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2024-04-28 23:19:10

Gene list

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COG category: Transcription
Organism: Salinibacter ruber DSM 13855, DSM 13855; M31

Number of genes found: 123

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Salinibacter ruber DSM 13855, DSM 13855; M31
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA SRU_2855 two-component system response regulator proteinchromosome CDS3534595 969 - 0.670795
NA SRU_0512 conserved hypothetical proteinchromosome CDS685033 411 - 0.647202
NA SRU_0298 transcriptional regulator, BlaI/MecI/CopY familychromosome CDS394641 435 - 0.641379
NA SRU_1391 acetyltransferasechromosome CDS1741557 552 - 0.681159
NA SRU_0029 conserved hypothetical proteinchromosome CDS28463 366 - 0.614754
NA SRU_0306 probable RNA-biniding proteinchromosome CDS408911 1647 + 0.712811
NA SRU_0785 xylose repressorchromosome CDS997594 984 - 0.663618
NA SRU_2327 LytTr DNA-binding domain familychromosome CDS2900944 837 + 0.688172
NA SRU_1455 protein kinase domainchromosome CDS1810998 1950 - 0.717949
NA SRU_1193 transcriptional regulator, BlaI/MecI/CopY familychromosome CDS1505268 414 - 0.623188
NA SRU_1164 conserved hypothetical proteinchromosome CDS1465450 789 + 0.602028
NA SRU_2319 diamine acetyltransferase 2chromosome CDS2889084 510 - 0.676471
NA SRU_2492 PhoP3 response regulatorchromosome CDS3096971 741 - 0.662618
NA SRU_0861 putative membrane proteinchromosome CDS1103901 1830 + 0.70765
NA SRU_2249 RNA polymerase ECF-type sigma factor, putativechromosome CDS2788334 651 + 0.648233
NA SRU_1727 conserved domain proteinchromosome CDS2136067 216 + 0.578704
NA SRU_0138 transcriptional regulatory protein, putativechromosome CDS184771 666 + 0.62012
NA SRU_2244 transcriptional regulator, AsnC familychromosome CDS2782893 339 - 0.625369
NA SRU_2797 thioesterase domain, putative subfamilychromosome CDS3455382 552 + 0.650362
NA SRU_2537 transcriptional regulator, ArsR family, putativechromosome CDS3151587 312 - 0.717949
NA SRU_0316 transcriptional regulator, GntR familychromosome CDS424642 810 + 0.671605
NA SRU_1977 hypothetical transcriptional regulator, TetR familychromosome CDS2443976 639 + 0.655712
NA SRU_0252 TcrAchromosome CDS337039 471 + 0.624204
NA SRU_2773 probable transcriptional regulator, TetR familychromosome CDS3431807 633 + 0.660348
NA SRU_2788 two-component response regulatorchromosome CDS3447954 690 - 0.633333
NA SRU_0244 conserved hypothetical proteinchromosome CDS323040 651 + 0.634409
NA SRU_0202 hypothetical proteinchromosome CDS276522 405 + 0.602469
NA SRU_2132 HD domain proteinchromosome CDS2636765 846 + 0.700946
NA SRU_1823 conserved hypothetical proteinchromosome CDS2255532 597 - 0.664992
NA SRU_0112 transcriptional regulator, ArsR family proteinchromosome CDS144049 447 + 0.677852
NA SRU_0499 hypothetical proteinchromosome CDS674024 717 + 0.682008
NA SRU_0046 ATP-dependent RNA helicasechromosome CDS41983 1437 + 0.658316
NA SRU_2571 transcriptional regulator, Sir2 familychromosome CDS3193614 759 - 0.70751
NA SRU_1837 acetyltransferase, putativechromosome CDS2271618 435 - 0.687356
NA SRU_0551 LexA repressor, putativechromosome CDS726717 1017 - 0.632252
NA SRU_1707 putative ECF-subfamily sigma factorchromosome CDS2116164 555 + 0.677477
NA SRU_1512 HTH-type transcriptional regulator celRchromosome CDS1881385 1041 + 0.626321
NA SRU_0677 response regulator receiver domain proteinchromosome CDS882212 654 - 0.646789
NA SRU_2726 LytTr DNA-binding domain familychromosome CDS3370494 753 + 0.689243
NA SRU_1867 putative transcription regulator proteinchromosome CDS2309107 405 - 0.634568
NA SRU_0350 hypothetical proteinchromosome CDS470962 525 - 0.575238
NA SRU_1632 PspC domain familychromosome CDS2027883 672 + 0.644345
NA SRU_1357 transcriptional regulator, putativechromosome CDS1705741 942 - 0.649682
NA SRU_2449 conserved domain proteinchromosome CDS3060665 228 - 0.587719
NA SRU_0126 hypothetical proteinchromosome CDS165130 1194 - 0.661642
NA SRU_1778 N utilization substance protein Achromosome CDS2197687 1641 - 0.642901
NA SRU_0176 possible sigma-70 factor, ECF subfamily, putativechromosome CDS245884 585 - 0.68718
NA SRU_1472 transcriptional regulator, putativechromosome CDS1835926 786 + 0.648855
NA SRU_2138 putative RNA polymerase sigma factorchromosome CDS2645672 555 - 0.627027
NA SRU_1563 putative cold shock-like protein cspGchromosome CDS1947777 492 - 0.615854
NA SRU_0966 'Cold-shock' DNA-binding domain, putativechromosome CDS1233640 210 + 0.566667
NA SRU_2677 acetyltransferase, GNAT familychromosome CDS3315167 570 - 0.673684
NA SRU_0297 peptidase, S41 familychromosome CDS391125 3486 - 0.68187
NA SRU_2762 extracytoplasmic function alternative sigma factorchromosome CDS3417405 579 + 0.611399
NA SRU_2462 bacterial regulatory proteins, ArsR familychromosome CDS3069051 339 - 0.666667
NA SRU_0384 putative AsnC-family transcriptional regulatorchromosome CDS525246 498 + 0.634538
NA SRU_2798 acetyltransferase, possiblechromosome CDS3455937 681 - 0.668135
NA SRU_1175 alkaline phosphatase synthesis transcriptional regulatory proteinphoPchromosome CDS1484028 762 - 0.639108
NA SRU_2045 iron dependent repressor, putativechromosome CDS2531186 654 + 0.67737
NA SRU_2746 hypothetical proteinchromosome CDS3398112 843 - 0.690391
NA SRU_0477 transcriptional regulator, TetR family proteinchromosome CDS647213 915 - 0.665574
NA SRU_0187 transcription regulatorchromosome CDS255072 141 + 0.468085
NA SRU_0357 transcriptional regulator, LacI familychromosome CDS482972 1140 + 0.653509
NA SRU_1283 transcriptional regulator, putativechromosome CDS1620264 414 + 0.618357
NA SRU_2547 conserved hypothetical proteinchromosome CDS3164671 468 + 0.666667
NA SRU_2830 response regulator receiver domain proteinchromosome CDS3496425 744 + 0.694892
NA SRU_1208 transcriptional regulator, TetR family proteinchromosome CDS1520060 624 + 0.645833
NA SRU_2581 RNA polymerase sigma-28 factorchromosome CDS3206361 747 - 0.645248
NA SRU_0234 transcriptional regulator, AbrB family proteinchromosome CDS312355 297 + 0.606061
NA SRU_1519 transcriptional regulator, GntR family proteinchromosome CDS1888812 981 + 0.609582
NA SRU_0749 response regulatorchromosome CDS960869 747 - 0.676037
NA SRU_0928 TetR family transcriptional regulator, putativechromosome CDS1190609 702 - 0.652422
NA SRU_2340 transcription termination factor rhochromosome CDS2912522 1122 - 0.654189
NA SRU_2471 hypothetical proteinchromosome CDS3074675 246 + 0.727642
NA SRU_0495 conserved hypothetical proteinchromosome CDS670568 567 + 0.686067
NA SRU_0332 TENA/THI-4 familychromosome CDS442680 714 - 0.680672
NA SRU_1934 RNA polymerase sigma-H factor, putativechromosome CDS2392349 576 + 0.657986
NA SRU_0258 alginate biosynthesis regulatory proteinchromosome CDS344731 759 - 0.636364
NA SRU_1015 predicted transcription regulator, ArsR familychromosome CDS1296037 357 - 0.64986
NA SRU_2286 transcriptional regulator, TetR family proteinchromosome CDS2842512 600 - 0.645
NA SRU_2789 DNA-binding response regulator, LuxR familychromosome CDS3449275 762 - 0.61811
NA SRU_0875 putative DeoR-family transcriptional regulatorchromosome CDS1118648 960 - 0.723958
NA SRU_0630 putative transcriptional regulatorchromosome CDS829009 690 - 0.582609
NA SRU_0256 (p)ppGpp 3-pyrophosphohydrolasechromosome CDS342129 372 + 0.626344
NA SRU_0748 rrf2 family protein (putative transcriptional regulator)chromosome CDS960190 648 + 0.682099
NA SRU_0528 putative transcriptional regulatorchromosome CDS702266 771 - 0.722438
NA SRU_1718 hypothetical proteinchromosome CDS2126682 522 + 0.565134
NA SRU_0004 RNA polymerase sigma-70 factor, putativechromosome CDS4174 636 - 0.589623
NA SRU_2786 transcriptional regulator, TetR family proteinchromosome CDS3445313 690 - 0.647826
NA SRU_2563 transcriptional regulator, LysR familychromosome CDS3185351 903 + 0.684385
NA SRU_0082 HTH-type transcriptional repressor Bm3R1, putativechromosome CDS97174 648 + 0.641975
algR SRU_0416 two-component system, regulatory proteinchromosome CDS561614 741 + 0.700405
cspa SRU_2091 conserved domain proteinchromosome CDS2588205 333 + 0.606607
drrA SRU_2292 response regulator DrrAchromosome CDS2850392 711 + 0.59775
drrA SRU_2491 response regulator DrrAchromosome CDS3096262 681 + 0.61674
drrA SRU_2488 response regulator DrrAchromosome CDS3092596 738 - 0.663957
drrA SRU_0574 response regulator DrrAchromosome CDS756163 714 + 0.598039
greA SRU_1424 transcription elongation factor GreAchromosome CDS1778729 495 - 0.614141
hrcA SRU_2353 heat-inducible transcription repressor HrcAchromosome CDS2926678 1203 - 0.653367
lexA SRU_1177 LexA repressorchromosome CDS1486777 651 + 0.619048
mfd SRU_0063 transcription-repair coupling factorchromosome CDS61566 3429 - 0.673083
nusB SRU_0015 transcription antitermination factor NusBchromosome CDS15916 483 + 0.625259
nusG SRU_1763 transcription termination/antitermination factor NusGchromosome CDS2180393 558 - 0.573477
oxyR SRU_2406 redox-sensitive transcriptional activator OxyRchromosome CDS3001124 909 + 0.717272
pilR SRU_1381 two-component system regulatory proteinchromosome CDS1731355 1524 - 0.701444
rbsR SRU_0369 ribose operon repressorchromosome CDS508116 1014 + 0.677515
rbsR SRU_2839 ribose operon repressorchromosome CDS3508737 996 + 0.639558
recG SRU_0269 ATP-dependent DNA helicase RecGchromosome CDS361774 2103 - 0.685687
rfaY SRU_2525 RNA polymerase ECF-type sigma factorchromosome CDS3138041 546 + 0.613553
rho SRU_2234 transcription termination factor Rhochromosome CDS2769096 1419 + 0.650458
rnc SRU_1343 ribonuclease IIIchromosome CDS1690092 747 - 0.690763
rnr SRU_1528 ribonuclease Rchromosome CDS1903348 2001 + 0.648676
rpoA SRU_1060 DNA-directed RNA polymerase, alpha subunitchromosome CDS1334278 966 + 0.622153
rpoB SRU_1758 DNA-directed RNA polymerase, beta subunitchromosome CDS2173447 4008 - 0.643962
rpoC SRU_1757 DNA-directed RNA polymerase, beta' subunitchromosome CDS2168989 4347 - 0.642282
rpoD SRU_1949 RNA polymerase sigma-70 factorchromosome CDS2411767 942 + 0.629512
rpoE SRU_2499 RNA polymerase sigma-70 factor, ECF subfamilychromosome CDS3104895 618 - 0.645631
rpoN SRU_1147 RNA polymerase sigma-54 factorchromosome CDS1443048 1515 + 0.614521
scpB SRU_1494 segregation and condensation protein Bchromosome CDS1860911 747 + 0.668005
sigW SRU_2757 RNA polymerase ECF-type sigma factorchromosome CDS3412337 573 + 0.640489
spo0J SRU_0515 spoOJ proteinchromosome CDS689005 981 + 0.666667
spoT SRU_1062 RelA/SpoT family proteinchromosome CDS1336119 2241 + 0.615797
umuD SRU_0304 umuD proteinchromosome CDS406996 423 + 0.704492