Gene list
Applied filters:
COG category: Transcription
Organism: Synechococcus sp. JA-2-3Ba(2-13), JA-2-3Ba(2-13)
Number of genes found: 104
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| Synechococcus sp. JA-2-3Ba(2-13), JA-2-3Ba(2-13) | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | CYB_0568 | putative phycobilisome linker polypeptide | SubName: Full=Putative phycobilisome linker polypeptide; | chromosome | CDS | 578667 | 534 | - | 0.604869 |
| NA | CYB_1354 | response regulator | SubName: Full=Response regulator; | chromosome | CDS | 1422603 | 744 | + | 0.556452 |
| NA | CYB_2078 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | chromosome | CDS | 2174263 | 1044 | - | 0.616858 |
| NA | CYB_2515 | serine/threonine protein kinase | SubName: Full=Serine/threonine protein kinase; EC=2.7.1.-; | chromosome | CDS | 2609449 | 1644 | - | 0.611922 |
| NA | CYB_0232 | sigma factor, putative | SubName: Full=Sigma factor, putative; | chromosome | CDS | 242791 | 462 | - | 0.573593 |
| NA | CYB_1543 | RelA/SpoT family protein | SubName: Full=RelA/SpoT family protein; | chromosome | CDS | 1617330 | 2283 | - | 0.560228 |
| NA | CYB_1515 | tetratricopeptide repeat/protein kinase domain protein | SubName: Full=Tetratricopeptide repeat/protein kinase domain protein; | chromosome | CDS | 1588914 | 3813 | - | 0.623918 |
| NA | CYB_2552 | exoribonuclease, VacB/RNB family | SubName: Full=Exoribonuclease, VacB/RNB family; | chromosome | CDS | 2656486 | 2061 | - | 0.612809 |
| NA | CYB_2066 | GAF/SpoIIE domain protein | SubName: Full=GAF/SpoIIE domain protein; | chromosome | CDS | 2163803 | 1446 | + | 0.591286 |
| NA | CYB_2555 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 2660114 | 882 | - | 0.591837 |
| NA | CYB_1056 | HD domain protein | SubName: Full=HD domain protein; | chromosome | CDS | 1095279 | 618 | + | 0.584142 |
| NA | CYB_2734 | RNA polymerase sigma-70 factor family | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 2827533 | 1101 | + | 0.580381 |
| NA | CYB_0522 | serine/threonine protein kinase | SubName: Full=Serine/threonine protein kinase; EC=2.7.11.1; | chromosome | CDS | 536868 | 1899 | - | 0.622433 |
| NA | CYB_0402 | transcriptional regulator PatB | SubName: Full=Transcriptional regulator PatB; | chromosome | CDS | 415813 | 1653 | - | 0.552934 |
| NA | CYB_0174 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 186762 | 693 | - | 0.582973 |
| NA | CYB_1458 | RNA polymerase sigma-70 factor | SubName: Full=RNA polymerase sigma-70 factor; | chromosome | CDS | 1534649 | 663 | + | 0.598793 |
| NA | CYB_1864 | serine/threonine protein kinase | SubName: Full=Serine/threonine protein kinase; EC=2.7.1.-; | chromosome | CDS | 1945812 | 1971 | + | 0.605277 |
| NA | CYB_2499 | transcriptional regulator, putative | SubName: Full=Transcriptional regulator, putative; | chromosome | CDS | 2593815 | 456 | - | 0.605263 |
| NA | CYB_2520 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 2619379 | 498 | + | 0.572289 |
| NA | CYB_0442 | pspA/IM30 family protein | SubName: Full=PspA/IM30 family protein; | chromosome | CDS | 450944 | 768 | + | 0.566406 |
| NA | CYB_0982 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1017330 | 369 | - | 0.533875 |
| NA | CYB_2489 | RNA polymerase sigma factor, group 3 | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 2585421 | 882 | + | 0.558957 |
| NA | CYB_2501 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 2595567 | 702 | + | 0.623932 |
| NA | CYB_2689 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 2776914 | 810 | - | 0.591358 |
| NA | CYB_2844 | hydrogenase accessory protein HypB, interruption-C | SubName: Full=Hydrogenase accessory protein HypB, interruption-C; | chromosome | CDS | 2939367 | 621 | + | 0.582931 |
| NA | CYB_2296 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 2401039 | 951 | + | 0.587802 |
| NA | CYB_1129 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1167545 | 291 | - | 0.580756 |
| NA | CYB_2330 | peptidase, S24 (LexA) family | SubName: Full=Peptidase, S24 (LexA) family; EC=3.4.21.-; | chromosome | CDS | 2437164 | 660 | - | 0.571212 |
| NA | CYB_2187 | acetyltransferase, GNAT family | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 2292057 | 537 | - | 0.588454 |
| NA | CYB_0766 | acetyltransferase, GNAT family | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 789172 | 513 | - | 0.573099 |
| NA | CYB_0582 | RNA polymerase sigma factor, ECF family | SubName: Full=RNA polymerase sigma factor, ECF family; | chromosome | CDS | 588838 | 624 | + | 0.607372 |
| NA | CYB_2553 | DNA-binding response regulator, LuxR family | SubName: Full=DNA-binding response regulator, LuxR family; | chromosome | CDS | 2659064 | 639 | + | 0.552426 |
| NA | CYB_1270 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1328938 | 360 | + | 0.619444 |
| NA | CYB_0917 | response regulator | SubName: Full=Response regulator; | chromosome | CDS | 953731 | 1026 | + | 0.604289 |
| NA | CYB_0662 | RNA polymerase sigma factor, group 1 | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 675947 | 1086 | - | 0.587477 |
| NA | CYB_1130 | response regulator | SubName: Full=Response regulator; | chromosome | CDS | 1167880 | 1020 | - | 0.563725 |
| NA | CYB_0340 | aminotransferase, classes I and II | SubName: Full=Aminotransferase, classes I and II; | chromosome | CDS | 358767 | 1290 | - | 0.616279 |
| NA | CYB_0249 | DNA-binding response regulator RpaA | SubName: Full=DNA-binding response regulator RpaA; | chromosome | CDS | 264506 | 753 | + | 0.605578 |
| NA | CYB_1242 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 1291088 | 597 | - | 0.624791 |
| NA | CYB_0949 | serine/threonine protein kinase | SubName: Full=Serine/threonine protein kinase; EC=2.7.1.-; | chromosome | CDS | 984929 | 1890 | + | 0.622751 |
| NA | CYB_0859 | transcriptional regulator, LuxR family | SubName: Full=Transcriptional regulator, LuxR family; | chromosome | CDS | 893302 | 264 | + | 0.5 |
| NA | CYB_0634 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 645805 | 192 | - | 0.578125 |
| NA | CYB_1142 | RNA polymerase sigma factor | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 1178803 | 960 | - | 0.582292 |
| NA | CYB_0503 | acetyltransferase, GNAT family | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 514667 | 525 | - | 0.590476 |
| NA | CYB_1321 | acetyltransferase, GNAT family | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 1383698 | 504 | - | 0.619048 |
| NA | CYB_2439 | transcriptional activator TenA, putative | SubName: Full=Transcriptional activator TenA, putative; | chromosome | CDS | 2542402 | 660 | - | 0.569697 |
| NA | CYB_2575 | serine/threonine protein kinase | SubName: Full=Serine/threonine protein kinase; EC=2.7.1.-; | chromosome | CDS | 2678480 | 1353 | + | 0.597931 |
| NA | CYB_0862 | transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 895382 | 714 | + | 0.564426 |
| NA | CYB_2872 | acetyltransferase, GNAT family | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 2969532 | 537 | + | 0.577281 |
| NA | CYB_1178 | RNA polymerase sigma-70 factor family | SubName: Full=RNA polymerase sigma-70 factor family; | chromosome | CDS | 1215658 | 582 | + | 0.575601 |
| NA | CYB_1477 | RNA polymerase sigma-70 factor family | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 1551150 | 963 | + | 0.564901 |
| NA | CYB_2031 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 2133374 | 720 | - | 0.561111 |
| NA | CYB_1088 | transcriptional regulator, MerR family | SubName: Full=Transcriptional regulator, MerR family; | chromosome | CDS | 1125636 | 480 | - | 0.570833 |
| NA | CYB_2646 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2733293 | 1536 | - | 0.610677 |
| NA | CYB_2866 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2965281 | 261 | - | 0.563218 |
| NA | CYB_2856 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 2952637 | 744 | + | 0.577957 |
| NA | CYB_0332 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 349223 | 966 | + | 0.615942 |
| NA | CYB_1316 | transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 1378426 | 345 | - | 0.562319 |
| NA | CYB_1200 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 1244278 | 426 | + | 0.553991 |
| NA | CYB_2001 | response regulator | SubName: Full=Response regulator; | chromosome | CDS | 2106782 | 675 | - | 0.536296 |
| NA | CYB_1928 | transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 2012261 | 366 | + | 0.571038 |
| NA | CYB_1459 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1535308 | 615 | + | 0.622764 |
| NA | CYB_1639 | sensor histidine kinase/response regulator | SubName: Full=Sensor histidine kinase/response regulator; EC=2.7.3.-; | chromosome | CDS | 1706804 | 1242 | - | 0.602254 |
| NA | CYB_1709 | acetyltransferase, GNAT family | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 1792357 | 525 | + | 0.55619 |
| NA | CYB_1194 | WD-repeat/protein kinase domain protein | SubName: Full=WD-repeat/protein kinase domain protein; | chromosome | CDS | 1233137 | 2280 | - | 0.630263 |
| NA | CYB_1343 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 1411475 | 744 | - | 0.619624 |
| NA | CYB_1044 | DNA-binding response regulator, LuxR family | SubName: Full=DNA-binding response regulator, LuxR family; | chromosome | CDS | 1084594 | 690 | + | 0.584058 |
| NA | CYB_0637 | protein kinase | SubName: Full=Protein kinase; | chromosome | CDS | 648160 | 1605 | + | 0.611215 |
| NA | CYB_1522 | serine/threonine protein kinase | SubName: Full=Serine/threonine protein kinase; EC=2.7.11.1; | chromosome | CDS | 1601051 | 1662 | + | 0.605295 |
| NA | CYB_1948 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 2040760 | 1029 | + | 0.526725 |
| NA | CYB_1001 | putative cell envelope-related function transcriptional attenuator | SubName: Full=Putative cell envelope-related function transcriptional attenuator; | chromosome | CDS | 1040370 | 1470 | + | 0.616327 |
| NA | CYB_2139 | fibronectin-binding protein | SubName: Full=Fibronectin-binding protein; | chromosome | CDS | 2231650 | 1830 | + | 0.606557 |
| NA | CYB_1684 | transcriptional regulator, BlaI/MecI/CopY family | SubName: Full=Transcriptional regulator, BlaI/MecI/CopY family; | chromosome | CDS | 1760072 | 435 | + | 0.62069 |
| NA | CYB_1727 | helicase, Snf2 family | SubName: Full=Helicase, Snf2 family; | chromosome | CDS | 1808499 | 2712 | + | 0.531342 |
| NA | CYB_1701 | putative helicase | SubName: Full=Putative helicase; | chromosome | CDS | 1784956 | 2895 | - | 0.626252 |
| NA | CYB_0848 | rrf2 family protein | SubName: Full=Rrf2 family protein; | chromosome | CDS | 881472 | 441 | - | 0.591837 |
| NA | CYB_0726 | GAF domain protein | SubName: Full=GAF domain protein; | chromosome | CDS | 745337 | 1218 | + | 0.573892 |
| NA | CYB_2561 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 2664997 | 741 | + | 0.607287 |
| NA | CYB_2723 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 2815070 | 690 | - | 0.602899 |
| NA | CYB_1974 | RNA polymerase sigma-70 domain protein | SubName: Full=RNA polymerase sigma-70 domain protein; | chromosome | CDS | 2073418 | 837 | - | 0.617682 |
| NA | CYB_1510 | transcriptional activator, putative, Baf family | RecName: Full=Type III pantothenate kinase; EC=2.7.1.33; AltName: Full=PanK-III; AltName: Full=Pantothenic acid kinase; | chromosome | CDS | 1582707 | 765 | + | 0.664052 |
| NA | CYB_0663 | conserved domain protein | SubName: Full=Conserved domain protein; | chromosome | CDS | 677242 | 399 | + | 0.553885 |
| NA | CYB_0128 | pspA/IM30 family protein | SubName: Full=PspA/IM30 family protein; | chromosome | CDS | 141133 | 759 | + | 0.591568 |
| NA | CYB_0266 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 281337 | 279 | + | 0.491039 |
| NA | CYB_0466 | protein kinase | SubName: Full=Protein kinase; EC=2.7.11.1; | chromosome | CDS | 471169 | 2241 | + | 0.59884 |
| csx3 | CYB_0599 | CRISPR-associated protein, Csx3 family | SubName: Full=CRISPR-associated protein, Csx3 family; | chromosome | CDS | 608339 | 969 | + | 0.615067 |
| hrcA | CYB_2369 | heat-inducible transcription repressor HrcA | RecName: Full=Heat-inducible transcription repressor HrcA; | chromosome | CDS | 2475197 | 1170 | - | 0.580342 |
| mfd | CYB_1207 | transcription-repair coupling factor | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 1250050 | 3477 | - | 0.598217 |
| nrdR | CYB_1950 | transcriptional regulator, NrdR family | RecName: Full=Transcriptional repressor NrdR; | chromosome | CDS | 2045913 | 543 | + | 0.546961 |
| nusA | CYB_2245 | transcription termination factor NusA | SubName: Full=Transcription termination factor NusA; | chromosome | CDS | 2350829 | 1374 | - | 0.593159 |
| nusB | CYB_2099 | transcription antitermination factor NusB | RecName: Full=N utilization substance protein B homolog; Short=Protein NusB; | chromosome | CDS | 2193347 | 876 | - | 0.592466 |
| nusG | CYB_1220 | transcription termination/antitermination factor NusG | RecName: Full=Transcription termination/antitermination protein NusG; | chromosome | CDS | 1264105 | 666 | + | 0.59009 |
| petA | CYB_1621 | apocytochrome F | RecName: Full=Apocytochrome f; Flags: Precursor; | chromosome | CDS | 1693688 | 984 | - | 0.615854 |
| recG | CYB_2808 | ATP-dependent DNA helicase RecG | SubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; | chromosome | CDS | 2908804 | 2514 | - | 0.622514 |
| rnc | CYB_0755 | ribonuclease III | RecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; | chromosome | CDS | 777394 | 723 | + | 0.591978 |
| rpoA | CYB_1580 | DNA-directed RNA polymerase, alpha subunit | RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; | chromosome | CDS | 1652911 | 1008 | + | 0.584325 |
| rpoB | CYB_2436 | DNA-directed RNA polymerase, beta subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 2532316 | 3420 | + | 0.607895 |
| rpoC1 | CYB_2437 | DNA-directed RNA polymerase, gamma subunit | RecName: Full=DNA-directed RNA polymerase subunit gamma; Short=RNAP subunit gamma; EC=2.7.7.6; AltName: Full=RNA polymerase subunit gamma; AltName: Full=Transcriptase subunit gamma; | chromosome | CDS | 2535851 | 1884 | + | 0.597665 |
| rpoC2 | CYB_2438 | DNA-directed RNA polymerase, beta'' subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 2537788 | 3915 | + | 0.609962 |
| rpoD | CYB_2206 | RNA polymerase sigma factor RpoD | RecName: Full=RNA polymerase sigma factor SigA; | chromosome | CDS | 2311744 | 1212 | - | 0.561881 |
| scpB | CYB_0114 | segregation and condensation protein B | SubName: Full=Segregation and condensation protein B; | chromosome | CDS | 128097 | 570 | - | 0.563158 |
| sufR | CYB_1406 | iron-sulfur cluster biosynthesis transcriptional regulator SufR | SubName: Full=Iron-sulfur cluster biosynthesis transcriptional regulator SufR; | chromosome | CDS | 1474726 | 717 | + | 0.606695 |
| ureG | CYB_0877 | urease accessory protein UreG | RecName: Full=Urease accessory protein UreG; | chromosome | CDS | 905701 | 663 | + | 0.625943 |
| zam | CYB_2525 | acetazolamide conferring resistance protein Zam | SubName: Full=Acetazolamide conferring resistance protein Zam; | chromosome | CDS | 2626057 | 2301 | - | 0.607562 |
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