/DEAH box helicase-like | chromosome | CDS | 3342906 | 1521 | - | 0.604865 |
| NA | Rfer_3597 | NusG antitermination factor | chromosome | CDS | 4008451 | 609 | - | 0.520525 |
| NA | Rfer_1869 | two component transcriptional regulator, LuxR family | chromosome | CDS | 2008018 | 696 | - | 0.625 |
| NA | Rfer_0303 | transcriptional regulator, TetR family | chromosome | CDS | 303859 | 687 | + | 0.624454 |
| NA | Rfer_2994 | SOS-response transcriptional repressor, LexA | chromosome | CDS | 3301478 | 675 | + | 0.611852 |
| NA | Rfer_1361 | putative transcriptional regulator | chromosome | CDS | 1466352 | 258 | - | 0.612403 |
| NA | Rfer_2058 | transcriptional regulator, LysR family | chromosome | CDS | 2228125 | 912 | + | 0.654605 |
| NA | Rfer_1042 | transcriptional regulator, RpiR family | chromosome | CDS | 1103130 | 906 | - | 0.602649 |
| NA | Rfer_2769 | GCN5-related N-acetyltransferase | chromosome | CDS | 3057857 | 528 | + | 0.594697 |
| NA | Rfer_1033 | transcriptional regulator, GntR family | chromosome | CDS | 1092213 | 1026 | + | 0.563353 |
| NA | Rfer_0846 | transcriptional regulator, LysR family | chromosome | CDS | 884519 | 714 | + | 0.585434 |
| NA | Rfer_2210 | two component transcriptional regulator, LuxR family | chromosome | CDS | 2416430 | 627 | - | 0.566188 |
| NA | Rfer_2176 | transcriptional regulator, BadM/Rrf2 family | chromosome | CDS | 2375664 | 537 | + | 0.540037 |
| NA | Rfer_0996 | ATP-dependent transcriptional regulator, MalT-like, LuxR family | chromosome | CDS | 1048290 | 2793 | - | 0.672395 |
| NA | Rfer_0987 | transcriptional regulator, LysR family | chromosome | CDS | 1037433 | 921 | + | 0.640608 |
| NA | Rfer_1086 | transcriptional regulator, LysR family | chromosome | CDS | 1160937 | 963 | + | 0.65109 |
| NA | Rfer_1639 | transcriptional regulator, LysR family | chromosome | CDS | 1769999 | 876 | + | 0.550228 |
| NA | Rfer_1215 | transcriptional regulator, MarR family | chromosome | CDS | 1301452 | 525 | - | 0.579048 |
| NA | Rfer_2014 | GCN5-related N-acetyltransferase | chromosome | CDS | 2171603 | 522 | + | 0.588123 |
| NA | Rfer_3592 | DNA-directed RNA polymerase, beta subunit | chromosome | CDS | 4001536 | 4053 | - | 0.559339 |
| NA | Rfer_3491 | transcriptional regulator, LysR family | chromosome | CDS | 3882818 | 978 | - | 0.620654 |
| NA | Rfer_2328 | transcriptional regulator, AraC family | chromosome | CDS | 2556650 | 1041 | - | 0.635927 |
| NA | Rfer_2732 | two component transcriptional regulator, winged helix family | chromosome | CDS | 3015256 | 732 | + | 0.627049 |
| NA | Rfer_1081 | transcriptional regulator, AsnC family | chromosome | CDS | 1155899 | 486 | + | 0.613169 |
| NA | Rfer_3725 | transcriptional regulator, GntR family | chromosome | CDS | 4156271 | 1446 | - | 0.643154 |
| NA | Rfer_1980 | response regulator receiver modulated metal dependent phosphohydrolase | chromosome | CDS | 2127664 | 1350 | - | 0.588889 |
| NA | Rfer_2133 | NusA antitermination factor | chromosome | CDS | 2312244 | 1497 | + | 0.577822 |
| NA | Rfer_0374 | transcriptional regulator, LysR family | chromosome | CDS | 381979 | 954 | + | 0.63522 |
| NA | Rfer_4071 | transcriptional regulator, LysR family | chromosome | CDS | 4540438 | 933 | + | 0.675241 |
| NA | Rfer_3949 | transcriptional regulatory protein | chromosome | CDS | 4416364 | 540 | + | 0.701852 |
| NA | Rfer_1873 | two component transcriptional regulator, LuxR family | chromosome | CDS | 2012505 | 660 | - | 0.559091 |
| NA | Rfer_2596 | transcriptional regulator, IclR family | chromosome | CDS | 2859761 | 807 | + | 0.54399 |
| NA | Rfer_3408 | urease accessory protein UreG | chromosome | CDS | 3791451 | 690 | + | 0.624638 |
| NA | Rfer_3648 | transcriptional regulator, AsnC family | chromosome | CDS | 4063211 | 471 | - | 0.598726 |
| NA | Rfer_4027 | putative sigma factor | chromosome | CDS | 4489028 | 1311 | + | 0.679634 |
| NA | Rfer_2270 | two component transcriptional regulator, winged helix family | chromosome | CDS | 2490133 | 735 | - | 0.612245 |
| NA | Rfer_2548 | sigma-24 (FecI-like) | chromosome | CDS | 2808111 | 552 | + | 0.648551 |
| NA | Rfer_0160 | transcriptional regulator, RpiR family | chromosome | CDS | 160112 | 852 | - | 0.660798 |
| NA | Rfer_0146 | transcriptional regulator, GntR family | chromosome | CDS | 148533 | 759 | + | 0.648221 |
| NA | Rfer_4096 | hydrogenase accessory protein HypB | chromosome | CDS | 4569342 | 939 | + | 0.609159 |
| NA | Rfer_1641 | GntR-like | chromosome | CDS | 1772053 | 771 | - | 0.626459 |
| NA | Rfer_3149 | (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA | chromosome | CDS | 3485493 | 2220 | + | 0.607658 |
| NA | Rfer_0457 | transcriptional regulator, LysR family | chromosome | CDS | 464120 | 987 | + | 0.596758 |
| NA | Rfer_1650 | negative regulator of class I heat shock protein | chromosome | CDS | 1780027 | 1005 | - | 0.591045 |
| NA | Rfer_1513 | transcriptional regulator, MarR family | chromosome | CDS | 1629704 | 588 | + | 0.622449 |
| NA | Rfer_1154 | transcriptional regulator, MarR family | chromosome | CDS | 1239005 | 489 | - | 0.556237 |
| NA | Rfer_3738 | transcriptional regulator, DeoR family | chromosome | CDS | 4170817 | 801 | + | 0.610487 |
| NA | Rfer_0279 | transcriptional regulator, MarR family | chromosome | CDS | 283566 | 477 | + | 0.631027 |
| NA | Rfer_2007 | GreA/GreB family elongation factor | chromosome | CDS | 2165055 | 543 | + | 0.572744 |
| NA | Rfer_3227 | transcriptional regulator, XRE family with cupin sensor domain | chromosome | CDS | 3574393 | 606 | - | 0.554455 |
| NA | Rfer_3282 | transcriptional regulator, LuxR family | chromosome | CDS | 3643984 | 609 | - | 0.646962 |
| NA | Rfer_0202 | GntR-like | chromosome | CDS | 200101 | 774 | - | 0.634367 |
| NA | Rfer_2659 | Protein of unknown function DUF193 | chromosome | CDS | 2926772 | 450 | + | 0.58 |
| NA | Rfer_1839 | transcriptional regulator, GntR family | chromosome | CDS | 1977711 | 663 | - | 0.550528 |
| NA | Rfer_3390 | transcriptional regulator, AraC family | chromosome | CDS | 3766690 | 840 | - | 0.611905 |
| NA | Rfer_1766 | transcriptional regulator, TetR family | chromosome | CDS | 1898448 | 591 | - | 0.631134 |
| NA | Rfer_1135 | two component transcriptional regulator, LuxR family | chromosome | CDS | 1220460 | 606 | - | 0.541254 |
| NA | Rfer_3639 | sigma-24 (FecI-like) | chromosome | CDS | 4056069 | 531 | + | 0.642185 |
| NA | Rfer_4157 | transcriptional regulator, GntR family | chromosome | CDS | 4628598 | 711 | - | 0.590717 |
| NA | Rfer_0578 | two component transcriptional regulator, winged helix family | chromosome | CDS | 600058 | 723 | - | 0.655602 |
| NA | Rfer_2042 | GCN5-related N-acetyltransferase | chromosome | CDS | 2210474 | 513 | - | 0.608187 |
| NA | Rfer_4023 | transcriptional regulator, MerR family | chromosome | CDS | 4486997 | 384 | - | 0.653646 |
| NA | Rfer_3710 | sigma 28 (Flagella/Sporulation) | chromosome | CDS | 4143189 | 717 | + | 0.623431 |
| NA | Rfer_1976 | Ribonuclease R | chromosome | CDS | 2121499 | 2241 | + | 0.595716 |
| NA | Rfer_3778 | response regulator receiver domain protein | chromosome | CDS | 4222316 | 375 | - | 0.573333 |
| NA | Rfer_3148 | DNA-directed RNA polymerase, omega subunit | chromosome | CDS | 3485141 | 204 | + | 0.588235 |
| NA | Rfer_2599 | transcriptional regulator, TetR family | chromosome | CDS | 2862244 | 702 | + | 0.569801 |
| NA | Rfer_2022 | transcriptional regulator, AsnC family | chromosome | CDS | 2181464 | 474 | - | 0.618143 |
| NA | Rfer_0399 | transcriptional regulator, LysR family | chromosome | CDS | 405634 | 909 | + | 0.634763 |
| NA | Rfer_1866 | transcriptional regulator, BadM/Rrf2 family | chromosome | CDS | 2005988 | 465 | + | 0.610753 |
| NA | Rfer_3743 | two component transcriptional regulator, LuxR family | chromosome | CDS | 4175520 | 678 | - | 0.662242 |
| NA | Rfer_3882 | transcriptional regulator, AsnC family | chromosome | CDS | 4333606 | 426 | - | 0.638498 |
| NA | Rfer_1121 | ROK | chromosome | CDS | 1204836 | 993 | - | 0.630413 |
| NA | Rfer_0055 | metal dependent phosphohydrolase | chromosome | CDS | 58043 | 747 | + | 0.593039 |
| NA | Rfer_2164 | transcriptional regulator, MarR family | chromosome | CDS | 2359622 | 549 | - | 0.586521 |
| NA | Rfer_0807 | transcriptional regulator, LysR family | chromosome | CDS | 844561 | 933 | - | 0.613076 |
| NA | Rfer_1620 | transcriptional regulator, MerR family | chromosome | CDS | 1752458 | 333 | - | 0.570571 |
| NA | Rfer_0844 | transcriptional regulator, LysR family | chromosome | CDS | 882368 | 906 | + | 0.611479 |
| NA | Rfer_3100 | transcriptional regulator, RpiR family | chromosome | CDS | 3438311 | 960 | + | 0.611458 |
| NA | Rfer_0151 | Helix-turn-helix, type 11 | chromosome | CDS | 152208 | 696 | - | 0.633621 |
| NA | Rfer_0447 | GntR-like | chromosome | CDS | 453032 | 795 | - | 0.665409 |
| NA | Rfer_0894 | two component transcriptional regulator, LuxR family | chromosome | CDS | 934543 | 654 | + | 0.649847 |
| NA | Rfer_3403 | GCN5-related N-acetyltransferase | chromosome | CDS | 3789039 | 459 | + | 0.594771 |
| NA | Rfer_0131 | transcriptional regulator, LysR family | chromosome | CDS | 135237 | 924 | + | 0.563853 |
| NA | Rfer_0573 | transcriptional regulator, MarR family | chromosome | CDS | 595347 | 456 | + | 0.618421 |
| NA | Rfer_3373 | two component transcriptional regulator, LuxR family | chromosome | CDS | 3747928 | 789 | - | 0.598226 |
| NA | Rfer_0283 | transcriptional regulator, MarR family | chromosome | CDS | 287482 | 441 | + | 0.589569 |
| NA | Rfer_3458 | transcriptional regulator, LysR family | chromosome | CDS | 3849168 | 900 | - | 0.63 |
| NA | Rfer_0296 | transcriptional regulator, LysR family | chromosome | CDS | 297415 | 924 | + | 0.636364 |
| NA | Rfer_3579 | DEAD/DEAH box helicase-like | chromosome | CDS | 3981305 | 1266 | - | 0.638231 |
| NA | Rfer_3729 | aminotransferase, class I and II | chromosome | CDS | 4160156 | 1263 | + | 0.650831 |
| NA | Rfer_0441 | transcriptional regulator, LysR family | chromosome | CDS | 447187 | 942 | + | 0.599788 |
| NA | Rfer_2636 | transcriptional regulator, LuxR family | chromosome | CDS | 2899355 | 621 | + | 0.57649 |
| NA | Rfer_3900 | conserved hypothetical protein | chromosome | CDS | 4355281 | 981 | + | 0.627931 |
| NA | Rfer_0119 | transcriptional regulator, LysR family | chromosome | CDS | 122006 | 900 | + | 0.688889 |
| NA | Rfer_4115 | transcriptional regulator, MarR family | chromosome | CDS | 4592632 | 441 | + | 0.673469 |
| NA | Rfer_3636 | transcriptional regulator, ArsR family | chromosome | CDS | 4053250 | 363 | - | 0.553719 |
| NA | Rfer_1899 | ROK | chromosome | CDS | 2039728 | 1230 | - | 0.642276 |
| NA | Rfer_2169 | DEAD/DEAH box helicase-like | chromosome | CDS | 2364147 | 1725 | - | 0.633623 |
| NA | Rfer_1558 | sigma 70 (RpoD) | chromosome | CDS | 1682914 | 2352 | - | 0.552721 |
| NA | Rfer_3127 | transcriptional regulator, IclR family | chromosome | CDS | 3465734 | 840 | - | 0.644048 |
| NA | Rfer_0591 | transcriptional regulator, GntR family | chromosome | CDS | 615614 | 1395 | - | 0.615054 |
| NA | Rfer_0230 | transcriptional regulator, XRE family with cupin sensor domain | chromosome | CDS | 229420 | 594 | - | 0.580808 |
| NA | Rfer_4186 | transcriptional regulator, GntR family | chromosome | CDS | 4656316 | 756 | + | 0.641534 |
| NA | Rfer_0422 | two component heavy metal response transcriptional regulator, winged helix family | chromosome | CDS | 430626 | 684 | + | 0.593567 |
| NA | Rfer_4146 | sigma-24 (FecI-like) | chromosome | CDS | 4617914 | 564 | + | 0.599291 |
| NA | Rfer_1049 | hypothetical protein | chromosome | CDS | 1112552 | 831 | - | 0.574007 |
| NA | Rfer_0890 | transcriptional regulator, IclR family | chromosome | CDS | 929900 | 915 | + | 0.612022 |
| NA | Rfer_0400 | transcriptional regulator, TetR family | chromosome | CDS | 406565 | 618 | + | 0.624595 |
| NA | Rfer_0921 | two component transcriptional regulator, LuxR family | chromosome | CDS | 968221 | 600 | - | 0.615 |
| NA | Rfer_1394 | transcriptional regulator, LysR family | chromosome | CDS | 1506753 | 918 | + | 0.593682 |
| NA | Rfer_1112 | transcriptional regulator, LacI family | chromosome | CDS | 1192717 | 1011 | - | 0.599407 |
| NA | Rfer_2832 | phage transcriptional regulator, AlpA | chromosome | CDS | 3132107 | 366 | + | 0.587432 |
| NA | Rfer_0235 | transcriptional regulator, AsnC family | chromosome | CDS | 233909 | 531 | + | 0.553672 |
| NA | Rfer_0016 | transcriptional regulator, TetR family | chromosome | CDS | 18731 | 621 | + | 0.62963 |
| NA | Rfer_1821 | transcriptional regulator, XRE family | chromosome | CDS | 1955225 | 1953 | - | 0.417307 |
| NA | Rfer_1922 | transcriptional regulator, LysR family | chromosome | CDS | 2064303 | 969 | + | 0.652219 |
| NA | Rfer_3688 | ATP-dependent DNA helicase RecG | chromosome | CDS | 4106480 | 2244 | - | 0.635027 |
| NA | Rfer_0023 | transcriptional regulator, MerR family | chromosome | CDS | 24678 | 720 | - | 0.613889 |
| NA | Rfer_3667 | transcriptional regulator, ArsR family | chromosome | CDS | 4087579 | 330 | - | 0.609091 |
| NA | Rfer_3820 | two component transcriptional regulator, winged helix family | chromosome | CDS | 4263031 | 666 | + | 0.62012 |
| NA | Rfer_1091 | two component transcriptional regulator, winged helix family | chromosome | CDS | 1167073 | 720 | + | 0.656944 |
| NA | Rfer_2438 | transcriptional regulator, LysR family | chromosome | CDS | 2684791 | 975 | - | 0.610256 |
| NA | Rfer_1972 | putative transcriptional regulator | chromosome | CDS | 2118128 | 312 | - | 0.541667 |
| NA | Rfer_1413 | DEAD/DEAH box helicase-like | chromosome | CDS | 1521515 | 1872 | + | 0.600962 |
| NA | Rfer_1697 | transcriptional regulator, MarR family | chromosome | CDS | 1826512 | 483 | + | 0.561077 |
| NA | Rfer_0879 | transcriptional regulator, LysR family | chromosome | CDS | 917327 | 945 | - | 0.615873 |
| NA | Rfer_1204 | sigma-24 (FecI-like) | chromosome | CDS | 1290547 | 1068 | - | 0.566479 |
| NA | Rfer_3768 | transcriptional regulator, LuxR family | chromosome | CDS | 4206565 | 696 | - | 0.627874 |
| NA | Rfer_3834 | transcriptional regulator, AraC family | chromosome | CDS | 4280097 | 1062 | + | 0.680791 |
| NA | Rfer_0853 | transcriptional regulator, MerR family | chromosome | CDS | 889671 | 441 | - | 0.61678 |
| NA | Rfer_0806 | transcriptional regulator, LysR family | chromosome | CDS | 843620 | 939 | + | 0.649627 |
| NA | Rfer_0584 | transcriptional regulator, AraC family | chromosome | CDS | 605575 | 993 | - | 0.625378 |
| NA | Rfer_3082 | two component transcriptional regulator, LuxR family | chromosome | CDS | 3416055 | 606 | - | 0.528053 |
| NA | Rfer_2039 | two component transcriptional regulator, LuxR family | chromosome | CDS | 2203717 | 639 | - | 0.651017 |
| NA | Rfer_3143 | GCN5-related N-acetyltransferase | chromosome | CDS | 3482100 | 432 | + | 0.601852 |
| NA | Rfer_3646 | two component transcriptional regulator, winged helix family | chromosome | CDS | 4061803 | 732 | - | 0.650273 |
| NA | Rfer_2577 | conserved hypothetical protein | chromosome | CDS | 2837743 | 426 | - | 0.643192 |
| NA | Rfer_0778 | sigma-54 (RpoN) | chromosome | CDS | 814467 | 1593 | + | 0.634024 |
| NA | Rfer_2670 | NusB antitermination factor | chromosome | CDS | 2938490 | 534 | + | 0.625468 |
| NA | Rfer_3411 | ribonuclease II | chromosome | CDS | 3794794 | 2088 | + | 0.618295 |
| NA | Rfer_3843 | transcriptional regulator, MerR family | chromosome | CDS | 4290624 | 465 | - | 0.621505 |
| NA | Rfer_0928 | transcriptional regulator, RpiR family | chromosome | CDS | 977117 | 933 | - | 0.616292 |
| NA | Rfer_0278 | putative transcriptional regulator | chromosome | CDS | 282960 | 387 | + | 0.622739 |
| NA | Rfer_1221 | transcriptional regulator, LysR family | chromosome | CDS | 1307718 | 930 | - | 0.635484 |
| NA | Rfer_4061 | transcriptional regulator, TetR family | chromosome | CDS | 4528747 | 723 | - | 0.618257 |
| NA | Rfer_1872 | response regulator receiver domain protein | chromosome | CDS | 2012077 | 420 | + | 0.583333 |
| NA | Rfer_0910 | transcriptional regulator, LysR family | chromosome | CDS | 953987 | 921 | - | 0.588491 |
| NA | Rfer_2313 | putative transcriptional regulator | chromosome | CDS | 2536549 | 693 | - | 0.565657 |
| NA | Rfer_0970 | transcriptional regulator, IclR family | chromosome | CDS | 1020016 | 777 | + | 0.513514 |
| NA | Rfer_3070 | sigma 28 | chromosome | CDS | 3394443 | 2181 | + | 0.564879 |
| NA | Rfer_1892 | transcriptional regulator, PadR-like family | chromosome | CDS | 2030530 | 531 | + | 0.630885 |
| NA | Rfer_2540 | two component transcriptional regulator, winged helix family | chromosome | CDS | 2799418 | 687 | - | 0.659389 |
| NA | Rfer_4011 | transcriptional regulator, LysR family | chromosome | CDS | 4476407 | 900 | - | 0.668889 |
| NA | Rfer_0348 | transcriptional regulator, GntR family | chromosome | CDS | 347496 | 1488 | - | 0.607527 |
| NA | Rfer_2899 | transcription termination factor Rho | chromosome | CDS | 3207856 | 1263 | + | 0.586698 |
| NA | Rfer_0782 | two component transcriptional regulator, LuxR family | chromosome | CDS | 819716 | 747 | + | 0.64257 |
| NA | Rfer_1907 | transcriptional regulator, LysR family | chromosome | CDS | 2047537 | 939 | - | 0.647497 |
| NA | Rfer_3681 | transcriptional regulator, LysR family | chromosome | CDS | 4101164 | 954 | - | 0.611111 |
| NA | Rfer_1331 | transcription-repair coupling factor | chromosome | CDS | 1430013 | 3528 | - | 0.63237 |
| NA | Rfer_3479 | transcriptional regulator, LysR family | chromosome | CDS | 3870934 | 921 | - | 0.570033 |
| NA | Rfer_0297 | transcriptional regulator, AraC family | chromosome | CDS | 298346 | 924 | - | 0.654762 |
| NA | Rfer_2533 | transcriptional regulator, LysR family | chromosome | CDS | 2793224 | 900 | - | 0.587778 |
| NA | Rfer_0053 | parB-like partition proteins | chromosome | CDS | 56171 | 942 | + | 0.654989 |
| NA | Rfer_3387 | Negative transcriptional regulator | chromosome | CDS | 3764761 | 642 | - | 0.655763 |
| NA | Rfer_3950 | two component transcriptional regulator, winged helix family | chromosome | CDS | 4417001 | 675 | + | 0.614815 |
| NA | Rfer_0341 | transcriptional regulator, LysR family | chromosome | CDS | 340563 | 942 | + | 0.621019 |
| NA | Rfer_3508 | transcriptional regulator, TetR family | chromosome | CDS | 3899720 | 684 | - | 0.625731 |
| NA | Rfer_3584 | GntR-like | chromosome | CDS | 3988604 | 828 | - | 0.638889 |
| NA | Rfer_1743 | Ribonuclease III | chromosome | CDS | 1879429 | 687 | + | 0.58952 |
| NA | Rfer_2779 | sigma-70 region 2 | chromosome | CDS | 3066610 | 1053 | - | 0.622982 |
| NA | Rfer_4217 | DNA-directed RNA polymerase, alpha subunit | chromosome | CDS | 4692224 | 990 | - | 0.512121 |
| NA | Rfer_3849 | putative sigma 54 modulation protein/ribosomal protein S30EA | chromosome | CDS | 4299125 | 591 | + | 0.598985 |
| NA | Rfer_3321 | sigma-24 (FecI-like) | chromosome | CDS | 3685863 | 567 | - | 0.5097 |
| NA | Rfer_0013 | transcriptional regulator, GntR family | chromosome | CDS | 14571 | 756 | - | 0.56746 |
| NA | Rfer_3685 | two component transcriptional regulator, winged helix family | chromosome | CDS | 4104793 | 672 | - | 0.635417 |
| NA | Rfer_2452 | transcriptional regulator, LytR/AlgR family | chromosome | CDS | 2699474 | 717 | - | 0.591353 |
| NA | Rfer_1603 | sigma-24 (FecI-like) | chromosome | CDS | 1736610 | 627 | + | 0.513557 |
| NA | Rfer_2347 | transcriptional regulator, IclR family | chromosome | CDS | 2580545 | 792 | - | 0.544192 |
| NA | Rfer_3564 | transcriptional regulator, DeoR family | chromosome | CDS | 3962815 | 795 | - | 0.591195 |
| NA | Rfer_1802 | transcriptional regulator, GntR family | chromosome | CDS | 1939762 | 795 | - | 0.594969 |
| NA | Rfer_1736 | sigma-24 (FecI-like) | chromosome | CDS | 1871901 | 648 | + | 0.546296 |
| NA | Rfer_4187 | hypothetical protein | chromosome | CDS | 4657277 | 285 | + | 0.575439 |
| NA | Rfer_3150 | GreA/GreB family elongation factor | chromosome | CDS | 3487727 | 564 | - | 0.597518 |
| NA | Rfer_3465 | transcriptional regulator, LysR family | chromosome | CDS | 3856983 | 999 | - | 0.596597 |
| NA | Rfer_0263 | transcriptional regulator, MarR family | chromosome | CDS | 266435 | 456 | - | 0.504386 |
| NA | Rfer_2067 | transcriptional regulator, TetR family | chromosome | CDS | 2240926 | 651 | + | 0.614439 |
| NA | Rfer_0409 | transcriptional regulator, AraC family | chromosome | CDS | 415810 | 822 | - | 0.671533 |
| NA | Rfer_0874 | transcriptional regulator, GntR family | chromosome | CDS | 911834 | 681 | + | 0.612335 |
| NA | Rfer_4208 | ATP-dependent transcriptional regulator, MalT-like, LuxR family | chromosome | CDS | 4680475 | 2685 | + | 0.589199 |
| NA | Rfer_3614 | putative transcriptional acitvator, Baf | chromosome | CDS | 4029142 | 768 | + | 0.661458 |
| NA | Rfer_2071 | (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA | chromosome | CDS | 2244661 | 2256 | + | 0.633422 |
| NA | Rfer_2523 | transcriptional regulator, AraC family | chromosome | CDS | 2782601 | 990 | + | 0.672727 |
| NA | Rfer_3620 | transcriptional regulator, LysR family | chromosome | CDS | 4036690 | 876 | - | 0.655251 |
| NA | Rfer_3120 | two component transcriptional regulator, winged helix family | chromosome | CDS | 3460033 | 720 | + | 0.583333 |
| NA | Rfer_3140 | transcriptional regulator, TetR family | chromosome | CDS | 3479850 | 594 | + | 0.611111 |
| NA | Rfer_0510 | two component transcriptional regulator, winged helix family | chromosome | CDS | 529091 | 705 | - | 0.636879 |
| NA | Rfer_3677 | transcriptional regulator, DeoR family | chromosome | CDS | 4097007 | 765 | + | 0.613072 |
| NA | Rfer_0563 | two component transcriptional regulator, LuxR family | chromosome | CDS | 585217 | 630 | - | 0.596825 |
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