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# Rhodospirillum rubrum ATCC 11170, ATCC 11170

>Rru_A0155 Transcriptional Regulator, TetR family
MSSSRPSPQPPSATDSRPAKEPWSPPTADRRGKRAAILAAARKLFLGEDY
ASVSVESIAAEAGVSKATVYAHFAGKADLFAEVIRDRTSSVFDLDETILA
GAPAERLRVLGLRLLAMISCPDSLAVHRRVMGDGERFPEIREIFFRSGPA
IGHRAVACHLSGMNEKGQLRVPDPELTAELFLGMLKGSAHMRMCLGISDE
TEDERVRRVDEVVRIMMAAYAP
>Rru_A2574 Transcriptional Regulator, BadM/Rrf2 family
MFRINKLTDYAVVLLVDMARTDKVRAAQQIACDTGVPLPTVAKVMKALVR
GNLVISQRGATGGYGLARPACEITVADMIQALEGPVALTACVETTDDACG
LETLCPMHGHWNRVNKRVEEALRTVSLAEMASGPIEAFGLPLAERRAALA
RSLS
>Rru_A3760 regulatory protein GntR
MRDPSPWTPRFAAPPGTLCERLARAIAEDIDSGRLRRGARLPAHRRLAIA
LATSVVTVGRAYDLLERRGLVRGEHGRGTFVIGVATTPLASRLMDKVIRP
EGVADLSLNLPPTMIPPEAFAEAVAALARDGRLPDPSRYPPCAGWPDLRA
AAGAWIAAHRPSAPAEGVLLVNGAQQGIVVSLALAAEPGRPVITEAVTYP
GALAAAALLGRPVVGVALDGEGMLPEALEGALTRHPGALIYLVPVLQNPT
GATMGLGRRLALLDVARRHGVEVVEDDAYALLDEAAPETLYSLDPERVWY
VNSFTKPLGSMLRMGVVVPPSGREAAAIRAIQGTTWTAAPLAAAVLGQWL
GDGTAERVVRGLRAEAASRIAIARAIFPGLCPQGYRGLHLWLPLDEPRAE
RLARRAAAAGIIVTPPLAPVVDSDLAMGVRICLGSLPRESLARTLLVLRG
LVEDEGECAAVV
>Rru_A0692 Response regulator receiver domain protein (CheY)
MSDTVLIIDDDANLLSAMKRQLRGRFAVTTAQSGEEALGLLGAGEAPAVV
LCDMRMGGMNGVETLRKVRDLAPDTVRMMLTGNADTQTAIDAINEGNIFR
FFSKPCTPQVLEAGLEAAVAQYRLVTAERDLLEKTLSGSIRVLMDMLALT
YPRGYARAARLRGWVRKMTRDNNMPHRWQLDIASMLAPLGLVALPEAVLA
KLHRREPLSDEERAMVERSPEAARNVINHIPRLQGVAEIVYLQNRGFDGS
GFPPEGPSGVDIPFDSRLLRILNDLGDVVGDSVPLAGHFAELEANARWYD
GALLRKVRLCLEAPAGKGIKPAFRKLSTDTLIAGMVVSDDVVGEGGRLLL
AALTPVSEAHIERLRNLARLRVIADAIPIIVDERGQPKVG
>Rru_A3139 Transcriptional Regulator, GntR family
MPNFTHNQAIHAGVRLFFRLWPRVERNGISTAIANGWGMAVIKTGDDGDL
GEDARSGAAGEAGSEAAWAPALLSRQIAQTLRTMIATDDLPPGARLRERT
LAERLQVSRTPLREALNILRGDGLVTLTPNRGAVVTVLSSAQVQEKLAVL
GLIEGFGGELACQNASEDEIAEIRALHYDMAAAFERRDRAVYFRTNQAIH
RAIQVAAHNTTLLEVFEQINRQIYRYRYQGSLNAQTWHTALAEHEEIIRL
LSARAAEALGALLRAHVHSTWDKIDWAALTPAVK
>Rru_A0074 Helicase-like
MTDPGTPTRITAVLGPTNTGKTHLAMERMLGHASGMIGFPLRLLARENYD
KAVRRVGASRVALVTGEEKILPPRPSYFICTVESMPIDRRVDFLAIDEIQ
LCGDPERGHLFTERLLNARGREETMFLGAETMAPLIRKLVPGCQFDTRPR
FSQLTYNGHRKLTRLPPRSAVVAFSADDVYAIAELVRRQRGGAAVVMGAL
SPRTRNAQVALYQSGEVDYLVATDAIGMGLNMDVDHVAFAALSKFDGQGQ
RGLSAQEVAQIAGRAGRHMNDGTFGVTGDAGPIAEDTVARVETHAFAPLR
QIFWRNPRLDFRSVEALLKSLGAAPPDEGLMRPRRAEDQQALEILAQDPE
IAQAAVGPQKVGLLWDVCRIPDFRKLRAETHVRLLGQIFRHLTAGNRRLP
DDFVAGHAKRMDRNDGDIHALVDRIAGIRVWTYVSHQGDWLGDPGYWQEA
TRAIEDRLSDALHEKLTQRFVDRRTATLMRRLGERAMLDADVAATDGRVN
VEGHDVGRLEGLTFHAEATGGREGDKAVLNAAQKALRREIGERVQRLAAD
DDPVFSLDPAGQLLWRGAPVARLEKGPEVLRPLVTLPAESLLDAAQAEAV
KTRLEAWVKHHLGTRLKPLFALDLAPLKGAARGLAFQLAENLGTLSRSAA
NEHVDGQVRALSEADRKALARAGVRLGVECLFMPDLLKPDPQRLLAVLWR
IDAGRHGGDVPADGRVSFPVDKRVPHAFYHAIGYRVVGDTAVRVDMIERF
AADVRRLVRDALPAKGKPADVSATPAEAAPETAADSAGAGGDAATPTPVV
DATTPTSVVDATTPTSVVDAAPETPGNAPIDTPAVAVAAVEGPSTEASAE
PTEAPEAAAEAAPEAAVEADRAGEGGEEATAAAGPTGRPAKPEPPQAREG
EVHLPPDMLPPLGIGAEEGVGVLTALGYGVRLEAGALFLRPRRRKVSHGH
GHAHGAGQAPGRSQGGRGRGPAAARPAGEAASAGDPAQERKARPHTAGDR
PPRDGEGRDKASREPRRGSGKGGGYKGDGKGGGGASTTAYSSGPRPARSE
INPDSPFAKLRELMGR
>Rru_A3519 Transcriptional Regulator, MarR family
MAMAMAGASESVCTCASLRQATRHVSRFYDAMLAPSGLGVNQYALLARLA
RLAPCPQHVLADALVMDRSTLGHLLRPLERRELIGVSISKSDRRSRLLAL
TPAGAALLAQARPLWQEAQTRIEAVFGAEALATLRALLTGLAQTDLGPCP
RPPPAAPSSAAVS
>Rru_A1656 conserved hypothetical protein
MVWNDEKIDRLKKLWADGLTTGEIGKEIGVSKNAVVGKAHRLGLKGRPSP
IKRTQKEAKPEPKIRSVVDLSAHTCRWPIGDPREPGFHFCGKPTTPGKPY
CAEHASIAYVSSNRSSKDEDAA
>Rru_A1172 Transcriptional Regulator, AsnC family
MSGGYRDDIDRKLMALLRANARESTAELGRRLGLARSSVHERIARLEREG
VIAGYSVVVGGPPSDDRVQALVQLSVEQKRGRAVVDRLADFPEIVACLAV
NGDYDLVVMAETPRLEDLDALLDDLAGLPGVTRTKSSVVLARKFDRRRPQ
TT
>Rru_A1026 Transcriptional Regulator, MerR family
MTSLAIGALSAQTGVKSPTIRYYEEIGLLPSPPRTDGNRRVYSVETVRRL
KFIRHARELGFEVEAIRQLLALADDPQGSCAPADGIALAHLRDIDSRIDR
LTALRDEVRRMVNECAHGPIGACKVIEVLADHTECLHDHH
>Rru_A3476 Transcriptional Regulator, LysR family
MDTEAVTVFVTAAAAGSLSAAARRLAITPMTATRRLAGLERVLGLRLMQR
TTRAVSLTPEGEAFLPYAQAMVESEAAGRAMLRSAAIGVSGLLRVTTPAA
FGRKIIAPLIPGLLRAHPELRIDLDLNDAVVDIVATGADLAIRIAVLRDS
ALIAHKVAASPRVLCAAPAYLAERGTPRLLADLAGHDCLTQTGTTHWPFQ
ADRRDLKARVNGRFSANGIEALHGACLGGAGIALLALWNVGDDLAAGRLV
RITLEDAAALDLSIWAVYPSARFVLPKLRVFIQALEGALRPAA
>Rru_A3082 Predicted transcriptional regulator
MIKTKPFDAARHLTSPEAQQDLLNDAFASGSASYIADALGVIARARGMTD
VAREAGVTREALYKSLSEDGDPRLTTLLGVARALGVTLTARLD
>Rru_A2882 Sigma 70 (RpoD)
MATKATNTAEAVNTQEEGGDSPLLDSMNAAVKKLVNRGKDRGYITYDELN
NALPPDDVSSEQIEDTMAMLSDMGINVVEDEEEGEASAAPPAEAGEEEPG
REVAATGNVSEDDIGRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGR
EMMIGGICESPLTIRALLQWHDALVDGRMLLRDIIDLDATYGSGAGPDVV
AEGLEDSVVPLSPLALSPARALPKEADEAEEAVTPGRDDDSEDEDEGDDA
KPADGAGDEEAAPSGEDEGDGSENNVSLAAMEQELMPRVLETFEHIATTY
GKLKKAQDQRIAALQKGEEPGAALERKYDKLKLELVGLMEDVHLNNARIE
QLVEQLNALNKGLITQEGKLLRLAERAKIRRDEFLDHYFGREMDPSWRED
VAALPGKGWRDFTTRFADEIKDIRGSIAEIAERSLLPIPEFRRIVSTVQK
GEREASRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTS
RQMLHEIGREPTPEELAEKLQMPLEKVRKVLKIAKEPISLETPIGDEEDS
HLGDFIEDKNAVQPLDAAINSNLRETCTRVLASLTPREERVLRMRFGIGM
NTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN
>Rru_A3398 Transcriptional Regulator, XRE family
MRKGKQADVRPYSSDNPDPLDKEVGRRLRLRRKLLGLSQQQLADAVGITF
QQVQKYERGVNRLSSSRLWDFATILGVSVSFFFEDLEAADVDRTIPRARR
DAQDETITQTTAEDPLVRTETLELCYAFWATTPRVRKRYLDFLKTAATLE
KPLYEAPEGTQVPTPQEIAAERVILPGAAT
>Rru_A2816 Transcriptional Regulator, TetR family
MKPRERLIETAITLFASEGFHATGIDRILAEAGVAKMTLYRHFRSKDDLI
LAALDRHWLVFRHWLEERLAACPATPGPTIETLFDGLAAWQRGQTLQEIR
FQGFLPIHAAGEFGASDHPIHRAAAAQIQSLTTLLDAASQRVGIDAVAAA
QMGLLVVGALTIAHIQSDGRAFEIARHSALTLAQSHPAPLPA
>Rru_A1110 Sigma 32 (RpoH)
MATVAPGLSIGPESNLTRYLQNIRKFPMLAPEEEYTLAQRLRDSGDSEAA
HRLVTSHLRLVAKIAMGYRGYGLPMGEVISEGNVGLMQAVKRFDPERGFR
LATYAMWWIRAAIQEYILHSWSLVKMGTTAAQKKLFFNLRKMKGQLQLMD
EGDMHPDKVTQIATKLGVPEQDVINMNRRLSSPDHSLNAPVRMDGDGEWQ
DWLVDESDDQETTLAESQEMGQRRALLSGALKSLNERERHILTQRRLRDD
PVTLEDLSQHYGISRERVRQIEVRAFEKLQKWMHGAMTGAAPAVAAVAC
>Rru_A1452 GCN5-related N-acetyltransferase
MPQPAPFRLPAVAMPQRPARPLRFPLPPLEAMTARGVALRGETPDDLGFL
RQLYAAGRAVEMRLLNDTWDRETKRDFLEKQFSYQYLHHATYYGDGDFAL
ITLGGRPIGKLYLQWRLAGGLPPEVRVFDFLLLPALRDQGIGSLVLAALL
RLAALHNAAVSLHVEPINPARRLYARFGFQPMGVEGASGALLMGWRDGPL
DPKPRLERST
>Rru_A1914 Cold-shock DNA-binding domain protein
MSTGTVKWFNTTKGFGFIAPDNGGADAFVHITALERAGIHSLNEGQRVTY
DLEMGRTGKMAAINIRLA
>Rru_A2700 NusG antitermination factor
MTARWYVIHVYSGFENKVAQSIREQAIQKGMDSRIEEVLVPTEEIVEVRR
GAKVNAERKFFPGYVLVKMDLSDETWHLVKNTAKVTGFLGGRGRPSPISD
REAERILHQVQEGIERPKPSITFDVGEQVRVCDGPFTSFNGMVEDVDEEK
ARLKVSVSIFGRSTPVELEYSQVEKV
>Rru_A3128 Transcriptional Regulator, AraC family
MPNLTLPFAFVDVADGPIVIAAAGSQGRELVSPPHHHARGQLFGSTRGLV
SVSVEAGVWVVPAIHAVWLPPNHVHWGRSHGPFDGWSVYIAPAACQDLPS
SPCTIRTSGLLREAVLRAATWPLEPFVPLDEQKAHVAAVLLDEIRNLPVE
PFGLPLPRDPRLERIARALIADPADERDFEAWARWAAISPRSLGRRFVTE
TGFTFTAWRQRARLMRSLEMLATDLPVTTIALDLGYATASAFISLFRRTF
GETPAVYRRRF
>Rru_A1714 Transcriptional Regulator, LysR family
MDKSEVTLERLRSFVRVAERGNLSAVARELGLGQSTITRHLRELEEAVGV
ALLSRTTRRVVLTDEGSRYYADSLQILRLVDQAGEEARAARGAPAGTIRL
SCTAALGVLHISGLIFAFQDRYPDIRVDLGLTDERIDLVREGVDIALRLG
PLTDSGLKLRPLGLSRRVLVAAPAYLAARGRPAAPGDLAGHDAITMANVA
GSDVLELRGPDGQRHRVPVGGRLRVDQGLAAREAFRAGRGFGPTHRWLVD
DLVAAGGLEVILPGYTPPAVPLNMLIVPERAAIARVRLLVDFLVERIGQI
PGLETS
>Rru_A1466 Transcriptional Regulator, LysR family
MVPSFRQIRAFLAVARHLKFTRAAEELNVSQPTLTVQINQMEEALSVKLF
DRNKRQVSLTPAGRNLIPLLERVLADMDEVMLASSDLALARRGTVRVAAL
PSVSARLLPVAMVRFKKSHPGIVVRVRDVVGEDIVALVKAEEVDFGVGIR
LTPDRDIKVEDFVSDSICAFFPNGHPLETGPSILTMADCVAYPLILTGRN
SSVRVLFERSMAREGVEVQVAAEANYMSTALGMVRAGLGVAVLPASAVDS
GNAIGLGFKVIDAPWLSRRVGIVRKSGRSLPPVAELFIDALHEVAAGRPD
ANFTSARRPETRRG
>Rru_A1115 Transcriptional Regulator, XRE family
MSNTQNSRLERTRTDLGDFLRRRRESLSPLDVGLPPGRRRRTPGLRREEV
AALAGVGLSWYTWLEQGRDITVSVAFLDNVSRVLKLDETERRHLFVLAHH
RPPAINGRSWCVLPPLVRRLIDDLVLRPCYVLNLRWDVIGWNRAADRLFG
FEARDRAERNMLWMLFSDESLSARIVEWPLQAPQILASFRRDYAQAADDE
DMIGLVTALEQRSPAFRDLWRRHDAHGRCQGRRGFLIDGIGAVAFDHSTF
LIDEEKHLRLVTYAALAGEAASERFEGLLHPPVRSSSPEAAMGSLTAPAP
LAEQTTSPPKAD
>Rru_A2049 Transcriptional Regulator, TetR family
MLHVAWRMFLEKGYEAVSLSDVVSQSGGSKATLYAAFGGKEGLFIAACEE
RCAAFLDKLALSADPLLPVEESLRHFALSLLENLYSDESRDVMRLILGAA
QKFPSVAEAFLERGPGQVRRRLEEYLAWVDRSGLLEIDNPRIAAEVFLSM
VQGRWYLIALDSRRRQVVNDEDLATILEHVRVFIRGYRPRDAGERSKF
>Rru_A1438 Sigma-24 (FecI)
MGAERPFGSLAQAVETYYDDLKAFIVRRTGSPSLAADVVQDTWVRAASAE
IAMPDNVRAYLYRMAANLAIDHLRRDGARARGLCEETLLEDIPSAEPAVD
RVVAARQELAILSRAVAELPEKCRIVFLLYRGRGLTMKQVAARLGISEKA
VEKHIARAMVHCRKRMIDAGRSP
>Rru_A3041 regulatory protein GntR
MDPSPWMPVLPEGRRPLHRAIAEVLEADIAAGRLPPGTRLPPQRDLAWRL
KVTLATVGRAYALARERGLIGGEVGRGTFVLGETTSAGLAPWPPQAGAGE
NGAIDLANTHPAPVAGPGEVAACARALVEAGTGIFAYQPDTAAPDHRDAA
ARWLTAQGVPAGAESVLLSTGALNGVLAALMALARPGDTVLTEALTSPAF
KGMAALLGLRLRAVASDGEGLRPEALEAALERDPSAKLLLCVPALHNPTG
ATLSAERRLSLTALAERFDLTIIEDAVYAPLIENGPPSLKALMPDRVTHV
TSLSKIGLPGLRCGMVVPPTRRREAVLAALRVSCWMAPPPLAAVAARWMD
DGTVTRLIAAQRLAVSERRALADRLLGDRLTCRPPPPAASFLWLALPAGW
RGDDFAHALHRRGVMVTPGEAFTVDTAHAPQAVRLCLGPPSLERLETALT
EVHALLGESPERLGVFL
>Rru_A2335 Transcriptional Regulator, AraC family
MISKLGQSKKSVRPCSSDFDPDHWDGPAVALHVDFSDYEAEVPHHRHRQG
QLIMALHGAVTCTAANGLWIVPPGSAVWIPGGVSHSNQVTANARLSYLFV
EPEAALLPQDCCTLSVSPMLREMILRLADASGHDEPKDHRGRLVRVMLDE
LALMPTGGLKLPVSHHPKIAMIASALAAQPGDRRTLMEWASHVAMSERSL
KRLMIQETGLSFGRWRRQLHLIVALRELASGASVQSVSLSLGYESATAFI
VMFKKALGTTPARYLPNRSPDQEGLGDG
>Rru_A3515 Transcriptional Regulator, LytR/AlgR family
MDDFAYNLRRAETGVLLLADDLTVTAVSPGALSLLGLDKPGALLGRPILD
LHPPPLRPKVAVLLKTARGPSGPAATAVLSLRGGPVLIRASALTGQGETA
FALVLTAVGESRETKEGPSARPAPPGYLRKVPLGLGETTEFVDTAGVIYL
EADGHYSRVHTAFGHSFCPLALAELERRLDPDQFLRVHRSYIVALAHVRA
FRKRESGGLLVMDTGAGDLVPIGRAQVTRLRGLLAI
>Rru_A2630 ROK
MTLRLGLDLGGTKTEIIALDDEGRILLRRRRPSPRAAYGATLDCLAALVT
EAEAELGRQGSVGVAMPGAISPASGLVKNANSHWLNGQRLDHDLAERLGR
PVRVANDADCFALSEATDGAAAGASSVFGVILGTGVGAGIVVNGRLLAGP
NAIAGEWGHMPLPWPGDDERPGPDCYCGLKGCVETFCSGPGLAADHQKST
GHAIEGPALLALAQAGDAQAQASLDRHADRLARALAVVINILDPQVIVLG
GGLGQMPHLYQALPRLWTPWVFSDRVDTRLVAPRHGDSSGVRGAAWLWPP
SSTLETDPHA
>Rru_A3731 Transcriptional Regulator, GntR family
MAEQADGGSGRADGKEQAYRRLRDWIIYSELRPGSAIKERELAERLGVSR
TPLREILQRLHYVGLVDWQPNIGVFVAPIDYGRIREIFEVRLALERAAVS
LATVKATAAQIDDLDALLGRCRQAIDTGEYVTFISLDALFHEKIRDIAGN
AYLATLMDNAHNVALRFWYLYRESLADTYHDIENLGLVVEAMRRRDAPAA
ANAIAAHIVGFLRAFHAQEIDALCRAMAV
>Rru_A0782 conserved hypothetical protein
MSTAVSRILDDLRSRGGLQGRDIANIVDVSTATVSRWSHGKGSPTIRTQT
VIADLRYVVERLSDFYTADETRLWLHSHHPLLNGERAIDLINGDRTEDVL
AVIERLDAGSYI
>Rru_A3187 Two component Transcriptional regulator, Winged helix family
MRVLLVEDEPTLALTLRRVLERAGFAVDLADDGEEALFLGETEPFDAVVL
DLGLPRLDGIGVLRRWRAAGIGVPVLILTARGGWPEKVAGFEAGADDYVT
KPFEMEEVVLRLKALIRRAAGHPSTELVAGPLRLDTTSGRGSVEGRPLDL
TAQEYKILTYLLLRQGQTVSRSDIVDHVYDRDSDRDSNVIDVLVGRLRRK
LGAPLIHTVRGLGYRLEAESAPPDQGALR
>Rru_A0862 Transcriptional Regulator, AraC family
MRELRSSDFFTDRPAVTGMPLEVEVKPVSLQTGMMVSLMSLPSAFEATAY
NDRPFIHFSCLFQGMVDVTFGGGAFRLEPGALLTSYAPEERFHLSFSGPY
RTIELMVTPETLAALAGPQYDRIGDDIHRGFCVHHKANDRRVRDAAARLA
WLMDEGQAPPLLIHAATLEFLAWHLASYRSAEDGEAVPLRERKLLLAARE
RLLQDLSAPPTIAELARETGLNQLKLKRGFKTVFGHSVYGLFQRERMDRA
RLLLQHHGVTETAMMLGYSNVSHFGAAFRKQFGILPREARRGALG
>Rru_A0603 Two component Transcriptional regulator, Winged helix family
MKSHVLIVEDEVSLVTLLRYNLEKEGYRVSEAMDGEEAMTLVAEDQPDVV
ILDWMLPSLSGIEVCRQLRRKPRTRDLPILMLTARGEESDRIRGLNTGAD
DYMSKPFSMPELLARVKALLRRAQPTSAKGTLSYSDVVMDLGAHRVTRGG
RYIHLGPTEFRLLQFLMQNPGAVFSREELLNAVWGPDIYVEPRTVDVHIR
RLRKALNGEASTDLIRTVRAAGYALDTNPVFSQ
>Rru_A2316 Transcriptional Regulator, XRE family
MRKAFMGMRLQRLREERGLTQAALARTLEISPSYLNQMERNQRPLTVPVL
LRINAAFGVDVQLFSEDEEARLIADLRETLSESGTGDTITLSEIKGLAAD
MPMIGHALITLHRRARGATERLEAMAASLGVPAESLGVAPPPMPYEEVRD
FFYDRHNHVAELDEAAERLFLDADLGIGAMDISLERLLRDRHGIRVVIQG
RDDMAGNEHRRFDGDQRVLYLSRALEAGQRAFQMATQLAFLDHSALLDAL
VGSPRLASAEARALARIGLANYYAGALILPYGEFLSAAERLRYDVDLLGE
MFGVGVETICHRLSTLQRSGARGVPFFFIRVDRAGNISKRQSATDFHFSR
VGGTCPLWNVYAAFASPGRVLTQIAQMPDGRTYLWVARTVCHNRGGFGVP
GKTFAIGLGCDLRHADRLVYARGLNLSDASTATPIGAGCKVCERPACPQR
AFPPLGKGLIVDERRSLFEPYRAT
>Rru_A0978 Transcriptional Regulator, MarR family
MWPPFMALPTAVIPRPIPIDYVTFRLDVIVSLAKGDASAVYEQACGLSIR
DLRFLRIAAFDPGLPQGRLVAESYVEKTLVSKTISDLVRRGLLRREIDSQ
DARRVRLFVTAAGQAGVDACEILGRRLEAELMAGIGAEERLIFDRCIDTM
MTNVEAMVARRPQGGGAKP
>Rru_A0516 GCN5-related N-acetyltransferase
MTLIRAARPGDAPFLPQIERSAAVLFRQIPDLAWIVEGPVQSEDRHRQMI
EEGAVWVAVDTTDAPIGFLSAQRLESALHLWELSVDHDHQGRGLGRALVE
VAKGWAIARGYPALTLTTFREVAWNEPFYRSLGFVSLSAGDLTEALRGLL
AKEVEAGLPRDRRCAMRCLL
>Rru_A3287 Sigma-24 (FecI)
MTHRSAPRNGLASASFSQSPAPPVAPGATTSIAPDPDLEDEALACDGSSQ
APSDTEEAREEAETSENQLFENQNRDGGEAPARRRDRESLPPAVFNKLLI
DSLPHMRAFARSLTDDRALADDLAQEAATRALANRDSYHAGTNFRAWIFT
IVRNCFYSEHRRKWRRMEKGNEDAMIRAGAPETQESGLRMEDFKRGFTLL
SEEQREALVLVGACGFDYQQAAEIAGCAVGTMKSRVSRARAELRTMLDED
ALKGDRSDFAKLAKGGFEDQLDRSLGLK
>Rru_A2452 hypothetical protein
MACSRGISRETLKNELECSERTVDRIVDDINNALSADLEIVKAPNNNNEI
CYQLVSHKEENVPGFSFEEVRYLATCRDLAAPYLPEAVIGRINRSLVNLA
LHLEEGQRRSVSGAPITFANKGYIDYGPHAETIKTLNEAIANRRVCSLCY
LPMNERTAKSYRYAPGRIVAMNGVFYVQGHYLDEGSLLPGHFITFLLHRI
TQITPGEEYFHFNAFEDTSRAFGLKWHEPMRRQIHVAADAADYVRDRIWS
ADQTIEEQDDGGIILSVTTTSEKELQAWVWSFGGLAEIITPSSNEESQGQ
DTTASPAPLAADPRVLQD
>Rru_A3229 Two Component Transcriptional Regulator, LuxR family
MKILIADDHELFRDGLRLVLSSLDPALEVVEACTYDEALRLVSTNGDGAE
AFTLILVDLVMPGLPWSEGLQALRLAAPETPVVVLSASEDRKLVRDAVRL
GASGFIPKTSSSRVMISALKLVLSGGMYLPAALLDDEVIVEPVAVQAPAG
GAGGPTGPTASRLTPRQGEVLRLLGQGKSNKEIARVLDLSEGTVKLHVTA
ILKALGVNNRTGAVIAAQRLGLTG
>Rru_A3036 Helicase c2
MSLPPPPLPPAPPARPLPAPPPVPALVTGARGGVMLSPDGEIETLVPGAA
AAERLRLACPMVCHLPAAAQRLQATWFPGYDLLDLHAFVRPARFCAPTPR
GLARALGLPLPTSPEDEARTLVHAAMVLLDDLSRLPDKAKREAHAIALVM
ARGGWPWGRGVLALLDPGDGGGAAGAPRALAVWKDLPEVSEHAPEPPPGN
IPVEPAEARAKLAALLGQGAEARPQQADYASALCVAFQPRATPDWPTLVL
AEAGTGVGKTLGYIAPASLWAERNEGTVWISTYTRNLQRQLDGELDRLYP
DPAEKMRKVVIRKGRENYLCLLNYEEAVGRLGATPQEAVALGLMARWIKA
TRDGDMVGGDFPGWMVDILGRERSLALADRRGECVFSSCDHYDRCFIERA
VRRARRARLVVANHALVLIQAALGGIDDDSRPTRYILDEGHHVFDAADSA
FSAHLSGFEGAELRRWLLGAEEGHRSRARGLRRRVDGLYDQAGPLAADLE
EALDGARALPGPGWAQRLAGGTGRGAIERFLATARTQVLARAPASESAHG
LETDLRPPLPELLDDARAVVAALTDLVVPLKAFVRALVKRLDEEADELDT
PTRARIESVARSIERRALGPAQVWRDMAASIAEDPPADFVDWLELERSEG
REVDIGMHRHWIDPTRPFAATLAARAHGLVVTSATLRDGSGDGEADWLSA
EARAGAPHLGTPAIRASVPSPFDYPATTRVLVITDVKRDDLDQVSAAYRE
LFRAAGGGGLGLFTAIGRLRAVHARIAPALDALGLPLLAQHVDAMDISTL
IEIFRAEEDACLLGTDAVRDGVDVPGRSLRLIVFDRVPWPRPDILHKARR
KAMGGSLYDDRIARLRLKQAFGRLVRRAGDRGVFVMLDSRLPSRLGGAFP
EGVVIERVGLASAVAIVAQSVGSPRGR
>Rru_A2896 Transcriptional Regulator, AsnC family
MATQRVKLDRIDRRILNDLQSDGRMTNVDLAKRAGISAPPCLRRVRALEE
AGFIRGYHADLDAVSLGYNVTVFAHVGLNSQAESDLRAFEDLVASWPEVR
ECHMLAGETDFLLKVVARDWDDYQRFLTSRLTPAPNVGHVKSALAIRTGK
LQPGVPVAETDPDD
>Rru_A1826 Protein of unknown function DUF193
MRCPFCGNGDTQVKDSRPTEDSAAIRRRRFCPACNSRFTTFERVQLRDLV
IVKKDGQRSAFDRDKLARSIRIACRKRPVDEDSIERIVNGIQRRLESSGD
TEINSKAVGELVMEGLRGLDPVAYVRFASVYRNFREAKDFEDFVETLGGS
AD
>Rru_A3010 Transcriptional Regulator, DeoR family
MSDNGASPAGSGKLSKAGRQERIVAELRAGPTLRVSELATTLGVSTETIR
RDLDELEARGLINRTYGGAVRPFGPEPTIRERHQMLVSEREIIAAAAART
ISHGDVLIIGGGATTTHVARRLAAEKRDLKVFTDSFAVATVLAPNPTVEV
FLCPGRYNGQEGCVSGAETIDYIGKIYANHAILGATGLTEDGPNDADIDA
AATYRAMALRATDVTVVADHTKFDRAAISVYCRWPVISRLVTDQRPEGAL
RLILERAGVEVIVP
>Rru_A0679 Transcriptional Regulator, TetR family
MVEQRNRGRPAVPDAVVRESIVGAAQRLLSSGGAAAMTMEGVASEAGIAK
KTLYRFASGRADLIGLLVESWIAPIFPGFEADPQDAAAALERIVYDIAQA
VLSREAVSLFRMLASDADLRNRFLPAYNANGIERSRRELARWLDQQASAG
RLPLPIPAERVADLLLSAVIAEPLRQITLGLREPLPAWDIAPRVADAVRL
IAPGRER
>Rru_A3399 Transcriptional Regulator, BadM/Rrf2 family
MISQKAKYGFRALFALADAEGGQLRIEDIAERQRIPRKFLEQILLDLKHH
GLVVSFRGKNGGYALRRDPKDISFTEVLRLIDGPIAPLPCLSRTAYRACE
DCEGETACRMRLVFGAAYDRMLEVLETTSLGDAMNGRLGGGLSPLIDDTD
TPAAPRALNA
>Rru_A0140 Transcriptional Regulator, AraC family
MKSTDSAYYQNVPRPIGAMSKAYASASVVPMHRHVRGQLIYAVSGVMEVI
SSDYLWLVPPQRAVWMPPGVEHRMRARGDVSLRTLYIHPDVFPEDFSSFP
RTVQVSGLLRELILCAADIPVDYDVDGRDGRLMALLLEEIQWSPEQPLRL
PSPRDQRLTRICEAILANPGDDHGLEGWGKIVGASSRTLARLFQAELGVS
FRCWRQQARILAALPRLAAGEPVTAIAADLGYETPGAFASMFRRLTGAKP
SQYFPH
>Rru_A1856 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA
MAMMRQFELVERVKAYDPNANEDLLNRAYVYAMKMHGSQLRASGDPYFSH
PIDVAGILTRYKLDCASIITALLHDTIEDTEATLEDVRQLFGNDVARLVD
GVTKLTRIQISSDHAKQAENFRKLLLAMSEDIRVLMVKLADRLHNMRTLH
FIRKPEKRARIALETMEIYAPLAERIGMAEIKEELEDLAFRELYPDAKEG
IEARLTFLREQGGTLVPKVIDQLKAALAEHGLTAEITGREKTPYSIWQKM
KRKNISFEQLSDIMAFRITVENLEQCYQALGIIHASYPMIPDRFKDYIST
PKRNGYQSIHTAVIGPERLRIEIQIRTAEMHSVAELGVAAHWSYKQGSPV
MDGRQYRWIRELLEILEHTSSPEEFLEHTKLEMFSDQVFCFTPKGDLIGL
PSGATPVDFAYAVHTQVGDRCVSAKVNGRLVPLRTPLHNGDQVEIATSKA
QTPSPEWERFVVTGKARAQIRKFVRSQRRDQYLILGRQLLERAFKAENYE
MTEKGLDGVLKKFRADSVEDLIVDVGEGQLPAREVVQAVYPGLKMVPKLA
AVVTLGRTKKPRASDDHSFKIKGMIPGMALHFAKCCHSLPGDRIVGIVTT
GKGITIHTIDCDQLEQFSDEPERWLDLAWDAEADSQVHVGRVNVVVANEP
GSLGALTTVIAKNLGNITNLKITNRQQDFFDMIVDVEVKDVRHLTNIIAA
LRATSAINYVERARH
>Rru_A2004 Transcriptional Regulator, LysR family
MDLRQMRYFLAVVDAGSFSAAARALRVAQPALSQSLKRLEDEVGAALLHR
LPRGTLPTEEGLLLAAEGRRLLAEWDGLGGLLRARRDDPAGDLAIGIPTS
LGPVVSLAVARLVARRLPKVRLRLIEGLSGHIMGWLRDGTLDLGLVFNGE
TGGDLGVEPLASECLALIAPAASSLPTPIPLNAAAALPLILPGPPHGLRD
EVERAFASRGLVAKVCLEIDALDPINTLVAEGFGYSILSPRVALQSTGAA
LVRVIPIIDPPITRRIGLAQARLRPPSIALRHALPLLRPLIGRLVRDGAG
VGLE
>Rru_A0720 Transcriptional Regulator, MarR family
MRASSFRPKLGVILTDQYQEMVQLIERLHRHFLDVIRAELRRLNVEDINA
VQALLLHNVGTEDVVIRDLKDRGYYHGSNVSYNIKKLTETGYIAQERSAH
DRRATRLRLTDKGLALCEALRAMQSRLAGLLPDQGLDDSSLSMANGALLR
LERAWTDHIRFGAN
>Rru_A3070 Transcriptional Regulator, AsnC family
MPKSDLDATDRRILAALQRDGRLSNVELAQDVALSPSPCLRRVRRLEDEG
VIRGYRADLDRLKVGLGLTVYMELKVGLHSRANAEGLAAALAAMPEVVSC
AMVSGDADFVAEVVVPDLERYERFLTEHIQTLPMIASIRSNFALRTLKSA
GPLPLPAA
>Rru_A0031 Transcriptional Regulator, LysR family
MRRKIPSNSALMAFEASARHGSFARAADELGLTEGAISRQIGRLEAFLGV
TLFARVGNRVRLLPNGERYAAQVRESLDRLERDSRYLMGQPSDGASLDIA
TIPTFAARWLIPRLARFRQEHPNIIVHLAERMEPFVLAGSGFDAAIHFEH
PAWTGMGTHRLLHETLVPVCHPALLGGGEGAVSLDELPRLHRRQNPDAWQ
RYAQETGLVLTNPAIGPRYDLHIMLIEAALAGLGVALVPRLYIETELAEG
RLIAPWPDGQSISKTFCLILPEPIGLSDGPLQVFAKWLLKEARSANPTP
>Rru_A0525 Two component Transcriptional regulator, Winged helix family
MRVLVIEDDAATARSIDLVLKKEGWVVDTTDSGEDGLEIGKLYDYDILIV
DLMLPDMDGIEVIRHLRASRINTPVLILSGLNESDRKVKGLGVGADDYLT
KPFDKSELIARLQAIVRRSMGHSQSVVTVGQMEVNLDARTVSVAGDPVHL
TGKEYGILELLTLRKGSTLTKEQFLNHLYGGMDEPELKIIDVFICKLRKK
LAQATGGTNYIETVWGRGYVLRDPDDTLPKDGGVKQTAS
>Rru_A1414 regulatory protein GntR
MIMSEPIRATRLAETIADHLERLIAEGALRPGERLLPERELALKLNVSRP
SLRDGLAAMERRGLIVTDRQGSRVAEFLRPLTEPLELLIQNNTQATFDYL
EFRFVVEGAAAEMAAKRATDLDRAAIRAILDRMAAVHGDDDSAAEAEADA
DLHSATYEATYNVMILHIMRGFSQLLRRDVFYNRERLYARPGVRDLLLGH
HQAIGEAIIAGDGPAARRAAEEHITVTRETLEEIRDADARLAMSLRRIGR
RDLVAPER
>Rru_A3067 Transcriptional Regulator, TetR family
MSPSSDTTPRLRLSRADRTRQLLDVAWRLIGEEGTDALTLGRLAEAAGVS
KPVVYDHFGTRNGLLAALYQDYDKRQTDLFDSALATSRPTAQDKAEVIAS
SYVDCVLTQGREIQAVLATLSGSPELAAIKRDYQKAFIDKCAATLAPFGG
AQGLSAAGLWAMLGAAESLSEAAARGDLTKQQAQSELKRLILAMVDPGR
>Rru_A1063 putative transcription regulator protein
MIAFRFPEGVYRWELEKAGRRVTVDPTGPLCVNDHTLLEAASAGAGLACV
LRPRAADWLADGRLRPVLEDWCPAFPGLRLYYPSRRMTAALRAFIETLRL
DQTTFNEPPLARKL
>Rru_A0536 Transcriptional Regulator, AraC family
MADLDDFKIFEHLHSAGVPLRASARFGDGVAAALWERDEHVFQRYETPDH
HTLSLYVDGGTGIRRLAGERLRIGDHAGPGSLCVMPAEVTSDWSVDGPVR
LFHFYIPRVVFNRAVVETLDLDPARVSLRDESFLRDPVLEGMIRSAMLAL
SWNDPAERVALTHAGRALIAYMAARLTDRGARALPAMGGLTPRVVARLRA
FIEANLERALSIDDLAAVADLSPFHFARAFKATLGEPPHAYVQSRRIERA
KTLLRADRLPLAEIALLCGFASQSHFTARFRQATGQTPGRYAREGGGLVS
DVFL
>Rru_A3240 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
MPAVERMTITMPKDLAEALRQTVAGGEYASTSEVVREALRDWMGRRDAQR
PDLETVRAAIKAGLDSGPGIPADQVFAELRARYAAKS
>Rru_A0278 Transcriptional Regulator, XRE family
MDTVSVFTRVGGPTNRASEADRHVGKRIRERRVMLGLSQQQMADMIGVTY
QQAHKYERGINRISAGRLFEIAQVLHVPVNYFFDGLDDEASETLSPRQRM
CLELARNFAMIQNERHQEALSQLARALAAQVSVVEVIEECQAQRA
>Rru_A0099 Serine phosphatase
MILTRALRKMPLGRRLMLTMAIYALAVLVIVVSGWRLVTLVEDYRSTTEV
LDLRMREITAVRDTSSRFLTVITAYADTRDPAIGDDVAFKYGQIGRAAEA
VSLKEDDIEAVLGGLETVLKDSMGNFEDLRALNQRAGQTYHHLGRLAGEV
SGLMAFAQSRMAQAGGSPDPLIARFDQVTALIDEFHIFQRRATGKEAEST
LAAFRDALESASRSRPTEAERLALSLADDRLGQISHELTTLLRLSDSWVG
QSRFLVFVNLEKVTAAIDALDTLGKVREHQLRADLQDKTRATLIFVGSLA
GVVLVLGFLANALVIQSIRRPILALNEVMQNLAGGTLDRAVEGQEAADEI
GAMARTLEIFKLNTRRMNELEVEKREILRRENEEIAQSLAQLDEAHREIS
ALNTRLNSENLRLGAELDVSRRIQQMLLPRDEELSEITALDIAAFMESAD
EVGGDYYDIMKHEGGVRIGIGDVTGHGLESGVVMLLTQSAVRTLTTDGRG
DRASLVDVLNRSLAGNMRRMGSGKNLTFALIDYQPRPEGGGAMRVIGQHE
SLIVIRTDGRVEELDTLMLGMPLGLVDDMRTYLDEAALSLEPGDMVVLYT
DGITEAADTGDRLYGMDRLKATCLAHRTETSGAIKDAVIADVRAHIGERA
VLDDLTLIVIKQR
>Rru_A2377 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
MSTNVHLTPDLERFARDCVEGGRYNNLSEVVRSGLRLLQEAEDRRRRFQS
MVEAAEAEADREGSVDLEGVLAEIDGIIDASRQ
>Rru_A0606 Transcriptional Regulator, LysR family
MGEATAATRLSFDQLRTFVAVAEHLHVTAAARQLGISQSAASASIARLEE
RCGQKLFNRVGRHIELTAAGAIFLSEARAVLDRVGRAEEVLGELSGLRRG
RLRLHASQTIANHWLPPLLHRFHQSYPRIALGIGIGNSRAVARAVVEGRA
DIGFVEGAVSEPLLAPTDLPGDRLLLVVGAGHPWAARTTLAATDLTATPW
VIRESGSGTRQVFEAALAGYGLAMAALEVAFELPSNEAVCAAVEAGAGAT
VISDLVVGRSLRAGSLVALPLAFPERRFQALRHGDRAHGRAEDAFLAMIG
CR
>Rru_A1218 phage shock protein A, PspA
MGIFSRLTDIVNANLNSLIDRAEDPEKMARLMIQEMEDTLVEVRTATVRT
IADRKDLERSLERLEAGGREWGEKAEFALAKGREDLAKAALIAKRKLADQ
AEGARAELKAIDESLAKTNVDLGQLQAKLEEAKAKRKSLEIRMRSAQKRV
DLRRTLHDGRIDEALGRYDSLERRISELEADAESYDLGKTAGVSLDEQFS
ELRAEADVEDELARLKETVARRGAGA
>Rru_A1521 Cold-shock DNA-binding domain protein
MSTGTVKWFNGTKGYGFIEPDDGSADVFVHITAVQQAGLDSLREGQKVAF
ELERGRSGKMAASNLKPL
>Rru_A1728 ATP-dependent DNA helicase RecG
MRPSLLDPLFRPLTSLKGAGKTMAPLIARLIGGDKVVDLLWHLPSGLVDR
RFSPLIAEAPDGVVVTLTVVVEAHQEPPPRSPSPYRVVCRDASGFVTLVF
FHGRARYLNDLLPVGETRVISGKVERFGGAPQIVHPTHVVPLAEAEAVCR
VEPVYPLSGGVAGKVLARLIAQALDDIPDPAAWPDEWIDAPLKAREGWPG
WIDALRAVHAPEEAEDLRPDHPARRRLAYDELLATQLALLLVRRAARTVR
GRPIVGTGALRAKVLAALPFALTGAQSRSLAEIDGDMASPARMLRLLQGD
VGSGKTVVALLTMLTAVEAGAQAALMAPTEILARQHIETLAPLCASAGVR
LGLLTGRDKGRARAALLEALAAGEIDILVGTHALFQDDVVFAALAVVVVD
EQHRFGVHQRLALSDKGRAVDVLVMTATPIPRTLTLTHYGDMDISRLDEK
PPGRLPADTRVLPIDRLDDVIAAVARAIDGGAKVYWVCPLIEDSETGDMA
AAVDRQALLADRLGPRLGPRVGLVHGRMKPGEKDAVMEAFSGNGLDLLVA
TTVIEVGVNVPSATVMVIEHAERFGLAQLHQLRGRIGRGGGRSTCLLLYA
PPLGETARARLETMRRTDDGFEIAEEDLRLRGAGEVLGTRQSGLPVFRLI
DPLLAEDLLAIARKQAEVIVETDPDLAGPHGAALRVLLYLFERDAAVRTL
RSG
>Rru_A0334 Transcriptional Regulator, LysR family
MKNLPTLRQLRYLVTVSETRHFGRAAEICAVTQSTLSAGVQELEGLLGTR
LIERRSRRQVVFTPLGEEIVERARAVLADAEALVDAAQAGSLPLVGDLHL
GVIPTIGPYVLPRLVPALREAYGGLRLFLREEQSANLLSLLNAGRIDAAL
MALPYAVGDLPRVELATEEVVLAMPENHPLAAFDDIAVEKLESETMLMLE
DGHCLREHAMEACHLTRSRGNEAFQATSLSTLVQMVAGGVGVTLMPSIAV
PVEARPGSGVVVRPITGARAARTLALLWRPASPRSRDYRLLADAIGTAIT
GALSDAGRQLAGQRKEAKEA
>Rru_A3411 Transcriptional Regulator, XRE family
MTDIDTLHQEWSQDPAYRAAHEELRPEFELATALIAARARAGLSQAELAE
RMGTTQSAIARLEGGRHWPSRRTLERLAAATGTRVVFKLVDSAGTAI
>Rru_A1809 Sigma-24 (FecI)
MSGRERRGSPVLAEALEKDRARFVRYVRAKLGGAAAEEAEDVVSDLVLRL
VERADLPEQVETMTAYLYRALGNAIIDLFRRRRSRPAAERDFESADAGVL
VDPAPNPEAQVLTREALARIGWALERLSPGERAVWIAVEVEGWTFRALSE
AWGQPIGTLLARKSRATTALRRLLSDERSRG
>Rru_A2711 GCN5-related N-acetyltransferase
MESDLSLSRGGSPVVPGASRPVIIAAEDPAQPDILALLATADAYYRALYP
PESNHLLDVEALRGSDVRFLVARAGGRALGTGALAWRGAFVEIKRMWVDP
AARGLGLGRRMLGALETLARAEGAAVLHLETGVRQPAALALYRSAGFAQT
GPFGDYHPDPLSLFFVKALA
>Rru_A2754 Cold-shock DNA-binding domain protein
MTTGTVKWFNVQKGFGFIAPDDGGSDAFVHISAVERSSDRSPPGYRCRES
RDRKRRWPGASRRHRRRGAT
>Rru_A2603 Two Component Transcriptional Regulator, LuxR family
MRVLLADDHSIIRNALKFILQDLEAEVTFEEAREYPSLEDRLAAEGPPLD
MVVMDLQMPGYEGLAQIRRIVERAAPTPIAVFSMMEAVEDMRAVLRQGVR
AFIPKSTDEALIGTLLKLVAGGGTYVPAQVSGISDCRFPPPLKVVLATDI
RTIGEDFDDNPRLSDLTRRQREVLALMSQGLSNLEIGNRLGLNLSTVKTH
VTGILKALDAGNRTQAVLMARGLDHG
>Rru_A1872 Transcriptional Regulator, TetR family
MDSLLPRLDGASPWIEAALEALADGGATAVRIEALAKRLGVTKGGFYWHF
RDRADLLARVLESWKDGRIVALGAAIGPRGDESPRDCLIRLFVRHLEKPN
LRSLALELAIRDWARADGAAALTVEAVDANRMARVSAVFEAAGFTEPEAR
RRARLFYAMLFGQALVSKVPADDPVDRTARDCVDLLMGGADWAA
>Rru_A2207 conserved hypothetical protein
MDDKERGRYVRALLPVMRAALGQVESRDMTDATGLYLDGVLFALVSGGRL
HFRTDPINREDYDRWEATSGRESEFFSGGLPAGGQKFRVVPPFVLDDGDT
LAQWGRAAWEAAKRARVPAHR
>Rru_A0839 Transcriptional Regulator, AraC family
MRDLAAPHLGIDTPRPILVGRDDRRAPSPAVARGVPPLPGGADPLAGRED
ITIRVWTGPSETEWQLKGEIPPLVCIGVLLDGKLEILPQNGPPLTLRAGT
TVLHAVARPVAGQDTLPRTGAFRLVDVRYGADAFLPILHALAIAAPPPIR
GGGAAAAWDGAIVRQGPTSTAARRVATEILASDGFDDPIRTVYLRAKALE
LLAVVLRDMASGVAESLPLRDRKRVVLALHLLEECYGETWTTARLACRVG
LSEKKLQAGFRQVVGASVHTHLRAMRMAAAMAMLGRGMSVTETAYAIGFS
SLSHFSKAFKDHSGMSPQIWAKQHADA
>Rru_A2225 Two component Transcriptional regulator, Winged helix family
MSDPALPVAPVAPVTEEPPHILVVDDDTRILALLKRFLSERGFIVTAAAD
AAEARRQLAALRFDLLVVDVMMPGESGLELTRSIREDSDVPILILTAMDQ
PDDRVSGLESGADDYLAKPFDPRELVLRVNGILRRLRQAPDLPPAAPPEG
PLPLGACVFDPHRQELLRGDEVVRLTTAETALLSTLAARAGEAISREDLA
ELTGVAGNPRAIDVQVTRLRKKIEADPRVPRHLQTVRGRGYMLRPG
>Rru_A3462 Cold-shock DNA-binding domain protein
MLSRSTATVKWFNATKGFGFVRVSDGEPDAFLHISVLQRAGYSELPEGAT
IVCDLAPGQKGMQVSEIYEVEGGSPGGFGGGGYDRGGYSGGFDRGGYNGG
FDRGAADRGGYAGATDRGGYAGGAADRGGYAGGADRGGFQGETEIDGVVK
FFSADKGFGFVVPDGGGKDVYVGSRTLQDCGVSVLEQGQRVRMSIRMGKK
GPMAGSLELI
>Rru_A1159 Two component Transcriptional regulator, Winged helix family
MAQKILVVDDEPQIRKFMRISLGANGYEVLEAETAEQGVMLATGMAPDLV
VLDLGLPDLDGQDAISMIRTASAVPIIVLSVRSGETDKVEALDRGANDYV
VKPFGIGELMARIRAALRPRAGSGEEGAGEVLTIGALVLDFARRVVTRGG
DEVRLSRKEYDLLRLLAEKADHVLTHRQILRDIWGPAHVEDTAYLRVYVN
QLRQKLEANPSEPRLIVTEPGVGYRLKRGE
>Rru_A0376 Transcriptional Regulator, LytR/AlgR family
MKILIVDDEQLARDELRCLLDGVGDLTIVGECANAIEAIAAINRLSPDVV
FLDIQMPRVSGLEMLSMLDPERMPRIVFLTAYDEYAVRAFEEHAFDYLLK
PTDAARLEKTLQRLRRDHTPQDLKPLEKTRPLTHIPCLGHNRITLLKVGD
VEMVTSKPSGVYVIGPDGEERFTELTLRTLEEKTKLVRCHRQYLVNPERI
KDIAFADNGLAEIVTIAGQTVPVSRRFLAALKEHLGIG
>Rru_A1041 Transcriptional Regulator, LysR family
MDRLTLMETFTKVAELGSFSRAAERLGLSRSVVSKYVSALEDRLGARLVN
RTTRRLSLTEVGEVYLLRCQAILADLEEAEQAAGALHGAARGTLRINAPM
SFGFRHLAAAIPPFLAHHPGLGVDMTLDDRFVDLLDAGFDVAVRIGSLPD
SSLIAVRLAPLHIVVCASPEYIKAQGAPERPEDLTGHNCLIYSLQRFGDL
YPLVHAGGGEQVSVPVHGRFRANNGDALRAAAVAGGGVMISPTFLCGDDL
RAGRLVRLLPEWTGPEQGINAVYPHNRHVSAKVRAFVDHLKGWCGKLPYW
DEGVFP
>Rru_A0722 Sigma-24 (FecI)
MPSPTAPGSTATPASPAPPPSPAADGADHGALIVAIARSGDRAAFATLFT
HYAPRLKSYLRRLGANDASAEEVAQEALLMVWRKAERFDPTKAGAATWIF
TIARNLRIDMLRKERRPEIDPEDPLLEPSSPDAADILIEKDQRETRVRTA
LRSLPADQAEVVRLAFFEDLTHVEVADRLGLPLGTVKSRLRLAFSKVRGS
VGDEVR
>Rru_A0216 Transcriptional Regulator, AsnC family
MPSRTAPLDRASIRLLEALQTNSEVSVAELADLAGLSTSPCWRRINELKA
RGVITRCVAIVDPLALGLAVNVFVHVSLERQDRRSLDVFDAAVRQRPEVM
ECYLMSGESDYLLRVVVEDLIEYQSLMIDFLTRIPGVASIRSSFALSQVK
YTTALPTAHLKRSP
>Rru_A0700 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
MPNIHLTDSMRDYIDGQIRSGAYANLSEVVRAGIRLLMEKDGARQFYALK
AELEAAATAAEAGAFAEFDPQAFEPDAFTS
>Rru_A2490 Transcriptional Regulator, AraC family
MRPIRSVRARTSEWPTGTVIVPHSHPWCQLVYAIGGVTIVETPEGSWVVP
PDRAVWVPAGITHCVRAARGGQNRSVYVTIEAAQAAGLPKGCKVVAVSPL
TRELILEFGRRPDDYDEDGADGRLVRVLLDQIAALPAQPLHLPWPRDPRA
LAVARALEADPADGRPLEEWAREAGASARTLARTFRADCGLTFGQWRLRL
RLLGALERLAAGEAVTAVAFDMGYDQPSAFIAMFRRLLGTTPGAYFR
>Rru_A2233 transcriptional regulatory protein
MKRTNSSKAVAELLTQIGRLSHSHGFTGGLNPAQWMALRYFGQANPSVCT
VMRFADFYGSSRGTASQSISALVRKGYLVRRPSPEKKSSHILEVTDAGRV
LLSQDPIKYLIRGIEGLPASKVADFAESLEILIRHLFKEGDGDDMAIEPS
E
>Rru_A2257 Transcriptional Regulator, LysR family
MDILSGMRLLSRVVEAGSFSEAGRLLGMAPSSVSRQVSALEDTLGTQLLN
RTTRRLSLTEAGGLFHDRALRILADVEDATRVVSSLESAPRGTLKLNVPV
GFGNYHVAPALPLFLARYPDLTVDLTLSDHFIDLIEEGVDVAVRIGALRD
SSLVARRLADNRRMVYGSPDYLRRMGTPETPHDLTAHRCIAYRYRPGPQG
WLFERDGIRLDITVTGPLTANNSESLHKMILGGSGLAMLPTWMAYSDVKS
GLLVPLLGDWTMSPTSLESAIHVVYPESRHLSAKVRAFIDFMADHIGKPP
YWER
>Rru_A3441 Transcriptional Regulator, PadR-like family
MRHLFTHPLGQRFGRGPIGRAFEGLARHGHGFGHGGEGGHRGGGRGGRGG
SMGRFFDHGDLRFVILGLIADKPSHGYELIKAIEDRVGGAYSPSPGVIYP
TLTLLDELGYVTVSTETGPRKLYAITDEGLAFLEANRDTVTAVFARMDEA
GERRGGGTAPQIVRAIENLKLTVRLRLDRGPLSEAETETIAKALDDAAAT
IERS
>Rru_A1456 Transcriptional Regulator, AraC family
MTDLLGKGRSSPTPPLKVGTADWDHLLPSGGGWRETQIPLDEPGRMRFRI
GWLGPSMTVTESQARLGHEVTARIEQPGAVSTLCFGRAGSSLFGFGTDRP
RHVVRAGDIWLFHGDDAVLTRQTPAQDQAVMVALKIPSARMAEVLEGSVR
SGRGTRALRLDQEALSRFSLAPLLDNPLTGPLDRLMAESHALALLARCLA
PLAGGMADEPVDDSRPLARVLDRLMADLGNPPSLEDLARDAGMSHARLNR
CFHRAYGKTVFAWLRDHRLERACRYLRQDGHSITEIAFLCGFSSSSHFAA
AFRQRFGCRPADYRLGKERA
>Rru_A0655 Transcriptional Regulator, AsnC family
MAPAGPSTRSFGDFPEEVSLILRRKQAERLYYQLFGGKRTGMASLDRIDR
RILRELQADGRLSIVELARRVHLTKTPCAERVHRLEREGVIHGYQARLDP
QVLGADHVAFVQVSLKGTTEAELEQFNAAVRGLPEVQSCHMIAGGFDYLL
KVRTRDIAEYRHVLGEKISRLPVVQQTHTYVVMESVKDETTLPVRD
>Rru_A3685 Transcriptional Regulator, AsnC family
MRLCTTFRRKSSEFSWIVPMVALDTLDRKILRALQCDGRITNTELAERIG
LSASACLRRVKRLEDEGVIGGYTAVLDQIALGKPASIFVEITLASQSEAS
LSAFEAAVRVCPEVMECHLMSGSADYLLRFVAADTLDFERIHKIYLTRLP
GVARIRSAFSLRTVSRRAGFPLGD
>Rru_A2482 transcription regulator containing helix turn helix domain
MGILKPIRTPADHAAALARLEALMDAEPGTAEGEDLDVLADLIEHYESKQ
VPIGYPPPHAAIAFRMEQAGLSPQDLVPLIGSQAEVLEVLAGTRPLTLAM
ARALHIHLGIPAEVLLQQQEERPALAP
>Rru_A0330 Transcriptional Regulator, LysR family
MSADLAARHPIRQFDFPIIRYQPLLYHRAMDLRQLRAFLAIVDSGGFSSA
AERLHLTQPALSRQMRLLEEDLGERLLRRTGRGAEATAAGLVLAERARRI
LGEVEGARRALAARGGQVSGRVSLGLPPSVGVRLTAGVVTRLRAAHPLLG
LTIVEELSGVVQDGLGSGWIDIGLLYAGAVGPALVQEPLLTEDLALIGRP
DLLPAADLSAHGAPLALHRLADLPLLLPGRRHGLRALVDQAVFRLGITLD
VAIEADSLRVLGDLAMRGLGLVVHAPSAFAGDLAAGLLAARPLGDPPLTR
SIVLAWPRDRAASRAVLAVAEAVRSEVAALAGEPPL
>Rru_A1975 Transcriptional Regulator, XRE family
MGSPKAKPALERLGQDIRNARLRRGIAVADLAVRAGTSPSSIARLERGDP
GVAIGTLADVLLVLGLLERLADLVDIRKDDLGLALTAEHGPRRGRSFAAR
LRKQKAQAEEKQDRRDVVDPDGASF
>Rru_A3344 Transcriptional Regulator, XRE family
MELGQQIGRKIRTLRERRGLTQSQLASLLGKSGETISNFERGKVVTSIQT
LDQMAKVLNVRLMDFFDGVAVGAADRQHRAERARSSHAQTVRNAADLLPE
EDLEILAGLATLLESRRRREGGKGE
>Rru_A3482 Transcriptional Regulator, MarR family
MSKRLSDSVPGLNAAFTFELSTAGRKMRRLFDGVVREHGLTLSRARALLL
LSGHRTWTQAELADALDVEPPSVVRLLDGLERQGMISRSAVEGDRRAKHI
ELTEPARVQIGHMEEISATVRSRLLEGIDPEDLKIALAVLRQVVSNAEAA
RSDDADLTAPPADGKDHVRAQ
>Rru_A1305 Predicted transcriptional regulator
MTLPTAPFDGADYLSDTETIAHYLTAALEDPDPDVFLLAMGDAVRARGVK
DLAQDSGLGRENLSKAFAPGAKPRFETVLKVARALGAPLEARPLPPPR
>Rru_A0717 phage repressor
MRALKKIAPDKTDGVMTGIHHDGFSARVRSVLEGQSARSFAQKAGIKSST
LQSILRGARPTVDNLVAIASASGVSIDWLATGGAPPPKLSAQDAPDGAAH
PDVFWIPRYDTQLATGDGAFADRAVRTDTIALTAKVLGQGLEGLDLGNCL
FFTVEGDSMAATLNDGDVALIHRETHWRDGLWAFSDGALCRLRRLQFSAE
GVRVINDNREAYPPEFIPAHQWSLSHELVGRVRWAARSF
>Rru_A2372 Sigma-24 (FecI)
MLWPYRKCEAFAFQPREPLPGMGCSSRSVRRKRIVSAVLNAVFESYRRSL
LGKLTRIVQDRQIAEDLTQETYLRVRRAAESGPIDHIEAFLHRTARNLAL
DHLRRTKRRAGMGSSAVEDGAIDDLADDRPSAEEALIERQTLTVLSEAMA
RLPQRARLVLTLSRVEDWPNTKIAAHLGISERTVFNDLKLALGHCRDAMA
RVDKKENGARERLK
>Rru_A1540 Transcriptional Regulator, LysR family
MDSRLHAGIPWVKFRVFNLHSRKRLPMPLPSRPPPPLSDIDIRLLKVFRT
VAECGGFSAAEVELNIGRAAISLHMADLERRLGLRLCRRGRAGFLLTDEG
KRVLDATLRLLAALESFRAEINALHSSLRGDLAIGITDNLVTLPRMRVTD
ALRALKHRAPEVRVSIRMIPPNEIERGVLDGRLQVGVVPRGRRLPGLSEV
ALYDEDSRLFCGEGHPLFALPEAAVSAAQVAAADAVAPTLERHGAAETLH
RGLKVTATATDREGVAFLVLTGCYLGFLPTHYARQWVERGVMRALLPQTH
HYSVEFVAITRKGGHPNLVLETFLGLLFGEGSAP
>Rru_A1529 Transcriptional Regulator, ArsR family
MEVVLSGLRAAAESTRLRLLALCAHGDLTVSDLVRILGISQPRVSRHLKV
MCESGLLERIREGAWVFYRLAPQGVGAEVARSIVGMLPESDPELALDRER
LATIRAARAVEAAAYFRANAAHWDDLRGLFGSDRPVEEALRGYFIDRPLE
DFLDIGTGTGRILDVMSPHAERCVGIDQSREMLAVARANLERAGVRNGHV
RQGDMYALPFAAASFDGIVIHQVLHFAEDPAAVIAEAARVLRPGGRLAIA
DLAPHQREELREEHNHRRLGFSAGEITGWCAGVGLVARDCLDLAGRELVV
RLWVADRPPVATPALRSESAPSVSSSHAAFDQGSSPS
>Rru_A1125 Transcriptional Regulator, XRE family
MSYATDPIAKALKEAREAKAMSQRELSANTGVPQSHISKIERNGVDLRLS
SLIALAHGVGLDLVLVPRQALPAVRVILQSARGQPEKANRPAYRLDEDED
EDDG
>Rru_A1169 Hydrogenase accessory protein HypB
MCSVCGCAPGTDHAPHDHAHDHDHSHDHDHDHSPASQGGGFAAEAGRLIR
IERDVLSINDRFAALNRQRLAGRGILALNLVSSPGSGKTTLLARTVGDLK
DWAPCAVIEGDQQTDLDAERIRATGVSAVQINTGKGCHLDAHRVGHALDS
LDPPEGALLFIENVGNLVCPAAFDLGEAHKVVFLSVTEGEDKPLKYPDMF
AVSDLMVLTKADLLPYVSFDVERCWEYARRVRPDLPILVVSAVSGQGLED
WYAWIRAERAARTPPKDD
>Rru_A2187 Serine/Threonine protein kinase
MMKKADAKGGNGDIYYLGDGKTVKKVLRNTSTEDRRPRFIKEIDVLRKLE
GEGFSNIVKVIDYDIINDNNPWYTMKRYRGDSNIIIDLTRGNACKAAKLL
LPVAETLMRLSERDPPIFHRDLKPENLLVGGSDDDPRLLIADFGCAYFAS
EDDRLTPEFRAVGAANYRAPEYHHGRVEEVTEKGDIFSLGKILWFFINGI
KDDIFPYTLWFPDLYNLSARFQGVAGIAKANLLIAAATHHDAAHRLLYID
FIAQLRSLAEMDIAEENDDDLNVRALMFDEQMRLNTERREKIVTDLLLLF
MSDLSRAIGSLPQFSETTRMREVRGFEINNIVKGVVRQSSNQPVWNYEGQ
SLKIETIIRPYEEWYAVGPLIQPRTEEPFIVFKICAYNQKRHKNNYDIIY
IIDKENGISQIVDNTQIFHDEKNLYSIFEKAVRFVTALPIRIDYE
>Rru_A3059 Protein of unknown function DUF179
MRRCGHGGDVIALPSLAEDPAPDYVAAMPTLLQKHEGYLTGHCLVAMPGM
GDPRFEGTVIYLCAHTAEGAMGIVINRELEEISFPDIVGQLGIQPTPFCD
DVRVQFGGPVETGRGFVLHTSDYQNEGTLSVDDSMALTATLDVLRAIASG
DGPMRVIMALGYAGWGAGQLDGELKGNVWLTVPADRQLVFETAVKDKYTT
AMGRLGIDPRLLSENAGHA
>Rru_A0658 Transcriptional Regulator, LysR family
MIDYPAALAVALVVQTGSFEKAAKALHVTPSAISQRVKMIEDRLGVSLIE
RGTPCIATEKGEWLCRHMDHVGMLEKDLIKHMPGLAEAGADPLHRVTLTL
ATNADSLGTWFLGAVAPFARSTDFLVSIAVDDEDYTADWLHRGRVLAAVT
SLAKPVKGCRVTRLGALRYQATASPEFFERYFARGVTPETLARAPALTFS
QKDRLQRDWIRRTLGQSVSFPTHWLPSTQGFVDACLAGMGWGMNPAQMVG
AHLQAGRLVEILPGRTLDSPLFWQVNRLAADQLADLTRAVVGQASRALIQ
PSAESDPPEV
>Rru_A1067 Cobalamin synthesis protein/P47K
MKLVICAGPATTGKTAVLRHAIGKLIGRGFKPAFLKIDVQYAEEDEQFAR
EFAIPTRKTYSGDLCPDHCTVMVLGEALEWAGRQGADVLLVETAGLCLRC
SPYVDGGLGVIVLEATSGMNLPLKVGPMLSLADVAVVTKIDRISQAEREV
FRARIQDVAPGVRIREANALHGIGIDPLVDQIQATPDVDATLSLRGNPPV
GTCTICVGKKEIGWKAHFGVVRSLENQTFYRGE
>Rru_A1794 Transcriptional Regulator, TetR family
MADLRKSRGDQGEVTREKLLTAALDLFGRRGFDGTSTRALADAAGVNLQA
IPYYFGGKEGLYRETAGAIADAIAARLADRRARIAARLDEATAMGRPIDP
AEARVLLTDVVQTMAGLFVSKESEPWARFLIREQMEPTEAFRQIYGTVMK
PVLDLAGRLVGVLLDEDPVSESVRLRTVSLMGGVLVFRVAHAAALTHLDW
PTIGAREAAVVADLAGDLVASIGPRERRE
>Rru_A2523 Predicted transcriptional regulator
MNALVAALAQQADPYVAQCPTRQVLDRIADKWTVLILGLLVERPYRFNEM
RRAIDGISQKMLSQTLRRLERDGLVLRTVIPTTPVSVDYAITPLGHTLAA
ALDPLFAWITANFAQITVAQSRFDATTAALTARRP
>Rru_A1951 Transcriptional Regulator, AraC family
MVLSRSAVAVFDPDLTDRPAVARQLDFADHQAEVPMHEHRKGQLILALHG
AVTCTADNEIWIVPPNCAVWIPGGVPHSARATANARLTYLFVEPGAAKLP
EECCTLSISPMIREMVDRLAREPADYPSHGHAARLARVALDELVDMPRER
FNLPISGNAKIRAIADALTVDPSDRSTLAEWAKRVAMSERSLARLMIRET
GLTFGRWRQQLHLVVALRQLAGGASVHTVAAELGYESVNAFITMFKKALG
STPAQYFVERRALPPSILKEGRHE
>Rru_A0712 Transcriptional Regulator, XRE family
MTPADFKQWRKLLGLSQKEAAEALGLKRRVVQYYEKGERDGDEVSVPKIV
RLACWALQSGIADYQGPIAAQDAPPAPGKGGAKRGKKAAKAARDSGAESA
TDGAATAADSLPDGAGGSDAPRPLAASGPNEAANAVPAAPIAGEAAPLDD
AAAAPAAESAAPPKRTATRPARAPKTPRKIKARPASPAAKSPAEDGE
>Rru_A1580 GCN5-related N-acetyltransferase
MTLRIRAAEPADVGAIFQVRTAVTENSLTIAQLTEMGITTASITAMIIES
PCAWVAVEGERVVGFSMADLEDGSLFAAFVLPSYEGRGLGKRLVQAAEAA
LFARHRVVWLETGKTTRAAGFYRHLGWANETDHGDGDIRLEKSRP
>Rru_A3779 NusA antitermination factor
MERTVGMSRPELVQVADTVARDKSIEREEVFAAMEQAIQKAGRSKYGHEH
DIRARIDRKTGEIRLARYIEVVEEVENEFTQITLAGAKRKKADIELGEFL
VDPLPPIDFGRIAAQTAKQVIVQKVRDAERERQFAEYKDRLGEIINGLVK
RVEFGNVIVDMGRAEALLRRDEVIPREHFKNGDRIRAYIMDVRQEPRGPQ
IFLSRTHEQFMAKLFAQEVPEIYDGIIEIKSVARDPGSRAKIAVLSNDHA
IDPVGACVGMRGSRVQAVVAELQGEKIDIIQWATDPATFVVNALAPAEVA
KVVLDEEANRIEVVVPDEQLSLAIGRRGQNVRLASKLTGWDIDILTEAEE
SERRQDEFRIRTQAFIEALDVDDVIAHLLVTEGFTTVEDVAFVAIAELSE
IEGFDEDVASELQNRAQVFLAERERLNEERRKELGVVDEMAEIEGLTAAM
LVALGEKGVKTLDDLGDLASDELIEIVGGLNEDDANAVIMAARAHWFGEA
GDSADDATAKTPEQDA
>Rru_A1294 Transcriptional Regulator, Histidine utilization repressor, GntR family
MWKSGPVPLYEAVKRDLLRKIDEGLYAPDARLPSENELVAAYGVSRMTVH
RALRELSQQGVLVRLQGVGTFVRRPRPQAALMEVRDITEEIRGRGHRHDA
TLVTLERLGAPPLVAHALDLAEGAPLFHSLIVHREEGVPVQVEERFVLPA
FAPDYLEQDFLATVGTSTYLLSRGPISELEHVIQAECPDEATRALLDLGG
GEPCLRLVRRTWTGDRPVTYSLLTYPGSRYSLGSRQRLERGRPA
>Rru_A1344 Transcriptional Regulator, IclR family
MDQSEKPDRAADRLFVSSLDKAMRLLGAFSAERPEMGLGDLALAAGLDKS
AAQRFAHTFHSLGYLDKDPVTRRYRPSIKILDLTNAYLWANPLIRAAMPQ
LIDLRQKIGETVNLALLDGESIVYAIRLPNARTSFAATLIGRRAPALNTA
SGRVMIAGFDRQTRQACVETWPLTAHIPTTLLDRPTILGLVEEAAEKGYA
ISENEILLNERDIAAPIRIMGGPRAAVQCSVSAMVWPRARIVADIAPALL
DTANALSQTPLG
>Rru_A3395 Transcriptional Regulator, LuxR family
MMSGGDDILGSFLEALNGTSDSADLTTLLTGTFARLGFPHSCYHVVRLEG
AGARLPYVLHNYKDSWSEHYFREGFLEIDPVLATCPDRQLPFLWSEAIAP
ESLSHDQRRMFSDARDAGLHDGYSVPIRGSHGEFATVTVIPEQGGDAARR
LIGEQKHLVHLLALYFDRHARSTVINARLSSRRRKTVLSPREQEMLRWAA
LGKTSWEIAEIAGISTKSVEFHLDNAKKKLGTYSKTHAVVKALTLGLVTM
DGLAEPSSRG
>Rru_A2664 DNA-directed RNA polymerase, alpha subunit
MSVIQKNWQELIKPNKLMIELVGGSKKVATVVAEPLERGFGLTLGNALRR
VLLSSLQGAAVTAIQIEGVLHEFSSIPGVREDVTDVILNIKGLALLMHSE
GPRRMTLKASGPGEVTAAQIEMGSDIEIMNPDLVICHLDEGATLSMEFTV
GMGKGYVPSTQNRPEDAPIGYIPIDSIFSPVTKVSYRVENSRVGQVTDYD
KLSMVVETDGSVGPEDAVALAARILQDQLQLFINFEEPQAVSEEKKDDEL
PFNKNLLRKVDELELSVRSANCLKNDNIIYIGDLVQKTEAEMLRTPNFGR
KSLNEIKEVLAQMGLHLGMEISNWPPENIEDLAKKLEEPY
>Rru_A2906 Transcriptional Regulator, AsnC family
MPQPHAPATPRSLDAIDRKILAELRANARLTMNDLAERVGLSSSPCWSRV
KRLEESGAIRGYVAVLDAAALGLEIIVFIEVTLDKHDDKALDRFGDALSA
MPEVLESYLVTGDYDYLVKLAVASTHHYEQFLREKLYRIQGIRHTRSTFA
LRELKRLLSVDPLTLPYP
>Rru_A0861 Transcriptional Regulator, MarR family
MSPSDAPLPPIYTAETYDAARNIARHLIDIGTELRAAIDRRSIPLGISGP
QWVVLVRIASGVDTSAAELCRTIGYDSGSMTRMLDRLEKRGLIYRRRSIE
DRRVVRLSLTDLGKELYPQLTPIAIETLNHVLKGFTPEEADILMGLLDRI
LANANTA
>Rru_A0686 Transcriptional Regulator, LysR family
MRFDLIDLALFVHVVEAGSLTAGAGRAHLALASASARIKGMEDLLGAALL
ERGRRGVSPTPAGRMVLHHARVVLDQMERLRGDLGGFSRGWRGVVRLAAN
TAAVTGALADDLGPFLRDQPLIDVDLSERTSARIIAALAEGAVDLGIVSD
AVEAGGLQARPYRRDRLVVVMAPDHPLAACAELSFARVLAEDGVGLGEGA
ALQDYLERQARRLGLSPRLRVRLRGFEAVCRLVAQGIGLAVIPEDAARRA
GAAVAQVPLAEPWATRVLLVRARDFATLAPPARRLADHLAPPFP
>Rru_A1116 Transcriptional Regulator, TetR family
MTRGRRITSDDILEAVERVVLRLGAAGLSIDAVAQEAGVSKSRVVYDHKS
KSALLEALIERHIELEDARIGEAMASARDTPHPELFARIAVAEPEFNEID
KAVAMAISASVTNEDRLQTRLREWTRKDLAAVTHTDRPEAGLLAYLALCG
FYWIELGSFLQWSPDERSRVLEGIRKVFTSYPEP
>Rru_A0921 DNA-binding protein
MREFDALCPPPVREFSAADIKHLREGLKFSQPVFARHLHTTASTVRKWEQ
GETHPSGPALKLLNVIADKGLQAIL
>Rru_A1179 Transcriptional Regulator, DeoR family
MGPLSNDERRAAVLERLRAEGRVGVADLAQVFSTSEDSIRRDLRDMAAAG
LLRRVHGGAIPVSPAQGDFGERARRDGPAKDALGRAAAALIGGGQTVLID
GGTTLLAVARAIPGGLGVTIITSAPAIGLELVDRPGLEVIVLGGRLDRAT
RTVSGAAVVEAVGRINADLCLLGICGLEAGAGVSASDYEEAQVKRAMVAA
SRQVVAVTTADKLGTAAPHWVCPAGRLDKIVMDGVGDEAAIEALALQGVD
MVRI
>Rru_A1029 Transcriptional Regulator, AraC family
MSHSLDSRHMCQNRLSFGQRNILAAAACGIAQGIRAQGADADAVFIKAGV
RESDLGDPRLSLDLGSYVAMFELAAVATGNDNFGLWFGQGFLPPMLGLIG
EIALCSPTLGSALDNLATLFPFHQQATQTRLRRDGTLLRLEYRILDGRII
DRRQDAELTMGMFANVLRAALGPGWRPEEVHFEHPRPEGWAAHGRAFDAD
IHFGQPTNALVFRDRDRERPMPAGDLGRLTRLRDELLSVSGGTGRVPFVE
QVRGETRRLLTEGAPHIEDVAEALGLARWTLQRRLADEGLSFSDVVDDLR
RTLAKRYVSQPHVPLADIAQFLGYSEPSAFSRAFVRWFGISAQQMRRAEA
A
>Rru_A3795 Transcriptional Regulator, BadM/Rrf2 family
MIRLSKKMLFAIEAVLDIAYHAGGEPVQSREITRRQGIPRRYLEQTLQHL
VRSGVLTGVRGPRGGYRLARERRRITIGEIVRVVRDLEAIDEAVDELPGS
DLGRQVVRPLWNELHDELMVKLDTLTVDDLCTRAYRDGIPSEAEKNLDFT
I
>Rru_A2284 Dinitrogenase iron-molybdenum cofactor biosynthesis
MVEAGPDRGSVTGGRMKVALATQDMKTVNAHFNGARHMAIYEVGPDGYSF
VEVIQFDAVSDEDGKHSDDGEDRVRAKVKALDGIALLFVKAIGGPAAARV
VQSRIHPMKIPNDEPIVDVLDRVQTMLKGNPPPWLRKIMTRDGAGENRLD
FLDDEDMAEESL
>Rru_A1717 Transcriptional Regulator, ArsR family
MPAVVNDNARVDDPDADPARMARAEMERRAAEVAGLLKTLSHPLRLMLVC
ALVEGEYGVGALEERLGIGQPALSQHLGVLRAAGLVETRREAKQVFYRLT
DAKAARLVEALYTIFCVEEGTP
>Rru_A2899 Transcriptional Regulator, LysR family
MVWGGSPGSAKAASGKRGMAQRPGNMDWDKLRVFHSVAEAGSFTHAGEAL
NLSQSAVSRQISALEESLKVALFHRHARGLILTEQGELLFDTVHDVFGKL
ATVEAKLGETKERPEGPLTITTTLSFGAIWLTPRIKRFMDRYPDIDVTLA
LNDTELDLAMRQADVALRFMPPRQPDLIQRQLFSMPYHVFASPDYLKKHG
TPRRVEDLDDHALVVYGEEFKPPVANMSWLLTAGTREGRARKPILKVNNI
YGMFRAVESGLGIAALPDYFSSEASTLVKILPEEHGPEMQIFFVYAEELR
HSKRVAVFRDFLIKELGSSGLA
>Rru_A3422 Two component Transcriptional regulator, Winged helix family
MTHSIALVDDDRNILTSVSMTLEAEGFRVVTYTDGAEALRGLSIEPVDLA
VLDIKMPRMDGMELLQKLRERTAMPVIFLTSKDDEVDELLGLRMGADDYI
KKPFSQRLLIERIRAILRRLDLQKASPGGPELSAAALVRGDLTLDPDRHL
CTWLERPVDLTVTEFLIIQALAQRPGHVKSRDQLIDAAYGENIYVDDRTI
DSHIKRLRKKFREVDREFSEIETLYGVGYRYRDPITVKAGA
>Rru_A1900 Transcriptional Regulator, AsnC family
MDALDRRLVRLLQHDASLTNAALADRAGLSPSSCLRRVQRLRDEGVLTRT
VMLADAQKLGRGLTAIVQVFLNHHAHDRRREFLAHVRAEPAITQAWSVTG
EADVILVLHLRDMAEYARLCDLLFEHDPNVTKFQTLFALATYKSETAIGV
DEPADP
>Rru_A0208 SNF2 helicase-related protein
MPGFLTADLIRARLAPKDFQRGEEYLKDGRVLKAEWVADDEISGQVAGSA
GRRYVQTITLENGLGGLSIVGYCSCPVGFACKHVAAVLLTLAREAEPVVP
AWDGSFGARPAQAAVSEPTLDPALAEWIAAVAGFEEVGDPEAYPPAIRHR
LIYVVGPQGEGGVPQNGEGRSESRGGGRVSAEIEVTLWSIAVLKDGQMSS
VERRILSADALVRSPARPAYLRPSDLALVPRLAALRAPGGGNALLLPQIS
GSELFAAMVASGRCRWGGPDGPTLYPGAARRAKLVWRSDGEGWQRPAIEP
EAMAPEAADPETAQPDIGQPYIAQPAIPEIGALDGEAVEAPTRTDPDDAS
PAPEDGESGQSPEAEAWDLRALPIEPPAYVDPRSGETGPLDLGLDPRLAA
RLLSAPPIPPTSVDAVRSRLGALLPAAVPVLPAPIDAQPLSVAPQPILRL
LALRAVPRMRGAEMPGETTQALVARPCFAYDSVILPADSSEPAPLRMVGA
SLMRIERDFAAEGTALRQLDRIGPLRVAEALGRVRVEGGISADRLIAPPF
LPRGEERERAVDFLRDGVPDLEEAGWRIEIDPDFPVRPVVADSQDWWGGL
NAVGGLEGTVGGWLSVGLGVTIDGERVDLLPALLTLLGEGEDLVEREEDE
LLYLPLGDGRVLPVAVRRLRPIFHALHAVAVPDERAGPGVRLSGRDLGPL
ALLEEAGKPLGVVWEGAEGARDIARRLAVVGLREAVAPPKGLVGSLRAYQ
NEGLDWLQFLRANNLGGILADDMGLGKTLQTLAHILVEKESGRLNDPVLI
VAPTSVLGAWRREAAQFAPGLRLVVLHGPERAAGFSQMADQDVVVTSYAL
VRHDLEVLKAQPWHMLVLDEAQTIRNPQTVQYKAVAALKARHRLFLTGTP
LENHLGDLWALMDLLMPGLLGDGATFRRVFRGPIEKRGDGPRRRALAVRV
RPFILRRTKDEVATDLPAKTEMIDMVELEGGQRDLYEAVRLAAHKAIREV
LAEKGLARGRIHILAALTRLRQVCCDPRLVKGGPRKPPPSAKLDRLEEML
RDLVDEGRRTLVFSAFPSMLALVEERLAAASIPWVSLTGETRDRDTPVTR
FQSGAVPVFLISLKAGGTGLTLTAADTVIHYDPWWNPAVEAQATDRAHRI
GQDKPVFVHKLVAAGTVEERILALQDRKRGLLDGLFDGEAGPSSLLSEEV
IEEILRPLG
>Rru_A0302 Hydrogenase accessory protein HypB
MCETCGCAGTGPHHVHGDHAHSHSHGDGHTHDHAHDHGHGHSHDHDHDHG
HGHSHSHDHDHGHSHSHGSASEGTRTVIVLEDLLAKNDHQAAHVRAHFDA
RGILAVNLMSSPGSGKTSLLEATIQALPAGVRVAVIEGDLETENDAERIR
RHGVPAVQITTGTACHLDAHMIHDALHHLDLDGIDIVFIENVGNLVCPAT
FDIGQHRNVVLLSVTEGDDKPAKYPVIMRAADRVLITKADLLPHIEEFDV
ERARASIAGVAGPVPVCVVSSKRGPGMDDWIGWLMAEHAARKPAVA
>Rru_A1821 NusB antitermination factor
MALQDDKPGSAPKERSGRQIRSSAARLAAVQALYVLDLAEDARVDQVVLD
FMSGSMGGMAIVEVADPEGIFDPTEEIAALEPPDGELFAMLVRGAHAELA
RLDEVIGASLSADWPWDRLEPVVRAVLRAGVYELLERQRTPPRVAIKEYV
DIAAAFYSGAEPGMVNAVLDRVARSARPEAFGGGV
>Rru_A0841 Transcriptional Regulator, AraC family
MSITIITPPKTAGIVVKPESRMDVSCIDPQMTLMAGTYCSDTEDWYEEPL
ERGVRLILVQSGRLRCRVPGQPEHLIEGPMLCTIANAGDFTSAQVYDTAR
PLRYTMLQLFDDDLEGRLGWLPDSLRPRRGEDPLMISCPATKAIQALASQ
IATCQMDGPIRDFYLGGKALELAALSVQTLSGAPATGSDESITSAEVERI
HAARAILVEALREPPTLDQLALRVGMNRRKLTLGFRKVFGTSVFCYLQEY
RLREAHRMLCDEEANVSTVAHLVGYSPAHFATAFRKRYGLSPRDIR
>Rru_A1388 Transcriptional Regulator, NifA subfamily, Fis Family
MLMDYTYAIDLDDFVDDSTDCKTGECRVAVLPILFQISQIISESEDLPRS
LAIILKVMQQRMRIGRGTVSLYDRESGKIFVHESFGGRDDQQALGASGPG
RGITAKVVDSGKAIIVPELRDSPTKPNRTQLQADGSDLAVSFFCVPILRG
RKVLGTISAERVYANRRLLKQDVELIATIASMIAPAVELYLLENIDKVRL
ENENRRLHDALKSRFKPTNIIGTSKPMQEVYDLIHKVAMTKATVLILGES
GVGKELVASAIHYNGATAEGPFIKFNCAALPESLGESELFGHEKGAFTGA
IAQRKGRFEMADGGTIFLDEVGELSLAMQAKLLRVLQEKTFERVGGGRSV
RVDVRIIAATNRNLPEMVEKGTFREDLFYRLNVFPITLPPLRDRGSDVIL
LVDHFIARHAAEGGREAKRVSTPALTMLMAYHWPGNVRELENVIERSVIL
SEDGVIHGYNLPPSLQTATETGTSFGCGLEAKLQAVEYEMIVEALKTHGG
NATEAAKELGLTRRILGLRMEKYALNYKTYRKR
>Rru_A2179 Transcriptional Regulator, LuxR family
MTTASPGFDAHLDAACRQAMALGFAAVLYDYSPVPRAHDGTLITPTILET
RNLPVDMAEIWCKQGYYQIDPVQDAALLVSAPFVWSHEGDQSDVMARVLR
AEHRPVLDYLRHRGLTRGVTVPIRCGEGALATFTAIAPSGAPFPPEDRLS
SLGLLGQSFHDRVYPGFPAASHLCPVVHLTRRERECLALCGEGLTAKEIA
YRIDRSVPTVVFHLSAATRKLGARNRFQAIARAAYYRLL
>Rru_A0242 Type III restriction enzyme, res subunit
MSEAFFDRPILNSPYEYPSQHWELDAEGQPTNKIIGSRRRSDLITPVPKP
KKRKKPKTPKEQSGFVFDSGDGLSTAEQEYNPTPIINEIRQHVGSWRSLP
NPSDWLVTPETARLLQHWRHHTFHGVRPFFCQVEAVETAIWLTEVAPKLG
KKGERFWDHIKGANEQANPELLRLALKLATGAGKTTVMAMLIAWQTVNAV
RHPNSKTFSRGFLLVAPGITIRDRLRVLLPNDPESYYRNRELVPADMLAD
TERAKIVITNYHAFKLRERLEISKVGRALLRGRGPELNTLETEGQMIQRV
MPDLMGLKNIVVLNDEAHHCYREKPQNDDLDDLKGEDKEEAKKNNEAARM
WISGLEMVKRTLGLRAIFDLSATPFFLRGSGYAEGTLFPWTVSDFSLMDA
IECGIVKLPRVPVAQNAPGDTLVFRNLWDHIGKKMPKAGRSGGKFLDPLS
LPAELQTALYALYGHYEKTYDLWQQERVEVPPVFIVVCNNTSTSKLVYDF
ISGFYRPGGQEGASFLENGRLALFRNYDDHGNHLPTPRTLLIDSEQLESG
DALDKEFRASAADEIERFRRDIRQRTGDIKRAENITDQDLLREVMNTVGK
KGKLGEQVRCVVSVSMLTEGWDTNTVTHVLGVRAFGTQLLCEQVIGRALR
RQNYELNEETGLFNVEYADVLGVPFDFNAKPVVAPPVKPRETVRVQAVRP
DRDALEITFPRVEGYRVELPDERLVATFTQDSVLDLTPDLVGPSITTNQG
IIGQDVDLTIGHLNNMRQSTILFHLTKHLLYSKFRDPGDEPKLHLFGELK
RITRQWLDDGYLRCSGGTFPAQLVYQGIADMAAERIKAAITLSLVGYHPV
KAILDAYNPTGTTATVNFTTSKPLRWKTDAGRCPINWIVCDSDWEAEFCR
VAERHPLVRAYVKNHGLGFEVPYLFGSIPRRYLPDFIVQVNDGRTDPLNL
IVEIKGFRGEDAKDKANTMHAYWVPGVNNLGKFGRWAFAEFTAVYEIEAK
FNELIASVVADQAA
>Rru_A1219 Sigma54 Specific Transcriptional Regulator containing PAS, and Fis DNA-binding domains
MDTLPPIIGEDPAFLDVIEQASRLAPIDRPCLVVGERGTGKELVAARLHY
LSRRWQGPLVKVNCAALSDTLLESELFGHEAGAFTGAQRRHLGRFERAEG
GTLILDEIANASQAVQEKVLRVIEYGELERVGGAATLRVDVRVIGVANVD
LPKRAAEGGFRADLLDRLAFDVLTLPPLRARPGDILALAEAFARAMAGDL
ERPAPAFSPAARAQLLGHGWPGNVRELRNASERTVARLPREATVIETVVI
DPFASPWCLAAAPAAPPAILSPADGALPPEGQPFAAAVAAYEQGLLRRAL
AAAEGNQGKAAQALGLGYHQFRRLLARHGLGPGAER
>Rru_A0251 Transcriptional Regulator, AraC family
MQKKPLREVIAAPLDRAFRVYSHGYPFQFSGWHYHPEYELHAIRRSSGLC
YIGTYAGPFETGNLILTGPNLPHVWVTDADGYGDGRQGDFIPDRDLVMQF
SGAFAEKCLESFADCADLRVLLAQASAGILFSEAVGEPVARMMEDLRERS
GPGRLALFFDILDRLLADKARQPLSVEWQSYQCLQPKRLDNILKFIAENY
NRADLTCGEVARREAMELSAFSRFFERHISCTCIEYINRLRIYKACQLLI
ETENRITMVAYEVGYDTLSTFNRNFQRYIGSSPSAFRAHRRYGLMRSAHQ
IKKASAGGA
>Rru_A0386 Transcriptional Regulator, ArsR family
MKEGPDISQVATLIGDPARANMLTALMAGKALTAGELAGEAGITLPTASG
HLRKLETGGLILARKQGRHKYFTLAGPEIAHLLEVLMGFASARGHLRTRT
GPRDGALRGARVCYNHLAGEAGVQMFDAMMAREYLGLAAQGLTVTDSGRR
FVTDLGIDLDGLQAKRRPLCRECLDWSERRSHLAGSLGRGLFELMLRENW
LEKTPGTRIVTFRPSGLKRFTDLFGPPPPL
>Rru_A1915 DEAD/DEAH box helicase
MTEFASLDLIEPLARAVTALGYTVATPIQAGAIPPQLLGRDVLGIAQTGT
GKTASFVLPLLQRLTKDPQPRVPGRPRALILTPTRELAQQITESIGDLGR
TLSAIRCGVVVGGVDILRQTRMVQRGLEILVATPGRLQDLMNRKAVDLRA
IEVLVLDEADRMLDMGFAPAVKKIAAVLPRKRQTVMFSATLPNEVTGLVA
SLMNDPVRVEVAPAASVANRIDQRVLFVEQTNKRKLLLDLLGDARKVERA
IVFTRTKHGANKLGIFLLEYGVKSDVIHGNKSQGARQRALNDFKSGKVRA
LVATDIAARGIDVDGITHVINFDLPNEPESYVHRIGRTARAGAAGIALSL
CAPQEMPYLKAIEKVIKSRIDVDSTHAFHTPSMARAHGSHGHR
>Rru_A1934 Transcriptional Regulator, TetR family
MTRWKTTDLDSAALFQRKRDAVIHEAAQAFSRFGYHGTSLDDIARVLNVT
KAALYYYVASKQELLAHCHAIGLGICEASLADGRAKATSGLDAIDGFVRA
YVDRATGELGVCLLIGDLSCLAPAARTEVMARRDAFEGSLRDLIRAGRED
GGIRPDVDPKLSCFQILGALNHIPRWYSPTGPNSPAELAQYFARQIHASL
SI
>Rru_A1255 Transcriptional Regulator, GntR family
MKPPPPLDLPQIDRQPRETVNQWVYRRLRLAVMIGRIPPGRPLTIRDLAL
ALEVSTMPVREALRRLASERALEVRDNRRIEVPVMTALKFRELCEARIAL
ECHAAERALPFITADRLALLAGLDAQIDAAQAAGDRDALTLHNQAFHRAL
YETNPHQVVLPLIESVWLQLGPFTRLALARLDEFYHVDRHSEALAALRSG
NPLALRVAIEADIRDGILQVGTTELLNAYIAAGATLGTETAFGR
>Rru_A2444 Transcriptional Regulator, TetR family
MAVSESAARRIGRPDAQASETLDRLILATATQSFIDHGYAATSIEKVAAQ
AEVGKQTIYRRYRSKEELFKASVGALIGSLLTRADAAAKFSADPLAALRE
ACATFLETVARPDSIAMYRILIAESRRFPTLADHALESTSEPFHAIIRRL
LDAAARAGRLRADHDLDLLSRILIGMVSGWALNQWLLGGQALSTEAERAA
FLDTALSIFLNGVVIDR
>Rru_A1386 DEAD/DEAH box helicase
MDFFPAGHPLTQALIERNYTEPTAVQTAVLEPGAQGRDLLVSAQTGSGKT
VAYGLAIASTLLGDEAVLEPATEPLALIVAPTRELALQVHRELAWLYGHA
GAKVVSCVGGMDPRAETRRLGEGCHIVVGTPGRLRDHLERGNLAVGRLKA
VVLDEADEMLDLGFREDLEFLLEATPQERRTLLFSATLPKAIVTLAKRYQ
REAWRIAVAAGKQGHADIEYRAISVAPNEVEHAVVNLLRYVESPATLVFC
NTRESVRHLQAILLERGFAAVALSGELGQGERNQALQALRDGRARVCVAT
DVAARGIDLPNIGLVIHAELPQNAQTLQHRSGRTGRAGRKGISVLLVLFS
RKRRAEQLLETAGVRAQWGGAPSADDIRALDQERLLQSPLVSEDLTEDDL
AMAKALLAVRSPEEIAAALVRMYRAQLPAAEDVFAAGTAEPSPEPRARRP
ASRDRDRDGEREPMTEPRPGRNSGLSGPSVCFRLNVGRQKNADPRWLVPM
ICRLGKITKQEIGAISIFERDTKIEIAAAFAERFIAAVGQVERGDIRIDP
WVETSRSKPVDALEVATAGDEAAAAAPRASAPRAPRASEPRVTKPYEPRA
PRSTEPRAPRAARSADRPTEARAPRTAEPRPPRASDRASEPRAAKAPRRT
EKPAVGKAMVKTWGKPKPGSRPKTKQK
>Rru_A2442 Transcriptional Regulator, XRE family
MEGLLMIARTPKQIGAAIRRQRRKLALTQADLGEQTKLRQATVSAVEAGE
PGTQIRTLCDILAALDLEFVIQPRTKASVDEIGDIF
>Rru_A0888 Transcriptional Regulator, TetR family
MGRPASDTRQKLIDTALELMWTNSYGTVSVDDICKAADVKKGSFYHFFPS
KVDLSIAAMEQSHHELEETYDKIFSPAVPPIERFMRMADCVIALQAEVAE
KYGHVCGCPCASLGSEMAGQEDGIRAKFEDLAHRKERYYENALRDMVGDG
LLAPTTDVKVLAQEIYTYLVGQMMIARIQNDLAPLKRDLKRGLARLLGVV
EPA
>Rru_A3003 Transcriptional Regulator, GntR family
MSGVTYKTDQAYDQLERMIAFQELKPGTMVSESTLMELTGFGRTPIREAL
QRLAWERMVEIHPRRGAFIPHIFVEVQLKILEVRRGVEELAVRLAAQRAD
ALQKADMGRLAGEMDKVIGGNDLVTYGDLLRRINEAIVMAARNDYLLLAM
APLQGLSRRFWFANVGDQQGELAKAARLHCAVLEHICLGEAEAAAQASLA
LNDYLTDFAYRTIRRA
>Rru_A0456 Predicted transcriptional regulator
MTETLTPYDPAEDLVSDEAVAVFMTEAFKTEDAAYIAHALGVVARAKGMT
QIAKDTGLSREQLYRSFSENGNPTLKTTLAVMKSLGIELTVKPQA
>Rru_A2694 DNA-directed RNA polymerase
MNELMKIFGQVSGTQAFDQIKISIASPEKIRSWSFGEIKKPETINYRTFK
PERDGLFCARIFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLSKVRRE
RMGHIELAAPVAHIWFMKSLPSRVGLLIDMTLKDLERVLYFENYVVVEPG
LTPLKLHEMLSEEQYQRAVEEYGEDSFTAGIGAEAIRDMLMSIDLETLKT
DMKVELRDTTSEAKRKKLVKRLKIVDAFIESGCRPEWMILEVIPVIPPEL
RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRML
QESVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDY
SGRSVIVVGPELKLHQCGLPKKMALELFKPFVYSKLEQYHYATTIKAAKR
MVEKERPEVWDILEEVIREHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQL
HPLVCTAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNILSPANGKPI
IVPTQDIVLGLYYLTLDREGEKGEGMAFASLNEIEHALQARVVSLQARVK
ARLHTIDENGAPVIRTVETTPGRMLLSRLLPRHTALPFSVINRLLRKKDI
TDVIDTVYRHCGQKETVIFCDRVMQLGYAHAARAGISFGKDDLVIPPTKA
QLVADTDAEVKEFEQQYQDGLITQGEKYNKVVDAWSHCTERVADEMMKEI
AKIEPGKPVNSVYMMAHSGARGSAAQMKQLAGMRGLMAKPSGEIIETPIV
SNFKEGLTVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDAIIV
IEDCGTSRGITAMPVVEGGQIIASLGERVLGRTAAEDIKDTDGTIIVPLG
KMIEEHDVELLEEAGIEQVRIRSVLTCEAETGICGKCYGRDLARGTKVNI
GEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSSVEAAFDGKIVME
NRAVVGTSENVLIVMSRNCEVKITDEAGREKARYRIPYGSKLLTDEGRMV
TKGDRLAEWDPYTVPIITEREGIAIYNDLVEGVSVREVTDEATGISSKVV
VEWKNMPKGTDLKPRITLRDDRGEGITLANGLEARYFMSVDTILSVENGQ
RVKAGDVLGRIPREGSKTRDITGGLPRVAELFEARKPKDHAIISEIDGRV
EFGKDYKSKRRLLVVPEDGDPVEYLLPKGKHLTIQEGDYVRKGDPLMDGN
PVPHDILRVMGVEALANYLIKEIQDVYRLQGVKINDKHIEVISRQMLQKV
EITEPGDTTFLVGELIDRTDFQIENEKTLKENGRPANSIPVLQGITKASL
QTHSFISAASFQETTRVLTEAAVSGKSDSLMGLKENVIVGRLIPAGTGAM
MNRLRALAATRDKEIEDSRGAEMVPVLGAAESFTPRLPEPPAE
>Rru_A2695 DNA-directed RNA polymerase, beta subunit
MTKSLTSRKRIRKDFGRIPTVAPMPNLIEVQKSSYDQFLQIGVPVDKRTD
SGLQEVFKSVFPIRDFSGKGELEFVAYELEEPKYDTDECQQRGMTFAAPL
KVTLRLLVWDVDEETGARSIRDIKEQDVYMGDMPLMTSNGTFIINGTERV
IVSQMHRSPGVFFDHDKGKTHSSGKFLFAARVIPYRGSWLDFEFDAKDMV
YVRIDRRRKLPVTTLLYALEGAAATALREARTAEGRSVDPSEIAGMTSEE
ILDFFYQKLSYKRDDKGWKVDFKPDHLRGVKLMFDLVDAATGEVKIEAGT
KVTPRAARKLAEDGMTEMRVFTEELVGRYAAEDMINEASGEIYAEAGEEL
TEAMLADMEKAGFTELRVLHIDHVNVGPYVRNTLAMDKNTTREEALIDIY
RVMRPGEPPTLETADALFKGLFFDSERYDLSAVGRVKMNARLGFTMQEAP
DTMRVLRKEDVLHIIRQLVELKDGKGEIDDIDHLGNRRVRSVGELMENQY
RVGLLRMERAIRERMSSVDIDTVMPHDLINAKPAAAAVREFFGSSQLSQF
MDQTNPLSEITHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETP
EGPNIGLINSLATFARVNQYGFIESPYRKVVEGTVTDEVTYMSAMEEGKY
VIAQANAALTEDGHFADDLISCRKASDFEMVQPQDIDYIDVSPKQLVSVA
AALIPFLENDDANRALMGSNMQRQAVPLVKAEAPYVGTGMEAAVARDSGA
TIAAKRAGVVQQVDATRIVIRATEDLKIAESGVDIYRLQKFQRSNQSTCI
NQRPLVKVGDLVGRGEILADGPLTEMGELALGRNVLVAFMPWNGYNFEDS
ILISERIVSDDVFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALKNL
DEAGIVYIGAEVQAGDILVGKVTPKGESPMTPEEKLLRAIFGEKASDVRD
TSLRIPPGVTGTVVEVRVFNRRGVEKDERALAIERQEIESLAKDRDDERA
ILEGSFARRLKELLIGQKVVGGPRGMATGGVISEDLLSGYTAAQWRQIAV
ENDETATEIEGLKKAYEESIAKIQERFENKVEKLQRGDELPPGVLKMVKV
FVAVKRKLQPGDKMAGRHGNKGVISKINPIEDMPYLEDGTYVDIVLNPLG
VPSRMNVGQILETHLGWACRGLGAQIGALLEQVKRGLIPINDLREKLDDV
YGPRHAKEDLAPMGDDQIKELAFNLRSGVPIATPVFDGARESDIVDMLRK
AGLDSSGQVTLSDGRTGEPFDRKVTVGYIYMLKLHHLVDDKIHARSIGPY
SLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVSGR
TKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLDVELGQSSF
>Rru_A3775 Transcriptional Regulator, XRE family
MSSLDHDDLDRFARDRSSSTTPGPGPVVVSSSFRPSLGGDGPGFPTGSGE
GAAIRRSSRGRTPSGKPNPVDVHVGARVRLRRTLLGLSQEKLGEAIGLTF
QQVQKYERGANRIGASRLWDLGRVLDVPMAYFFDEMDDSTQRHSPMNIAQ
HPGEPPVQGTDTMTRRETLELVRAYYRIGDPGVRRRVFELTKTLAGIGEG
AAAAEDVAVQ
>Rru_A3242 Transcriptional Regulator, XRE family
MNGRETMPESDTRTIHHVDAHVGQRVRQRRTALILDQETLARRIGVSFQQ
IQKYERGRNRISASRLYDIAKALAVPIDYFFSDLERGDPRHDGALAEDMG
RLAQGGSAPPDPLRLTQSLDLAQAFWALPDDGMRQSFIALLKAMSSFED
>Rru_A2913 Two component Transcriptional regulator, Winged helix family
MRILVIEDDKEVAAHLLKGLREAGHVADSVADGRDGLFQAAGEAYDLLIV
DRMLPNVDGLTIVRTLRASGKTVPVLILSALGEVDDRVKGLRAGGDDYLV
KPFAFAELLARIDALTRRTAGSDAEQTRLRAGEVEMDLLARRVTRGSRTI
DLQPREFRLLEYLMRHADQVVTRTMLLENVWDYHFDPQTNVVDVHISRLR
RKMDEGFAQPFLETVRGAGYVLRTNGS
>Rru_A2140 Transcriptional Regulator, XRE family
MIEIGKRIAEARKDQGMSQYALAKLLGVNQSTIAYYERGRNTPKPWIVED
LARILNVSAAFLLYGRERTDPLVPVVGRVGLGGQVTLAPAEPIGFTELPP
GASSRTEALIVEGDALWPVYRAGDIVFFSEEDVHRSPEDLHGRDCVVRLA
DGTTLIKLIKRGRTKALFTLASYNAPDIEDIALEKAAPIRWVKRAY
>Rru_A2929 Two component Transcriptional regulator, Winged helix family
MDMMDEPGLGAAETTPPDRDALILVVEDEPDIADILRAYLERAGMRVVSA
RDGRRALDLHASLNPDLLLLDVQMPVMDGWRVLSELRHRGDTPVIMLTAL
DQDIDKLMGLRIGADDYVVKPFNPAEVVARVRAVLRRMGGDGGERARRVL
RFGTLRIDLDGHEAMVEDDGGRCLAIDLTLTEFRLLVHLARTPKRVFSRM
ELLGACLPEGEALERTVDSHLSKLRKKLEAFGVMGVPTNVRGVGYRFGGG
>Rru_A0932 Sigma54 Specific Transcriptional Regulator containing GAF, and Fis DNA-binding domains
MNIASTQPGTALRRARHLLEGGSLPPAGLIAPTVAHSWERSLRAGLLPFS
PPAVADHLAARHLAQAVERRRELLMRARPVMDYLHAQTKGSDSVVILADD
NGVLIEALGDAAFVERAERVALKPGASWHERHRGTNAIGTALVEAQPVAV
HGGEHFFEHNRFLTCAAAPIAGPDGRVLGVLDISGPQRGRHPHTFGLVRA
ATHMIENKLFEARHEGEYRIRFHPQADGIGTLAEGMVALSEEGLVIGANR
AALAFLAITPSDIGKALIEALLPLRMADILDHGHRHPGTTLGLACPGGGR
FSLRVEPGWRAVVRPAAMPAPDRVQDALADLDTGDPTMAGAIERVRKILG
KPIPLLLQGESGVGKEVFATALHATGPRRGRPFVAVNCAALPEHLIEAEL
FGYAPGAFTGARREGSAGRIREAEGGTLFLDEIGDMPLALQCRLLRVLQD
RQVVPLGGGKAVSVDFALIAASHRPLKAEAEAGRFRADLYYRLNGLTLCL
PPLRARRDFAALVARMIETMEPGAGIGLDPDVADALAGHGWPGNLRQLAN
VLRFACALRDPGEIRLGWHHLPEDLIEELRCPSGVDTDAGAGPATLRAAS
DSLIERMVAASGGNLSEAARRLGISRNTLYRRMNGWAKPPAPLPMGPARP
CMK
>Rru_A0163 Transcriptional Regulator, XRE family
MITAAQMRAARALLGIDQRTLADLSGVSLPTIQRMEASDGTVRGVVDTLT
KVVRAFDLAGVELIGEDAPSIGIGRGVRLRQHTRG
>Rru_A3638 Two component Transcriptional regulator, Winged helix family
MERPRPCEGPGGRAARASLCTKNTSAMVSRTLRKERRVQQTMTSGKRLLL
VVEDDSFRRALGEQLRAQEDFGPVDEVTSLAQALERAATAVFDLLLVDLG
AGEGAGGGETVCRALREAGIEAPLVLLAGPGAPPPPTDLGPVERVDKPVR
LGALLALLRARMKAKEGGGEESFIVGPYRFQPADKMLVGPGEGRSLRLTE
KETGILAFLCRAGGKAVDRETLLHEVWGYGAGITTHTLETHIYRLRRKME
ADPVKARVLLTEDGGYRLGS
>Rru_A1726 Transcription-repair coupling factor
MKNLLESLAVGRRIEAAGLPEGFDALVLGELAARPGVPAVLHVARDDVRL
ARLAETIAFFHPAVEILEFPAWDCVPYDRVSPNVEIVARRLETLSRLSEE
PTRQPGGRLVLTTASAILQRVPPRQILERGVFSARVGGRLDLGKLLDHLA
RHGYGRSEQVMEPGEYAVRGGIVDIFPPGAPEPLRLDLFGDELDSLRSFD
PVSQRTTGQRDALILRPMSEVVLDKESISRFRSGYRELFGTPSAADALYE
AISAGLPFMGMEHWLPLFHEGMDTLFAYVPDGPVTLDPGLDGALRSRQDQ
IFEYFEARRLMESVGDGAKASEKPGGGMIYHALPPPRMFLEEDEFLRHCA
GRPGAAFSAYAAPDVATEKGVVGDFLGRPGHEFADIRARAGGNVFDALRD
HAQALRAAGKRVVLTAATMGARERMTGVLREHGLSPIVTAETWAEALERA
KKATVVLTLILDRGFETPDLAVISEADVLGDRLSRPVRKKKLGDKFIPDI
SALSEGDLVVHVDHGIGQYEGLETLTAGGAPHDCLRVVYADNNRLYVPVE
NIEVLSRYGSEQAGVQLDKLGGVAWQARKAKLKQRIRDMAEQLIGVAAAR
QLKVGEVISPPEGLYDEFAARFPYAETDDQLRAIADTLDDLAAGRPMDRL
ICGDVGFGKTEVALRAAFATAMSGRQVAVVVPTTLLARQHHLTFKERFAG
LPVRIGQLSRLVTARDTKAVKEEMAAGTLDIVVGTHALLAKTVRFRDLGL
LIVDEEQHFGVAHKERLKQMRADVHVLTLTATPIPRTLQLALTGVREMSI
IATPPVDRLAVRTFVLPFDPVVVREAILRERFRGGQCFYVCPRLTDIDKV
MERLTTLVPDIRAVVAHGQMAPSRLEEVMTAFADGQYDVLVATNIVESGL
DIPRANTIIIHRADMFGLAQLYQLRGRVGRARARGYAYLTLPPGRTVSKT
AAKRLDVMQTLDTLGAGFTLASHDLDIRGAGNLLGDEQSGHIKEVGIELY
QQLLEEAVAAAREGPGVEEASGAWSPQIQLGTPILIPDSYVKDLGLRLGL
YRRIAGVTDEAEIDEMAAEMVDRFGPLPDEVENLLKVVTIKVLCRRANAE
KVDAGPKGAVLSFRDNLFPNPGGLVRFIGQNVATVKLRPDHKLVYRRDWE
VARERIQGLGKLMRTLADIADEERPGR
>Rru_A3598 Transcriptional Regulator, XRE family
MRRSKTEETLGDGINKSPDPVDVHVGRRLRLRRTLLGMSQEQLANAVGVT
FQQIQKYERGSNRVSASRLYDISKVLGVPVAFFFEDIGDEVTSARLAPIV
PDITGSGLSEPAIPAYEQDPLQKNETLELIRAYWRLPTDTVRKRALDLLK
SLSGRD
>Rru_A0691 Predicted signal transduction protein
MMQTILFVDDDINLLQALQRMLRGYRAEWEMVFVDDPRKALALLATRRFD
VVVSDMRMPDLDGAQLLSEVERLHPGTVRVILSGYAEESSLFRSVGPAHQ
YLSKPCDPEAILALMARSWRLREILADPALRDLAASLRTLPSPPDLYLRL
TAAMADPAVNTSTIARMIAEDMAMTAELLKITNSSYFALPSRITTAAQAV
RLLGLETVCVLVLHAGIFRQFQGHPGLGEILRALSGHGVAKGLLAQKLAA
EDGADEAVRAQAHCAGMMADIGALVLLDAYPDAFQTMIAKAGRGKLEAVE
RAAFGASHAQLGAFILGLWGFPDPVIEAVLYQWHPSQCLNQGRGALSYVH
LACVRGNASPLGPPGMGECDLDADYAARLGLDHSPCVR
>Rru_A2401 RuBisCO transcriptional regulator cbbR, LysR family
MRHATLRQMQIFDAVARHLSFSNAARELGLTQPAVSLQIKQIEALAGLPL
FEQMGRVLLLTQAGTILLGHVRTILAAVTDADKAMDALKGKRAGALRIGV
VSTAKYFAPRLLSVFTAGYPGVELGLTVANREQILGMIQENALDLFIMGR
PPTEPAVRAERFAPNPMVMVAASDHPLVRRKLTFHDLSGETFLMREPGSG
TRILMEKLMTDHGVLPHRMIEMSSNETIKQAVMAGMGISLLSRNTMSLEL
SVGRLVILDVEGLPIQRDWYVVIREGKHLLPVAEAMVAFLKARGEDLLSD
AIRTLPPRRNRHVSG
>Rru_A3368 Transcriptional Regulator, LysR family
MPRDLPPLNALRAFTAAAKRLSFTQAAEDLGVTQAAVSHQIRGLEDWLGV
ALFRRRNKQVVMTEAGQVYALAIGQALDEIAEATAALVRNDPRAGMLTIS
TMPSFAIKWLVQRLGGFINANPDIEVRLHTTRELVNFATEGIDVAIRMTR
EVGDDLHADLLLEEELFPVCSPALMRGIRPLRQPSDLSQHLLLQDVGISW
VSWLDPAGALDVRPARGPGYLDSALAIQACIESQGVMLGRTVMVEDDLKA
GRLVEPFTLRVPSPMKYWLVCPPGHLARPGVRAFREWILAEASKWTKARS
SAHGVED
>Rru_A1852 Ribonuclease III
MARDLNALQIALDHRFTDPALLARALTHRSREGRPSYERLEFLGDRVLGL
VVAEMLYARFPTEDEGALARRHASLVRQDTVARVAQSVGLGELMELSRGE
EELGGQFNPSLLCDVCEAVLGALHLDGGYAKAQRFVEARWAPLMAEDLTP
PKDAKTALQEWAQGRGLPLPTYAVEGRDGPPHKPMFTVSVTVKDNGSESA
LGASKRLAEQAAAQRLLDRLA
>Rru_A2042 Transcriptional Regulator, XRE family with Cupin sensor domain
MDFDVGARLRAIREAKALSQRELARRAGVTNGTISLIEQNQSSPSVASLR
KVLQGIPMTLAEFFSQETPPPDQIVFRPDELAELTNEIQRRNEGAISFRQ
VGDTSRHGLQILHETYAPGADTGRTMLAHASEEGGIVISGQIELTVDTTR
YVLGPGDSYLFDSKRPHRFRNPFDAPCVIVSACTPPYL
>Rru_A0353 Phage Transcriptional Regulator, AlpA
MEIKTLINRKKLHAMIPLAERTIYNMEQRGEFPRRIALTSRSVAWDLAEI
EEWIEARRSSGAQAARPGA
>Rru_A1994 Transcriptional Regulator, MerR family
MTKSRDSFSIADLAAEFSVTPRAIRFYEDKGLITPARDGMRRIYSPRDRV
RLMLILRGKRLGFSLKEIQEIIDLYDAEPTGEAQLRRLITTCQTSRAALR
QQMEDIRITIDEIEAVEAQCRQALLEGPRSRKAVG
>Rru_A2718 DEAD/DEAH box helicase
MTFADLGLSPETLRAIEEVGYTTPTPIQVQAIPYVQMGRDVLGIAQTGTG
KTASFTLPMIDILASGKAKARMPRSLILAPTRELATQVSENFTLYGKYQK
LSMALLIGGESMNEQQKVLDRGVDVLIATPGRLIDLFERGSILLRDVKVL
VIDEADRMLDMGFIPDVERIVALLPKIRQTLFFSATMDKEIRRLADAFLM
NPKEVRIEPTQKVAETVEQALIMVKASEKREALRQLLRRETVTNAFIFCN
RKRDVDVLYKSLSGHGFDILALHGDMPQYVRTERLEKFKRAEVQLMVCSD
VAARGIDVTEVSHVFNFDVPTHPEDYIHRIGRTGRAGRLGRAYTLATPED
AKYLRAIENLLGKTIPPDPQLELSDVAVEDVALAVAEDDRRPKRGGKGRP
ERGARRSGRGSADAERPRPLAPERAANDQAPVERPAVEKTLAEQPVAERP
PVERGQAERTAERPSSDRTNERASSDRSSERASSERNGDDRGRGGRGRDD
RSAARGRRPRRWEDDPQSEVMEMRIGDDVIGFGGFTPAFLLVPSVPFSDP
DELDREALAEEALADAGLLVEAEEPENDSDFVPAPGLAAREIETAPKAPV
AAEKPEREKAEREKPKRKRGGRRTKGATDGADTAPTAETLAATTEGTDAL
AATSEGTDALAATTEGTDAVAEPLSDDAAPMVAEAPGAEPVVEAPTVAEA
APEKPKRKRAAPRKKAEAAETVTNEAAASPEAEAPAEKPKRKRAAPRKKA
EAVGAEGDETVAVVAEKPKRKRAAPRKKAEAAQADAEAEVAAPTEPRED
>Rru_A0785 Transcriptional Regulator, LysR family
MMPRDDTLPTIRRRLPPLTALRTFEAVARHLSVTNAADELSVTPAAVSQQ
IRQLEDTLGTALLRRHGRSLALTDAGRALQPGLSEAFDRLVQAITEMRPA
ADARPVVRVAVTPSFAEKWLVPRLGLFIRANEGIDVHVMAGMELMDFARE
PVDLAVRFGAGRYPGLTVELLREEEVFPVCAPALLSGAQPIRKVVDLRHH
VLIHDDNPAERDVCPDWTMWLTAAGFADLPAANGPRFNQSSMVLEAAAQG
LGVALAKGFLARADLESGRLARPFAENHALRFAYWVVSTPQALVRPEVRL
FRDWLLGEAAE
>Rru_A0758 Transcriptional Regulator, AraC family
MTAAAAGPEEVAVYVVLPPRVLLLDVAGPIEVLRKANLEQDRLRFVVHYV
GPAATVSSSIGLEVAGVAPLPDTLPEGALVVIAGSAAVTLGAVPANQADD
AAKDAAIVDWLAQRVRPGIGLISICSGALLAARAGLLDGVACTTHHACCA
ELARLAPKARVVENRLYVEDGERLSSAGVTAGIDLMLHLVARRIGPACAL
AVARYLVLYLRRGPGDPQLSPWLEGRNHLHRAIHRAQDAVAADPARPWSL
GDLAEVAAISPRSLSRLFNDQVGMSVTDYVNRLRIALAHDILTATRLDME
AVAERAGFSSTRQFRRAWSRLHALPPSRTRPVGKVEQG
>Rru_A2224 Transcriptional Regulator, MarR family
MSEVKSGVNPLFLREEELRQGIELLFFAYRDFTSEADAMLAKHNFGRAHH
RVIYFVGREPKIGVSALLGILGITKQSLSRVLSQLVEEGLIVQHRGPRDG
RQRLLELTEKGIDMERRLTEAQRRRFARAYREAGAEAVEGFRKVMLGMID
GPARERFAAAAKRETPPSPPRVSRAGARR
>Rru_A0145 Transcriptional Regulator, TetR family
MSSPAPPRGPGRPREFDLDVALDGAIVAFCERGFHANSITQLSEAMGVGT
GSLYKAFPDKRGLFLAAVERYAALRGAQLDAVLDTVEGGRERLRAALTFY
AATPHDGDDRQGCLLVNAATESATFDTALANRIRDCLSLTESRLAGLIAE
GQSDGSIDQTIDGPATARLMLCLIHGLRVVGQAGMPPIGVAALVDAAMRT
LR
>Rru_A3628 ParB-like partition protein
MNGDTAAPGRRRGLGRGLSALLGDDPNDTVVQESAAAAAAAVASGRAIQV
LPVGALVPNPDQPRRHFDEEAIADLTESIRAKGILSPILARPDPNQPGTF
QIIAGERRWRAAQRAQLHEVPVLVRSFSDQETLEVALIENLQRQDLSPLE
EAEGYRRLLEDFAHTQEDLAKVVGKSRSHVANTMRLLQLPDDVREMVEKG
ALSAGHARALLTTEAISDLARLVVSRGLNVRQTEKLVQQAAAAANKPRRP
ATAAPTDKDADTLALERDISNVLGLAVEISAKARGGRLTIDYDSLSQLDD
ILHRLTRGHQGPLQRLAGEEPPLANG
>Rru_A2028 Transcriptional Regulator, BadM/Rrf2 family
MRLSTKGRYAVMAMADLAAHSGGKPVALADIADRQEISLSYLEQLFGRLR
KGGLVKSVRGPGGGYLLSREAGDMRISDIILAVDEPIQTTRCSPGSPAGC
HNNKGRCMTHDLWEELANQIYLYLSSVSLEDVTQRRVLGTSGLIGEMPPI
VAVQ
>Rru_A2537 Sigma-24 (FecI)
MSERPEGKASLPRPEDSADEELMALVRDNDREAFRTLVTRHIDRVVGVAR
RVVGPTEAEDIAQDVFLKLWTNRDQWQPGAGSFRTWLYRVVTNRCIDHTR
KRTAIPIDDAPEIPDDARGPLENCHASETADRVRQALRFLSEPQRMAITL
YYNEDLTAAEVATVMDLSLNAVESLLKRGRHKLRELLAENPGP
>Rru_A1581 GCN5-related N-acetyltransferase
MNNPSLSIRAYDGAADLSRLSTIWFEASLQAHAFIGEKRLREQRRLIEEI
YLPKAETWVACSGGSAVGFISLLDTFIGGLFVAPDQQGRGIGKALVAHAL
ARTGELRLEVYTANQQAFSFYTSLGFKELSRRAEDDEGMPFENAALRLTL
>Rru_A0942 GreA/GreB family elongation factor
MSTSSSQSVVPPPVVIDHADHERLQGLALRALAGAPDLAGRLLAEIDRAR
VLPSESVPADVVTLGAEVTFRDESTGRVRKVTLVYPGEADIDQGKISIMT
PIGVALIGLAVGASIDWLTRDGDERHLSVLAVRKPE
>Rru_A3418 Transcriptional Regulator, TetR family
MPNNEADHPRRPRRSQEARSAETRGKLIAATLDVLLAEGYHALTTQRICD
VAGVSRGAMLHHFPSKVSLVVTAIDHLLTTATEEIRDQAKRVHGGEISLE
AFLDYLWREQFSGRLFYLTLEHVTLARTHDEIRAPLIPVVKRFHAALDET
WTEVFPTTSLAPGGIATVLNLTLCLMRGMGLQTVLRPNDDAYYQSLLSAW
KALLPGVVEGRFPLSPSALSPLSPVPSPTPRSAR
>Rru_A0021 Transcriptional Regulator, MarR family
MPVPPILACSPSRSDPGAVADEDLALRLDRQICFPLYAASNLMTRLYRPL
LESLGLTYPQYLVMMVLWEVSRCRVGDLGARLHLDSGTLTPLLKRMEAAG
LVNRRRDSADERRVEVSLTEHGQALRLKARSVPEGVITALDLPRERALAL
GEELRALVDVLATALDHRTTPSPPGDKR
>Rru_A3642 Negative regulator of class I heat shock protein
MVVTGRGGIVTELDERSRQIFGQIVETYVETGEPVGSRTLSRRLTVALSP
ATIRNVMADLEDLGLLYAPHTSAGRLPTDAGLRLFVNGLMELGGLTSEER
RHIDGRVQAAGKNLDDMLSDATSLLSGLARCAGLVLAPKTDSALKHIEFV
PLGPGRAMVIMITENGLVENRVLEVPQGLPPSALAEATNYLNARLTGRTL
EEARSEIQEELDSHRSALDDLAQRVVETGMATWSGGTRGGELIVRGQSHL
LADVTALEDLERIRDLFDTLETKEQVLRILDMVNLAEGVQIFIGAENELF
SVSGCSMIVAPYQNSREEIVGAIGVIGPTRINYRRIIPLVDYTSKVISRM
IG
>Rru_A2863 Transcriptional Regulator, TetR family
METKDRILEAAAIEFAERGFHGATIALIIHRAGVNQAAVNYHFGGKAKLY
AAVIRRAMGRLLDLRGDPLTSWRQTADPLEALVRGMLSENLIASEERDRI
HRLFVWEGLRASGVAEVAPVVMMDRHFRSVAAVLAGEIGCGESDDEAMTD
AIWVIGQCHAFGRDRALRSHLPAVPPEAEAAYCDALVSRLLPRIRAGLAL
TRADRAAGRKVPGAAA
>Rru_A1669 Transcriptional Regulator, MerR family
MIPPSPTLEPADDGDGARRGKSESAFRTISEVSADLGVPQHVLRFWETKF
SQIRPMKRGGGRRYYRPEDVILLAAIRDLLYNDGYTIKGAQKLLRENGVK
SVISQTLGIGAETTAAIGAEDDEADRPDASEPEEALAGHDAPFDDAAEGE
GDEDRSPYPDPLEADGDLLDGDDEDDSLGELDDPADEGGEEAPSVPPLAQ
AAEPVAPVVVVAGLSPSQRRELLAVLAELEDLRRILQQAEL
>Rru_A3203 ribonuclease R
MPSLAPLWHDGADPGNGIRARRVFPQDSLWLSRPNRRFPDPKDSPLTPKA
PKHVPFPSREQVLEFIRAANGEVDRREIARAFHITGPERADLRTLLKELE
SEGALQRGRGRRIAPPGSLPEVAVLIVARADAEGDLFCKPEHWPEDEEPP
RILLWPEPHHARRPGVGAEIGVGDRILARLTRIGDARYDARTIRRLAAAP
SRLLGVLALARDGLRLRPTNRRDRDEYLVAPEDAGGAEPGELVEAELLPS
RRLGLRRAKVIERLGGREGPRSISLVVVHSHDIPVDFPPEALAEAEAAVG
VDLRGREDLRAVPLVTIDGEDARDFDDAVFAEPDDDPANPGGWRALVAIA
DVAHYVRIGAALDKAARERGNSVYFPDRVVPMLPEALSNGWCSLRPNEDR
GCLAVWMIFDAEGNKLRHRFLRGLMRSAARLTYTQVQAARDGHADDLTAP
LQERVIAPLYGVFQALLGARSRRGTLELDLPERKVVLDDGGEVARIEPRL
RFDSHKLIEELMIAANVSAAETLEEKRRPCMYRVHDQPAPDKLVALGEFL
ESLDIPFHKGSINRSGQFNGVLKAARGTPHEHMVNEVVLRSQAQAEYSPD
NIGHFGLALRRYAHFTSPIRRYADLLVHRALIAGLGLGDDGLRPGAEEDF
VETAAHITATERRAAQAERDAVNRYTVSFLAAKVGATFAGRINGVTRAGL
FVTLEDTGADGLIPIGSLPNDYYVHDDAHHCLRGQRDGLEFHLGAPVEVL
LREANPVSGGLVFGLLQGGVAGAAKGRGFSGKTKGRDGLGKTRLKERGAA
AKLKKGARGKPKAAGRDALAGEPVGSGPKKRPPTTTSRRKTR
>Rru_A2712 Transcriptional Regulator, TetR family
MARGNTRALILEAALDCFLAKGFAGTSVADIRARSGASTGSIYHFFDTKD
GVALALCAEGLRSWAGAVSAVPAQGAAEGVIRAMVDAAIDWALGNDRLHR
FLLQSDSLVPVAAQRSDMVDALMEARLAQERILRDLTAKGSIRPMAWDMA
RAMILGPAESYLRERAHGRAAALPEEAKALLGEAAWQAVRADPQAKPKRE
RQWNLI
>Rru_A1973 Transcriptional Regulator, LacI family
MDDNDAKPMTVSIKDVARHAGVSPSTVSRALGRGPISEPLRQQVEAAVRE
TGYRPNLSARRLRSRESGTVGLILADIGNPFFTALTRAVEDAAYQAGLRV
ILCNTGEDAEREAMYLRLMQEERVSGVIFAPTLAYLDHPPQSPLDFPVVL
VDRAGPQGLYDSVVLDNEAACATLVDHFHARGYRRINGLFGKTSATGVER
RRGYDDTMRAYGLEPKACAIAPHAEAAEVAVSRWLSEPEPPEAIVASNSL
LLIGALRAVRRAWLRLPDDIALAGFDNELWTELVEPGMTVIEQPIEAIGR
AAMSLLRDRMADPTLPPRQIVLKGRAIIRGSSAPALDERSF
>Rru_A0337 Predicted transcriptional regulator
MTRTDKKVRYSPEGKGSGYTRETAAEGVETVLKLLEGRWKLIILFHLFGG
AVLRFSDLERAIPAVSQKMLIQQLRQMERDGIVRRIVHHQVPPKVEYCLT
DWGQALCPALDALLSWAALREDRAKSSP
>Rru_A3537 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
MPTRTVVLTERHEKLIAELVGSGRYQNASEVLRDGLRLIEERAAREAAKL
KALREAAQIGLSDLDEGRFRDVADGDLDAVIGDLGRQAVARVRHRRNI
>Rru_A3645 Silent information regulator protein Sir2
MTGLLPCPIVILTGAGVSKESGLDTFRDRDGVWARVRLEDVATPEGFARD
PALVQAFYNDRRRGLLDPSCLPNPAHEALARLEREWPDEVLIVTQNIDDL
HERAGSRQLIHMHGELTKARCLDCGAVLDWRADLGESDGCPACATVGTLR
PHIVWFGEIPLEMERIQDALSTCGLFLSIGTSGNVYPAAGFVRQARFEGA
AHTVELNLEPSLGATLFEESLYGPASEVVPAYVERLLGAVAGR
>Rru_A2311 Transcriptional Regulator, IclR family
MSNSPPDGEGSSDGKRSATIQSVSIAARFLTILANAEEPLALGTLARRAG
TGGSTAHRYVQSLVKEGLAKQDSVSGFYDLGPLALSVGIAALKRTDAVEI
AARHMKALANRIAASAGVAIWTERGPTLVRWYRSAYFSISSLALGDILPL
DNTACGLVFQAFLTPNHIDVARRLQPDYFRGTPPSSETLARIRQTRGAEL
TGHLLPEITGQAVPVFDAQQELVCVMTTVTNLGRTGDRADREALFETARA
VARETGGDASFA
>Rru_A1347 Transcriptional Regulator, GntR family
MTSEPQAPPTAPLTDAALADEGAAKAAERIYGAIVDKILAGTIKPGDSLN
ELALAEAFGVSRTPVREALQHLSIAGLAERGARRAFMVRRLDLAELGDLF
ETMGEIEALCAQYSARRMTAMERRSLESTVAEGADMVKRGDQAAYTRLNG
RFHQALFDGAHNDSLRDIARLVRVRTAPYREAQFRQTDRLASSQGEHEKI
LAAILSENAQEALSAMRTHVAATAMNVTRMLSKR
>Rru_A1968 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
MENKVVSIHEARPKLSDSEKITINLGPVDLGQIDLLVREGFYSNRTDLIR
TAIRNQIDRHADVVRRTVERGDVDLGLRHFSRADLEAIQAEGRMIHIRVL
GLASIARDVTPDLARATIASLTVLGALQASPEVKAALADRSA
>Rru_A2308 Transcriptional Regulator, ArsR family
MVAENSTLSVDAMRTAAAEATATLFALANQNRLLLLCQLCNGEMSVSALE
EALGIHQPTLSQQLGVLRSEGLIASRREGKRIYYSVANPKVLVLINTLVD
LYCPQKRDLP
>Rru_A3463 Transcriptional Regulator, AsnC family
MSLFPPPQTIQKGSPMQKIFVMIKCDLGQAYDVASTIIETVEEVSEVDSI
SGQYDLMAKFYIAKGADIGHFVTEKVQTIGGIKDTFTIVAFNAFG
>Rru_A2782 Transcriptional Regulator, LysR family
MFTLRQLRYIVAVADTLNFRRAAEVCLVSQPTLSVQIAEVEAFLGLTLFE
RTRRSVVLTPIGREIAERARGVLREANEIVDLARSLRAPLSGPLRLGVIA
TLGPYLLPYVLSAFREKHPSLRLYLREDPSLRLERRLRAGELDLILVDMP
IDDAGLDIMDLFFEPLWLAAPPDHALADRTRVSVEDLAGRDLLLLEEGHC
LRDEVLDLCRRVGAREHGGFQATSLDTLRQMVASRIGLALLPDLYVAAEA
AQDPNIRMIPFSAPPVRRVGLAWRKTSARVAEFREFGAFILARLPASLAV
P
>Rru_A0183 Cold-shock DNA-binding domain protein
MPGEFLNTYHFVPVRDGGPTLGPTHDLENVRVALANDRAGAKEWDIWSHD
RWHDGHLSGRITCTLTTEDPLVIGAEQKRGENGETCTIVAPYLLDGKPAI
PPTTLKGMLSALIEAATNSAMRVLDDRALSVRQDMNKALSAIGMVMRKPG
VAQTESEGWDLIPLTLPTIKLKPGAGYPESPPPSFPIPHSFLTLMKTLRW
KPAQKVFVGTLTWPKAPPGTNRQEPPTPDEDFKFMMRAGTYSSAAPATYL
MDITPLPLTPDGKAITYKPLVTRVKQLQTPGKPEFLIGQKSRNSKLSRPI
LESDVPEEQRQTMTRGILRVMHHDDRVNDLPHTRKHEVFIPLPQDLECAP
RLPIPSAVVRLFHALADERTQTQSGGRDQSEWGALPFHPVGTRRAESPAP
FGNALRLKEGDLVFFDLKTGTDKQLEVAAISFSSIWRQSKESVYDYVPKD
AQPLTSNRSSLSPTELMFGVVEVRPEDTAGTDGSNTIALKGRVRCGPARC
ERGQDAFMTPDPSVRLKILASPKPPSPALYFRPKGVKDGFIAKTDLASAN
HEIRGRKMYLHPTAQALGVKAVEQSKSRTPENDPSNNQRNMVRPVKPGVT
FTFSIDFDDLPTECLDLLLFACRPTKDFRHRLGMGKALGLGRVRVDVTEV
SVIDRGRRYRVDDPFTTKRAHRLWSDGVGDADLDPAQAARRVVDKMDDVI
LAHLLGIGEPRHIGDRPVHPPYTDDQQAAFLKRLSGAEEKTYAWFVEVYT
RGPANQKFLQDIRLTRSPPGTDDPVATIEMLSLPTTGATLPRKGSRADRP
PPPSPKPAGPAKPAGPEIRGTVKHYDPIKGRGYIIPDGKGSDILIEKAVL
KACGMGRLKKNDRVVVITKDQGGKPVAIDVRR
>Rru_A3468 Transcriptional Regulator, AsnC family
MTLDDLDRRLIGLLREDARLPVSSLAHALGVSRGTVQNRIDRLRDSGEVL
GFTLRLRSEAGSGVRAVCLVSEQTRDASAILAALKRIPEARGVHTTNGRW
DIMVDLAADTLEDLDRAIGQIRALGGVTDTETLVLLTPHKG
>Rru_A1060 Transcriptional Regulator, LysR family
MERAGLADLDAFAAVARLGSFRKAAKERGVSPSALSHCVRRLEDRLGVRL
LNRTTRSLAPTEAGERLLDRLGPALSSIEGALSEIDGFRDRPFGRLRLSV
PRSAAAFALAPLVARFTRLYPEVDLEVEADDGLVDVVAAGFDAGVRIGEN
IALDMISLPLGPPLRLVIVGAPSLLAGAPPLTDPADLRRFPTIAFRFPEG
VYRWELEKAGRRVTVDPTGPLCVNDHTLLLEAASAGAGLACVLRPRAADW
LADGRLRPVLEDWCPAFPGLRLYYPSRRMTAALRAFIETLRLGATHSPPN
TGAPWDGGDEE
>Rru_A1857 RNA polymerase, omega subunit
MARVTVEDCVLKIPNRFELVLVAGQRARDISAGSALTVDRDNDKNPVVSL
REIADGTVDIPNLKEAVIQGLQKHVEIDEPEEDDFDAMGLDRDLMPGVAL
AEDDDTLEADGLTIHDGADSDLDLSDDAGQDTDEADED
>Rru_A2887 GreA/GreB family elongation factor
MEKIPMTPDGLARLEAELKSLKSVDRPAVIRAISEARDHGDLSENAEYHA
ARERQSFIEGRIKELEDVTSRAEVIDISKLSGDTVRFGATVSVLDEDSEE
QTTYQIVGAHEADLKAGRISVASPIGKALIGKKVGDSIEVKAPGGSKFYE
VTMVRFG
>Rru_A0962 GCN5-related N-acetyltransferase
MTSLLQPYSFGSETFITPWTDPVLPSPLLSLVADGVTEGYEWVGDFPTCW
RERPFLDAGEGLFVAWAKEQDGGIPLGMACLSADPHVADPDTGRLRYIYI
HPNGRNRRLAERLLQACLARARPRWRRLRLHTVNPLAARLYERYGFRPIT
GEARATHALDLGRR
>Rru_A1652 Transcriptional Regulator, LysR family
MDLAALAVFRTVAREQSVTRAAELLGRVPSNVTTRVQQLEAEIGVALFQR
DKKRMVLTAAGETYLDYAERILNLAEEAQQRVKPLAPFGTLRVGSMECAV
ASRLPAPLARYSAAWPQVRIELTTAPTRPLIEAVLARRIDCALIALPSGE
GWLGPTPLDTVPVFREDLVLLLPHGHPEVHTAEDIKPRTLATFAPGCTYR
GLAEDWLTDQGRRQMAFAIQEVRSYHAMFACTAAGSCVSVMPRGLVELMD
HREAVEEKPLRTVDTYLASRPGFATSAFAAFRETLGEFSDFKEEGDGAG
>Rru_A1441 Transcriptional Regulator, MarR family
MSLNRLHSAGYMTNWAARLFALAIEQRLKPHGIAPAYLPVFFALGPGKPL
SQKALAALAAVEQPTMAATLNRMERDGLIERTPDPADRRSSLISLSELAS
GKLEVVRQATADINARALSSLTEAECATFLTMLEKIIERLDPRGRGQ
>Rru_A3619 transcription termination factor Rho
MHLQELKSKSPADLLAFAEELEIENASNLRKQDMMFAILKQLAENDTAIF
GEGVLEILQDGFGFLRAPESNYLPGPDDIYVSPSQVRRFGLRTGDTVEGQ
IRAPKDGERYFALLKVNKINFEAPESVRHRINFDNLTPLYPDERLKLEID
DPTRKEFTTRIIDLITPLGKGQRALIVAPPRTGKTVMLQNVAHAISANNP
EVYLIVLLIDERPEEVTDMARSVNGEVVSSTFDEPASRHVQVAEMVIEKA
KRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRKLA
DRRVFPSIDIARSGTRKEELLVRKDVLSKMWVLRRILSPMGVQDAMEFLL
GKMKETKNNDDFFDAMNS
>Rru_A1961 Transcriptional Regulator, TetR family
MTDHRKPLITQRKQPRQARSNDLVAAILEAAAQVLTRDGAHRFTTARVAE
KAGVSVGSLYQYFPNKAAILFRLQSDEWRQTSEMLHTTLGNAEKPPPERL
RTLVHAFIRSECEEAATRLALSDAAPLYRDAPEARQTREAAQRMVQTFLR
EALPEAAESTRALAGDLITMTLASVGKQFSSAPRTPAEISAYADALADMF
CAYLGLLNGRDKG
>Rru_A0879 Transcriptional Regulator, AraC family
MSVQESVGGDVTGWWPSDNESLSPYPLYRERFCREGGLQPVFSGRTVLLP
LRPGLLLSMREGQALTDLRGKREVGPAMHLEILFAAEGYSVVSGSTERYP
FKPNTVSLQVTSSAVVAEFFIPAGAVIRSLAVRFSGLYLDHLASKGGFAA
LCSGGGDPLLLSRGVDLVMRPLSPALRPLASQILATEGATDGERLFLEAK
ILELISVVLSTPASGGGQSQTEPTKTALSRRDHKKIGQARELLIGDLDKT
WKIKDLARHVGMNENKLKAGFRQIYDNSIYAYLQDWRMRAASHRLKQGED
SVTGVALSVGYSNPAHFAKVFRRYFGVSPSRYAEDGAPGPKKDNETY
>Rru_A1143 regulatory protein GntR
MFKHSQLDSVKAWIAHPAHAVMPLHARIQRAIRQLIVDGALGAGKPLPAS
RALATSLGVSRDTIEAAYSQLHAEGFIDRRVGSGSFVAEMTEFMPSRPLS
QRDALLRNQAPTLSTRGAAMFRSGGVREMLAPRPFAHGVPETRTFPLQLW
ERLERQVRKEVGAQTLFHGDPQGTEALRRAIADYVNLERGARATADRVLV
LTSSQQAMSLCATMLLDPGDRIFLEDPAYYGARKAFDAAGLDCVPIPVDR
QGIVVDQIMAEPHGAKAVFLTPSHQFPTGATLALDRRLALIEWAARTQAW
IIEDDYDSEFHYAGKPTACVQGLDKHDRTLYIGTFTKSLFPGLRIGYVVL
PPPLVKPMTVARTLLDGHTAPMAQLTLARFMEGGHFGAYVRTMRGVYAER
LALLAGLVSKHLADFVEPRVPIGGLQLPCLLTRDLSERTAIDAARRVGIE
LLGLSALHAAGDGKAGFLMGFAAYTPLEIEEAVRKLEKALRAVTRP
>Rru_A1898 SOS-response transcriptional repressor, LexA
MLTRKQYLLLSFIDQRLKLSGVSPSFDEMKDALGLKSKSGIHRLIKGLEE
RGFLKRLPHRARALEVLRLPCNLTFDGDGEALDDGQPAPLFGGPLPETGF
SPQVIRGNFTPTLPSTQVPQVLFTESISLPLLGKIAAGTPIAALIDPTSS
IDVPASMVRGGEHFALRIEGDSMIEAGILSGDLAVVRRCDEAENGTVIVA
LVDNEEATLKRLRRKGASIALEPANRAFKTQIYGPDRVRIQGRLVGLIRS
Y
>Rru_A1339 Transcriptional Regulator, DeoR family
MALDPPAAQGATTPKPTTPRKRWPGPSQEAVTEMTTDSRDAERHLLTEIA
ALYFLEQVTQEELAKRFAMSRAKIGRLLKRAREEGIVEITVRPHPSAVSE
MEEEFRQRFGLSRLLISTDHRDPDTQRSAVASLVAAYLNRVLDDGMIVAV
GMGRNVGAVADNITSPAPRAVTFVSAIGGSMRAGGYMNPDHICRRLAARF
GGESETLYAPALVANPELKAALIGQDTVKHTLDRARRADLALIGVGDVSE
DSNMVRMGWFSPSEVAEARLSGTIGDMMGYDFIDIEGRPSNTAMQGRIIG
LTMAELCRIPDVIAIASETTKAAGILGALRTGTINTLATSTSNAHTVRSL
DDATRGHRSRPLD
>Rru_A1935 Transcriptional Regulator, LuxR family
MRREFEAAGVPHVSYGALFSPHYRSDPGRETVYMSHFDQAFLDRYSQAGH
LSHDTAVQWVFRFSQPVPWVTPRRLAELSERQIRVWEEGEAFGVRNGLSV
PVRFGRDGSAGGLFFSATGLGDDDWRGILTDKGATLVALAYTFHEAMERF
PLFSTRVNPQDHVIHLTNRERESLIWSARGCQVGEVADRLGVADRTAEHH
LGAARRKLMARTTAQAVARALAMGLLFDGVAPLRRAPGDLPFPDPGADLQ
SVSI
>Rru_A0883 Sigma-24 (FecI)
MSQPNDEALSLYLSHRGALVTYASGILGDRAQAEDVVQEAWLRFAGRAPG
GEGVRQPLAYLYRVVRNTAVDCLRRLSAEERRNEAGEILSDPDRQAPSPE
EIALGRDHLRLVAAALSELPERNRRAFELQRFEGLSFQQIAQHLEVSPAT
AHRLARDAMVHVMGRLQGAQG
>Rru_A2941 putative DNA-binding protein
MGDDLIEAMAEAVAYMDGKTKGLVTHEVLVPDDVDVAAIRKGLGLTRSAF
CRRFGLDIRAVQEWEQKRRRPDRAARALMLVIKHNPQAVEAALHDAA
>Rru_A2215 Transcriptional Regulator, LysR family
MVRRLPPLNALRAFEAAARHGGFTGAARELHVTPAAVSHQVKGLEDALGV
SLFHRLAKGLELTAAGRAYLPELTAGFDQLARASERLKRGALVGRLTVSV
LPSFAAGWLAPRLASFLRRYPDILLDLRSTPRTVDFIRERVDLGIRYGGG
IYPGLASYRILEEEVFPICAPALLNGPVPLRGFADLRHHVLLHDPGILPG
EPWTGWEPWLAEAGVTDIDLEAGHGFTESIAMIHACVAGLGVGIGRSGLV
TELLRSGRLVRPFPVSRPADFSYWVVVPPPSQTNPKAAAFIGWLLETAGR
GGAGAGAQPDLLGEDPS
>Rru_A2232 Two Component Transcriptional Regulator, LuxR family
MRVMIVDDHELFRNGLRFQLAAIDSTLDVVEADTFEDCIRLATEDGPVSK
VFLDLMMPDMDWREALSALRRLPDPPDVVVLSGADDVAMIRSAIDHGACG
YIPKSLKGDVLESALRLILAGGFYITPEVYRGPRVYDGAVRIMGVGGDDV
PLTPRQKEVLAHIDAGLSNRQIAQAMTLSEATVKMHIGRLFKALGAQSRT
DALAVARRKGML
>Rru_A0079 Transcriptional Regulator, CarD family
MSNQLQYETGDFVVYPTHGVGQVLDIEKQVIGGYDLELLVIGFERERMKL
RIPMPKVRESGLRRLSTKKVMESALVTLRGKARVKRTMWSRRAQEYEAKI
NSGDPVSIAEVVRDLHRNATQPEQSYSERQIYELALERLTCELAAIEDID
ASTATQKVEKLLSAA
>Rru_A2304 Transcriptional Regulator, DeoR family
MRTMSYRRVERLAMLATALEAGGSLRLKEAAKMLGVSEMTVRRDIATGDG
SLTYLGGYIVAGQETPGGMGYLFATELASHTEKKRDACTLAASLIEPGDT
VFLDCGTTMPHLASRIPTDLRLTVVCYAINVAEILCKKPNLKVVLLGGIY
HPSSATFSSEEALGTLANIGINKAFISAGGLHADRGVSCSNFHEVPIKRA
AMQNAVRRIVVLDSTKFGRVKPAFIGQIDDFDTVVSDAAVPAPWRETLPP
GVRLLMPAP
>Rru_A2397 Sigma-24 (FecI)
MTDVKDSLDLFLRHRRALIDYATPIVGDSMRAEDVVQEAWLRFDSASPSP
TSTEAGRGTALERPVGYLYKIVRNLAVDLSRRLKREAWMGDGGASLDGVA
AGAPSPEQEAIGRDDLRAVAQALASLPPRTRTAFDLHRFENCTFAEIGQR
LGISQTRAHSLVHEALAHCLDHLDRSSKL
>Rru_A2614 Transcriptional Regulator, XRE family with Cupin sensor domain
MTDETGRLVRERDEDAPSSPQAAVLALPDRDAAPFFREAGRPSATIPSFE
PPTAADLGRSAEDLMPVVGENLRRLRTGRGLSLDRLAKLSGVSRAMLGQI
ELGRSAPTITVLWKIARALDVPFSAFVAAPALSKAVVLRRSEASWLTSTD
GRFSSRALFPFDAPRRVEFYEVVLSGHSIAQSHPHPAGTVETLTVARGVL
EVDSGPRIHRLDPGDALQFEADIDHAYRNPGGDDTVFYLVMTYVETVG
>Rru_A0993 Transcriptional Regulator, NifA, Fis Family
MPDTAVAGPLFRLPPSPAEDSSLPLLTLYEVSKILGSTLDLEHSLHDVLN
VLASYMQMRRGVVTLKDAQRQLEVVAVSGMTLRNAVEGEARYPLAVAQEV
VSTAMPMIVPSMAADPRFAAFAAEADGLDDEVQSMICVPIKGGVKPFGSL
SIERHRDRGTRFKFEHDVRFLTMVATLIAQTVSLERRVVGDRDRLIEEKA
RLEKALPKREKPLKGTILENVVGRSSAMMKISAQVRQIAPSRATVLLRGE
SGTGKELIAQAIHYLSPRSDKPFIKVNCAALPETLLESELFGHEKGAFTG
ATTERKGRFEMASGGTLFLDEIGEITVHFQAKLLRVLQEGEFERVGGGKT
IKVDVRLVAATNKDLEDAVTRGEFRADLYYRINVVPIFLPALRERREDVP
LLAQFFLTKFNEENGRSLRFSEGALTAMGGCNFPGNVRELENCVCRAATL
AQDEVIQELGLSCHNDKCLSASLWQRRGSGRAIGGLAPVTEQNDPDTTSV
AWEGDLRPAAPARAGTPPGRGYAGPGESADSPSSPSAPPPAAAPAAEDGE
DESDAGQRERIVHAMEKAGWVQAKAARLLGMTPRQIGYALKKHDIPLKRM
>Rru_A1366 Transcriptional Regulator, DeoR family
MAADDADGLSSDSDTQHLNTRVAWYYYIGSMTQQEIADRLGLTRLRVNKI
IGQARADGSVQIEINMPLASCVALEESLKSRYGLVDVVVVPSVKDEEVQK
RVIGEAAGLMLGGLLRDGQIIGVGWGGTLVASVKRLTQRRHPRSRVVSLM
GGLTRGSAANTFEVATDLARVLGAECHYIPSPLYYPNDESFASLLGHRPL
AEVMAEARRADVALVACGDLSGRSQLFSAVSLESRQIADLKALGTVGEVL
GTFLDAEGVPVDHPLNSRVMALHPADLKAVKATILASGDTYKLPVIRAIL
RGGYINRLVTDEAVAEALLRGA
>Rru_A3701 Transcriptional Regulator, TetR family
MGRSTTREKIVDAAMEIVRTQGAARLTLDEAARVAGVSKGGVLYHFKCKD
DLIRAMVSRLIEQNESLCQRYYHLEPEGPYRWARTIVRAAFDPQGAGNDP
AGAAILAATALNPNLLEPIRGQFFMWNERLRSDSPDPDRALLIGMAMDGL
FLDRVTGMLQYDAAQLNRLQASSLALLT
>Rru_A1925 regulatory protein GntR
MTLDLLPEGMPLQAALIALLRRRIFSGALGAGARLPSTRALAAELGVSRN
TVLAAYDSLRAEGYLIARPGSGHRVAGDLPEPADLGAGLGGAPAGVGTAV
ALSQWGRRVTPEDPQPAVAASPRYDFLYGTSNTTLFPHKDWRRAILGVLD
LRRREPGQLFYQDAMGSPALRRAVADWLRLHRGIDTGTRGVVITNGSQQG
IDLATRLLVDPGAVVAVEEPGYQGFREILSALGARLLPIPVDDQGLRVDH
LEAVSRDAAVAGVCVTPSHQFPTGAVLSPARRMALLAWAKAEGAWVIEDD
YDSEFRYGARPLAALAAGDDDGRVIHLASFSKALFPALRLGMASVPAGLL
GPFGAARRLSDRHGPALEQDALARWMEDGTFARHLRRVRTRQAERRAVLV
DALTRHFVGMVRIGGASAGLHLVAWFPGLDAAAMAAWADRAAVLGIGVHP
ITRHYQGPAAAAFVLGYAGISVDDIPAGIGLLKACAPL
>Rru_A0804 Transcriptional Regulator, LysR family
MGIRVSTISRCIGHLEDEIGVALFLRRPNGVTLTFAGEQFLVRARRAMTE
VRHAICEAGIAGTGRNGFVRLGLLSSLAAPFPAMLIKIYCAAYPGVRILY
SEGGAADHRAALQHHRLDLAFLPHPEKAEGCDALGLWEERLFAAMAQDDP
LTRHDVVTWDDLRERHFIFSEVPPGPELLDYLTERLVGFGFLLKADLLTV
YRDTVMRVIANGSDVTVIGEARVSHPIQGVACRPITGESLFFHAVWLPTN
DNPAFRRFLSLAKVLSKQCSVCELKEGLAGPSGEDHSVMDETSASLERKS
RLLKIVSERCATCLLKKAIAD
>Rru_A0663 Cold-shock DNA-binding domain protein
MLTGTITWFDTINGYGFIRPDDGGGDIAVDMPALDRSGLRSLRDGQRVAY
RLTRPRFGGAMAGMIRMA
>Rru_A3173 Transcriptional Regulator, TetR family
MDPGRPGKGSMEPREPLRPGGRSARIQDSVHRAVRALLGEADRGDVTIPL
IAQRAGVTPSTIYRRWGDLAALLADVAAARLRPDGPPADTGDLRGDLEAW
AEQLAEELASDAGRAIVRDLLAGGGEGTVCGRCAAYTRAQIEVMLTRASA
RGEAGPSADRVLDRVVAPIYYRLIFTLPPISGEQAVALIAACFDADSDAD
AALGGERREGRPR
>Rru_A0139 Transcriptional Regulator, MarR family
MPVVLNPVEALDLWRGSILESVRRDAPDLSARQMALLLTVYLTPQPHTVR
GLAGLLNVSKPAITRAVDRLSDYGLVKRKTDEADRRSVLIQRTVKGSVFL
REFGDIIVSAGRNTKSE
>Rru_A0382 Transcriptional Regulator, MerR family
MKVLDIGEVSAQTGFPASALRYYEEVGLISSIARHGLRRQFAPEVLVQLK
LIALGKTAGFSLDEISAMFGKTGAPDLPRAMLHEKADALDRQIRDLTALR
DTLRHVAECRAPSHMECPTFRRLVELAGKHGKLRARKGVGKKSVLKEKKS
GVDA
>Rru_A1282 Two component Transcriptional regulator, Winged helix family
MANHHILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDL
ILLDIRLPGVDGLQLLREIRHQSEVGVIMVTGKDDEVDRIVALEMGADDY
VTKPFNVRELLARAKNLLRRTLSAREASEDENQKSFAGWTLDIPRRCLFA
PDGSDVRLTRGEFELLCCFASRPGRVMTRDNLLDYVSHRDWAPSDRTVDV
LVGRLRRKIEADPKAPRHIITVHGIGYVFADSRHIEPGSPEKSAARQGG
>Rru_A2063 Transcriptional Regulator, GntR family
MTTTLNRQTMSSGLTALLRDAILNGQIAEGTQLRQDALARQYEVSRIPVR
EALRQLEAEGLIIGHAHRSSVVASLSLSEITEIFEIRSILEPHLLRRSLI
HLSTADFDRAESVLDAYDAALDAGDMARWGELNWVFHQMLLEPAERPQTM
AIVDGLRRRVDRYTRLQINLTDGARKSRLEHRAILAKARAGAVEDCAAMV
RDHILGAAGDLTGFLRDNYGKA
>Rru_A2214 Transcriptional Regulator, LysR family
MSRRLPPLNALRAFEAAARHGGFTRAAEELGVTPAAVSHQVKGLEDVLGL
CLFRRLPRGLELTEEGQAYLPDLSRGFDRLARAGERLREGGLAGRLTVSV
LPSFCANWLAPRLPDFQAACPEVHLRMLSENRFADFNRDGIDMAIRYGRG
IYPGLRAIPFLAEEVFPVCAPSLLNGALPLRGLADLRHHTLLRSIDETAG
EPWLYWRLWLAAEGIEGVAPDGGIGFTDGSALVQACLAGVGVALGRTALV
EDHLRTGRLVRPFAGLSRPADFSYFAVAPAANLENPRVACFIDWLRAAGV
PACLADGG
>Rru_A1311 Transcriptional Regulator, MerR family
MDTLYSVTDLGRSLGITPRTIRFYEDKGLISPRRVGTTRVYTAKDRARMT
LILRGKSLGFTLRDIKEFLDLYATDKTQVEQITLLLAKVRQRVAQLEEQR
QAVETSLRELRDIERQSLEALKAKGVNPHPQG
>Rru_A1021 Sigma 32 (RpoH)
MSTYRYKLPAVSDEGGLSRYLTEIKRFPMLTPEEEFMLAKRLQDEGDRDA
AHRLVTSHLRLVAKIAMGYRHYGLPVSDLVAEGNMGLMKAVKKFEADRGF
RLATYAMWWIKASINEYILNSWSLVKVGTVAAQKKLFFNLRRLKAKLGVY
EEGDLSPEDVKTIATQLKVTEADVVMMNRRLAGPDASLNVPVGEDQSMDR
MDLLMDEGDNQEEVYAAHEEQSLGNRLLKDALSTLTERERHIITARRLRS
EPVTLEELGGEYGVSRERVRQIENRAFEKLQTAVRKAARALNDRQPHHGG
VEPAMA
>Rru_A1265 Transcriptional Regulator, DeoR family
MDKGSEELQGQDGGQGRRPGAARRAAVQEVLQESGYATVADLARRLEVSE
MTIRRDLSVMEEDGAVVRTHGGALSVSVEREGAFDREEPAFEQRRRQRAD
VKQRIAQAAARLAYPRGIIGLDSGTSSLALAEELAQESDLRVFTNNIRAS
TALVESRNLVYLLGGQVRHPEMSVIGPMTVNQIRGYYFDQFFVGLSGCGP
AGIFDYSLEDTEVKQAFIERSGTVIALCDSSKFGRHALAQICPLDRIDIL
VTDAPPPPPLAQALVLAEVRVILADPAEGPDLPPN
>Rru_A0304 Transcriptional Regulator, XRE family
MASSKILIGMRQAVAYARGEAVGVRETTVKTPASVDVKAIREGLGLSQSE
FARQFGFSTSSIRNWEQGHRYPEGPARVLLKVIEIDPEVVRKALSA
>Rru_A1171 Transcriptional Regulator, BadM/Rrf2 family
MLSNKAKYGLKALLYLAEHGDGTPILIAEIAESEDISKKFLDAILLELRN
AGLVGSKKGRGGGYFLAKPTDQIFIGTVIRVLDGPIAPIPCASRTAYRPC
DDCGSVQECAIRGLMLDVRDAMAAILDSTTLAALHARGKAAQTLMYYI
>Rru_A1107 hypothetical protein
MAQEPEVAATASGGGEPPVLRDRYEIDPAKPLPGLDMPNAHAFRVTDKRN
GQRALYALVCDGPLPPRTSAMRTLRGVSAPGLVPLVEWGVVDWPPIDGRC
VAVVYERPLGGRLMKSEDEVFQPVPDQSFAKIIWRPLIAGLTELQGRSIA
HRAIRPTNLYWMDREQTRIALGDCTTSPPAYDQPVGCETIESGMASREGR
GGGYYPDDMYALGATLVIASVGNDPLAGVAPEAIVSAKIANGSYSTVVGD
ERVPLGVIELVRGLLVDDQEQRWSLETIELWTNGRRMNPMQTRQEKRAQR
PFVFRGAEYYTRRALAHALSQDWETGVQPIMEGKVETWLRRGLELGDLAD
SVGNVVRAANVTAKDVGPVRDMAVAAVLTLMDPRAPIRYGKVRVHMEAFG
TAMACTLAMRGDIRPYIDLIQRDITKTWIAAQEAFSSDFGRFDAEFKDLR
TYLVQTSKGGGIERCLYEMNESLPCRSALLRNQCVLEIGDLLPALEWVAA
KADQKQSPADRHVVAFVAARYPKDTMGQIHALNDEDPRKAALGVLSLLAV
LQWKLGPESLPGLAAWLGSQMAPAINSYHSRERRKRIEKELPKVVRKGSL
PDLYFLLDDSKERQLDLDGFLAARQQYAQAAQQVAALESGNYRVSETSER
LGQQTAASVSVAIAIVTIVFVSISRLI
>Rru_A1462 Transcriptional Regulator, AraC family
MKSGISITEEIAVITHDENRYSGPTHSHEEAQLLYAVSGVVSIKTDKGTW
VVPPSRAVWLPPKLEHETTSRAGVQFRSLLIDPNGIQGLPDACMVVEITS
LLRELILKLAELAKTPGSRERTDAVVRLFLMELSFQPAQPLNLPTPTHPD
LARLCAKMREDLAEGVSVEDAAAMLYMSRATFMRFFKRETGMSFGHWRQQ
ARMLDALVLLADGRSILDVALECGYSSPSAFSAIFRRSLGRPPSAYF
>Rru_A0131 Response regulator receiver (CheY) and unknown domain protein
MSDDELLFAEEDPSDNVGEGIGRAPWVILVVDDDTEVHALSRLLLSEIEF
KGRRVAMYSAYSAAEARAMLGRIDDVAVILLDVVMETDDAGLKLVRTIRE
TMNNRDVRIILRTGQPGQAPEREVIETYDINDYKSKTELTAQKLHTALVA
ALRAYDDIMALVLSRQGLRKILDAAASLYRQRSMELFAAGVLTQINALLG
GDRDGILCVQSRKEQADEDDPAGAMVVLAASGAYERLVGKRVDELPESPV
ISLIREAAASRTSRHGSHASALYMPTGDGRETVVFLHAAEPLKAQDRALM
QLFCDNISAGFDTVCEIDDLRRENVRLRARLGEAKAP
>Rru_A1247 Transcriptional Regulator, XRE family
MAAHPRTYSRATREALVLMGGKIRLARKQRKMSEADLAARIGIARSTLQL
IEKGSPKAEIGLVFEAAHLVGIPLFVAEPSTLAAQIARIEDQLALLPHSI
RRPRTEVKDDF
>Rru_A2025 Transcriptional activator, TenA family
MKRYPGEAVPGLIPQDSLFARLRGACATEWQAYTGHAFVRQMGEGSLREE
CFRHYLGQDYLFLIQFARAYALAAYKAEALADLRTAGLGMAAILDEMRLH
VSLCQRWGLGPADLEALPEARATIAYTRYVLDKGLAGDLLDLHVALSPCV
VGYAEIALTLRQSLSEDHPYAEWIGEYAGEAYQGVARSAVATLDRLLVER
GGIGRMPALIATFRQATRLEADFWQMGLTLSA
>Rru_A1024 phage repressor
MTEKLTGKTPTGAPAMAGQAVGDQRGADDRAGRFSERLATALQGRSANWL
AGRIGGSASTVRDWLSATSEPGLGKLVATAACLGVPLDWLATGRVAEGAT
APPSDLFGERGGGAVTRAPLSVRPAEDETAPHRGLALYDTVAAAARMGGG
HPGAAGLDLPESYLRDHLRLDPQRAIAVAVHGDSMEPALSDGDLALIDTA
TRALERDDLYAFLLEGEGYIKRLQKAGAAVIVHSDNPAYSDWTIPREIMA
SMHLLGRVAGVLHRL
>Rru_A0461 Transcriptional Regulator, LysR family
MDRLTSMGVFIKAADLGSFAAAAEALAMSPQMVAKHVVFLEDRLGTALLN
RTTRRQSLTDVGRAYYDRCKLVLSEAEAAEALAHDMRSRPQGVLRVNAPM
TFGAFTLAPFVTRYLTRYPEMRVDLTLNDRFVDPLEDGVEVMVRIGEIAD
TALIAHPLAPYRLIACAAPSYLAARGTPKEPADLQGHDCLVYAYWSPSIP
CPWVFTREGQSHEVRANGRFRSTDWKALLHAATAGFGITLGPESVLADEV
AAGRLVRVLPDYQGPARPMHVLYPAGRRPTVKLRSFVDAVVEEFGPR
>Rru_A3004 Aminotransferase, class I and II
MDWKGAYAHRAGAMRASEIRELLKLLDQPDVLSFAGGIPDPTLFPTEAAR
EAYGAVLGEPGVGPLSLQYSISEGYVPLRRWIVAHMASRGVVCDEENIVI
TSGSQQGLDYLGKLLISPGDSAYVTRPTYLGALQAFNPYEPRYADLAFGE
GAPTPAQCREAALAAGGRPALAYVVPDFANPTGETLSREDRLRLLEHVSA
LGVPLVEDAAYAALRYAGADIASCLALDIARVGDIDHSRVIYCGSFSKTI
APGLRVGWICAARDLVQKVVLTKQAADLHSATINQMVMHRLAEAIYDEQV
KKIIGVYAARRDALLAALAKFMPEGVSWTAPEGGMFVWVTLPANIDGAEL
LAESLRDERVAFVPGGAFFFDGSGANTLRLNFSLPSEAVINEGIARLARL
IARKNNQFRAA
>Rru_A2338 Transcriptional Regulator, AraC family
MERIRPSSGHPTGEATTRMLGLCEDEREAVGTLSGLRSRCFDLRPGLAVT
LYGGNGRDEIRATLRNTSENIHFCCLLRGASEAVIRNHLAAPAVGEGYVV
FAPGEDFSARYGPTYRHIDLMVAPDVLADLVGDDFDQIRPEVENGFIMRA
LHAGHRTVGAAAELASQLEEEHSERLFLYAAALKFLGAHFCGTRGGALKP
TLSPRERQRLLAARDRLLLDLSAPPTIAELAREIGLNQLKLKQGFKTLFG
TSIYALFQRHRMERACALLRTHSVTETALTLGYSNLSHFSTAYRKQFGDL
PRNERKKYVA
>Rru_A2875 Transcriptional Regulator, LysR family
MAEADLHDLDAFVAVARARSFRGAATLRGVSASALSTALRRLEGQLGVRL
LNRTTRSVTPTEAGQRLLDRLGPAFGEIAGALDAVASLGDQPSGTLRLNV
PSIVARHVLPAIAARFLIAHPAITLEVTTNDSFIDVLAAGFDAGIRYDER
IERDMIAVPLGPRIQRFIAAGAPSYLARRGVPATPRALVDHACIRHRFAS
GVILPWEFSHQGQVLRIAPNGPLVSTSIDISIAAAIAGLGLIYTFEEYLR
APLARGELVAVLADWGQSFSGPFVYFPSRRQMPAPLRAFIDFLKDDARTP
PSPRA
>Rru_A3065 Transcriptional Regulator, XRE family
MSPLADSIRRGLEESLIYAKGETDGSGYAVHIPAPIDVRAIRAKLGMTQE
QFAGRFGFSVNTLRHWEQGKRQPEGPSRAYLLVIDRAPDAVQNALGAV
>Rru_A0553 Response Regulator Receiver Signal Transduction Histidine Kinase
MNDPIGDPDLLLVEDDLPGEDRVSSPASDLGWKVLIVDDDLEVHLITRTV
LANVTFKNRPLLLLSAHSAEEARTVLANETDIAAILLDVVMESDDAGLRL
VRHIREDLGNRAIRIILRTGQPGQAPEREVIVAYDINDYKAKTELTSQKL
FTTIVAALRAYCDIIELENGRKQLERANSILEQRVADRTAALARSNAELE
SFAYGISHDLQEPLRMVRGYLQLIRRRLGPGLDSETRDYMAFAEDGATRM
GTMINDLLDYSRITTQPAHFEPIDLRHPLTLALGNLTLAIAESGAALTLP
DEPALISGDEGQLARLFQNLIGNALKYRHPDRRPAIGVAIEALAFDQRPG
WKITVTDNGRGIAPKDFDTVFNLFRRLDSGGPGGVAGSGVGLALCRRIVE
RHGGRIWVDSVIDEGSSFRVHLPAGLENSAPPPEAGDPPV
>Rru_A3458 GCN5-related N-acetyltransferase
MTAGVIVRQPLAGDREAFLALWRGYCAFYQAEVPERATQTLWRRVLDPAD
TGLRGLIACVGDAPLGFATLVTHPGTWSDRPVGYLEDLFVDGATRGQGLG
RALIAGCAELGREEGWLRLYWQTGRDNVAAQALYDRVATRTDWVRYELQL
NPR
>Rru_A2016 conserved hypothetical protein
MRLSERDVVASVGQLSLTHLRLWVSEGWVAPAQGEAGPAFDEIDLARVRL
IWQLRSEMDLNEEAIPVVLSLIDQIHGLRQELRTLAGAVDDLPADSRAHL
RRALGKRRQGEG
>Rru_A1774 Predicted transcriptional regulator
MKPDIDTTLPFAEDGADFALIRLIEALLFAAPTPLSVADLASRLPAGADV
AALLGALADHYRQRGVVLVESGGRWAFRTAADLAGQLRLETTEPRRLSRA
AIETLAIIAYHQPVTRADIEEIRGVALSKGTLDLLLEAGWIHPCGRRQTA
GRPLTWGTTEGFLDHFGLGSVDDLPGVEDLKAAGLLDRRPALAAYGTHAR
DGDDILADVEDEGTLTGQPGRRETDQLDLLRPPPRRPRG
>Rru_A2234 Response regulator receiver domain protein (CheY)
MPNGKTVLIVDDDTNVRKAIRLGVEELGWAVVEACDGEEGLRLLGERMFD
LVVSDVWMPKVDGISFLKHAMEIRPGLKVLSVSGGGTAPAALSLKMTEMY
GASDILFKPFTPNELLGKLSALMADEPALD
>Rru_A1570 Putative transcriptional acitvator, Baf
MLLAIDSGNTNTVFAVYDGDAKRGEWRAATNANRTADEMGVWLLQLMTLE
GLSQGDIDATIIASVVPATVFNLRMLCHRYFHSPPMVVGEPDVDLGIGIL
LERPDEVGADRLVNAVAAHETYRGPLIVIDFGTATTFDVVDEEGNYCGGA
IAPGVNLSLEALHMASAQLPRVAIGRPRTVIGKATIPAMKSGIYLGYVGL
IEGLVKRISEEFGAPMRVIATGGLAPLFAEATDAIQTIDDDLTLRGLLII
HRRNQPD
>Rru_A2790 Transcriptional Regulator, MarR family
MTAMPMPPPSADRSPAEPLPADTLPADTLDDLERALAFLGRIQEASQRKR
GYPLERALYLLLGRIVEGEGLTISHLAQALLLDESTVTRQVATLGQAGLV
EKRPNPADRRSLLVAATATGRDQHTAMRALRLERIGLLFAPWSESDREVF
RHLLGRYIDDATARINDPTI
>Rru_A0659 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with Response Regulator Receiver modulation
MTPNEDLIEIFEDEEISPSLTAKTWPILIVDDDQDVHDVSRLALRGVRLL
DYDLETLHAYSAAQARAILSSRSDIAVALLDVVMEREDAGLDLVRWIRSD
PARDLLRIVLRTGQPGYAPEATVIQDYDINDYRTKSELNRGRLISILTTA
LRSYRQMAVIAASRDGLDKIVRASADLLASPSMAIFAEGVLTQLAGLLGT
ERSGIVLARRNRRPGATASMAMTGDEGFVLAAAGPLSADIGRPLSDIGDH
QTAEILRRTLESRRSSFDHGSMALYIATPNGDSLAVLMEVAKTLGDTDRK
LVEVFCVNMAAGFDTISLFEQISLQAFHDEATGLPNLAACQSLIDQYLQR
RQPVAVTFFSLEGFSAISDTLGRVIGDRMIGLLANAFRHRLQERGEVFRV
GQETLATVIGGPVDQVGPLADQLAGDFRAGLPLDSMTLPVSFSHGTSVST
SEHDTAQILVQRAGIAMQKARNIKRGGGLTYAVAMEEEIRAHIGVISKLG
AGVVSEAFVAVFQPKIRLADRSCHGGEALVRWRDGDGTMIAPSLFIPAAE
TSGHIVDIGYSVFRQSCAMIRSLKVSQDDARIAVNLSVRQMREPDLIDKL
VSIAAEEGVATTRLKLEITESIVIDDLTHTVSLLKALKDKGFLLALDDFG
TGYSSLSYLRSLPIDTLKIDRSFVSGLAEQADMRKIVGLIIGLGHELGFD
ITAEGVETEEEARIVTEMGCFTAQGYLFSKPLSAEDFLVFARTHAGARQT
SGGSLSAEGCIRARDA
>Rru_A0895 putative transcriptional regulator
MAGRHSFAELRGRMTPEARAAAEAKAVGLEAEMDLAEVRRAMKLSQEEIG
QTLQINQGSVAKIEKRADMYVSTLRRFIEAMGGELEIIARFPDHSVKIRS
FSDLSEKGNP
>Rru_A2615 Transcriptional Regulator, ArsR family
MDIDLLALQGQTQKGSALLKAMSNEHRLLILCHLMHRERSVGELERVVGL
SQSALSQHLARLRKDGVVKTRRQAQTIYYSLNGPQAGAILRVLHSLYCED
ADTVPSRGRKQAGGQTDRL
>Rru_A0010 Sigma-54 (RpoN)
MVMSPRLDLRQTQSLVMTPQLQQAIKLLQLSNMELSVYVDQELERNPLLE
RDDSADVSPEPDRREERADSAETQVLDVVPGNTTDAPLDQDFNTAAEEGT
PSDSWAEAGGGFDAGTPWGSGTSGSFDDSDGGLEQMVAGPRSLRDHLSDQ
ITLDLKTSADRLIAHHLMGMLDDAGYLIGALDEVADSLGCSLAEVERVLG
RLQAMDPPGLFARSLKECLAIQLADLNRLDPAMQALLDHLEMLGRRDIAG
LLKICGVDHEDMMGMIAEIRALDPKPALRFENTLTQPVIPDVLMRPDPAG
GWLVELNSETLPRVLINNRYHARLSRSGDKETRTFLSENLATANWLVKSL
DQRANTILKVATELVRQQDAFFLHGVRHLRPLILRDIAEAIEMHESTVSR
VTSNKYIASPRGIFELKYFFTQAIGAADGGESHSAEAVRDRIRSLIEAES
PDQVLSDDKLVDILRTDGIDIARRTVAKYREGMRIASSVRRKKEKSGRLP
>Rru_A3601 Transcriptional Regulator, XRE family
MTPFGARLRALRAARGLTLKAMAEDLGLSAAYLSALEHGRRGRPAPGLVM
QICGLLGLIWDDAEDLKRLALVSHPKVTLDTGGLEPTATLLVHELAEVLE
TLDPGEIESLRALLRAARRSARPR