Gene list
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COG category: Transcription
Organism: Synechococcus sp. JA-3-3Ab, JA-3-3Ab
Number of genes found: 99
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| Synechococcus sp. JA-3-3Ab, JA-3-3Ab | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | CYA_2028 | conserved domain protein | SubName: Full=Conserved domain protein; | chromosome | CDS | 2043999 | 393 | + | 0.633588 |
| NA | CYA_0061 | RNA polymerase sigma-70 factor family | SubName: Full=RNA polymerase sigma-70 factor family; | chromosome | CDS | 59792 | 582 | - | 0.580756 |
| NA | CYA_1033 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 1050354 | 750 | + | 0.602667 |
| NA | CYA_2262 | protein kinase | SubName: Full=Protein kinase; | chromosome | CDS | 2269929 | 2166 | - | 0.609418 |
| NA | CYA_2633 | putative DNA-binding protein | SubName: Full=Putative DNA-binding protein; | chromosome | CDS | 2650477 | 327 | - | 0.58104 |
| NA | CYA_1125 | transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 1151589 | 345 | + | 0.571014 |
| NA | CYA_1992 | peptidase, S24 (LexA) family | SubName: Full=Peptidase, S24 (LexA) family; EC=3.4.21.-; | chromosome | CDS | 2011735 | 657 | - | 0.596651 |
| NA | CYA_0209 | serine/threonine protein kinase | SubName: Full=Serine/threonine protein kinase; EC=2.7.1.-; | chromosome | CDS | 216419 | 1845 | - | 0.660705 |
| NA | CYA_1490 | RNA polymerase sigma-70 factor | SubName: Full=RNA polymerase sigma-70 factor; | chromosome | CDS | 1496753 | 663 | - | 0.618401 |
| NA | CYA_2474 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | chromosome | CDS | 2483586 | 987 | - | 0.614995 |
| NA | CYA_1214 | DNA-binding response regulator, LuxR family | SubName: Full=DNA-binding response regulator, LuxR family; | chromosome | CDS | 1225785 | 633 | + | 0.578199 |
| NA | CYA_0796 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 805640 | 738 | + | 0.611111 |
| NA | CYA_2635 | RNA polymerase sigma factor, group 1 | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 2651108 | 1086 | + | 0.603131 |
| NA | CYA_2441 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 2451933 | 516 | - | 0.602713 |
| NA | CYA_1293 | putative type III restriction-modification system, Res subunit | SubName: Full=Putative type III restriction-modification system, Res subunit; | chromosome | CDS | 1301518 | 2814 | + | 0.598081 |
| NA | CYA_0905 | acetyltransferase, GNAT family | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 915781 | 669 | + | 0.620329 |
| NA | CYA_2316 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 2319170 | 720 | - | 0.572222 |
| NA | CYA_2699 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 2714420 | 693 | + | 0.593074 |
| NA | CYA_1892 | DNA-binding response regulator RpaA | SubName: Full=DNA-binding response regulator RpaA; | chromosome | CDS | 1899291 | 756 | - | 0.611111 |
| NA | CYA_0513 | transcriptional regulator, MerR family | SubName: Full=Transcriptional regulator, MerR family; | chromosome | CDS | 532955 | 423 | + | 0.534279 |
| NA | CYA_0100 | GAF/SpoIIE domain protein | SubName: Full=GAF/SpoIIE domain protein; | chromosome | CDS | 96917 | 1497 | + | 0.619238 |
| NA | CYA_1213 | exoribonuclease, VacB/RNB family | SubName: Full=Exoribonuclease, VacB/RNB family; | chromosome | CDS | 1223354 | 2052 | - | 0.624269 |
| NA | CYA_0337 | putative transcriptional activator,Baf family | RecName: Full=Type III pantothenate kinase; EC=2.7.1.33; AltName: Full=PanK-III; AltName: Full=Pantothenic acid kinase; | chromosome | CDS | 356210 | 735 | - | 0.684354 |
| NA | CYA_1944 | RelA/SpoT family protein | SubName: Full=RelA/SpoT family protein; | chromosome | CDS | 1954758 | 2283 | - | 0.584319 |
| NA | CYA_1077 | putative cell envelope-related function transcriptional attenuator | SubName: Full=Putative cell envelope-related function transcriptional attenuator; | chromosome | CDS | 1095621 | 1362 | + | 0.625551 |
| NA | CYA_1502 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1510605 | 348 | - | 0.531609 |
| NA | CYA_2195 | transcriptional regulator, AbrB family | SubName: Full=Transcriptional regulator, AbrB family; | chromosome | CDS | 2214617 | 453 | + | 0.529801 |
| NA | CYA_0673 | HD domain protein | SubName: Full=HD domain protein; | chromosome | CDS | 681136 | 624 | - | 0.641026 |
| NA | CYA_2233 | RNA polymerase sigma factor, ECF family | SubName: Full=RNA polymerase sigma factor, ECF family; | chromosome | CDS | 2248277 | 591 | + | 0.622673 |
| NA | CYA_0373 | serine/threonine protein kinase | SubName: Full=Serine/threonine protein kinase; EC=2.7.1.-; | chromosome | CDS | 388505 | 1953 | - | 0.626216 |
| NA | CYA_2298 | response regulator | SubName: Full=Response regulator; | chromosome | CDS | 2301671 | 744 | - | 0.569892 |
| NA | CYA_2037 | RNA polymerase sigma-70 factor family | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 2056745 | 1095 | + | 0.598173 |
| NA | CYA_0736 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 742311 | 909 | - | 0.576458 |
| NA | CYA_0423 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 442169 | 453 | + | 0.653422 |
| NA | CYA_2394 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 2405090 | 780 | - | 0.621795 |
| NA | CYA_0320 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 333689 | 207 | - | 0.570048 |
| NA | CYA_1392 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 1398863 | 732 | - | 0.607924 |
| NA | CYA_0528 | putative phycobilisome linker polypeptide | SubName: Full=Putative phycobilisome linker polypeptide; | chromosome | CDS | 542537 | 564 | + | 0.625886 |
| NA | CYA_0042 | WD domain, G-beta repeat protein | SubName: Full=WD domain, G-beta repeat protein; | chromosome | CDS | 39584 | 2109 | + | 0.63964 |
| NA | CYA_2417 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 2427961 | 951 | - | 0.605678 |
| NA | CYA_1047 | acetyltransferase, GNAT family | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 1066528 | 522 | + | 0.609195 |
| NA | CYA_0233 | fibronectin-binding protein | SubName: Full=Fibronectin-binding protein; | chromosome | CDS | 233619 | 1821 | + | 0.629325 |
| NA | CYA_0162 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 158574 | 369 | + | 0.539295 |
| NA | CYA_2348 | transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 2356031 | 669 | - | 0.596413 |
| NA | CYA_2333 | protein kinase domain/TPR repeat protein | SubName: Full=Protein kinase domain/TPR repeat protein; | chromosome | CDS | 2337765 | 2859 | - | 0.637636 |
| NA | CYA_2756 | protein kinase | SubName: Full=Protein kinase; EC=2.7.1.-; | chromosome | CDS | 2778001 | 1584 | + | 0.63005 |
| NA | CYA_1243 | RNA polymerase sigma factor | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 1254523 | 957 | + | 0.60815 |
| NA | CYA_2336 | response regulator | SubName: Full=Response regulator; | chromosome | CDS | 2341359 | 1035 | + | 0.607729 |
| NA | CYA_1718 | transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 1725323 | 363 | - | 0.606061 |
| NA | CYA_2292 | acetyltransferase, GNAT family | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 2295979 | 624 | - | 0.610577 |
| NA | CYA_2351 | transcriptional regulator, LuxR family | SubName: Full=Transcriptional regulator, LuxR family; | chromosome | CDS | 2358672 | 264 | - | 0.507576 |
| NA | CYA_0597 | RNA polymerase sigma factor, group 3 | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 608382 | 900 | + | 0.56 |
| NA | CYA_0201 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 206915 | 597 | - | 0.624791 |
| NA | CYA_1145 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1169041 | 1539 | + | 0.637427 |
| NA | CYA_2146 | serine/threonine protein kinase | SubName: Full=Serine/threonine protein kinase; EC=2.7.11.1; | chromosome | CDS | 2158113 | 1932 | + | 0.645963 |
| NA | CYA_0738 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 745048 | 174 | - | 0.568965 |
| NA | CYA_2271 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2279868 | 633 | - | 0.63981 |
| NA | CYA_0763 | pspA/IM30 family protein | SubName: Full=PspA/IM30 family protein; | chromosome | CDS | 770446 | 759 | - | 0.617918 |
| NA | CYA_0548 | acetyltransferase, GNAT family | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 562722 | 495 | - | 0.620202 |
| NA | CYA_1758 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 1764135 | 456 | + | 0.583333 |
| NA | CYA_2337 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2342432 | 318 | + | 0.625786 |
| NA | CYA_1252 | GAF domain protein | SubName: Full=GAF domain protein; | chromosome | CDS | 1264886 | 1221 | - | 0.592957 |
| NA | CYA_0927 | DNA-binding response regulator, LuxR family | SubName: Full=DNA-binding response regulator, LuxR family; | chromosome | CDS | 937057 | 672 | - | 0.59375 |
| NA | CYA_0322 | putative helicase | SubName: Full=Putative helicase; | chromosome | CDS | 338498 | 2895 | - | 0.633851 |
| NA | CYA_2859 | serine/threonine protein kinase | SubName: Full=Serine/threonine protein kinase; EC=2.7.1.-; | chromosome | CDS | 2874783 | 1593 | - | 0.632141 |
| NA | CYA_0248 | transcriptional regulator, BlaI/MecI/CopY family | SubName: Full=Transcriptional regulator, BlaI/MecI/CopY family; | chromosome | CDS | 252522 | 435 | + | 0.625287 |
| NA | CYA_2285 | pspA/IM30 family protein | SubName: Full=PspA/IM30 family protein; | chromosome | CDS | 2290125 | 774 | - | 0.587855 |
| NA | CYA_0413 | putative transcriptional activator TenA | SubName: Full=Putative transcriptional activator TenA; | chromosome | CDS | 434337 | 660 | - | 0.595455 |
| NA | CYA_1843 | transcriptional regulator PatB | SubName: Full=Transcriptional regulator PatB; | chromosome | CDS | 1842337 | 1653 | + | 0.549909 |
| NA | CYA_1882 | serine/threonine protein kinase | SubName: Full=Serine/threonine protein kinase; EC=2.7.11.1; | chromosome | CDS | 1888007 | 1674 | + | 0.644564 |
| NA | CYA_1544 | transcriptional regulator, MerR family | SubName: Full=Transcriptional regulator, MerR family; | chromosome | CDS | 1551633 | 468 | + | 0.615385 |
| NA | CYA_1910 | response regulator | SubName: Full=Response regulator; | chromosome | CDS | 1920107 | 675 | - | 0.552593 |
| NA | CYA_1081 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 1099814 | 1029 | + | 0.541302 |
| NA | CYA_0984 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 997798 | 960 | + | 0.621875 |
| NA | CYA_2027 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 2043231 | 690 | - | 0.63913 |
| NA | CYA_1226 | rrf2 family protein | SubName: Full=Rrf2 family protein; | chromosome | CDS | 1236952 | 441 | + | 0.60771 |
| NA | CYA_2066 | RNA polymerase sigma-70 domain protein | SubName: Full=RNA polymerase sigma-70 domain protein; | chromosome | CDS | 2086424 | 834 | + | 0.628297 |
| NA | CYA_1709 | aminotransferase, classes I and II | SubName: Full=Aminotransferase, classes I and II; | chromosome | CDS | 1717994 | 1326 | - | 0.630468 |
| NA | CYA_2174 | acetyltransferase, GNAT family | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 2190749 | 525 | + | 0.60381 |
| NA | CYA_0421 | DNA-binding response regulator | SubName: Full=DNA-binding response regulator; | chromosome | CDS | 440425 | 741 | - | 0.670715 |
| NA | CYA_2069 | conserved hypothetical protein | RecName: Full=NAD(P)H-quinone oxidoreductase subunit M; EC=1.6.5.-; AltName: Full=NAD(P)H dehydrogenase I subunit M; Short=NDH-1 subunit M; Short=NDH-M; | chromosome | CDS | 2088582 | 366 | + | 0.560109 |
| csx3 | CYA_0890 | CRISPR-associated protein, Csx3 family | SubName: Full=CRISPR-associated protein, Csx3 family; | chromosome | CDS | 896418 | 921 | + | 0.623236 |
| hrcA | CYA_2590 | heat-inducible transcription repressor HrcA | RecName: Full=Heat-inducible transcription repressor HrcA; | chromosome | CDS | 2611973 | 1179 | + | 0.612383 |
| mfd | CYA_1763 | transcription-repair coupling factor | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 1767740 | 3471 | - | 0.60242 |
| nrdR | CYA_1083 | transcriptional regulator, NrdR family | RecName: Full=Transcriptional repressor NrdR; | chromosome | CDS | 1104814 | 603 | + | 0.535655 |
| nusA | CYA_0457 | transcription termination factor NusA | SubName: Full=Transcription termination factor NusA; | chromosome | CDS | 472535 | 1368 | + | 0.623538 |
| nusB | CYA_0350 | transcription antitermination factor NusB | RecName: Full=N utilization substance protein B homolog; Short=Protein NusB; | chromosome | CDS | 368586 | 867 | + | 0.619377 |
| nusG | CYA_1778 | transcription termination/antitermination factor NusG | RecName: Full=Transcription termination/antitermination protein NusG; | chromosome | CDS | 1782770 | 672 | + | 0.608631 |
| recG | CYA_2013 | ATP-dependent DNA helicase RecG | SubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; | chromosome | CDS | 2028491 | 2322 | - | 0.647287 |
| rnc | CYA_0804 | ribonuclease III | RecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; | chromosome | CDS | 816711 | 726 | - | 0.61708 |
| rpoA | CYA_1451 | DNA-directed RNA polymerase, alpha subunit | RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; | chromosome | CDS | 1456191 | 996 | - | 0.591365 |
| rpoB | CYA_0409 | DNA-directed RNA polymerase, beta subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 424423 | 3402 | + | 0.620223 |
| rpoC1 | CYA_0410 | DNA-directed RNA polymerase, gamma subunit | RecName: Full=DNA-directed RNA polymerase subunit gamma; Short=RNAP subunit gamma; EC=2.7.7.6; AltName: Full=RNA polymerase subunit gamma; AltName: Full=Transcriptase subunit gamma; | chromosome | CDS | 427924 | 1884 | + | 0.614119 |
| rpoC2 | CYA_0411 | DNA-directed RNA polymerase, beta'' subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 429897 | 3909 | + | 0.635457 |
| rpoD | CYA_2410 | RNA polymerase sigma factor RpoD | RecName: Full=RNA polymerase sigma factor SigA; | chromosome | CDS | 2418526 | 1215 | - | 0.582716 |
| scpB | CYA_2848 | segregation and condensation protein B | SubName: Full=Segregation and condensation protein B; | chromosome | CDS | 2863854 | 555 | + | 0.601802 |
| sufR | CYA_2189 | iron-sulfur cluster biosynthesis transcriptional regulator SufR | SubName: Full=Iron-sulfur cluster biosynthesis transcriptional regulator SufR; | chromosome | CDS | 2208774 | 729 | - | 0.62963 |
| ureG | CYA_0606 | urease accessory protein UreG | RecName: Full=Urease accessory protein UreG; | chromosome | CDS | 614688 | 609 | + | 0.591133 |
| zam | CYA_0181 | acetazolamide conferring resistance protein Zam | SubName: Full=Acetazolamide conferring resistance protein Zam; | chromosome | CDS | 179593 | 2286 | - | 0.62161 |
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