Gene list
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COG category: Transcription
Organism: Syntrophus aciditrophicus SB
Number of genes found: 96
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| Syntrophus aciditrophicus SB | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | SYN_02432 | cold shock protein | SubName: Full=Cold shock protein; | chromosome | CDS | 2869699 | 201 | + | 0.462687 |
| NA | SYN_00477 | nickel-responsive regulator | RecName: Full=Putative nickel-responsive regulator; | chromosome | CDS | 2095286 | 414 | + | 0.475845 |
| NA | SYN_02924 | bacterial regulatory protein, Fis family | SubName: Full=Bacterial regulatory protein, Fis family; | chromosome | CDS | 854289 | 501 | - | 0.508982 |
| NA | SYN_01019 | two-component response regulator | SubName: Full=Two-component response regulator; | chromosome | CDS | 1160725 | 654 | - | 0.495413 |
| NA | SYN_01953 | response regulator with a HTH DNA-binding domain | SubName: Full=Response regulator with a HTH DNA-binding domain; | chromosome | CDS | 806039 | 633 | + | 0.554502 |
| NA | SYN_01929 | ATP-dependent RNA helicase | SubName: Full=ATP-dependent RNA helicase; | chromosome | CDS | 1879588 | 1242 | - | 0.52818 |
| NA | SYN_02737 | hypothetical transcriptional regulatory protein | SubName: Full=Hypothetical transcriptional regulatory protein; | chromosome | CDS | 958113 | 420 | + | 0.542857 |
| NA | SYN_03689 | gcn5-related N-acetyltransferase | SubName: Full=Gcn5-related N-acetyltransferase; | chromosome | CDS | 2217717 | 351 | + | 0.51567 |
| NA | SYN_01437 | cold shock protein | SubName: Full=Cold shock protein; | chromosome | CDS | 256172 | 273 | - | 0.443223 |
| NA | SYN_02736 | helix-turn-helix DNA binding protein | SubName: Full=Helix-turn-helix DNA binding protein; | chromosome | CDS | 958608 | 345 | - | 0.484058 |
| NA | SYN_01789 | transcription elongation factor | SubName: Full=Transcription elongation factor; | chromosome | CDS | 2700704 | 1263 | - | 0.537609 |
| NA | SYN_00093 | RNA 3'-terminal phosphate cyclase | SubName: Full=RNA 3-terminal phosphate cyclase; EC=6.5.1.4; | chromosome | CDS | 2585093 | 1068 | + | 0.642322 |
| NA | SYN_02956 | transcriptional regulator containing sigma 54 interaction domain | SubName: Full=Transcriptional regulator containing sigma 54 interaction domain; | chromosome | CDS | 766633 | 2094 | + | 0.518147 |
| NA | SYN_02733 | helix-turn-helix DNA binding protein | SubName: Full=Helix-turn-helix DNA binding protein; | chromosome | CDS | 959759 | 249 | + | 0.522088 |
| NA | SYN_01881 | transcriptional regulator, Cro/CI family | SubName: Full=Transcriptional regulator, Cro/CI family; | chromosome | CDS | 1764153 | 387 | - | 0.498708 |
| NA | SYN_02759 | transcription-repair coupling factor | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 926923 | 3609 | - | 0.59407 |
| NA | SYN_00582 | asnC family transcription regulatory protein | SubName: Full=AsnC family transcription regulatory protein; | chromosome | CDS | 2393389 | 543 | + | 0.511971 |
| NA | SYN_01678 | acetyltransferase (GNAT) family protein | SubName: Full=Acetyltransferase (GNAT) family protein; | chromosome | CDS | 3013222 | 456 | + | 0.458333 |
| NA | SYN_00775 | two-component response regulator | SubName: Full=Two-component response regulator; | chromosome | CDS | 2371227 | 648 | + | 0.5 |
| NA | SYN_00562 | acetyltransferase (GNAT) family protein | SubName: Full=Acetyltransferase (GNAT) family protein; | chromosome | CDS | 1136995 | 456 | - | 0.506579 |
| NA | SYN_02373 | transcription termination factor NusB | RecName: Full=N utilization substance protein B homolog; Short=Protein NusB; | chromosome | CDS | 191723 | 486 | - | 0.495885 |
| NA | SYN_00639 | RNA polymerase sigma-B factor | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 1953418 | 870 | - | 0.510345 |
| NA | SYN_00580 | transcription antitermination protein | RecName: Full=Transcription termination/antitermination protein nusG; | chromosome | CDS | 2392469 | 504 | + | 0.52381 |
| NA | SYN_00599 | Ni2+ insertion GTPase | SubName: Full=Ni2+ insertion GTPase; | chromosome | CDS | 2404721 | 660 | + | 0.543939 |
| NA | SYN_01508 | transcriptional regulator helix turn helix | SubName: Full=Transcriptional regulator helix turn helix; | chromosome | CDS | 1301022 | 354 | + | 0.485876 |
| NA | SYN_01919 | sigma-54-dependent transcriptional activator | SubName: Full=Sigma-54-dependent transcriptional activator; | chromosome | CDS | 1969256 | 1569 | - | 0.474187 |
| NA | SYN_02359 | serine phosphatase RsbU, regulator of sigma subunit | SubName: Full=Serine phosphatase RsbU, regulator of sigma subunit; | chromosome | CDS | 499993 | 1959 | - | 0.53803 |
| NA | SYN_02416 | transcriptional regulator TetR family | SubName: Full=Transcriptional regulator TetR family; | chromosome | CDS | 2887131 | 672 | + | 0.415179 |
| NA | SYN_00904 | GTP pyrophosphokinase / guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase | SubName: Full=GTP pyrophosphokinase / guanosine-3,5-bis(Diphosphate) 3-pyrophosphohydrolase; EC=2.7.6.5; EC=3.1.7.2; | chromosome | CDS | 1653462 | 2172 | + | 0.474678 |
| NA | SYN_00034 | response regulator with a winged-helix DNA-binding domain | SubName: Full=Response regulator with a winged-helix DNA-binding domain; | chromosome | CDS | 59594 | 444 | - | 0.522523 |
| NA | SYN_01297 | cold shock protein | SubName: Full=Cold shock protein; | chromosome | CDS | 3116024 | 399 | + | 0.463659 |
| NA | SYN_00347 | transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 2947797 | 339 | - | 0.442478 |
| NA | SYN_01280 | RNA polymerase subunit | RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega; | chromosome | CDS | 290329 | 276 | + | 0.485507 |
| NA | SYN_01298 | superfamily II DNA and RNA helicases | SubName: Full=Superfamily II DNA and RNA helicases; | chromosome | CDS | 3116599 | 1719 | + | 0.535777 |
| NA | SYN_00542 | transcription elongation factor | RecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; | chromosome | CDS | 635172 | 486 | - | 0.415638 |
| NA | SYN_02624 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 2840766 | 501 | + | 0.473054 |
| NA | SYN_01725 | transcriptional regulator, MerR family | SubName: Full=Transcriptional regulator, MerR family; | chromosome | CDS | 660361 | 363 | + | 0.443526 |
| NA | SYN_01855 | predicted transcriptional regulator, DeoR family | SubName: Full=Predicted transcriptional regulator, DeoR family; | chromosome | CDS | 1736672 | 1041 | + | 0.541787 |
| NA | SYN_02108 | transcriptional regulator TetR family | SubName: Full=Transcriptional regulator TetR family; | chromosome | CDS | 1077341 | 648 | + | 0.432099 |
| NA | SYN_02517 | hypothetical cytosolic protein | SubName: Full=Hypothetical cytosolic protein; | chromosome | CDS | 2458223 | 303 | + | 0.514852 |
| NA | SYN_00019 | cold shock DNA-binding domain | SubName: Full=Cold shock DNA-binding domain; | chromosome | CDS | 44429 | 531 | + | 0.542373 |
| NA | SYN_01901 | GTP pyrophosphokinase / guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase | SubName: Full=GTP pyrophosphokinase / guanosine-3,5-bis(Diphosphate) 3-pyrophosphohydrolase; EC=2.7.6.5; EC=3.1.7.2; | chromosome | CDS | 1780697 | 1506 | + | 0.503984 |
| NA | SYN_01358 | hypothetical membrane protein | SubName: Full=Hypothetical membrane protein; | chromosome | CDS | 1133436 | 1146 | - | 0.504363 |
| NA | SYN_01122 | transcriptional regulator, sigma-54-dependent | SubName: Full=Transcriptional regulator, sigma-54-dependent; | chromosome | CDS | 410684 | 1938 | + | 0.561404 |
| NA | SYN_02488 | cold shock protein | SubName: Full=Cold shock protein; | chromosome | CDS | 2438394 | 204 | + | 0.47549 |
| NA | SYN_02539 | acetyltransferase (GNAT) family | SubName: Full=Acetyltransferase (GNAT) family; | chromosome | CDS | 1506211 | 492 | - | 0.544715 |
| NA | SYN_02121 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 1087753 | 960 | + | 0.534375 |
| NA | SYN_02175 | cold shock protein | SubName: Full=Cold shock protein; | chromosome | CDS | 1477390 | 201 | + | 0.487562 |
| NA | SYN_00178 | superfamily II DNA and RNA helicases | SubName: Full=Superfamily II DNA and RNA helicases; | chromosome | CDS | 64776 | 1578 | + | 0.579214 |
| NA | SYN_02037 | sigma factor | SubName: Full=Sigma factor; | chromosome | CDS | 17505 | 654 | - | 0.533639 |
| NA | SYN_00652 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 2140888 | 444 | + | 0.403153 |
| NA | SYN_00100 | acetyltransferase, GNAT family | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 1820840 | 591 | + | 0.443316 |
| NA | SYN_02071 | swf/snf family helicase | SubName: Full=Swf/snf family helicase; | chromosome | CDS | 3155069 | 4224 | + | 0.596354 |
| NA | SYN_01827 | SNF2-related:Helicase, C-terminal:type III restriction enzyme | SubName: Full=SNF2-related:Helicase, C-terminal:type III restriction enzyme; | chromosome | CDS | 1699796 | 3273 | - | 0.525512 |
| NA | SYN_02369 | regulatory protein | RecName: Full=Transcriptional repressor NrdR; | chromosome | CDS | 194853 | 480 | - | 0.49375 |
| NA | SYN_03611 | GTP pyrophosphokinase / guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | SubName: Full=GTP pyrophosphokinase / guanosine-3,5-bis(Diphosphate) 3-pyrophosphohydrolase; EC=2.7.6.5; EC=3.1.7.2; | chromosome | CDS | 1872353 | 633 | - | 0.488152 |
| NA | SYN_02883 | bvg accessory factor | RecName: Full=Type III pantothenate kinase; EC=2.7.1.33; AltName: Full=PanK-III; AltName: Full=Pantothenic acid kinase; | chromosome | CDS | 2020143 | 765 | - | 0.522876 |
| NA | SYN_00795 | radical SAM superfamily protein | SubName: Full=Radical SAM superfamily protein; | chromosome | CDS | 2348746 | 1092 | + | 0.580586 |
| NA | SYN_02588 | response regulator with a HTH DNA-binding domain | SubName: Full=Response regulator with a HTH DNA-binding domain; | chromosome | CDS | 232136 | 651 | - | 0.526882 |
| NA | SYN_01834 | alpA-like transcriptional regulator | SubName: Full=AlpA-like transcriptional regulator; | chromosome | CDS | 1710593 | 243 | - | 0.547325 |
| NA | SYN_00359 | DNA polymerase V subunit | SubName: Full=DNA polymerase V subunit; | chromosome | CDS | 2939795 | 588 | - | 0.54932 |
| NA | SYN_00796 | ribonuclease III | RecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; | chromosome | CDS | 2348037 | 723 | + | 0.533887 |
| NA | SYN_01852 | snf2-related protein with C-terminal Helicase | SubName: Full=Snf2-related protein with C-terminal Helicase; | chromosome | CDS | 1730101 | 3537 | - | 0.549336 |
| NA | SYN_00427 | ATP-dependent DNA helicase | SubName: Full=ATP-dependent DNA helicase; | chromosome | CDS | 699671 | 2103 | + | 0.521636 |
| NA | SYN_02988 | transcriptional regulator | SubName: Full=Transcriptional regulator; | chromosome | CDS | 2763041 | 978 | - | 0.559305 |
| NA | SYN_01033 | transcription elongation factor | SubName: Full=Transcription elongation factor; | chromosome | CDS | 1635430 | 405 | + | 0.511111 |
| NA | SYN_01798 | transcription termination factor rho | RecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; | chromosome | CDS | 2708199 | 1248 | - | 0.539263 |
| NA | SYN_02693 | acetyltransferase | SubName: Full=Acetyltransferase; EC=2.3.1.-; | chromosome | CDS | 2601480 | 504 | - | 0.488095 |
| NA | SYN_01601 | DNA-directed RNA polymerase alpha chain | RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; | chromosome | CDS | 326987 | 1038 | + | 0.431599 |
| NA | SYN_03226 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | chromosome | CDS | 22064 | 702 | - | 0.517094 |
| NA | SYN_00063 | DNA-directed RNA polymerase beta' chain | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 306953 | 4146 | + | 0.500724 |
| NA | SYN_00717 | transcriptional regulator | SubName: Full=Transcriptional regulator; | chromosome | CDS | 2205482 | 378 | - | 0.428571 |
| NA | SYN_02827 | RNA polymerase flagellar sigma factor | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 1364764 | 786 | + | 0.442748 |
| NA | SYN_00015 | transcriptional regulator with HTH domain | SubName: Full=Transcriptional regulator with HTH domain; | chromosome | CDS | 39454 | 549 | - | 0.449909 |
| NA | SYN_00341 | transcriptional regulator, arsR family | SubName: Full=Transcriptional regulator, arsR family; | chromosome | CDS | 2951107 | 375 | + | 0.541333 |
| NA | SYN_00070 | transcription antitermination protein | RecName: Full=Transcription termination/antitermination protein NusG; | chromosome | CDS | 299664 | 531 | + | 0.474576 |
| NA | SYN_02076 | transcriptional regulator, tetR family | SubName: Full=Transcriptional regulator, tetR family; | chromosome | CDS | 3147761 | 576 | + | 0.512153 |
| NA | SYN_02801 | response regulator with GAF and HD domains | SubName: Full=Response regulator with GAF and HD domains; | chromosome | CDS | 1392497 | 1485 | + | 0.405387 |
| NA | SYN_03199 | hypothetical cytosolic protein | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 1273588 | 285 | - | 0.442105 |
| NA | SYN_02743 | transcriptional regulator | SubName: Full=Transcriptional regulator; | chromosome | CDS | 953909 | 966 | - | 0.536232 |
| NA | SYN_00757 | RNA polymerase sigma factor | RecName: Full=RNA polymerase sigma factor RpoD; AltName: Full=Sigma-70; | chromosome | CDS | 2240067 | 1743 | - | 0.44062 |
| NA | SYN_00342 | transcriptional regulator, marR family | SubName: Full=Transcriptional regulator, marR family; | chromosome | CDS | 2950413 | 513 | - | 0.497076 |
| NA | SYN_00017 | superfamily II DNA/RNA helicase, SNF2 family | SubName: Full=Superfamily II DNA/RNA helicase, SNF2 family; | chromosome | CDS | 40382 | 3582 | - | 0.53713 |
| NA | SYN_00007 | transcriptional regulator with a HTH domain | SubName: Full=Transcriptional regulator with a HTH domain; | chromosome | CDS | 28880 | 1578 | - | 0.604563 |
| NA | SYN_02430 | ATP-dependent RNA helicase | SubName: Full=ATP-dependent RNA helicase; | chromosome | CDS | 2870357 | 1272 | + | 0.527516 |
| NA | SYN_00945 | RNA polymerase sigma-54 factor | RecName: Full=RNA polymerase sigma-54 factor; | chromosome | CDS | 1230643 | 1464 | + | 0.451503 |
| NA | SYN_01633 | nif-specific regulatory protein with sigma 54 interaction domain | SubName: Full=Nif-specific regulatory protein with sigma 54 interaction domain; | chromosome | CDS | 3058831 | 1542 | + | 0.562905 |
| NA | SYN_03008 | rrf2 family protein | SubName: Full=Rrf2 family protein; | chromosome | CDS | 2516307 | 555 | - | 0.472072 |
| NA | SYN_01476 | bacterial regulatory protein, LuxR family | SubName: Full=Bacterial regulatory protein, LuxR family; | chromosome | CDS | 1012519 | 909 | - | 0.455446 |
| NA | SYN_02265 | transcriptional regulator AsnC family | SubName: Full=Transcriptional regulator AsnC family; | chromosome | CDS | 577375 | 474 | + | 0.550633 |
| NA | SYN_02510 | serine phosphatase regulator of sigma subunit | SubName: Full=Serine phosphatase regulator of sigma subunit; | chromosome | CDS | 2453130 | 1239 | + | 0.500404 |
| NA | SYN_00997 | carD-like transcriptional regulator | SubName: Full=CarD-like transcriptional regulator; | chromosome | CDS | 2050386 | 486 | - | 0.440329 |
| NA | SYN_00981 | response regulator with a winged-helix DNA-binding domain | SubName: Full=Response regulator with a winged-helix DNA-binding domain; | chromosome | CDS | 1200162 | 738 | + | 0.544715 |
| NA | SYN_02755 | transcriptional regulator containing an HTH domain | SubName: Full=Transcriptional regulator containing an HTH domain; | chromosome | CDS | 936821 | 1242 | - | 0.495169 |
| NA | SYN_00064 | DNA-directed RNA polymerase beta chain | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 302807 | 4092 | + | 0.478495 |
| NA | SYN_00850 | transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 2532686 | 711 | - | 0.56962 |
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