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# Salinibacter ruber DSM 13855, DSM 13855; M31

>SRU_2798 acetyltransferase, possible
MRRRRLSCRRERRQRSSWPRQKRAYAAVLARRSASSQRGLDGDAWLHDHG
AGPRQRRDPSACPSELSLPRSPTIMPDAPAIRRATLDDAETLVRFNEAMA
EETEDKTLDPKTVRAGVQAVFDTPEQAFYFVAERDGAIVGSLMITTEWSD
WRNADFWWIQSVYVRPSARRTGVYAALHREVRRRAREADGVCGLRLYVEQ
DNAAAQAAYETLGMNEPPYRMYEEML
>SRU_2571 transcriptional regulator, Sir2 family
MPDFSDTLVDRLVEAGHVAVLTGAGISAESGIPTFRDPGGLWEEFDPQEL
ANVEAFLDNPELVQGWYRHRREVVEDAAPNAGHHALADLEAHVPSMAVVT
QNVDDLHNRAETSTVIELHGNITDNYCMDCEQAVGAAAVDAAIQDGEPAR
CPDCGGLVRPDVVWFGEMLPPDAMEQADATTEQADVFLSVGTSAVVYPAA
RLPVAAREQGAYVAEVNPDTTGVTDDVHETIRGPAGDVLPALVDAVAARQ
RP
>SRU_0551 LexA repressor, putative
MPHEWRGGTANENGEAKTILGRFPTFPHAPHNVRGSGPMSRFSGAKSRLS
PPFPPGRAARTYRNTGRLRPVGGKIKIFSPLEENIFTSLLLPGWGGRTYV
CSPSRQRSRTPPRPPPQPASFSMSKEPLTQRQNQVYDFIEQYLDRHRKPP
TLQEIGDALDIASTNGVYKLLQKLEEKGWIEREKHKARSIQLAGREQDPL
GQGGGPPNLPIVSRTPSDHPERLRERPAGTLSVDHQLLRNARTPDDCLLG
RAGDDGMIETGIQKGDLLLIEEREWDDLDNRTLVAVLLQDQLLAREFEFA
NRKIHLRPTAPHYAEETFSPTESDYYVVGRVLGLIRTL
>SRU_2726 LytTr DNA-binding domain family
MPSTLMPDPLQILIVDDERLARRSIRSALNGVAGVAVAGEAASIDAAAEQ
IRTEAPDVVLLDVQMRGETGFDLLDRVEAPVQVVFITAHDEYAVRAFEVN
ALDYLLKPVDPDRLAEALRRTRQAETALPEDEDTDPEGLAYDDLFFYEDG
RRPRFIRVREIICIEAAGNYTELHVADGTTALTSTTLSTWTDRLPDAHFA
RIHRSTIVNVERVATVEQEDGRTYSVHVEGRDDPLSMSRRRARALRDRLA
>SRU_0004 RNA polymerase sigma-70 factor, putative
MSVPSSELRTVIDRLPFSVDDTDAANESFRRWRDEEDPKAKRHADLWTYC
YVCRYFLGKSARGTFDNPSDADELITRAYRKVQENRDGVRNAARYANWVS
VVCKNTLLNYTRRNQFSESIDGENRFTLTAETTNAVAEVGFVQEALVEAI
EGLPNYLQEPARLYFLENREFEEISEAVGKPVATVRTYKHKAMKELRTDE
RLREYVNQTDL
>SRU_2327 LytTr DNA-binding domain family
MASETPAIRALIVDDEPLARERLHELLTDAPAVTVAGTAEDGFEAVDAIH
EQAPDLVFLDVQMPGMNGIDVIEEIGTADMPVTVFVTAYDQYAIKAFDLA
AVDYLLKPFDDERFEEALRRAREQIANREGEAISDRLLRLLQERDPSLLE
KESARDEPYLERIAVQGRGKARIVPVDDLTHITADGSYAELHTGDDTYVI
RERMKTLAARLDPDTFVRVHRSAIVRLDEIELILRGGGGNYAVRLRDGTR
VSVSRSRVDELQDRLGVDVLQRDDANGA
>SRU_0495 conserved hypothetical protein
MPDSDEVDLGPGTLLISAPMMQDPNFRRSVVLLCEHNDREGTFGLILNRE
LDVSLGDVLDEYVTYDPPLYMGGPVQRETLHYLHTREDIPGGVALPGDMT
WGGDFEAVQQLAKGGDAAPDNLRFFLGYAGWGPGQLEGELGEEAWIPAPG
AAEFVFDTDPDQLWRAILRRMGGEYAVLANFPDDPRMN
>SRU_2471 hypothetical protein
MDCPHPSPMSSPDLSDTEADVLRAVQSEATADLYDLARAVGTGPRAVQDA
VRRLAQHDLVHASGRHVRCTNTGDQWVRAHS
>SRU_0138 transcriptional regulatory protein, putative
MSFTSDQPSMDELPLLQALLGGTRRQIVQLLRPEDRTVRELADHLGLTRN
AVRAQLSNLKSDGIVEVTGRRPTERKPEHVYGLTRKAEDLFPKPYDTLLN
TLLSVLQKTEWVNADPILEETGRRLGQMEKPDVLVSEASVRVGHARDVLE
KMGGLPQMHEEEQQYRLEGSSCPLSASVRAHGEVACDLARAMIEELTELP
VERRCDADGECPQCEFVVDAT
>SRU_0528 putative transcriptional regulator
MLLALDVGNSAVKAGLFSGDELVRVFSVDPPDADATDASYWRAELDSALA
DATVEHAGLVSVVPARTDAVARGLRGVVDAPLTIVAPEMALPFTLDYDTP
DTLGTDRLAAAAAGWTRYGRDASRSVIVVDAGTAVNYEVVHRTGTYRGGA
IGPGAVLMRNALQAGTAQLPDVPLHLPETPVGSSTRTALQSGILWGLIDS
VQGMAARLAAQLPDAPRLVLTGGWSNPLIDHLTIEAAHAPHLVLRGVRLL
AEKNRA
>SRU_0258 alginate biosynthesis regulatory protein
MPMRCLVVDDEPLARERLRALLDEADEDVEVVAEAEGGKEAVSLIHDREP
SVVFLDVQMPVLGGFDVVDLLPEPGQRPHIVFVTAYDEYAIQAFEARALD
YLTKPVRLERLNKTLGRVQDALANDDAREQENLDDLRDSRQDQALKRLTV
HVGHRLRVVPLEEVRWIEADEGFVFAHTEGGRYRTDFTLEELESRLPPTR
FVRVHRSTIVNLDAAYELVPEPAGTATLRLQDGTEVKVARRRTDDVRSAI
GG
>SRU_0244 conserved hypothetical protein
MPVLDLLQSETKRRLLRLMNRRGEITLNDALEKIDRARPTLRDHLDQMGR
DGLVTRRSKREGRGRPSMCYRMTSRAERLFPRREGAVFAEFLAYLEEQGR
DQLIEEFFQSFWNDRLDEVERRLSGSLESADTRQIVDVLKAVLEEAGFMP
EVRVEEDRVVVEECNCPFAEIIGATELPCASETCFYEALFGRVERTRHIP
DGDEACAYELPVLQQQ
>SRU_2773 probable transcriptional regulator, TetR family
MGLTDWYIKTMVGMQTSSGSPTESDTTANQILDVAEAHIQRRGYNAVSYG
DLADELDLTTTAIHYHFPAKADLGQALVRRYRRQSSQTRAALVDQHETLR
ERLVQYVELFSGILEDGGLCLCGILAADAETLPDKVQRETQRFFAEQEDW
LTTIIGADSSGGAGLQGCPSPRDTARVLLAAVEGAMLTTPHRDPETYTDT
LRRLIDSIVT
>SRU_1727 conserved domain protein
MAERETGTVKWFSNEKGYGFIVAEDRDEDLFVHYSEIDTEGFKSLDEDDR
VEFTVGHTDKGPNAQDVVVIG
>SRU_0350 hypothetical protein
MSESKAPSPVEKELIEKFGNIYESYGLRRLQGLIVGLLLTKSEPVSLDDM
VEILDRSKGPISISVRRLDDMDYVRKVEGPNNRRNYYESHPNIFFNNFKF
NMQTVRENRSIAERFLNRIDTEGDETEKTKRSLEHMEAFYDLMESFFEDF
AERWWEVKQEQLGEESNQEAVTPR
>SRU_2132 HD domain protein
MEDGPSPEGLFSPLIEHAIELSAQWHDGTYRKGVWRDPAFEVPEGEEVQI
PVIAHLAAVASIVRRAGWGEATVAAAYLHDAIEDMNQHGQRLRRKQLRDA
VGADVARLVVQVSEQKLDDDGQMRPWRARKEDYLEGIRTGPPDAAAISLA
DKIHNLWSITQSLQANEDIFSALSGDAEAQRWFHAAVLEASPPPRRPAPP
PDARAAADGARPVRGGPPPRSLKNPGSAKRNVTLATSLASTRRPPARCPA
PASSDPPAPAHSPRGLRRDRDRRAPGPRPGS
>SRU_2340 transcription termination factor rho
MSENDNESFRRLLELIGEKKYGFMRELRPDLPKDEDDPFMPPPLIGKFNL
RDGVVIEGDLKPGRKGGMQVGWIDSVMGLPPEEWAQLKDFDQGASVYPDE
KLDLITGTDDESMRVLDLVAPLGKGQRALIVSPPRAGKTVLLKDIAAGVT
ENHPEVELVSLLVDERPEEVTDFRRTTEAQVFASSNDRGEDNHVRVSTLA
MEHAKRLVETGKDVVVLLDSLTRLGRTFNLWVDGSGRTLSGGLDAEALKV
PRQIFGSARNIEGGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSEIVLD
REMADKRIFPAVNLRESGTRNEERLLGEVRRKKHNQLFRALNSRAPIEAM
QALLRHLRNSPSNAHLLNELVPE
>SRU_1707 putative ECF-subfamily sigma factor
MVRSIQGSIAMNTFPAFERQVSAHEDQVYRFARSMLNDDATAQDVTQEVL
VTLWEHQDELDEEGVIAWLMRVTRNACIDRLRARQRRRKTVRHDPDGVDR
APSPDRTPDRHAEAADLHDHVLDALDRVDDPYRRVVALRELQGLKYKEIA
EALDMPLNTVKVYLHRGHKKLRAELDRALDPVPA
>SRU_2855 two-component system response regulator protein
MQSAGHAVPVREAAGGPCGPGPKRIAPGPHRARAGPDDAYLPVYSSTRAR
APPRSYRSDATTHRPMPIRALIVDDEPLARTGVRQLVEPLDDVTILGEAT
DGDEAVRQIEAQAPDLVFLDVQMPEMSGLEVVREVGVEAMPLTIFVTAYD
QYALDAFEAHALDYLLKPIEEDRFEEAMERARQQLRQVEADTLNEQLRGV
LREYADAGETGGIERFTIRSRDRIYFVDAEDVQWIESEGDYVALHDGDDA
HLVRKTMKKLEEQLDPDQFLRVHRSYIVNVEHIDELRPLDHGTYQLRMAN
GTPLKTSRGYSDNIDALLDATG
>SRU_0306 probable RNA-biniding protein
MVNSYYTLRALAREWHADLEGTTVRDVYSQTKNELTVALSGAEQDWMVRG
SVQRPFLYLFRRPGYHKARRNVATLFEGTIGQSVAGVSIADRDRLVSIEL
GSGGRILWQLFGARANAFHVAPDDTVVAAFQRHDELTGTAAPEPYAAPMP
DTFEAFEDRWKPSRNKTRQAVQSAVSLFGGDLARETLHRAGVTTDAPADC
TAAERRALFEASMALREALQDPAPVLYGAGQFPDAFSLIPLRHREDEPAE
RFDTVDAAVADFVRRTLAEQHFHRLYDPLEEALESAAEHERRSAERMVEE
LQSESRAGRYERWGHLLMAQQDQVPDGAEEVELPDLFEDGAPVTIPVDPA
KSPVENAEHYYDRARSTRRSREEAEGRLDDTIEQAERAEALLQALREIDT
LDGIKAFRDEREAELLPFVERDDADVDDFPFRRFDLGEGFEVWVGKNARQ
NHDLTFHASQPYDLWLHARGVPGAHTVLHRPNRDAEPGKRRRYVAAAIAA
HYSKSKGSDVAPVMITERKYVTSPTGADPGVVRVDREDVLMVEPGLPE
>SRU_1823 conserved hypothetical protein
MNLDRGSQARVAVDRFVSLWGEMASTWGINRTMARIHALLYCAGRPLSTD
EVMECLEVSRGNASMNLRSLVDWNLADKTHRSGSRKDYYRAETDVWQITA
RIIEERQRREVHPVRSRLQECADLLVQDGASGADHPEPERALHQRLTSLI
DLLKVLEGVSEALLPLVRNKDIDQIEQLLAVALRRGESESTPSSSDPS
>SRU_0316 transcriptional regulator, GntR family
MELESGRPRHEQISDWLREQIEQDTYEVDEKLPSEKQLGDRFDVSRVTVR
RALQTLENEDYIYRQQGLGSFVKERRAAQGLVRLTDFAQDMAQAGLEASS
QVEHHAPESPPPAVAVHLDTDDQTVMRLDRLRLGDGRPVAFDRTWLPMFY
AQLLEGHDLEEETIYHILEAEYDIPVLRGHYRITAANADAPIADLLGVDA
GQALLLIERLSLTEGDKRVYFQRRYYRSDRVAYELELARDTTRHDAGEHG
MPLREFEPVFDDDVDAHQE
>SRU_1208 transcriptional regulator, TetR family protein
MTTATDGSEEAELRRHILDTARHLLVQEGYKALSMRTIADAIGYSATSIY
LHFDGKDALLHALIHEGMMALRDRLRDAAAQHPESPVQRLHALCECFVEF
GLENPEYYEIMFQLRPERMERYPPEKYRAARENLDFFARALDEGVDQGIF
EVDDSRVSASAVWASLHGTVSLLLADRVDVHIDPDAFIETAIRQVLRGFQ
APAASTS
>SRU_0785 xylose repressor
MSSYAIGVDIGGTNLKAALVAREDGLLEQTQRPTEARKGPEHVTSQITGL
VADLIDLAPSDAVMGVGIGAPGAVNWERTTVSHPPNIDDWESVNLRASLQ
SRLGRSLPIIVENDANVAALGSAFHGAGRHVDSFIMVTLGTGVGGGIIYQ
NKIFRGSTGGAGEIGHMTVDYEGPFANTGVGGAIEGYLGQRFLTRHARDR
IVNYPDSTVRDLVEGDLEQMSPRTLYDAATQGDEFAQAMLAWAGHKLGCV
LGSAVNLLDIRTIVVGGGVSAAGDYILDPARDVLPRFVTPGLRDDLQIHR
EDLGNEASLLGAARLAFEGKDAQVGTR
>SRU_1175 alkaline phosphatase synthesis transcriptional regulatory proteinphoP
MPFPSSATGASEARLLIAEDDPDLGSSLESFFAQHGYEVHHATEGEDALQ
EMTTLPPYDLVLLDVRLPQKDGFEVLREARQSGVDSPVIMLTVKDEHEHK
LRGFDLGADDYVTKPFDAKELAARVEAVLSRSQSALPDTGDVFAFGNVSV
HFPDETVTRDSEPVGLTDLEFDILTYFIEHRGRTVSREQLLRDVWGISGD
ITTRTIDRHVASLRKKIEPTPDEPAYLQTVYGIGYKFVTDDVPGPSPSAS
QTD
>SRU_2786 transcriptional regulator, TetR family protein
MQFQRTMFTAIPLPMSVDDRQREEKRQRRRTIVDAAETVLDEKGRDAMTM
ADIADEAEVSRSLLYVYFENMADIVLAVTHRGFRAMRERFEAAAQQHDTG
RAQIRAVGDAYVRFSREKPTLFRLVAQFESRAADPDESSERVRRCLAEAD
RGLQVISTAIRAGIDDGSIRQDLDPRQTAVTLWGATHGLIQLAANKGSGL
EKRYNLDPGSLVNNGLDFLGRALADQDGS
>SRU_0966 'Cold-shock' DNA-binding domain, putative
METGTVKWFSPAEGYGFVEPDNGEDDVFLHHSEVPDEDLEEGDRLEFEIE
ETEKGLNAVNIEALTEPEW
>SRU_2319 diamine acetyltransferase 2
MESSPHVSIRKATPDDAKTLVDLIVELATYENLLDEAEPSVELLEEHLSA
EALTGCEALLAETERDTAVGFALFFHNYSTFQTNAGLYVEDLFVRSTYRG
EGIGLALFRRLAEIAEKRGCRRIDWAVLDWNTEAIEFYDELGAEPLDDWT
TMRLDEEAIEEIATAGAAA
>SRU_0297 peptidase, S41 family
MAPSPMVRPLASSHLSTLLLDVLLKGAVLLLLAHVASALLRRWEAPASLP
RAAWGLAFAALLALPIGQMVLPQSSLPDPVDEVVRLADDSANGPAVRRPS
SRRDEPWSDSKSASGASGEGRTSASAGASGGAGASPGRSTSALGEGRADE
SSWLLGWAWGPVLLGVWGTGVVLLLARLLVGHLRSRRLRRQARRADAPDW
DERLQEVQEQLGSGRTAEIRFHPGATPMSLGLFSPTILLPDSAREWPPER
QRLVLLHEMAHLKHRDLLLGLVGQLGRALHWPNPLAWTGWSKLLQAREAA
CDETVLAAGEDPETYAHQLLAAARRAVSNHVPTPALQIARPTRLKERILA
IVGRDDVASWSPRRRALLGTLGLVLTLLVVAVRPLPNDWYPRAERSGSSL
AATTVSDAEMSARRAAEPNQKIQNLRAFATLYGYVRYFHPSDAAAEVDWE
TFAVHGVRQVTGASSRAELRSTLDSLFTPIAPTIQWYETGAPPPAPHRVL
PAADTSALNLVAWQHKGLGLGNRGPYESARLHRAHEDSTNRPPIAQAMQG
LDATPHRGKQIRLDAAVKTDTTTNLAHLWLAILRPNQRPSPEDLYDSPIS
AKNWTRVKPRLDTVAQDARQIAVGATIRKPGTAWIDQVELSVRGSSEEDW
TPIEITNSNFENKGENGQPAGWRTFGRSGAEVAVASEQVDAGERSLELRI
SPQSEASLFDAHPASGEVANTALGRNLSAQIPLALYSHNDQTLRPDGVPS
PDRLHNTLDAVQMGKLSAADEALRLADVVIAWNVFQHFYPYFEVVDTNWD
QVLTRTLQRAEADTSSRDFLRTLRRMLVPLKDGHGRVSHPADSLTAGLPL
QFDRVEGNVVVADTAASAAAQSCARPGDVLTAIDGTLIEEALQEEMRSIS
GSPQWRTVRALRQLGEGRPGTTARLELRREGQAVACQVARPSDSSTRRRK
RRRLQAEPRPDSIDVLPGGTHYVDLTRVGMEALRPRLDTLAQAESVIFDV
RGYPEGGNQELLQHLSSETLRSAHFEIPKIIYPDRRKIAGYTGGRWTLPP
KSPQLSGEVAFLTDARAISYAESIMGIVEHYDLGTIVGRPTAGANGNVNP
FTLPGQYQVYWTGMRVQKHDRSQHHLVGIRPDVRATRTVEGVRAGTDEVF
RTALRVLERSP
>SRU_1837 acetyltransferase, putative
MEERFGVAEDARDRWENDFPQWLDDETYRVYVAEVDGEVVGFATAHRWGP
PPIYAESSEVFIDELYVRPDDRRQGLGSQLVQAVRDWTGRIGAQRLRLNV
LAANEEARAFWAAQEARPLTVTLAVEHEGAEDATDDEGSKKIGF
>SRU_2492 PhoP3 response regulator
MSDSDPEGPSLLVVEDDSELSTSLLLYLESEGYEVTLAETGETALEEATR
LPGYDLIVLDAKLPDLSGFEVLRQSRDDGVRTPVLMLTGLGDHEHKMRGF
QVGADDYLTKPFETEELVARIDVLLRREAEATDETGTFRVGGLRVDLEED
DVSRDGEPVDLTDLEYKLLAYLLRRRGRTATREQILRDVWDLPTEVETRT
IDRHVNALRDVMDGEAEDEWPIQSVYGIGYKLEGAERTTGSEQETV
>SRU_0112 transcriptional regulator, ArsR family protein
MRHRLRRDIQFLLGRFPCHRPTPMSGNPASDAPADAHDGTCGTEAALSAS
LPTAAVTDATVRLLKGFADQTRLRILCLLRDREVCVHNIVEALDMSQSAI
SHQLRVLRDARLVSHRREGRHVYYRLADDHVREMLENALSHGAEPDSQ
>SRU_0384 putative AsnC-family transcriptional regulator
MSHRIDEIDAKILELLQRDGRMQRSDVAEEVDLSISAVSERMRKLEERDV
IEEYRAVVDAKRLRLDITAFIRVSVDGSEHYPNFVDQVEGMEQVLELHSI
TGAGSHLMKVRTTDTTALEGFLSDIQAISGVSKTTTSIVLSTFKEERTVP
TEPMELYDYDASSDE
>SRU_2547 conserved hypothetical protein
MAQWPSRFTNGLLNAALVAAGLGAAVLLYAFASRTVFTGPSPKRPPSDTS
QLVSRIIQVEVRNGAGVDRLAERTTQYLRDRGFDVVDVGNHSSFDQAHSV
VIDRAGNPEAARNVAEALGIPFSRVRQNIKPEYYLDASVILGRDYAQLRP
FQEAP
>SRU_0256 (p)ppGpp 3-pyrophosphohydrolase
MSMPTLGDAIALAAEAHAGQTDKAGAPYVLHLLRMMQAQQSTEARMAAAL
HDLVEDTDYTFEDLEEMGYPIVRRVKIADLEDNVDLEENMDATRLGSVGE
EDIGRPGRCLRTHRRLAGREEAS
>SRU_2462 bacterial regulatory proteins, ArsR family
MPATADAAFTDADRRLAQAFKALGHPARVAIVRLLAERDECVCGEIVDDL
PLAQSTVSQHLKALKEVGLIQGTIEGRRTCYCLNPEAMRALSEDTGDFFD
ALSLSQPSQHCC
>SRU_0176 possible sigma-70 factor, ECF subfamily, putative
MPDTPPFEEWCCRLKASDREAYAALFDAMYEPVFRYVRSITSSAEAAQDV
AQDTFIRLWEARESLSPSQSLEAYLYRIARNRAYNHERNRRTRDEKEPAV
RDKTAAQPASPARPDDQADADQLEDRLWQWIGELTGRQREALVLTRFEGL
SHEEAADVMGISPRTVNNHIVRALKHLRGRVNYYESDLLGRDEQ
>SRU_2537 transcriptional regulator, ArsR family, putative
MDRPLLPPDDIKPVARRFDVLGAPARLRLLSALHATGEQTVGELVEATGI
RQSNVSKHLSLMAEEGLLARRRDGVHVYYALDDPTLGALCMLVSRRLREE
DGR
>SRU_2449 conserved domain protein
MEKGKLKFFDTSRGFGFIEPLDGSEDVFLHANNISGMTSGEDLREGQTIE
YETEQTEKGLSALNAAPADETSGAL
>SRU_1357 transcriptional regulator, putative
MDGFALQSALQTDKNTRVIPFIFLTARADEEARQQGERKGVDDYITKPFD
METLLSRVERLLERIDMFQTQLDAEIGRDFSNRLLPDETPEIGGYELDFY
SESREQGGGDLFDWTETDEGTYFLTIGDVMGKGLRAKFYAFSFLSYVRGT
LHTLLEESTSPAALMGELNDMLLNDDVLEDTFATFLLLHWDPHAHTVTYA
NAGHCRPVLVRPDGATIHEHSDLILGLEEDVRFSEVSLDLDPSTALVSYT
DGLTEQHTQDGSMLGEDGVRDLAVEAYGGDAPIQALLDGVLSRSPSDSFE
DDLLVVWLERLAD
>SRU_1778 N utilization substance protein A
MRSEDLISSFGEIARSKDMDRDTLQIIVEDVFRAMLRKRYGSDEAFEIIF
NPKQGDIQILHIQEVVGDWEVEDPVTEIKESEAKKIDDGFAVGDEVAGGL
DVSEFGRRAVMTARQTFRQRIRDIEKEQVYQEYTELIGDIVVGEIYQVRR
HETLLMHEDTELVLPRDEQIPGDHYRKGNMLRTVVKEVRRDAGSDPQVVV
SRTSPVFMERLFEVEVPEVHDGIVEIKKVARIPGDRAKVAVESHDEKVDP
VGACVGVKGVRINAVVRELSDENIDVMQWSDDPQELIARALSPAEPTNVS
LNQDEDPPRARVEVPADEVSQAIGKRGVNIKLASQLTGYEIDVYREIPAD
EEDIDIEQFGDELTEETIGKLKRIGCDTGKAVLELSADALARRADLDRDT
AKQVLEIIETEFEKGPGIIESIRQGRFTVESVQTAEAADTDGTTPSEAST
ESSASSAGATESADSKGPGDADEEPPEAGAPAPDADGEETVVDGPAPNEP
EQADGDSEATEEGGDEEVEEQDEIPQSPSEEQQEAESTPEEPEVRS
>SRU_0298 transcriptional regulator, BlaI/MecI/CopY family
MNGSLYNELGRREGQIMDVVYRLEEAGAETIRTRLPDPPSNSATRSMLRH
LEEKGYLDHRQEGRRYVYFPTRPKEEVRRSLLDHLQETFFGGSLSETVAT
LLSAKSEDLSPETLRELEQIVEDAHDSSESSEAGSSKTDASGDP
>SRU_2581 RNA polymerase sigma-28 factor
MSRDLQPLVEQYLDDPTPSNREAVVMAALPLVRSIIGKISVPDHLLAAHE
DLESVGIVGLLEALDNYDPEQAQFATHAYRRIRGNIIDYLRSIDVLSREK
RKKMGAVQEALSSLRQMLGEEPSDEDVADYMGMAVEEYHDLLRDAQCRFS
LSLSRPSEDDDHTMLDVLPSDDGTEGFEQFEKASTQKHLEDLIQTLPERQ
QTILGLYYTEDLTLQEIGEVLDLSAARISQLLGKIQLTLQSKFEEHAH
>SRU_0499 hypothetical protein
MLWGPRAARRRISCHGFRRKRTSGEPPFMQFPERPFDGEASGDGVPSYEW
LDEWLCEYVDGTMDPSVEAVFEQYVEANPELRAHIERLRQTRELLCGGED
TGAPPTAPMEAAREVEEDLLRDAAPELLASEETSRSVVALGLASSIAVAL
VVGFLAGSMLVEPSTLSSGPATAIERQAAPSEGRDEASPRRGAADRGRPP
RASSFSSADRLLTLPAEAPSPSTDTGRAAPTFMTAGER
>SRU_1563 putative cold shock-like protein cspG
MRRRLAREPLLPFTRRRNVRGAPHSSAAQSGPENGNWVKKAPRRDRSGTV
KTTANGTYNSILHLRLLRCLAVPSTPDACVAPAERTNKHNDGYSMQRGTI
KWFDTEKGFGFIEPEEGGEDVFLHVSNITGSTGGDDLREGQTVAFETERT
EKGLSALNASPVG
>SRU_1164 conserved hypothetical protein
MSIWSRFKRAVKSLFGGAVSAMEDPRTILEQNIRELNDQVPEMNENIATV
KANKIMLEKEVKKTRDRVEQLSNRIKTALKSDREDIAKKYAKRLEDQKES
LERTEEQLKGAERAYEKALKVKKAFMREKEQKIQEAKDALRQHERAQWQA
EIADTMEQFEVSGLDQTHDEMVRRLDEESAKNEARMEMALDSVDTEALQI
EEDAEELRAQQVVDEFKADMGMVDEEETLDSESVEEETIDLPEDEEIEEP
SKTIGKQRNKSE
>SRU_0512 conserved hypothetical protein
MEQLDAIRRLNVAIFDDAHIIETFERDDLLMLLARSGGTDVGFKLGYRLN
EAAFYSAKGGVHPAHRRNGIARALLYDMLDVVAGRGYERFVYDTFPNKHP
GMTVLGLDEGFEVIRAGYSAKYQDYRLRFAWTFDAA
>SRU_2138 putative RNA polymerase sigma factor
MPESAFDPDRVRDAQNGDEQARNGLLRRLEPILRGYFIKRIGAETDVDDL
VQNTLVRIHESLDDLEKPGSLKSFAMKAALFELQDYYRGRYDMKEHLRDP
DLPLGQSTDPEDRSAQVDVEKALDALTPKAQRIMELREYGYLYREIAQML
DTTEAAVKMQVKRAFETMKDALTALLLLAWFFGL
>SRU_0875 putative DeoR-family transcriptional regulator
MTPSERWPAILLQLEPDAWTRATDLARALGVSERTVYRDVQAMVEAGVPL
QGVPGKGYRLPDDYLLAPIRLTRDEAVMLVLGSAYAARNFSGRYQAAARA
ARHKIEDVLPPDDRERVLSLRGSVSLIPSNVFGDSTEDGLLRQARHALVE
ERTLLATLAGASDNGPSTRRIDPYGLVRQGSAWHLVGYGHDREHVVHLRL
ERIRGLDMTDATFERPASYGARSQGPAAPSQRRVRVVFADEAAAAVQVPS
SVAVESREHLSDDRLLLTLNVDHVLEVMPWLLSWGRHAQVLEPRALRERM
ATEARAVADQYESAPTLLD
>SRU_1867 putative transcription regulator protein
MTAQRRTDPHAFCPRPICRSVTPMPEDEIEKLYYSIGEVGEIVDQEPHVL
RYWEQEFEVLSPRKNRAGRRVYTQDDVETVERIRHLLKDEKYTIEGARQA
IARQDAGAEGGDDIEDDLKALRAFLVELRDQLDE
>SRU_1455 protein kinase domain
MPDAGDILDGYRLDAVIGRGGMGTVYRATDQALEKTVALKVIAPHLADDD
TFVRRFREEAKALARLDADGIVDVYTLRETEEALFFVMEHVEGPSLETVL
RRRGQLEPPQALSLLRQVLTAVGHAHASGVLHRDLKPSNILIDADGQAVI
TDFGLAKILASDADLTATHDQLGTVAYMSPEQVKGLQNVDAASDLFAVGL
LAYEVLTGRLPFDRSGSDFVVQRAIVDASFPPPSTHAPEVPPAVEQVVLD
LLSKDPAARPPDARAALDRLPAPEAADEEPLLTPDAPVSPDAGFTPWQWA
GLAAGTLLVLMGTYAGVRATLGLPVLSAAGPAPPETTRTAAAPAGPSAQE
QTSPPVADDAGLSSREEKGSPAEASPPADASPGDEAPSDEPPPSADASSE
DSPPPAASSDGTSRTASSAASAPDEPSPSSEPATGAVTVRSDPGGATVRL
NERPIGRTPLTIGDLKPGTYRLLLDRDDHRAREATVSVAGADTAVVSPTL
LPRPAVVRLGARPDGEVHIDGASRSPTADGLVVDSLSPGSHTVVFTSALG
RWEMEMTLDPGETYERTIDFTERVESAVTARAPDGTPLPNATVTVDDDTV
GYTPQRLTLQVGERTIRVAKEDHAPAERTVRVEPGMDTPLVFELAPEPD
>SRU_1391 acetyltransferase
MNRTRPTGQGRPPGAPSHNRSIAPSVVSMPEVRPARTDADLDAARRLFRA
YVDGLDFALDFQDFEAEMEALPGPYAPPDGAILLADVHGEPVGVVAVRPL
GEEDVCEMKRLYVMPAHRGRGIGRALASAIIEKARTLGYDAMRLDTVASM
TAARRLYRSLAFEERDAYYHNPLPNAVYMERAL
>SRU_0748 rrf2 family protein (putative transcriptional regulator)
MCRARYDGRSRPIDEGRGRPGWGTLPERTGAHCGTHTLCVDPAAPFPHGP
NVQMLLSKSCEYGLRAMLYLGTLEDDEAAEDEDAGPTREYVSIQTISDDL
EIGFSFLTKVFQQLNDAGLLTSKRGPGGGVALTRAPDAISLYEIVVAIDG
NDLFEECVLGLPGCGEAEPCPLHEHWTEERDRMKATFQRTALNEVPDVRL
TPFVDDLAEADGASV
>SRU_0928 TetR family transcriptional regulator, putative
MASSPDPSLSRRERERKRRRQAMLDAARAVFAEEGYADATLDEIAERAEF
GKGTLYNYFEGGKEELFLAVFDEASQELEGLIRTVFHASPGGRPLRDTVH
EFVVRYFEMVRDQQDLFLVLVKEVHTIAFSDETERVEFFEKQQERVLGTL
VPVLREAMDQAEIRRLSPTLVANVLFTSLRSMGTHHILEGDHAPTDGPAG
AVRPLNNPDRAADALTTILFDGLAVGDASSASA
>SRU_0252 TcrA
MGGPRLRAGLLPFLSATVMANQSPSIPPAPVLLAVSHEQARDLLADRLRR
ADADVQSVGNGTDARREIQEQAFGVVVAETRLPGRSGLELLRSFPTLRPP
FVLLGQQGNDEEIERAFELGAADYFTLPFSPSIATARIMRVPRLVAAASG
SRFVSK
>SRU_0029 conserved hypothetical protein
MRPHTPPAPTALALTFFRSSPVLPMAIETLDLDKLAEKTGNLYETVAILS
KRSRQVASDTRSELDDKLSYFEGFGPEMEDARMQEEQEKVSLEYEKQPEP
TEVAIDEFLEDKIYYRKPDDE
>SRU_0357 transcriptional regulator, LacI family
MLACKRLRTQFITFTPLLFVSTTIYDIAERADVSTATVSRVFNDESGVSE
DTRQHVLDAAAALNYRPHASAQNLARQHTNQIAVVAPVVANYFYMHVMRG
IQHALADRDMDLMVHAPANPQDRIHEQPDPKSLNTYMARALQPGRNDGIL
LLSMPLTDEWADRLAETSRAVVLVDGEHPRFESFAVDSREGGYKATQHLI
DRGYERIGHITVEYDPPPARYRREGYEQALRDDNRAVQDKLIAASDERPF
AFSEKGGYRAMTTLLGRKPRPDAVFAASDMQAMGAMQAAHENDLRVPEDL
AIVGFDDLELSRCAGLTTLRQPARTMGTRATRTLLRRIEAAGAPPVSSTV
FSPELVVRRTCGERPESEAASPGFVLRDQ
>SRU_2788 two-component response regulator
MSSEAVRDKTQIVVVDKHPAIREVLRSRIEGRPEMELEAESANSEDALAL
VEQHDPDVVVVEISLGDADGLTLIQEIRSTVPEVRILVFSKYNEDLYAER
AVEAGASGYVMKTKPTEEVMRAIELVSEGQVFLSRHVSSRILSRLVRGSG
DTETSPLEKLTDRELTVFRKIGEGHSVRQIADQLDLNRKTIETYRRRAKE
KLGHETVEDLLRHAVQWVEQGTREQTDTE
>SRU_1193 transcriptional regulator, BlaI/MecI/CopY family
MQRKSLTHLGETEMEVLHHVWDLGEATVADVRERILEDRDVAYTTVMTVL
KTLAEKDYLDYHKEGRSYVYQPAEDPDAVQHSLLRRLMDKVFQGSPSALV
QTLVRREDLSDDEREEIKALIDALDEKDPETDDADDS
>SRU_0202 hypothetical protein
MITRKGRDVAQIKAVKEVAREDSLPSLEESRASVTVSGEDLSETVRQQRW
EHRDRVLSECAGSIATECFQSALGASRPSAFRVRWEHRDRVLSECAGNAA
KPCSRSTHGTAPHCPCATCPRSVLLICHLHCPEK
>SRU_1519 transcriptional regulator, GntR family protein
MSCVGLITPFAITELAAMSTLDIDPDANVSVREQLVNQLRYLIASGHYNV
NDTLPSTRTLGDQLDVSFHTVRKAYQELEDEGLLSSQVGSGYTVKERSPL
AKSERMERGAKVVNDTLQQLVGLGLSDAEIESLFQEQATLLDHAGLERKL
IVLGPHDELNRLCADQLSTALQKTVLPVSLSRIERHKDADYAFSPYPYLA
QVLETLSRTDTMGFSTHLPPAVLETVARLRDRETLGLVTRYQDTIPPLSE
ELRSQTAYDGQVIAASIDREADHLQSFVQETDLLLATPASQRRLRPYLDD
SLHDVEELKLLVGKDSIEAIANAVPA
>SRU_2746 hypothetical protein
MPPRPTLRRHEWTRTRNGEVPRHFSLPSRAGAAAHEARVSLAVAVEEAWA
RCCRRRPGRERLSPCHDGDEEGTKDTAVRASARGQPRRSCTPADSRILAP
TVARVMSTSPDDNRVWRVFYTRARAEKKCETRLDERRIDVMVPKKTEVRQ
WSDRTKEITEPLFRNYLFARVDEKDRLRVLRTNGIVRCVHFDGEPARLRE
ETVDRLQKAQAVPERLSTADLRPAVGETVTITGGPERLQGLTGKVLQHRG
QTYLLVQVRAVRQAVKIEVAADWVQTTSNT
>SRU_2249 RNA polymerase ECF-type sigma factor, putative
MTMSPSSSEDSTPRPGAAPRAGASPPEDDELSFDVLRNRLGTGDEAAFER
IFRRLSEPVFRFVCGMVQDEALAHDITQDTFAKLWSIRDRMDTVDSLQAY
VFQMARNRVYNHQRDEAVRRDHEQDVRDAHPDASPPAPDETLDADLLRSL
LERWIAELPDRQREALTLRRQKDLSHDEIAEIMDVSPNTVNNHIVRAMRT
LRERLGEYRPDVRSEP
>SRU_1718 hypothetical protein
MSSTKLGARSGNKLRKKAQIVVNYNHPIRRVKTGESAASVVSGRVSLVGC
PINHGTMSSWTRVSFDPGKTGIEAITNDLQKALEDPDTFIHNDMVVWKAF
DEVDAQRLTDLGIEASRALVMHVSDTSNSGSGRLYKRIDSEFILLDAMSG
GEGYFGRDVLAYMQREHGLVGAA
>SRU_0861 putative membrane protein
MSSYPTPSEYQEALQAPAVAFADPELQDSTPRTNALGLPQPITGSFAAVF
PVTTDPGGRYAVKCFLSERPAQHARYEAVAEALDAVDHDAFVEFAYQPEG
ISVRGDAYPLLKMEWTGGTTLNRFVEDHLDRPDVVDRLVEAWARLMADLE
DMDLAHGDLQHGNVLVETAGEALRLRLVDYDTMYVPALEGRASAEVGHRN
YQHPDRTDADFGPALDRFSGLVVYAALRACAVRPELWDEYDTGENLLFRD
ADFYAPEESPLFDALAETESLRALTDALRTACYVEPADVPPLADVREGRL
EPSQVSVSRSRARQGRDAAERSTVARAFLPATIGGGGVALGLAAAGGGLT
AAAVLLVGIGVGAGIVATRYRRLSLVRRRRRLEQEADRFASTIRELDREL
ESLQKKRAELRTSMDERRQERLREIQAKALHDRLKHHFVREVRDIDGLTH
KHVVRLKAANLRTASEVTPEAVEDVRRISDRARARLKMWRAALEEKYADE
IPDALSPAQERRLQRYIEHRIDDLDDQIGRTREKIQTQRTERERIEDRLD
EMPDLSIGRYVRYLLRIDTLPDRTEEPPAPAPRPGPESSTDRVPVPEPVD
EDRSWWERA
>SRU_1015 predicted transcription regulator, ArsR family
MRDPDSDVPFERLAELDKLIHEPARLSILTALSSCGQADFTFLQRLTGLT
RGNLSSHLSRLEEAELVDVDKSFADKTPVTTVSLSENGRRTIARYWDDLQ
ALRDAADRWDADDVDATE
>SRU_0749 response regulator
MRALIVDDEPPARSLIQEYLEEIGRIEVTGECGTGRAAIEAINETAPDLV
FLDVQMPGLDGFDVLERIDTLPDIIFSTAYDEYAIEAFEAGAVDYLLKPY
TRARFQTAVERALERHDRDDDAYADQLATLLQEAKAETDDSPERLYVRHG
DKIIPVDPDDIRWVEAAGDYSKLHTDETTYLSSMGIGALEDRLAPTRFMR
VHRSHILAFPAIDYLYSDGSGGYKAVLDDGTTVRVSRSYAPEIRDRLV
>SRU_0082 HTH-type transcriptional repressor Bm3R1, putative
MVRVTGMNVHSKPPTRPIEDTQGKRGDILGAGLRLFDEQGFHGTSMSEIA
EAAGVGAGTIYRYFDGKEDLVDQLYAEARAAAHESIMEMGFDEDASVRDR
LRTTWRAVIRNYMECPRLYRFILQYESSAYLRRAQRAQPEDLRSPFQEIY
RDGVEQGLFPALPQSVYGSFFIGTVTHLVQEHLNDGPELDEELIDQSFEM
LWAAYTKASVDPGTG
>SRU_0126 hypothetical protein
MWPAPSVPRPPSTLATTVLLCAAVLLGGCTSPASDAETVSEELEQLASSY
EVRLADGLETGLPVRDDGFAYAVDLGNTMSAAVALGNRSLFDRAYGMIRA
HFLRVDTGDPRARHTVLWRYKPGTAPDASGSKETGLLADALWEAYERWGN
PEHRRMATKVLDAYLRHGYWETDRRFVVKNYYNYGTQTLSENTWVLNQMP
HTVRKIACGTQDASLFRRANAMARFAEGAYLKKGFSREMYDKGIETVFDG
ADGYYSPNGLLKLQSSLEIAKALLPFTLAPAREVIGFIRASYPDVSSAYY
YNPRSKAIAPLAETSEQTYGLSEKALVLLLATRVRDSPGEAFLQDFVDRE
IVPELKRRRDESSSPFYFDVPLMLEAAQRYLRPDQVPAPPGESECTL
>SRU_0332 TENA/THI-4 family
MDLTAPLDTRAFSVPPFAEACLDHADDTWTAAFDHPFVHALAEGTLDADT
FMFYQMQDARYLEAFADAASLLSTQCTDPDDTLWFIDAARLAIVVEGELH
EGYGDELGYGPDDIRQLQLTPNNRAYQNHMIERAQRGTLVAGTAAITPCP
WLYVELGQRLERDMGAIPEDHPYAEWLAMYRDPEFNEYMDNLLERLQRFA
DAADDAARERAKTAFTTSVRYEWMFWDQAWTQQEWPV
>SRU_1977 hypothetical transcriptional regulator, TetR family
MVVSDHSLIPPSIWGFLSHSPTPMTKRDDICEAALTLFAENGIEATTTRE
IAEHAGAAEGTLYRHFDGKADLAQWLYRRCLNQLRDTLTDADEATSTPTD
RLEALVRGVFDFYASRPASCTYLLSARESGAVGASESDAPPSPVHLFASV
LDEGTRQGVFRETSSPLVAGWILAMVQRTVLFLKTEALSLSTQDAIDQTV
DAARRLAMPSPR
>SRU_1632 PspC domain family
MSSPRSRSQRSSETTDESFEQPSAFEVGETTLDLDDISEEELDTLYFSDD
TDTSGLFNLPTVTGLTLILAGTIYLLSELGAWTGLAFSGLILPWLVGVGV
ILLGFGLLTWRSSAKDDPESTTTKKAVEAETGQTKVVEEPKKSDNKQLTR
SRTDKKLFGVCGGIAEYLNLDPTLVRIAFVVGVIGSGGPFVLGYFALAFI
MPKEPPLTPEERLSIIRDEVDES
>SRU_2563 transcriptional regulator, LysR family
MELRHLRYFTALADELHFGRAADAVFVAQSTLSQQIKAFEEEIGVALFDR
ASGGVELTEAGHTFLPYAKRVLREARRAESVARAARDGLAGLLTITYAAS
AMRSGLPAIIKTFRSKRPHGELDLVEQTTREQVDALRGKETDVGFLFLPI
NERGLRVQPLFTAPMVVVLPTGHRLADRTSVPLRELEGEPHVIWARSGAP
RIHDAYVRACHEAGFTPQIPQEIERGESFLGLVEAGLGVSIAHASNVQIQ
RPGVGYAKIVEPTVPLTLGLAYRRDNDSPLLDRFLETVADEQDAFTQNPI
>SRU_2677 acetyltransferase, GNAT family
MALCKRVCERLRRRRGSSAEHLPAACVSPTACLLRKDRCLMASMNVTPVR
RDADWEKARAIRTQVFVEEQECPPDEEWDGHDATSRHVLGWVDGEAVATA
RWRTVAYDEEIVAKLERFAVLDGHRGRGHGTQLVRTVLDDARRAGFDTFL
VHAQAHLRDWYEALGFESTGRTFEEVGIPHVEMVRREDP
>SRU_1934 RNA polymerase sigma-H factor, putative
MELPQPCTASDPTIEALKAGNEHAFRCLFEQERERLRRFVVKLVEDADEA
ENIVQETFAEAYRQIEDFRGEASVSTWLFSIAKHLAYGHLRTSDRHNYLE
HETIEFLQVDRDDSVSGTQREVERSERKQIVHDALQELPDHYRRVVQLRD
LEEKSTAEAAEQLDLTEINVRVRLHRARKALREHLCERMEC
>SRU_2797 thioesterase domain, putative subfamily
MPNPSLKDTALDELERLITEKMPITEHLEFELAADEQGRLRASAPLKPNA
NHMGSAFGGSLSMLATVTGWAMMHQLVQDAMHDAMEDMRERVEVMIQESD
IEYLQPVYENISVVCEPPDEDAQERFQEMLDRWGRARIELECKINEAGER
AVTFIGQYVALDRGEEQGDGAPFHMESCDPADL
>SRU_0046 ATP-dependent RNA helicase
MAADISQSKYTNVIDLTSEAQQERRRDEVGSELREPDPPLDEVTVDELSG
HMEQAVHAAGWTELMDVQRKAIPYTLDGRDLIVQSQTGSGKTGAFLLPLF
DLVNPDKEEQQVLILTPTRELARQIHEEFEQMKIATPRTNRMEAVLIYGG
VGYQPQIDGLKNGAQVVIGTPGRILDHIKKDNFDASTLRMLVLDEADEML
SMGFYPDMKDIVEHVPGDRVSYMYSATMPPKVRSVAREFLDDPGFLSLST
DKVSVEENEYRYYLVNPMDKDRVMAQLLELEEPESALIFANTKREVSYLN
KFLSNKGYDIDEMSGDLSQRDREEALDRLREGKLRLLVATDVAARGIDVS
DLSHVFIYDVPQDHEYIIHRSGRTARAGEEGTTIVLSTHEDEYELKRMAN
TYDIELEKAELPADPHSEARELLQERYANAEAPANGEEPGVEDFVPLVKE
LSDEQPELLASIITELYAEAKTEDEEEK
>SRU_2789 DNA-binding response regulator, LuxR family
MPDQSTTHIRTFLVDDHPAILEAIRNRIDDTLDVEVCGMATSSDEAFRKI
EDMEPDTAVVDISLEDAHGLDLVQNLQSQCPEVQVVVYSMYDEMVYAERA
IQAGASGYLMKDQPTEDLIEAIRVVDGGEVFLSREMASQILNKVARGESS
EPSFPIEEFTDRELAVFQMLGEGCSIEEIQDRLNLARKTVETYRRRAKEK
LGFDSVSKLLQFAVQWASAPGAGKKVSGMPDGDAEVSADGKASGEGEEEN
TDE
>SRU_1512 HTH-type transcriptional regulator celR
MPNDAKENSNQSKATIYDVADHAGVAISTVSRVLNDSEDVADQTRDKVVR
AIQELQFRPNRTAKSLAQRSTRTIAVALPTFTTPFHNELLKGVRDRLDDE
DVDLLLCDLEWEAPKHSLRSFLEGGAMDGLLLVGVTPDEDLADELRMLGG
PVVLVGAELAGFDSFYWEDQPGAELAVNHLIDQDYTRIGAITTPHDNRVR
NERIAGYRQALEDAGIEFNSDLVVHGHTSKHDGFSEESGYEAMQDLLALD
DPVEAAFASSDVQAIGAWQALREEGFEVPDDFAFVGYDDIKVSRFIGLSS
VAQNMHNVGNEGTDLLLDRLEKRGPEKYTSRLVEPELHIRKSSQRP
>SRU_0677 response regulator receiver domain protein
MEDIALVDDHPLLRKGLARTIEAEADLNVAGQMDSAEEALSEIEDLAPDL
VIVDISLPGMSGMELIKHLQSRVPDVQILVVSRHDETLYAERCIRAGARG
YVMKQEAGDDIVQAIRKVLNDRIFVSEEINERLLQSMAEGGRERIMQSPL
EVLSDRELEVFELTGQGLSTREIAERLHLSVKTVESYRARIKNKLNLDSA
NELMKHAVQWVESEEST
>SRU_0187 transcription regulator
MEVEIDDYGRIVIPKEVRDHLGIDSGTALKLTSPLDESRGFFLTEK
>SRU_0234 transcriptional regulator, AbrB family protein
MPTSTLTTRGQTTIPKPIREALGLQPGDRVEFILHGDRVLLRRAGADLSA
LDGMLDRSGQEPVSTGEMDNAIGTAISEGPSASRTGTEAKTEDDHDRN
>SRU_2244 transcriptional regulator, AsnC family
MYVAHTNAYLISPHKTRPGNMVTAIVLLDTKRGKVNEVADALAALDGITE
VHSVAGRVDLVAMLRVDENEALADLVTNEIRQVDGITDTETLIGFRVHSS
HDLENMFGVGMD
>SRU_1472 transcriptional regulator, putative
MSLRAPHLTYYGLVDGTARVDVEGEEGLAVEAGESLVVPPLQTITVDFPA
AHEDPARYVVLRIDRSQVRSILDRVASDVPSGPAVQDGGRDDPAYFHVPE
NEGIARVLNMVAYLFREDPPNRDRLIDLNAMELLIQMLQTASRPLLVGEL
PRNTSAGGLAAAVQYIQDNLDRHISIDELVEEACMSKSSFYRHFSDEFEM
SPLEYITRERVVRARELLADSDNTVTNVSHALGFSSTSHFIDMFKEHEGV
TPKQYQMDLLD
>SRU_2045 iron dependent repressor, putative
MRSPSIEDYLKALYKLEDDKGAPVSTGALAEAMDVSSASASNMIKRLDEL
EFLTYEAYEGATLTDPGRTVALEVLRHHRLLELYLKEVMGFSWDEIHEEA
EILEHHISERFEDRIEEMLGHPERDPHGHPIPARDGSVDALPTRSLADLP
EGDAASIDHVADEDGELLDLLEQRGLLPGATVEVADTRPLDGLLVVAVDG
TEQLIGRPVAKKVVVEA
>SRU_1283 transcriptional regulator, putative
MLNLFVAAAEVRRRVEQVCEKHDLQFSHHNVLRILRGVHPEGHPRCEIIE
RMLDPSPDVTRLIDKLVDRGLVRRTTSDEDRRMTIHTITADGLDLLERMG
PEIREVQRWFDERVADRDLQHLSRICEGIYTGFQDDG
>SRU_2762 extracytoplasmic function alternative sigma factor
MSDEDLMSQFQAGTVEAFNILVERYSDRLMQYLYRFLGDKKRCEDLLQET
FLRVHRNRHSYRRIAKFSTWLYTIAGNLARSEYRKRKRRRMQSIQSVNRD
NEEYEMEIPDESFSPDKHAESTIQDHYIQEAMNEIPPAFREVVVLRDIQQ
LAYDEIAEITGLPMGTVKSRINRGRTKLQALLQDVYPFQEEE
>SRU_0477 transcriptional regulator, TetR family protein
MFRGCRRLSGKPIAAPATGPGRDRTALVPFGEPAPPSRRPWSATPRRGDA
FLYTTVNHLVEPSSGPSITAITSAPDALSMPPPSPFPSEYSETERQIFDA
ALHVFAREGRHGARMQAIADAADINKAMLHYYFQDKGTLYEEVFTYTVER
FMASFGASLREASTFEHTLRAFIDGYVEFVRSDEAAMRLMVQENLAGGRL
LGTHLREATNAGDAPPQILVETIAAAVDAGEIRDVDPQHTVLSVVSTCLF
FFMARPTVQIMHPDAEDDWGAFVEARKEHLFDLIYHGLAPRPEGGSGSRA
APRE
>SRU_2830 response regulator receiver domain protein
MSDAPHLLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGID
LVLLDIRLPDLSGLEVCERLRLHRPELPILMLTALDAVEDRVRGLRAGAD
DYLPKPFAFDELLARIEALLRRVDRPSEPGRVEDGPLVLDPAARTCTFDG
EEVDLTPTEFDLLAFLMARHGQALSRDTIHQEVWGHDFDRGTNLIDVYVN
YVRRKLDEVGCEAPIETVRGIGYRYTACSEADASADDRSSPTDSASS
>SRU_0630 putative transcriptional regulator
MPSFGPEDSCGCDLCPSTFPKHPLRRRASLCCSASTVSLKSFSTMSPETS
KRPKSPDTEVWRVFYTRARAEKKAEQRLEDRRIEVLVPKKTEMRQWSDRK
KEVTEPLFRNYLFARVGEKDRIRVLRTNGIVRCVHFDGEPAQLREDTAQR
LKKIQAVPDRLSTADLRPQVGSTVTITDGPERLRGLTGEVLEHRGRTYVL
LRVKAVRQAVKVEVNAKWVEETEETAQRA
>SRU_2286 transcriptional regulator, TetR family protein
MPRSPTFDRDAKVEQAMQLFWEKGYESTSVQDLVDHLGLNRSSLYNAFGG
KHELYLEALDRYRQEDIEWLRGQLREAPTALKGIRQAFVTVAERATESCC
GCFTTNAAVECAPRDASTQKRARESFEKMRSLFRTAVEQAQEEGAVDPSR
DAKALGCHLTNVYNGIHLTAKTDPPDAVVQDIVEETLRGLTCSARDASP
>SRU_0416 algR, two-component system, regulatory protein
MLRTLIVDDERLARRELRRLLEPHGAVTVAGEAANADAAEAAVHEENPDL
LLLDVQMPGDSGFDLLTRLDAVPHVVFVTAYDEYAIRAFKVNALDYLVKP
VEPERLAQAIETVQARAAEDGPQAAGAGDEESRSPLAAEDQVFVKDGERC
WFVRLADVRLFEAAGNYTRLYFDGEEPLTHRSLSYLEERLDPDRFFRASR
QHILNLRWVADVTPWATDKLKATLEDGTEVELSRRRSRAFREQLSL
>SRU_2091 cspa, conserved domain protein
MRTSTVKWFDAKKGYGFIHHPDDGEDVFVHYSNIQSDDDFKTLKSDQHVR
FEMNDGPKGLHALEVAPLDDEEAPSADDDNEPELTPADVDPTATVDPSPS
GDDSSSDSSW
>SRU_2491 drrA, response regulator DrrA
MLIVEDDTDILMGLEEYFELEDYEVDTAEDGETALQKMKDMDKCDVVLLD
VMLPEKDGFEVLEESQEMGFSAPVLMITARGEQESKLKGFGLGADDYITK
PFNVEELAARVKAILQRTMPPAEAPMDVYEIGDVEVNFSTHEAYRNGDEL
NFTALEFDILRYLIQHKGRTVTRKQLLRDVWGIDENIITRTIDRHMASVR
KKIEPDPSDPTYIETVYGIGYRFDEE
>SRU_2488 drrA, response regulator DrrA
MTTAAEKRILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEA
YDLIVLDIMLPGTDGFDICRRLRQEKCPTPILMVTAKTEEVDKVLGLELG
ADDYITKPFSIREVLARVKALFRRVEVDQETQGQADDTPIELGKVVVEPE
KRKVTVEGEAVDLTSKEFELLLLFARHPGRAFSRDELLDEVWGYQYSGYS
HTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFAEREELAARDV
>SRU_0574 drrA, response regulator DrrA
MPITADPSDIDVLVVDDEKDVVEVVGHFLEEEGYTVHTAFDGEEALETAS
GKIDLIVLDIMLPGVDGYEVCRELRDSVETEEIPIVFLSAKTEEEDQIEG
LMLGGDDYLTKPVSPQVLVAHVKAVLRRSGVEESSILEVDGLKIYEDEYR
AELNGEDLGLTLTEFELLRYLVRHPRKAFTRQQLLETIWKDAMMVTERTV
DAHIKNLREKLGDFAKHIQTVRGVGYRFVQEEESAEA
>SRU_2292 drrA, response regulator DrrA
MTEQQLGTKESTILVVDDEEDLLSLVEYNLEQEGFGVLLARDGVEALEQA
REHDPDLIILDIMMPKMDGIEVCQKLRKDAHLRTIPIMMLTARNEEDDKV
QGLDVGADIYLGKPVSVSVIVSQTKALLRSAHRYEDPPDQIEVHNLRVDR
DRYLVYQENGDGETEMRFPRKEFELLYFLASHPGRVFSRQEILDEVWGRD
VYVVDRTVDVHIRKIREKIGSEYIETVKGVGYRMKE
>SRU_1424 greA, transcription elongation factor GreA
MDPSSMADDETVYMTEEGLEELKEELHQLKTEERSRIADEIAEARAKGDL
SENAEYDAAKEEQGKLEARIKQIEDTIARARIVDESTVDDSKAYILSDVT
VENLDTGDEQTFTLVSEEEANISENKISVDSPIGEGLLAQEEGDEVSIDV
PAGTVHFKIKDISR
>SRU_2353 hrcA, heat-inducible transcription repressor HrcA
MLTGGSHWGKCPAKSGWGTDHSAQRPGHPFEKPLHAPVSPVDANDDRPSL
SERERDILRLVIEQFVDTAGPVGSRSLAKDANVDLSPASIRNTMADLEDM
GYLDHPYTSAGRVPTRLGYRTFVDELMDTPELSEVEQEVLKVKLARLVSD
TDELLSESTRLLSKLTNLLGIALTPRLSTAMLDRLDIVPLSGSRLMFVLS
VRGGLVKTVVLSFEPDLKRSKMDRIVSTLNERLAGLTLHEIRDTYEERLD
DLPDETGLIALVLDEASILFSEPDEGRLQFDGTQNILSQPEFQEPDDMRH
LIETIEDEDRIVQVIENLFEANPDAVGQAVVRIGSETDQEEMDAYSIVLS
PYQLGDTVGSLGVIGPKRMDYGRAVALVENMAAVVNRPADDETTDPSVPS
>SRU_1177 lexA, LexA repressor
MGRKKLTAKQHEFLQFLIDHTRETGVWPTYREIIDHFGYNSPNSVTQNLK
ALHRKGHLTRDDQGYHLATRYQEQEEPGIPVKGIISAGTLQEAVEADLGT
ITLDMLFPNLDQIFAIRVSGQSMRGANIRDGDYVLLIDEDIPEGGIGAVL
YDGETSLKRVHHDDEGLRLEPCNPEYDDIHIQPDVFEEVTILGRYVGHIN
DEGIHKKSGQGTPAVR
>SRU_0063 mfd, transcription-repair coupling factor
MSLTAIANRIETTAAVSRLRAWTAEAQRGDRSPALHVNGAAGSLPAFLLY
HLHREPGAPLCVLTPDEDAAAYLQSDLEQLVGEPDEAILRVPATQKTPYD
PDQIADSTPLIERADALQRLAEGFEGILVTSVPAVGELVPPPQAVQRETL
TVENGEEIALEALADRLLEQDFSPVEFVEEPGEFARRGGILDVFPYAGTY
PIRIDFFGDEVDGLREFDPQTQRSVSRLTTARLVPNLEREEAARGSIALF
QYLPDEAVLATLDEAQVREGAQAQFEEAAAAYEERRAELAENDEVEQTPE
DLTPPDDRFLTGDQMAAALTRHPRLQFGTFSQSSTNGTPTDTLDLEADPQ
PSFNSDMDLVRKRLQKNGDRDLDTFILCDSHGQSSRLRDLLESEIDHGWA
RLVVESLHEGFEWPGAGLAVFTDHQIFNRYHRPSTKQWEGHADGMNLRDI
KNLTRGDFVVHVDHGIGRFDGMKKITVRDNQQEAVRLNFADNDVLYVNVH
ALHKLNKYTGKEGHQPTLTKLGSEQWEKKKQRTKDQVKEVARDLIKLYAK
RKASDGYAFSSDTTWQREMEASFEFEDTPDQAEATKAVKRDMEEPVPMDR
LVCGDVGFGKTEVAVRAAFKAVQDGKQVAMLVPTTILAQQHHDTFSERME
RFPVNVEVLSRFRSRTEQSKVLEKLEKGQVDILIGTHRITSDDITFDDLG
LLVVDEEQRFGVKTKEKLRKMREAIDTLTLTATPIPRTLQFSLLGARDLS
LIETPPPNRQPINTEIHTFDEDVIRDAIVYETSRGGQVFFIHNRVKTIHE
VAEMVRAMVPNVRVGVGHGQMSASELEDVMLDFVNEKLDVLVSTSIIENG
LDISNANTMIINHAGEHFGLSELHQLRGRVGRSQRKAFCHLLVPSVHGLT
DDARERLKAVEQFSDLGSGFDIAMRDLDIRGAGSLLGAEQSGFIEDVGYE
TYHKILDQAVKELREEEFDDVFDGEAVPPGPETSVDVEEDAYIPESYLRD
NTERLNLYRRISDAPDETTLVDLLDEMEDRFGDAPEPVQNLLTGARLRLL
GERLRMPKVVYKNERLFLYLPSEDADPYFYDEVFHPLLEKLTLLDREYVM
KDDVEGGLMRAIVQDVNTLDEALQVTESLLLEETKTMATVEA
>SRU_0015 nusB, transcription antitermination factor NusB
MSSRRDAREQVMKTLYANEQTDGDAEQALHALVRVPLDEDPSTRDFAEHL
FRETLKTMEEADEIIEKHADNWEIHRIAAIDRSLLRMATTELLKFEEVPP
KVSVDEAIEIAKRYSTPRSGTFVNGVIDAILLDLHDQGRLNKTGRGLIGM
DTIQERAGSS
>SRU_1763 nusG, transcription termination/antitermination factor NusG
MAEDTETDTWYVLRTFSNHEKKVRRYLESEIERIGLEDQVEEILIPTETV
FEMKGGEKKTKEKTFFPGYILLNCTLTSDLRDLAEDLPSVIGFLTTGTGD
EPTQLREEEIKRILGKMDRAEEMGEQPEMPFKVGDPVKVVDGPFDSFNGI
VEDVYPDQMKVKVMVSIFGRKTPVELDYLQVEHEE
>SRU_2406 oxyR, redox-sensitive transcriptional activator OxyR
MTLAQLQYLVALDTHRHFGDAAAACDVTQPTLSGQLQRLEEELGVELIDR
SHQPVVPTAAGEPIVEEARAVLAARDRLATTATEVKDRVTGTLRLGMLPT
LSPYLLPLLLPALDTAFPEVSLVLREWPTTEILDALRTDALDAALIATNQ
AGPDLHDRVLFTEPFVGYVAPSHRLADRDALAPAALSIEDLWLLSEGHCF
RDQVLQVCGRAPSAPQAATQFESGSLETLVRLVRNSGGMTLLPRLATHQM
PEAERSTFVVPFADPAPTRNVRLVTRRRHKQRLVDAVVSTLYDALPDTVT
RR
>SRU_1381 pilR, two-component system regulatory protein
MVEPLLDPVTAPAASTGQILLRGLLARVEVTHRDRSGRALELLPTAEAVS
DSCTCVRADVALWRGWAHVRRSESVNEATRGLHLLKEGRELFASICDPVG
RCWALLGQATAYSALDEHGLRHRVLDDASGLLDRLQDAQAEQWLQQLRRR
APSASSGHDEPPSGPPADPTTTVDGFVAESREMQAVAATIRKIQPSRSPV
LITGESGAGKRLVARTIHATSPRADGPLEHVSCAPTQAGASLEAQLFGAQ
TDDSSHTGAVQAADGGTLVLEDVDALPPPLQSSLLDLLNGAAPPATEAAD
DASLDVRVLATTTADLDARVEEGRFRPALRNRLRVISLHVPPLRERRPDI
PLLARHFLDRMRPEGSALVSITQPAMEALLRYNWPGNVRQLRNEIERALV
HVQSEPAPTITLDMLLDAIVENARERTSPDTSPDASDAILEPDQTLNDVL
SRTEKSVIERVLQACDGQVTASADVLGLTRQGLYKKMKRLGIDASAFQPT
SEPTPAS
>SRU_2839 rbsR, ribose operon repressor
MSVTIRDVADEASVSATTVSRVFNHDHLVNSETREHVLEVAQRMGYAPDA
TARSLSSGRTRSIGVILPAPHGEFFSELIRGLDDAAQEADHFLLIASSHY
NPDEGRSALESLAGRVDGLVIMTPRARSDPLTEGMDLPTVFVNSELQGDA
FDLYRMENREGAAHAVRHLIEAGHSRIAAITGPPGSYDVERRMRGYRDAL
AEHDLDEGPLVEGDFTQKSGYQAGKKLLEGEELPDAVFACNDYMAIGAML
AFQESGLRVPDDIAVAGFDDITSARYANPPLTTVRVPVYELGRRAGERLL
QRVQSSRPPESETFRVPHELKVRDSTKPRDS
>SRU_0369 rbsR, ribose operon repressor
MTIDQVAELAYVSRSVVSRVLNDHPNVSEEARERVMRVIEEHDYRPSSVA
RSLATDRSFEISVLTPRRGDESLANGYWPLLYSGLFERCLERGYFVSLSM
VSDRMEDEIEDRARDSRFDGYVLVTTEVTDLVASTLEADGAPTVLIGQDT
SWDAFSSVDIDNEQGGYEAGRHLCDLGYEEIGLILGSRALEESAHRRQGV
ERALSEAGIAVSDRHVAEGDYSQESGHSIVRAWAEQGRMPRALFCASDTM
AMGALLALNEAGYAVPDEVALVGFDDLPAAQYTIPPLTTVRQPVYEKGQA
AIDLLIDHIENAEPNPEHTELEPELVVRQSCGARQNP
>SRU_0269 recG, ATP-dependent DNA helicase RecG
MSEDFLQQDVRYVKGVGEKRADVWAEQHGVRTVHDLLRFYPRRYLDRTTV
TPVRQLQEGPDSVTVVGTVRSVNVVPGNNQKRLEIILEGEQGGRMKGTWF
QGVWWVRKAFDEGDRVAFHGTVEKYGRWHSMTHPDFDRLNDEGPLLDTGR
IVPLYPGGEAMSNVGLTSRTVRRVLYDLFKEHGLKLTETMPDWIMDGYDL
MEGRVALRAIHFPKTQQELSRARRRLKFEELFFIQLLLAQMHEQQEEVAG
PAFDDPGAYTREFVREVLPFELTGAQTRALREIIGDVQTGTQMNRLLQGD
VGSGKTVVAVAAMMHAYDSGYQSAFMAPTEILAEQHHANLQDYLQPLGLE
PRLLIGSQTKAEREAALQAVRSGASPVAVGTHALIQDEVAFDRLGLAVVD
EQHRFGVAQRAEMFEKGERPHMLLMTATPIPRSLALTLYGDLDVSKIDEM
PPGRKPVETRLRAEKRRGEVYAFLNDRLEQGEQAFVVYPLVEESEKMDLK
DAESGAQELQEKFPDYTVGLVHGQLSADDKDATMRRFKEGDIDLLVATTV
IEVGVDVPNATVMLVEHAERFGLSQLHQLRGRVGRSDQQSYCVLMASYKR
SQEAKQRLEAMARTNDGFEISETDLQIRGAGDFFGTRQSGMPDLKIADLT
EDDEILEVAREAAFALIEKDPHLRADEHERLRRRYQEDYAEHGLGFARVG
>SRU_2525 rfaY, RNA polymerase ECF-type sigma factor
MNKFRGCATARVMPDRDDEFVQLVRENDVRLRKICRVYADNTEAQRDLYQ
DILVELWRSFSSFERDAQPGTWLYRVALNTALSHDRSRAVRNEATLDADH
PVWTDGVSRPDKRLDRDEKLDRLYAAIDRLDDVDKALVMMYLDEKSYREM
GDVLGLSESHVGVKLHRVKNKLASWLEAPPA
>SRU_2234 rho, transcription termination factor Rho
MSNSMKISTLQDKKLDELREIARELDLTGYSDLRKQDLIYRILEAQAEGA
ASGEEPDLNETGPSSTPDNGAGETDRTSSDASQTRSSGKPDYMRRYDPNQ
TELRGMIKKAGVLEILPDGYGFLRSDEYSYQSSPDDIYVSPSQIKRFGLQ
EGDTVEGRVRPPKEGEKFFALIQVASINGCDPGELGERADFEFLTPIFPD
ERFTLEVEADSYGPRILDLFAPIGKGQRGLIVSPPKAGKTVLLQKIAHGI
ATNHPDTHLLTLLIDERPEEVTDMDRTVEGEVVASTFDEEPERHVEVADT
VLLKVRRLVESGQDVCVLLDSITRLARAHNAVTPEKGRTLSGGIEAGALR
GPKRFFGAARNVEESGSLTIIGTALIDTGSRMDQVIFEEFKGTGNMELVL
DREMADRRLYPAIDLILSGTRREEELLPKPMLKRVWVMRKILADMEPIEA
MEFLLDKMKDTADNEEFLEMMN
>SRU_1343 rnc, ribonuclease III
MSRRRMSESLPPGVQVDPAAIEQLVGRPVDDLSHYRRALTHRSLLRVHPA
RTFRSNERLEFLGDALLDVFVGEVLYDRFPEKDEGALTRLRARLVSERPL
ATYARGLGLGPHLLMSENAAEGDGRDNPSILADAFEAFVGAVYLDLGHEA
ARGFVQDRVLAPVDLEDVATRDDNYKSQLLEHLQALGRPQPTYHVVEEKG
PSHDKTFTVEVRVGDAAYERGTAGSKQDAEQQAARRTLDEMASDPPAS
>SRU_1528 rnr, ribonuclease R
MLAEMTAQQLVERDGRKYKTKATTRQHTGVLQCHDKGFGFVQATDQDEEF
FIREANMGEALHGDLVRVAVAARAPEDKKRECEVLEVVERRCTEVVGTFH
HRSDFAFVEPDDQRILQDVYVAPDAFSGAKDGEKVMVSIDRFDDRKASPE
GRILRVIGPSDDPNVRVLSLAMSMDVKADFPDEVEAEAESIPVKIPEDEI
ERRRDLRDKPVFTIDPVDAKDFDDAVHVEELDNGNYEVGVHIADVSHYVE
PDTAIDAEALERGTSVYLVDRTIPMLPEKLSNKVCSLRPHEDKLAFSILM
ELTTEGDVVDYEICETVIHSKERLTYDRAQDYIEGGYPDDKMAADVVQAN
RLAKTITRRRMQEGAIDFGSDEVNVILDDDGTPTNIVRKERLQANRLIEE
FMLLANRTVAKHIAAPEHVDRHRSNGTDEPLPFVYRVHDSPDSEEIQQLA
EYVRVFDHELPLTDGNARSSDLGALIDEVQGQPEEQVIVRAALRAMSKAE
YAVGNIGHYGLGFDYYSHFTSPIRRYPDLMVHRLLKRYAKGGSPADIEDL
AARCEHCSEQERNAEEAERESVKLKQVEYVKNHVGEEFDGVVSGVTKFGV
FVEITDLLVEGLVHVREMNDYYVYDESTYTLRGENNGTSYRPGDSVRVEV
ASASVEDREIDLLFVE
>SRU_1060 rpoA, DNA-directed RNA polymerase, alpha subunit
MPEGVHVEEVSDSEGQFVMGPLERGYGVTIGNALRRVLLSSLRGLAITAV
KIDGVQHEFSTIPGVTEDVADLILNLKEVRFKADEMQEGHLHLNLEGPGN
WTAADIDEATAEYDVLNPDQHVATLAEDAVVNVDLRVGYGRGYVPSEENK
REDDPIGVIAIDSIFTPIKNVNYEVKPTRVGQKIDYEELLLDVETDGSLT
PEEAITQGASILRDHVSFFIQLEEEPEPVVEEQEVDEEVKRIRELLAQPV
DELDLSVRSHNCLKAANIKTIGDLVRREEDEMLKFRNFGRKSLQELVEVL
DERGLQFGMDVEEYLEEKKAS
>SRU_1758 rpoB, DNA-directed RNA polymerase, beta subunit
MAHGPAPPDDRHGSPCFRGPTHGIRTRAVRRVGCFANAVYSRERYLQPMP
TFLNGDITTPGHLVDPDPRESFADIPEVWDYPDFLDVQLKTFHDFVQDDV
PPADREDVGLQAVFNEHFPIKDNRDRYTLEFVNYELDAPKHTVEECIAQG
LTYSIPLKATLRLTSKEEEGGEEAIEAIEQEVYLGTLPFMTDRGTFIVNG
AERVIVSQLHRSPGAFFEKEIHSNGTELFSARVIPFRGSWMEFSTDVRDV
LWAYVDRKKKVPVTTLLRALGFSSDEEIVKMFDLADAVDIGDEDEFEEHL
GRELATSVTIEKTIEIVDEDTGEVVDEEMEREVLLPAEHELEEGDWEELD
EYDVSRLYLVREDVEDEALDKSTLVETLQKDSSHTEEEALEVIYEKLRGS
EAPDLDSAREALERLFFNEDRYDLGDVGRHRMNARLDVDVDTDEKVLTKE
DVVGIVRELIRLQNGESTADDIDHLSNRRVKSVGEQLGSQFSLGLARMAR
TIKERMNLRDADKFTPKDLVNARTIESVINTFFGTNQLSQFMDQTNALAE
MTHKRRMSALGPGGLTRERAGFEVRDVHHTHYGRLCPIETPEGPNIGLML
SLCVHSTINDFGFLETPYRVVEDGRVTDRVEYLSAEEEDQATVAQANAPI
GDDGHFERDEVRCRHQGDFPIVEPEEVDYMDVAPNQIVSPSASLVPFLSH
NDANRALMGSNMQRQGVPLLRSDSPIVGTGLEGRVAKDSRSCVVAEGEGV
VEYVDAERLVVRYDEEQDKTDLTFGEPVQEYELTKFRRTNQGTCMNQKPI
VQAGDRVEEGEVLTDGFAMEKGELALGKNVLCAFMPWHGYNYEDAIVISE
RLVADDVYTSVHIEEFEHEVRDTKRGEEELTREIPNVSEEATKDLDERGI
VRVGAEITPGDIIVGKITPKGETDPTPEEKLLRAIFGDKAGDVKDASLKA
KPGMEGGVVIDTRLFSRRELDPASKKMEEKRLENIESDHERKLADLNERF
WEKFFALVEDATSAGLEDREGEVLLTEGADFEEDAFDEVDPSDLSTRAEF
TEDEELNDQISTLLRNYKSRRRDIEGTTKRQKHQVEMGDELPSGVVQMAK
VYVARKKKIEVGDKMAGRHGNKGVIAKIAPVEDMPFLDDGTPVDLVLNPL
GVPSRMNLGQIYETLLGWAGDRLGVKYATPIFDGASLEDVGDELEKAGLP
RDGKVQLYDGRTGEPFDEKTTVGQIYMMKLEHLVEDKMHARSIGPYSLIT
QQPLGGKAQFGGQRLGEMEVWALYAYGASNTLQEMLTFKSDDVEGRSEAY
ESIVKGENLPSPGVPESFNVLVRELQGLGLEVTLD
>SRU_1757 rpoC, DNA-directed RNA polymerase, beta' subunit
MPYGNSKEIETDFDSITISLASPEDILERSYGEVMKPETINYRSFKPEMG
GLFCEKIFGPVKDYECHCGKYKRIRYKGIICDRCGVEVTRKAVRRERMGH
ISLSVPVVHIWYFKTLPNKIGHLLGLKSKDLEKVIYYENYIVIQPGTAER
LGVEENQLLTEEEYYEILYQIRDDNNRLQDDNEEKFIAKIGGEAVETMLE
RLELDKLAQELRYQVRTETSQQRKSKALKRLDVVEAFREANEDGTNKPEW
MVMRVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIK
APEVILRNEKRMLQEAVDSLFDNSRKSNSVRGSSNRPLKSLSDMLKGKQG
RFRQNLLGKRVDYSGRSVIVSGPHLELHQCGLPKEMAVELFKPFIIRRLI
ERGIVKTVKSAKKYVDKKTEDVWDILEKVIQGRPVLLNRAPTLHRLGIQA
FQPVLTENKAIEIHPLVCPAYNADFDGDQMAVHVPLSHEACLESMVLMLS
SHNVRSPADGGPLAVPSQDMILGLYYITKAKSNQKGEGMRFANVQEVRQA
FDQDQVALHAKIQLRDPDGSGEMIDTTVGRVIFNETLPDTLDYVNEVLST
KNVRPVIARVLKQTGFEETADFLDAIKDMGFRRSTTSGMTFSLSDIIIPD
EKEELIEEANETVEEAEQNYSMGFITDNERYNQVIDVWTKTNNKVSEVLF
DALKEHKEGFNPIFTMADSGARGSQEQIRQLGGMRGLMAKPQKNIGEGGG
GGEILENPILSNFKEGLTVQEYFISTHGSRKGLADTALKTADAGYLTRRL
VDVSQSVTVTEHDCGTLRGINVGALKDNEEVVAPLSDRITGRVSVRDVYD
PHTDELIVEANELITDEIADDIAQTSIEEIEIRSVLTCEAERGVCTLCYG
QNLATGRMVEVGESVGVVAAQSIGEPGTQLTLRTFHTGGTATREVGESTI
QAKFAGTLEFENLRTVTYEDTDGPKEVVLSRQGEVRIMDTDGDRRELTSY
VVPYGAELLVDEGEDVEDGDVLASWDPYNSLILTEANGTVRFEDIIEDTT
YREETDEQTGHKEKVIVESRERTLTPAVIVETEDGEQREYNMPVDARIQV
DEGDEVQAGQTLAKMPRQAAQTSDITGGLPRVEELFEARTPDEPAVVSEI
DGIVSFGDQKRGSQEVIVTSRDGDMEKSYMVSLSKHMLVHEGDYVEAGDR
LCDGQIAPHDILSIKGPRAVQEHLLNEVQEVYRLQGVDIDDKHFEVVIRQ
MMKRVKITEPGDTNFLEEDQVDRQKMASINDDLYDKFVVKDPSDANVEIG
EVIGRRRLRELNSELKREDKPEIEVREARPAVGEPLLLGITKASLATDSM
ISAASFQETTKVLTNSAIRSRTDPLEGLKENVVAGHSIPAGTGQREYRDL
VVGSKSELEELQAAIGGDGESPSGDGAAGDGAPSEEDVEQIEASGSEN
>SRU_1949 rpoD, RNA polymerase sigma-70 factor
MEAHAAPTAPRSFPGTCRSHHHCHRSSPTTRQDHMQVSREQRMLDQYLQE
IGKIDLLEPEEEVELARRIEDGDEEALHKLCRANLRFVVSVAKKYQGQGL
SLADLINEGNYGLIKAAKRFDETRGFKFISYAVWWIRQAILQALAEQSRV
VRLPLNRIGTISKIRKASARLQQDLDRKPNIEELAEELEIDVQKVREAMK
HTSRHLSMDAPFNEEDDNSLLDVLPDEDNDSPDEEMLSESVKIDIERALS
ALHDREAEITRLYFGIGREHPLTLEEIGKRFDLTRERVRQIKEKALRKLR
QRHSKQDLQPHTD
>SRU_2499 rpoE, RNA polymerase sigma-70 factor, ECF subfamily
MGFRMQPTDEELVSAYLDESDEQAFRQLVERHQDRIFGYLMGMVKDRAVA
NDLFQETFERVIKAMHGERGSYDRQGQWLSWVMSIARNAAIDHTRKQKKW
TDVPQDEDDGRSFWDTLEDDSPYADEQLHRAEQREWLDEHIEQLAPEQKE
VLLLRQETDLTFREIAELQDVSINTALGRMRYALKNLRKMMEASDETALV
GTIDT
>SRU_1147 rpoN, RNA polymerase sigma-54 factor
MSSNVLELKQEQDLQQKLSPQQIQYIKLLQLDTFDLERRIEEELEENPLL
EEGLGEEEQREEDEIDATAEEMENELETEDDEEDFDVEDLLNNTDDMYGY
NASPGYQGDDEDRDRPMPADQSLPEQLQGQISFLNLDETDEIIADQIIGS
IDEDGYLKREIDSILDDILFNHGIEIEEEDVQKVLRQVQSLEPAGIAARD
LQECLLLQLRRMPEDVDGRDTAIAMLEDEYEAFTKKHFDKLQKRLDVDER
ELKTAFDLIRQRLDPKPGEGEFSEETNYITPDFSVRYVDGEFVITLNGRN
APDLHVSRHYRKMLEKLKAQKKSDDVDEVDEETEEFLKDKFSSAQWFIDS
INQRRHTMYLVMDAIVQLQEDFFRYGEGHLKPMILKDIAEIIDMDISTVS
RVVNGKYVQTEWGVYELKYFFSEGLETVDGEEVSNKEVKAELQRIVDAED
KTDPMSDQDLADALEEKGFKIARRTVSKYRKQLSIPVARLRREIVLSEEA
SSED
>SRU_1494 scpB, segregation and condensation protein B
MPDDASPESPEAPAHSPDRPAKANDHTLVEAAEAILFAADEPVSASRIAT
IVGDVTGRSEPSEDDVAAALDRLNTTYEEHDRAFEVKSWAGGYRMVTRAP
LSPYAKTFYVEEQETTLSRSLMETLAVIAYRQPVTRPEVDFVRGVNSDYA
IRKLLEMDLASVEGRAESVGRPLLYGTTDRFLEQFGLDALDDLPTLREVE
DLLDDPAFDDERAKLLQLDREEGISVDMLDAETGDSPNGDSPNQRPTE
>SRU_2757 sigW, RNA polymerase ECF-type sigma factor
MSHDAPDGTYARRVQDGDRSAFRMLVERYEGMVFDLAHQYTDGPEAAEDL
AQDVFLTAYHRIDDLQDPDRFASWLYGIALNRGRDYAKNVRRDTYPFSRS
EQEGTHIRDNGAAQDDQLVADERGDQLWNALDELAPTYATPFLLKYRNGL
TYKAMSKRLDVSVSALKVRVHRARKKLRTLLAPYHEKSRS
>SRU_0515 spo0J, spoOJ protein
MGKKSALGKGLNALLPEDQDEQASGDGEGSTDEAPEEQSQLYQFEDGTRL
LGRVAEVAVERIRPNPYQPRQEFEEGALDELAASIEQIGIIQPITVRALG
DGEFEIISGERRLRAARRAGMEHLPAFIREADSEEMLEMALVENVQREEL
NPIEIALGYQRLVEECDLTQEEVAERVSKSRATVSNFLRLLRLPPRIQAA
LRDKQVSMGHARALIAMDDDEAQVALLEETIAEDLSVREVERRARQWHED
EGAADSEAAEGADDTAVPETAPDRDDLQFEELRNRLRSRFSTQVQIQHRK
DGEGTIEISYYSEEDLNRLVELLASE
>SRU_1062 spoT, RelA/SpoT family protein
MIQASAVPQKSEIEIDPKYEERLEELLLCCRTHLPTVDENMIRRAFRLSY
WAHRNDWRESGEKYVSHPLRVATIVARDIGLDDTSVAAALLHDVVEDTEL
SLDLIRDEFGDTMATIIDGLTKIEGVFSSQKLGQAENVRKLMLSMASDLR
VILVKFADRLHNMRTIEALPKKKQLQKASETQELFAPLAHRFGLFKIKSE
LEDLSFKVLDPEAYTHIVDRLEEMAEQREAYIAGFIEPLAEHLEEEGFEF
DIKGRVKNVYSIHRKMERKNKPIDEIYDIFAIRVILQSGGRKGKEDCWRV
YSLVTDLYKPLPERFRDFISVPKSNGYQSLHTTVFGPGGRRVEVQVRTQE
MHEVAERGVAAHWKYKEGTENVDEEMERFLEWVRDLLENPEPEEATEFVK
EFRLNLYDEEIYVFTPQGDLLTLPQGATPVDFAFKVHTEVGMQCLGAKVN
GKMVPLSQELESGDQVEVITSEKQNPSPDWINFVVTHKARSRIRKWTNEE
RRKAVELGKEIWGKTKDQADLEISDQDLQEVAHELKFPDLQQLFYEIGKG
LYDPDELVDYIKGNTQTEEKTVEEFDEESLREQYEQFLDAAQETEKQALV
IDGEVQKDLAVNYASCCNPIPGDEVFGFVSKTGTVNIHRSNCRNASDLLV
NKADRILDVDWSHQKDVQFVAALRLMGEDRVGMVNDITTVISKNLKTNIR
SITIDTEDGIFSGTIMLHVSDLEHLQRLIERLKRIDGIQGVYRFKE
>SRU_0304 umuD, umuD protein
MTAARPARHTPRLRQPFFLTRVEAGFPSPASDYVETELDLAEHLIEHEAA
TYYLRVSGTSMTRAGIHDGDILVVDRAVEPADGDVVVAALDAELTVKRLR
TRDGRAFLVPESQHHDPIPVRDGQELVVWGVVQHVVHEVS