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Gene list

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COG category: Transcription
Organism: Novosphingobium aromaticivorans DSM 12444, DSM 12444

Number of genes found: 223

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Novosphingobium aromaticivorans DSM 12444, DSM 12444
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Saro_1048 transcriptional regulator, DeoR familychromosome CDS1087170 774 - 0.679587
NA Saro_1592 sigma-24 (FecI-like)chromosome CDS1652488 567 - 0.661376
NA Saro_2816 transcriptional regulator, LysR familychromosome CDS3039664 1152 - 0.71875
NA Saro_2362 Helicase c2chromosome CDS2509800 2724 + 0.681351
NA Saro_0569 transcriptional regulator, LysR familychromosome CDS615911 873 + 0.67354
NA Saro_1028 transcriptional regulator, XRE familychromosome CDS1065625 1395 - 0.675269
NA Saro_0528 RepB plasmid partitionchromosome CDS571140 960 + 0.566667
NA Saro_0307 transcriptional regulator, LysR familychromosome CDS333031 897 + 0.624303
NA Saro_1206 transcriptional regulator, ArsR familychromosome CDS1253875 348 + 0.606322
NA Saro_0297 sigma-54 (RpoN)chromosome CDS319545 1497 + 0.679359
NA Saro_1646 transcriptional regulator, LysR familychromosome CDS1722084 870 + 0.685057
NA Saro_2477 transcriptional regulator, LysR familychromosome CDS2678583 873 + 0.659794
NA Saro_1557 transcriptional regulator, putativechromosome CDS1612743 795 + 0.605031
NA Saro_2029 SOS-response transcriptional repressor, LexAchromosome CDS2162774 705 + 0.658156
NA Saro_1887 transcriptional regulator, LacI familychromosome CDS1993798 1035 - 0.66087
NA Saro_2281 two component transcriptional regulator, winged helix familychromosome CDS2422368 690 + 0.678261
NA Saro_3014 hypothetical proteinchromosome CDS3229409 267 - 0.595506
NA Saro_0974 transcriptional regulator, AraC familychromosome CDS1019333 942 - 0.665605
NA Saro_0527 RepB plasmid partitionchromosome CDS570248 900 + 0.587778
NA Saro_1880 transcriptional regulator, LacI familychromosome CDS1983088 1035 - 0.66087
NA Saro_2178 putative phage repressorchromosome CDS2321554 642 + 0.623053
NA Saro_2144 transcriptional regulator, MerR familychromosome CDS2282709 390 + 0.612821
NA Saro_0784 transcriptional regulator, TetR familychromosome CDS832239 615 - 0.61626
NA Saro_3045 sigma 32 (RpoH)chromosome CDS3260186 900 - 0.625556
NA Saro_2435 transcriptional regulator, AraC familychromosome CDS2618189 846 - 0.663121
NA Saro_2070 transcriptional regulator, XRE familychromosome CDS2209989 573 + 0.680628
NA Saro_2507 transcriptional regulator, LysR familychromosome CDS2710035 954 + 0.650943
NA Saro_1227 transcriptional regulator, LysR familychromosome CDS1279961 909 + 0.661166
NA Saro_0380 ParB-like nucleasechromosome CDS416008 2142 - 0.654995
NA Saro_1072 transcriptional regulator, TetR familychromosome CDS1116409 639 + 0.610329
NA Saro_2907 two component transcriptional regulator, winged helix familychromosome CDS3124029 753 - 0.656043
NA Saro_2921 NusB antitermination factorchromosome CDS3139239 447 + 0.680089
NA Saro_0003 Silent information regulator protein Sir2chromosome CDS2412 720 - 0.668056
NA Saro_2626 two component transcriptional regulator, LuxR familychromosome CDS2842798 624 + 0.653846
NA Saro_0194 transcriptional regulator, BadM/Rrf2 familychromosome CDS201349 441 + 0.696145
NA Saro_2229 GreA/GreB family elongation factorchromosome CDS2369385 477 - 0.595388
NA Saro_2704 putative phage repressorchromosome CDS2940137 810 - 0.6
NA Saro_0207 transcriptional regulator, XRE familychromosome CDS213426 192 + 0.635417
NA Saro_0706 transcriptional regulator, TetR familychromosome CDS747278 648 - 0.643519
NA Saro_3209 transcriptional regulator, ArsR familychromosome CDS3426482 1026 - 0.661793
NA Saro_0149 transcriptional regulator, BadM/Rrf2 familychromosome CDS149630 504 + 0.64881
NA Saro_2364 transcriptional regulator, MerR familychromosome CDS2513062 456 - 0.629386
NA Saro_0469 putative transcriptional regulatorchromosome CDS512851 387 - 0.679587
NA Saro_0476 transcriptional regulator, LysR familychromosome CDS519733 957 + 0.680251
NA Saro_2804 transcriptional regulator, MarR familychromosome CDS3029036 552 + 0.695652
NA Saro_1351 transcriptional regulator, AsnC familychromosome CDS1397513 468 + 0.619658
NA Saro_1650 transcriptional regulator, TetR familychromosome CDS1725915 657 + 0.666667
NA Saro_2468 transcriptional regulator, TetR familychromosome CDS2663813 768 - 0.588542
NA Saro_2176 conserved hypothetical proteinchromosome CDS2320276 870 - 0.575862
NA Saro_0633 putative phage repressorchromosome CDS675176 627 - 0.567783
NA Saro_2122 transcriptional regulator, MerR familychromosome CDS2261421 396 - 0.679293
NA Saro_1948 Ribonuclease Rchromosome CDS2064303 2280 - 0.649123
NA Saro_0609 putative transcriptional regulator, CopG familychromosome CDS656203 477 - 0.672956
NA Saro_0303 two component transcriptional regulator, winged helix familychromosome CDS328963 702 + 0.608262
NA Saro_2937 GCN5-related N-acetyltransferasechromosome CDS3153396 858 - 0.668998
NA Saro_0024 DNA-directed RNA polymerase, beta subunitchromosome CDS23796 4179 - 0.644891
NA Saro_2619 two component transcriptional regulator, winged helix familychromosome CDS2833398 723 - 0.66805
NA Saro_0873 transcriptional regulator, LysR familychromosome CDS928492 888 - 0.69482
NA Saro_1226 transcriptional regulator, IclR familychromosome CDS1279093 750 + 0.690667
NA Saro_1274 response regulator receiver domain protein (CheY-like)chromosome CDS1313066 810 - 0.618519
NA Saro_3142 cold-shock DNA-binding domain proteinchromosome CDS3352715 804 - 0.687811
NA Saro_1712 transcriptional regulator, TetR familychromosome CDS1799103 696 - 0.652299
NA Saro_2066 two component transcriptional regulator, winged helix familychromosome CDS2206348 678 - 0.626844
NA Saro_0141 DNA-directed RNA polymerase, omega subunitchromosome CDS143400 345 - 0.663768
NA Saro_2465 transcriptional regulator, LysR familychromosome CDS2660381 897 + 0.641026
NA Saro_0459 GCN5-related N-acetyltransferasechromosome CDS503393 465 - 0.651613
NA Saro_0625 ParB-like nucleasechromosome CDS669827 1458 - 0.639232
NA Saro_3126 hypothetical proteinchromosome CDS3337366 315 + 0.711111
NA Saro_1936 hypothetical proteinchromosome CDS2051609 480 + 0.635417
NA Saro_1863 transcriptional regulator, IclR familychromosome CDS1964115 801 + 0.674157
NA Saro_1639 transcriptional regulator, LysR familychromosome CDS1714489 930 + 0.686022
NA Saro_0386 two component transcriptional regulator, winged helix familychromosome CDS423854 690 - 0.630435
NA Saro_1043 conserved hypothetical proteinchromosome CDS1081783 588 + 0.680272
NA Saro_2600 transcriptional regulator, AraC familychromosome CDS2808811 1056 + 0.663826
NA Saro_2371 putative phage repressorchromosome CDS2517870 702 - 0.665242
NA Saro_0828 putative transcriptional regulator, AsnC familychromosome CDS880677 312 + 0.628205
NA Saro_3089 transcriptional regulator, LuxR familychromosome CDS3309817 1251 - 0.631495
NA Saro_0626 hypothetical proteinchromosome CDS671305 1074 - 0.672253
NA Saro_1052 regulatory protein, LuxRchromosome CDS1091834 978 - 0.688139
NA Saro_0807 transcriptional regulator, XRE familychromosome CDS858057 1521 - 0.679158
NA Saro_1599 two component transcriptional regulator, winged helix familychromosome CDS1662598 687 + 0.650655
NA Saro_2153 phage transcriptional regulator, AlpAchromosome CDS2294101 246 - 0.601626
NA Saro_2586 cold-shock DNA-binding domain proteinchromosome CDS2791529 207 - 0.594203
NA Saro_0304 transcriptional regulator, LuxR familychromosome CDS329740 849 - 0.634865
NA Saro_0237 DEAD/DEAH box helicase-likechromosome CDS244870 1497 - 0.698731
NA Saro_1885 ROKchromosome CDS1991234 906 - 0.671082
NA Saro_0705 transcriptional regulator, AsnC familychromosome CDS746833 471 + 0.600849
NA Saro_1728 transcriptional regulator, LacI familychromosome CDS1820365 1047 - 0.642789
NA Saro_2550 transcriptional regulator, MarR familychromosome CDS2753448 471 + 0.66242
NA Saro_1441 GreA/GreB family elongation factorchromosome CDS1484877 549 - 0.644809
NA Saro_1236 two component transcriptional regulator, LuxR familychromosome CDS1287299 627 - 0.639553
NA Saro_2659 transcriptional regulator, LysR familychromosome CDS2897751 798 - 0.68797
NA Saro_1510 two component transcriptional regulator, winged helix familychromosome CDS1553514 675 - 0.605926
NA Saro_0521 transcriptional regulator, TetR familychromosome CDS562789 666 - 0.615616
NA Saro_2611 transcriptional regulator, AraC familychromosome CDS2823727 960 - 0.660417
NA Saro_0489 response regulator receiver domain protein (CheY-like)chromosome CDS531406 405 - 0.644444
NA Saro_0503 ribonuclease IIchromosome CDS545339 1386 + 0.690476
NA Saro_2492 NusA antitermination factorchromosome CDS2693350 1635 - 0.655046
NA Saro_1731 transcriptional regulator, BadM/Rrf2 familychromosome CDS1825510 435 + 0.627586
NA Saro_2213 transcriptional regulator, ArsR familychromosome CDS2356571 357 - 0.627451
NA Saro_0451 transcriptional regulator, TetR familychromosome CDS493816 675 - 0.660741
NA Saro_2222 regulatory protein, MarRchromosome CDS2365068 528 + 0.647727
NA Saro_1479 transcriptional regulator, MerR familychromosome CDS1520981 714 + 0.619048
NA Saro_2106 transcriptional regulator, MerR familychromosome CDS2243137 471 - 0.647558
NA Saro_0620 MT-A70chromosome CDS667159 621 - 0.639291
NA Saro_0973 transcriptional regulator, TetR familychromosome CDS1018702 648 + 0.640432
NA Saro_2838 Negative transcriptional regulatorchromosome CDS3064606 603 + 0.684909
NA Saro_1671 transcriptional regulator, TetR familychromosome CDS1752191 606 - 0.70462
NA Saro_1649 transcriptional regulator, AraC familychromosome CDS1725007 912 + 0.669956
NA Saro_1088 conserved hypothetical proteinchromosome CDS1131056 663 + 0.696833
NA Saro_1154 transcriptional regulator, Fis familychromosome CDS1202640 1062 - 0.685499
NA Saro_1566 transcriptional regulator, putativechromosome CDS1623987 768 + 0.621094
NA Saro_0441 two component transcriptional regulator, winged helix familychromosome CDS480687 738 + 0.639566
NA Saro_0028 transcriptional regulator, XRE familychromosome CDS30233 222 + 0.626126
NA Saro_2546 transcriptional regulator, PadR-like familychromosome CDS2749923 645 - 0.702326
NA Saro_2407 regulatory proteins, IclRchromosome CDS2575480 756 - 0.703704
NA Saro_1093 putative transcriptional regulatorchromosome CDS1136291 648 + 0.665123
NA Saro_2454 transcriptional regulator, TetR familychromosome CDS2645737 651 - 0.6298
NA Saro_0133 parB-like partition proteinschromosome CDS136094 948 - 0.666667
NA Saro_0832 NusG antitermination factorchromosome CDS883127 537 + 0.631285
NA Saro_2533 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelAchromosome CDS2734524 2088 - 0.655172
NA Saro_3325 putative transcriptional regulatorchromosome CDS3546220 516 - 0.643411
NA Saro_2445 transcriptional regulator, LacI familychromosome CDS2631403 1014 - 0.649901
NA Saro_1678 transcriptional regulator, LysR familychromosome CDS1762454 957 - 0.669801
NA Saro_2434 transcriptional regulator, IclR familychromosome CDS2617282 819 - 0.655678
NA Saro_0558 transcriptional regulator, TetR familychromosome CDS607023 636 - 0.650943
NA Saro_0933 transcriptional regulator, TetR familychromosome CDS981438 591 + 0.661591
NA Saro_2152 transcriptional regulator, MerR familychromosome CDS2293603 414 + 0.601449
NA Saro_2437 two component transcriptional regulator, winged helix familychromosome CDS2620391 675 + 0.682963
NA Saro_1982 transcription-repair coupling factorchromosome CDS2099682 3495 + 0.655222
NA Saro_0164 transcriptional regulator, GntR familychromosome CDS163049 390 + 0.64359
NA Saro_0351 conserved hypothetical proteinchromosome CDS378931 978 + 0.633947
NA Saro_2204 transcriptional regulator, XRE familychromosome CDS2344797 324 - 0.54321
NA Saro_0120 transcription termination factor Rhochromosome CDS121800 1257 + 0.607796
NA Saro_0599 transcriptional regulator, LysR familychromosome CDS644032 939 + 0.669862
NA Saro_0541 transcriptional regulator, LysR familychromosome CDS590232 915 + 0.661202
NA Saro_1238 transcriptional regulator, LuxR familychromosome CDS1289802 504 + 0.609127
NA Saro_0537 transcriptional regulator, LysR familychromosome CDS586351 927 - 0.644013
NA Saro_0758 transcriptional regulator, AraC familychromosome CDS807011 900 - 0.658889
NA Saro_2416 transcriptional regulator, GntR familychromosome CDS2590210 741 - 0.653171
NA Saro_0121 helicase-likechromosome CDS123162 2568 + 0.65771
NA Saro_1034 transcriptional regulator, TetR familychromosome CDS1072837 615 + 0.658537
NA Saro_1665 two component transcriptional regulator, LuxR familychromosome CDS1745307 924 + 0.647186
NA Saro_1979 DEAD/DEAH box helicase-likechromosome CDS2096600 2058 - 0.651604
NA Saro_1156 phage shock protein A, PspAchromosome CDS1203995 825 + 0.652121
NA Saro_1306 GCN5-related N-acetyltransferasechromosome CDS1350835 504 - 0.674603
NA Saro_0485 sigma-24 (FecI-like)chromosome CDS527833 609 - 0.683087
NA Saro_0827 GreA/GreB family elongation factorchromosome CDS880205 480 + 0.6625
NA Saro_2060 negative regulator of class I heat shock proteinchromosome CDS2200325 1065 - 0.676995
NA Saro_1609 transcriptional regulator, LacI familychromosome CDS1676725 1071 + 0.660131
NA Saro_1336 transcriptional regulator, LysR familychromosome CDS1376843 897 - 0.682274
NA Saro_1807 Ribonuclease IIIchromosome CDS1906007 759 - 0.681159
NA Saro_0954 transcriptional regulator, MerR familychromosome CDS1000009 441 + 0.632653
NA Saro_0023 DNA-directed RNA polymerase, subunit beta-primechromosome CDS19422 4284 - 0.64239
NA Saro_1482 transcriptional regulator, XRE familychromosome CDS1524528 747 - 0.562249
NA Saro_1424 GCN5-related N-acetyltransferasechromosome CDS1465845 534 + 0.649813
NA Saro_1073 transcriptional regulator, MarR familychromosome CDS1117252 459 + 0.633987
NA Saro_2172 helicase-likechromosome CDS2310734 2769 - 0.603467
NA Saro_2235 sigma 70 (RpoD)chromosome CDS2377635 2004 + 0.633234
NA Saro_0992 putative transcriptional regulator, TetR familychromosome CDS1035736 594 - 0.688552
NA Saro_1501 transcriptional regulator, LysR familychromosome CDS1545008 936 - 0.594017
NA Saro_1587 transcriptional regulator, TetR familychromosome CDS1645775 768 + 0.644531
NA Saro_2933 transcriptional regulator, AsnC familychromosome CDS3148778 498 - 0.600402
NA Saro_1494 transcriptional regulator, Fis familychromosome CDS1536757 1725 - 0.584348
NA Saro_0516 transcriptional regulator, TetR familychromosome CDS557175 588 - 0.619048
NA Saro_2971 protein serine/threonine phosphataseschromosome CDS3191032 1692 + 0.687352
NA Saro_3015 putative prophage repressorchromosome CDS3229683 684 + 0.557018
NA Saro_0368 transcriptional regulator, XRE familychromosome CDS402133 231 + 0.645022
NA Saro_2731 transcriptional regulator, XRE familychromosome CDS2958379 501 - 0.532934
NA Saro_1867 transcriptional regulator, AraC familychromosome CDS1968031 939 + 0.659212
NA Saro_1527 regulatory proteins, IclRchromosome CDS1570927 774 - 0.478036
NA Saro_1684 transcriptional regulator, TetR familychromosome CDS1768599 684 - 0.608187
NA Saro_0803 transcriptional regulator, MarR familychromosome CDS853881 474 + 0.628692
NA Saro_3085 transcriptional regulator, TetR familychromosome CDS3305260 648 + 0.683642
NA Saro_0563 protein of unknown function DUF983chromosome CDS611833 444 + 0.65991
NA Saro_2242 Protein of unknown function DUF193chromosome CDS2384388 480 + 0.629167
NA Saro_1541 transcriptional regulator, TetR familychromosome CDS1590650 576 + 0.623264
NA Saro_1704 transcriptional regulator, TetR familychromosome CDS1789351 858 + 0.631702
NA Saro_1683 transcriptional regulator, AsnC familychromosome CDS1768151 471 + 0.63482
NA Saro_2584 DEAD/DEAH box helicase-likechromosome CDS2789231 1773 + 0.717992
NA Saro_1381 transcriptional regulator, MarR familychromosome CDS1428104 441 + 0.666667
NA Saro_0598 transcriptional regulator, AsnC familychromosome CDS643385 513 + 0.658869
NA Saro_2285 putative transcriptional acitvator, Bafchromosome CDS2426541 783 - 0.637292
NA Saro_0353 helicase-likechromosome CDS385089 2802 + 0.643469
NA Saro_2928 sigma-24 (FecI-like)chromosome CDS3143341 564 + 0.661348
NA Saro_0683 protein of unknown function DUF179chromosome CDS722249 561 + 0.682709
NA Saro_0429 GCN5-related N-acetyltransferasechromosome CDS468544 504 - 0.654762
NA Saro_0190 transcriptional regulator, LytR/AlgR familychromosome CDS195378 735 + 0.680272
NA Saro_1627 two component transcriptional regulator, LuxR familychromosome CDS1701688 735 + 0.621769
NA Saro_2527 DNA-directed RNA polymerase, alpha subunitchromosome CDS2730746 1062 - 0.612053
NA Saro_0687 transcriptional regulator, AraC familychromosome CDS724842 882 + 0.64966
NA Saro_0778 transcriptional regulator, TetR familychromosome CDS826510 603 + 0.658375
NA Saro_0227 transcriptional regulator, LytR/AlgR familychromosome CDS234587 798 - 0.635338
NA Saro_2508 transcriptional regulator, AraC familychromosome CDS2710971 1062 - 0.667608
NA Saro_1547 transcriptional regulator, RpiR familychromosome CDS1601033 891 - 0.618406
NA Saro_0416 GCN5-related N-acetyltransferasechromosome CDS455007 555 + 0.659459
NA Saro_1292 DEAD/DEAH box helicase-likechromosome CDS1335055 1395 + 0.660932
NA Saro_1320 transcriptional regulator, LacI familychromosome CDS1363722 1029 - 0.676385
NA Saro_2198 parB-like partition proteinschromosome CDS2337477 1989 - 0.644545
NA Saro_1158 phage shock protein C, PspCchromosome CDS1205116 375 + 0.650667
NA Saro_2685 conserved hypothetical proteinchromosome CDS2924512 981 + 0.674822
NA Saro_1775 two component transcriptional regulator, winged helix familychromosome CDS1872681 732 + 0.637978
NA Saro_1631 two component transcriptional regulator, winged helix familychromosome CDS1706922 684 - 0.615497
NA Saro_0532 transcriptional regulator, TetR familychromosome CDS576491 1275 - 0.621176
NA Saro_1710 putative transcriptional regulator, TetR familychromosome CDS1797170 654 + 0.672783
NA Saro_0124 transcriptional regulator, CarD familychromosome CDS126726 525 + 0.60381
NA Saro_2088 putative transcriptional regulators, CopG/Arc/MetJ DNA-binding domainchromosome CDS2225476 258 - 0.624031
NA Saro_0179 transcriptional regulator, GntR familychromosome CDS183684 645 + 0.657364
NA Saro_2535 GCN5-related N-acetyltransferasechromosome CDS2737946 627 - 0.684211
NA Saro_0978 transcriptional regulator, LysR familychromosome CDS1022068 882 - 0.643991
NA Saro_0546 sigma-24 (FecI-like)chromosome CDS598289 648 + 0.654321
NA Saro_2137 sigma-24 (FecI-like)chromosome CDS2277362 534 - 0.623595
NA Saro_0755 transcriptional regulator, LacI familychromosome CDS802606 1074 - 0.649907
NA Saro_2495 phage shock protein C, PspCchromosome CDS2696022 225 + 0.653333
NA Saro_2769 transcriptional regulator, LysR familychromosome CDS2988513 906 + 0.624724
NA Saro_1722 transcriptional regulator, MarR familychromosome CDS1811416 552 + 0.612319
NA Saro_2765 transcriptional regulator, LysR familychromosome CDS2984834 909 + 0.642464
NA Saro_0854 transcriptional regulator, LysR familychromosome CDS904919 951 - 0.681388
NA Saro_0249 transcriptional regulator, TetR familychromosome CDS259175 717 - 0.623431
NA Saro_2605 transcriptional regulator, AraC familychromosome CDS2816589 1029 + 0.666667
NA Saro_3146 transcriptional regulator, TetR familychromosome CDS3355580 612 - 0.676471
NA Saro_3074 sigma 28 (Flagella/Sporulation)chromosome CDS3293161 735 - 0.669388
NA Saro_1471 transcriptional regulator, TetR familychromosome CDS1511678 660 - 0.578788