Gene list
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COG category: Transcription
Organism: Salinibacter ruber DSM 13855, DSM 13855; M31
Number of genes found: 123
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| Salinibacter ruber DSM 13855, DSM 13855; M31 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | SRU_0875 | putative DeoR-family transcriptional regulator | SubName: Full=Putative DeoR-family transcriptional regulator; | chromosome | CDS | 1118648 | 960 | - | 0.723958 |
| NA | SRU_0350 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 470962 | 525 | - | 0.575238 |
| NA | SRU_2244 | transcriptional regulator, AsnC family | SubName: Full=Transcriptional regulator, AsnC family; | chromosome | CDS | 2782893 | 339 | - | 0.625369 |
| NA | SRU_2789 | DNA-binding response regulator, LuxR family | SubName: Full=DNA-binding response regulator, LuxR family; | chromosome | CDS | 3449275 | 762 | - | 0.61811 |
| NA | SRU_2492 | PhoP3 response regulator | SubName: Full=PhoP3 response regulator; | chromosome | CDS | 3096971 | 741 | - | 0.662618 |
| NA | SRU_2773 | probable transcriptional regulator, TetR family | SubName: Full=Probable transcriptional regulator, TetR family; | chromosome | CDS | 3431807 | 633 | + | 0.660348 |
| NA | SRU_0046 | ATP-dependent RNA helicase | SubName: Full=ATP-dependent RNA helicase; | chromosome | CDS | 41983 | 1437 | + | 0.658316 |
| NA | SRU_0244 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 323040 | 651 | + | 0.634409 |
| NA | SRU_2786 | transcriptional regulator, TetR family protein | SubName: Full=Transcriptional regulator, TetR family protein; | chromosome | CDS | 3445313 | 690 | - | 0.647826 |
| NA | SRU_2471 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3074675 | 246 | + | 0.727642 |
| NA | SRU_0499 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 674024 | 717 | + | 0.682008 |
| NA | SRU_1015 | predicted transcription regulator, ArsR family | SubName: Full=Predicted transcription regulator, ArsR family; | chromosome | CDS | 1296037 | 357 | - | 0.64986 |
| NA | SRU_1283 | transcriptional regulator, putative | SubName: Full=Transcriptional regulator, putative; | chromosome | CDS | 1620264 | 414 | + | 0.618357 |
| NA | SRU_0785 | xylose repressor | SubName: Full=Xylose repressor; | chromosome | CDS | 997594 | 984 | - | 0.663618 |
| NA | SRU_0256 | (p)ppGpp 3-pyrophosphohydrolase | SubName: Full=(P)ppGpp 3-pyrophosphohydrolase; | chromosome | CDS | 342129 | 372 | + | 0.626344 |
| NA | SRU_2045 | iron dependent repressor, putative | SubName: Full=Iron dependent repressor, putative; | chromosome | CDS | 2531186 | 654 | + | 0.67737 |
| NA | SRU_0512 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 685033 | 411 | - | 0.647202 |
| NA | SRU_0252 | TcrA | SubName: Full=TcrA; | chromosome | CDS | 337039 | 471 | + | 0.624204 |
| NA | SRU_1391 | acetyltransferase | SubName: Full=Acetyltransferase; | chromosome | CDS | 1741557 | 552 | - | 0.681159 |
| NA | SRU_1175 | alkaline phosphatase synthesis transcriptional regulatory proteinphoP | SubName: Full=Alkaline phosphatase synthesis transcriptional regulatory proteinphoP; | chromosome | CDS | 1484028 | 762 | - | 0.639108 |
| NA | SRU_1823 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2255532 | 597 | - | 0.664992 |
| NA | SRU_2571 | transcriptional regulator, Sir2 family | RecName: Full=NAD-dependent protein deacylase; EC=3.5.1.-; AltName: Full=Regulatory protein SIR2 homolog; | chromosome | CDS | 3193614 | 759 | - | 0.70751 |
| NA | SRU_2462 | bacterial regulatory proteins, ArsR family | SubName: Full=Bacterial regulatory proteins, ArsR family; | chromosome | CDS | 3069051 | 339 | - | 0.666667 |
| NA | SRU_2138 | putative RNA polymerase sigma factor | SubName: Full=Putative RNA polymerase sigma factor; | chromosome | CDS | 2645672 | 555 | - | 0.627027 |
| NA | SRU_1512 | HTH-type transcriptional regulator celR | SubName: Full=HTH-type transcriptional regulator celR; | chromosome | CDS | 1881385 | 1041 | + | 0.626321 |
| NA | SRU_1977 | hypothetical transcriptional regulator, TetR family | SubName: Full=Hypothetical transcriptional regulator, TetR family; | chromosome | CDS | 2443976 | 639 | + | 0.655712 |
| NA | SRU_0861 | putative membrane protein | SubName: Full=Putative membrane protein; | chromosome | CDS | 1103901 | 1830 | + | 0.70765 |
| NA | SRU_0748 | rrf2 family protein (putative transcriptional regulator) | SubName: Full=Rrf2 family protein (Putative transcriptional regulator); | chromosome | CDS | 960190 | 648 | + | 0.682099 |
| NA | SRU_2762 | extracytoplasmic function alternative sigma factor | SubName: Full=Extracytoplasmic function alternative sigma factor; | chromosome | CDS | 3417405 | 579 | + | 0.611399 |
| NA | SRU_2563 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 3185351 | 903 | + | 0.684385 |
| NA | SRU_2855 | two-component system response regulator protein | SubName: Full=Two-component system response regulator protein; | chromosome | CDS | 3534595 | 969 | - | 0.670795 |
| NA | SRU_0357 | transcriptional regulator, LacI family | SubName: Full=Transcriptional regulator, LacI family; | chromosome | CDS | 482972 | 1140 | + | 0.653509 |
| NA | SRU_1357 | transcriptional regulator, putative | SubName: Full=Transcriptional regulator, putative; | chromosome | CDS | 1705741 | 942 | - | 0.649682 |
| NA | SRU_0528 | putative transcriptional regulator | RecName: Full=Type III pantothenate kinase; EC=2.7.1.33; AltName: Full=PanK-III; AltName: Full=Pantothenic acid kinase; | chromosome | CDS | 702266 | 771 | - | 0.722438 |
| NA | SRU_0126 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 165130 | 1194 | - | 0.661642 |
| NA | SRU_1867 | putative transcription regulator protein | SubName: Full=Putative transcription regulator protein; | chromosome | CDS | 2309107 | 405 | - | 0.634568 |
| NA | SRU_2449 | conserved domain protein | SubName: Full=Conserved domain protein; | chromosome | CDS | 3060665 | 228 | - | 0.587719 |
| NA | SRU_0928 | TetR family transcriptional regulator, putative | SubName: Full=TetR family transcriptional regulator, putative; | chromosome | CDS | 1190609 | 702 | - | 0.652422 |
| NA | SRU_1164 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1465450 | 789 | + | 0.602028 |
| NA | SRU_0176 | possible sigma-70 factor, ECF subfamily, putative | SubName: Full=Possible sigma-70 factor, ECF subfamily, putative; | chromosome | CDS | 245884 | 585 | - | 0.68718 |
| NA | SRU_2319 | diamine acetyltransferase 2 | SubName: Full=Diamine acetyltransferase 2; EC=2.3.1.57; | chromosome | CDS | 2889084 | 510 | - | 0.676471 |
| NA | SRU_0677 | response regulator receiver domain protein | SubName: Full=Response regulator receiver domain protein; | chromosome | CDS | 882212 | 654 | - | 0.646789 |
| NA | SRU_1707 | putative ECF-subfamily sigma factor | SubName: Full=Putative ECF-subfamily sigma factor; | chromosome | CDS | 2116164 | 555 | + | 0.677477 |
| NA | SRU_0298 | transcriptional regulator, BlaI/MecI/CopY family | SubName: Full=Transcriptional regulator, BlaI/MecI/CopY family; | chromosome | CDS | 394641 | 435 | - | 0.641379 |
| NA | SRU_1519 | transcriptional regulator, GntR family protein | SubName: Full=Transcriptional regulator, GntR family protein; | chromosome | CDS | 1888812 | 981 | + | 0.609582 |
| NA | SRU_0551 | LexA repressor, putative | SubName: Full=LexA repressor, putative; EC=3.4.21.88; | chromosome | CDS | 726717 | 1017 | - | 0.632252 |
| NA | SRU_0332 | TENA/THI-4 family | SubName: Full=TENA/THI-4 family; | chromosome | CDS | 442680 | 714 | - | 0.680672 |
| NA | SRU_2249 | RNA polymerase ECF-type sigma factor, putative | SubName: Full=RNA polymerase ECF-type sigma factor, putative; | chromosome | CDS | 2788334 | 651 | + | 0.648233 |
| NA | SRU_1934 | RNA polymerase sigma-H factor, putative | SubName: Full=RNA polymerase sigma-H factor, putative; | chromosome | CDS | 2392349 | 576 | + | 0.657986 |
| NA | SRU_1455 | protein kinase domain | SubName: Full=Protein kinase domain; | chromosome | CDS | 1810998 | 1950 | - | 0.717949 |
| NA | SRU_0138 | transcriptional regulatory protein, putative | SubName: Full=Transcriptional regulatory protein, putative; | chromosome | CDS | 184771 | 666 | + | 0.62012 |
| NA | SRU_1837 | acetyltransferase, putative | SubName: Full=Acetyltransferase, putative; | chromosome | CDS | 2271618 | 435 | - | 0.687356 |
| NA | SRU_2788 | two-component response regulator | SubName: Full=Two-component response regulator; | chromosome | CDS | 3447954 | 690 | - | 0.633333 |
| NA | SRU_1472 | transcriptional regulator, putative | SubName: Full=Transcriptional regulator, putative; | chromosome | CDS | 1835926 | 786 | + | 0.648855 |
| NA | SRU_1778 | N utilization substance protein A | SubName: Full=N utilization substance protein A; | chromosome | CDS | 2197687 | 1641 | - | 0.642901 |
| NA | SRU_2746 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3398112 | 843 | - | 0.690391 |
| NA | SRU_0112 | transcriptional regulator, ArsR family protein | SubName: Full=Transcriptional regulator, ArsR family protein; | chromosome | CDS | 144049 | 447 | + | 0.677852 |
| NA | SRU_1193 | transcriptional regulator, BlaI/MecI/CopY family | SubName: Full=Transcriptional regulator, BlaI/MecI/CopY family; | chromosome | CDS | 1505268 | 414 | - | 0.623188 |
| NA | SRU_2537 | transcriptional regulator, ArsR family, putative | SubName: Full=Transcriptional regulator, ArsR family, putative; | chromosome | CDS | 3151587 | 312 | - | 0.717949 |
| NA | SRU_0029 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 28463 | 366 | - | 0.614754 |
| NA | SRU_0966 | 'Cold-shock' DNA-binding domain, putative | SubName: Full=Cold-shock DNA-binding domain, putative; | chromosome | CDS | 1233640 | 210 | + | 0.566667 |
| NA | SRU_2327 | LytTr DNA-binding domain family | SubName: Full=LytTr DNA-binding domain family; | chromosome | CDS | 2900944 | 837 | + | 0.688172 |
| NA | SRU_2726 | LytTr DNA-binding domain family | SubName: Full=LytTr DNA-binding domain family; | chromosome | CDS | 3370494 | 753 | + | 0.689243 |
| NA | SRU_2340 | transcription termination factor rho | RecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; | chromosome | CDS | 2912522 | 1122 | - | 0.654189 |
| NA | SRU_2581 | RNA polymerase sigma-28 factor | SubName: Full=RNA polymerase sigma-28 factor; | chromosome | CDS | 3206361 | 747 | - | 0.645248 |
| NA | SRU_0316 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | chromosome | CDS | 424642 | 810 | + | 0.671605 |
| NA | SRU_0234 | transcriptional regulator, AbrB family protein | SubName: Full=Transcriptional regulator, AbrB family protein; | chromosome | CDS | 312355 | 297 | + | 0.606061 |
| NA | SRU_0297 | peptidase, S41 family | SubName: Full=Peptidase, S41 family; | chromosome | CDS | 391125 | 3486 | - | 0.68187 |
| NA | SRU_2830 | response regulator receiver domain protein | SubName: Full=Response regulator receiver domain protein; | chromosome | CDS | 3496425 | 744 | + | 0.694892 |
| NA | SRU_2132 | HD domain protein | SubName: Full=HD domain protein; | chromosome | CDS | 2636765 | 846 | + | 0.700946 |
| NA | SRU_2677 | acetyltransferase, GNAT family | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 3315167 | 570 | - | 0.673684 |
| NA | SRU_0477 | transcriptional regulator, TetR family protein | SubName: Full=Transcriptional regulator, TetR family protein; | chromosome | CDS | 647213 | 915 | - | 0.665574 |
| NA | SRU_0630 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 829009 | 690 | - | 0.582609 |
| NA | SRU_1632 | PspC domain family | SubName: Full=PspC domain family; | chromosome | CDS | 2027883 | 672 | + | 0.644345 |
| NA | SRU_2547 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 3164671 | 468 | + | 0.666667 |
| NA | SRU_0004 | RNA polymerase sigma-70 factor, putative | SubName: Full=RNA polymerase sigma-70 factor, putative; | chromosome | CDS | 4174 | 636 | - | 0.589623 |
| NA | SRU_0749 | response regulator | SubName: Full=Response regulator; | chromosome | CDS | 960869 | 747 | - | 0.676037 |
| NA | SRU_0384 | putative AsnC-family transcriptional regulator | SubName: Full=Putative AsnC-family transcriptional regulator; | chromosome | CDS | 525246 | 498 | + | 0.634538 |
| NA | SRU_1563 | putative cold shock-like protein cspG | SubName: Full=Putative cold shock-like protein cspG; | chromosome | CDS | 1947777 | 492 | - | 0.615854 |
| NA | SRU_0258 | alginate biosynthesis regulatory protein | SubName: Full=Alginate biosynthesis regulatory protein; | chromosome | CDS | 344731 | 759 | - | 0.636364 |
| NA | SRU_0187 | transcription regulator | SubName: Full=Transcription regulator; | chromosome | CDS | 255072 | 141 | + | 0.468085 |
| NA | SRU_2798 | acetyltransferase, possible | SubName: Full=Acetyltransferase, possible; | chromosome | CDS | 3455937 | 681 | - | 0.668135 |
| NA | SRU_1208 | transcriptional regulator, TetR family protein | SubName: Full=Transcriptional regulator, TetR family protein; | chromosome | CDS | 1520060 | 624 | + | 0.645833 |
| NA | SRU_0202 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 276522 | 405 | + | 0.602469 |
| NA | SRU_0306 | probable RNA-biniding protein | SubName: Full=Probable RNA-biniding protein; | chromosome | CDS | 408911 | 1647 | + | 0.712811 |
| NA | SRU_1718 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2126682 | 522 | + | 0.565134 |
| NA | SRU_1727 | conserved domain protein | SubName: Full=Conserved domain protein; | chromosome | CDS | 2136067 | 216 | + | 0.578704 |
| NA | SRU_2286 | transcriptional regulator, TetR family protein | SubName: Full=Transcriptional regulator, TetR family protein; | chromosome | CDS | 2842512 | 600 | - | 0.645 |
| NA | SRU_0495 | conserved hypothetical protein | RecName: Full=UPF0301 protein SRU_0495; | chromosome | CDS | 670568 | 567 | + | 0.686067 |
| NA | SRU_2797 | thioesterase domain, putative subfamily | SubName: Full=Thioesterase domain, putative subfamily; | chromosome | CDS | 3455382 | 552 | + | 0.650362 |
| NA | SRU_0082 | HTH-type transcriptional repressor Bm3R1, putative | SubName: Full=HTH-type transcriptional repressor Bm3R1, putative; | chromosome | CDS | 97174 | 648 | + | 0.641975 |
| algR | SRU_0416 | two-component system, regulatory protein | SubName: Full=Two-component system, regulatory protein; | chromosome | CDS | 561614 | 741 | + | 0.700405 |
| cspa | SRU_2091 | conserved domain protein | SubName: Full=Conserved domain protein; | chromosome | CDS | 2588205 | 333 | + | 0.606607 |
| drrA | SRU_2292 | response regulator DrrA | SubName: Full=Response regulator DrrA; | chromosome | CDS | 2850392 | 711 | + | 0.59775 |
| drrA | SRU_0574 | response regulator DrrA | SubName: Full=Response regulator DrrA; | chromosome | CDS | 756163 | 714 | + | 0.598039 |
| drrA | SRU_2488 | response regulator DrrA | SubName: Full=Response regulator DrrA; | chromosome | CDS | 3092596 | 738 | - | 0.663957 |
| drrA | SRU_2491 | response regulator DrrA | SubName: Full=Response regulator DrrA; | chromosome | CDS | 3096262 | 681 | + | 0.61674 |
| greA | SRU_1424 | transcription elongation factor GreA | RecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; | chromosome | CDS | 1778729 | 495 | - | 0.614141 |
| hrcA | SRU_2353 | heat-inducible transcription repressor HrcA | SubName: Full=Heat-inducible transcription repressor HrcA; | chromosome | CDS | 2926678 | 1203 | - | 0.653367 |
| lexA | SRU_1177 | LexA repressor | RecName: Full=LexA repressor; EC=3.4.21.88; | chromosome | CDS | 1486777 | 651 | + | 0.619048 |
| mfd | SRU_0063 | transcription-repair coupling factor | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 61566 | 3429 | - | 0.673083 |
| nusB | SRU_0015 | transcription antitermination factor NusB | RecName: Full=N utilization substance protein B homolog; Short=Protein NusB; | chromosome | CDS | 15916 | 483 | + | 0.625259 |
| nusG | SRU_1763 | transcription termination/antitermination factor NusG | RecName: Full=Transcription termination/antitermination protein NusG; | chromosome | CDS | 2180393 | 558 | - | 0.573477 |
| oxyR | SRU_2406 | redox-sensitive transcriptional activator OxyR | SubName: Full=Redox-sensitive transcriptional activator OxyR; | chromosome | CDS | 3001124 | 909 | + | 0.717272 |
| pilR | SRU_1381 | two-component system regulatory protein | SubName: Full=Two-component system regulatory protein; | chromosome | CDS | 1731355 | 1524 | - | 0.701444 |
| rbsR | SRU_2839 | ribose operon repressor | SubName: Full=Ribose operon repressor; | chromosome | CDS | 3508737 | 996 | + | 0.639558 |
| rbsR | SRU_0369 | ribose operon repressor | SubName: Full=Ribose operon repressor; | chromosome | CDS | 508116 | 1014 | + | 0.677515 |
| recG | SRU_0269 | ATP-dependent DNA helicase RecG | SubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; | chromosome | CDS | 361774 | 2103 | - | 0.685687 |
| rfaY | SRU_2525 | RNA polymerase ECF-type sigma factor | SubName: Full=RNA polymerase ECF-type sigma factor; | chromosome | CDS | 3138041 | 546 | + | 0.613553 |
| rho | SRU_2234 | transcription termination factor Rho | RecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; | chromosome | CDS | 2769096 | 1419 | + | 0.650458 |
| rnc | SRU_1343 | ribonuclease III | RecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; | chromosome | CDS | 1690092 | 747 | - | 0.690763 |
| rnr | SRU_1528 | ribonuclease R | RecName: Full=Ribonuclease R; Short=RNase R; EC=3.1.13.1; | chromosome | CDS | 1903348 | 2001 | + | 0.648676 |
| rpoA | SRU_1060 | DNA-directed RNA polymerase, alpha subunit | RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; | chromosome | CDS | 1334278 | 966 | + | 0.622153 |
| rpoB | SRU_1758 | DNA-directed RNA polymerase, beta subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 2173447 | 4008 | - | 0.643962 |
| rpoC | SRU_1757 | DNA-directed RNA polymerase, beta' subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 2168989 | 4347 | - | 0.642282 |
| rpoD | SRU_1949 | RNA polymerase sigma-70 factor | SubName: Full=RNA polymerase sigma-70 factor; | chromosome | CDS | 2411767 | 942 | + | 0.629512 |
| rpoE | SRU_2499 | RNA polymerase sigma-70 factor, ECF subfamily | SubName: Full=RNA polymerase sigma-70 factor, ECF subfamily; | chromosome | CDS | 3104895 | 618 | - | 0.645631 |
| rpoN | SRU_1147 | RNA polymerase sigma-54 factor | SubName: Full=RNA polymerase sigma-54 factor; | chromosome | CDS | 1443048 | 1515 | + | 0.614521 |
| scpB | SRU_1494 | segregation and condensation protein B | SubName: Full=Segregation and condensation protein B; | chromosome | CDS | 1860911 | 747 | + | 0.668005 |
| sigW | SRU_2757 | RNA polymerase ECF-type sigma factor | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 3412337 | 573 | + | 0.640489 |
| spo0J | SRU_0515 | spoOJ protein | SubName: Full=SpoOJ protein; | chromosome | CDS | 689005 | 981 | + | 0.666667 |
| spoT | SRU_1062 | RelA/SpoT family protein | SubName: Full=RelA/SpoT family protein; EC=3.1.7.2; | chromosome | CDS | 1336119 | 2241 | + | 0.615797 |
| umuD | SRU_0304 | umuD protein | SubName: Full=UmuD protein; EC=3.4.21.-; | chromosome | CDS | 406996 | 423 | + | 0.704492 |
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