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# Thiomicrospira denitrificans ATCC 33889, ATCC 33889

>Tmden_1748 NusA antitermination factor
MEKILDIVEAIANEKGLKSDKVKEALKAAFIQTAKRIINSKFAFEAVINT
QTKTIDIIQTITVVSDSDERLKDEEIAPAYISITEAREYDDQVELDDQLQ
IPHDLEEYGRTAASQLHREIEYHIQRVVEDEIFNKYKSKIGSLVNGRVTR
VDNQNSTYIEIDEIRAVLPIKNRIKGEIFKVGDHLKAVVRRVDMNKENGI
QIELSRTSPKFLEELLALEVPEISDGTVIVERSARIPGERAKVALFSTHP
QVDAVGATVGVKGVRINAVSQELIGENIDCIEYTTIPELFISRIMSPAII
SNVEILKDENGEAQKAIITLPTDQKSKAIGKNGINIRLASMLSGLNIELV
ESDVKVAQMSDMQDNKEQKEGVDALKALFN
>Tmden_1767 DEAD/DEAH box helicase-like
MQENAQTQTEEKLITFDDLGLKKEILRSVKDAGFTVPSPIQAAAIPFILA
GRDIVGQAHTGTGKTAAFGLPALNNINPNDGVGILVITPTRELATQVSDE
LFKYGRNIGARTVTVYGGSSYNRQIDLIQRGASVVVATPGRLLDILKKNL
LKDFAPSIVVLDEADEMLDMGFLDDINEIFSYLPSNRQTLLFSATMPKPI
KLLAERILDNPEFISITKGETTNTDINQEYYVIEESERDDAIIRLMDAEA
CQKSIVFCRTKSEVDRLSNVLSSAGYLANGLHGDMEQRQRETVIKGFKNN
GVKVLVATDVAARGIHVDNISHVFNYHIPFDPESYVHRIGRTGRAGTKGK
AITLLTPLEFKELQRIKTKVGTTMTHAFVPSKNDLRAINLKSIATSIEEH
NIYDEAHQILDMLKEDIDEPTIMFKLVSMILDRQAIQGPNSIGIPAEKLA
AILERADKRRDSKGGRGNFRGNRSARPSGDRNRSGSGDRNRSSSSSDRPR
SSEGGDRNARPSGGGYRGTSSTGERSRPSGDRNRTSRSRD
>Tmden_0258 two component transcriptional regulator, winged helix family
MRVLLLEDEFSLRISIKEFLEDIDYSVDDFADGLEAHDAIYAKSYDLLLL
DINVPSMSGFELLQSIRKDGIKIPAIFLTSMTELQGLKEGYRKGCCDYIR
KPFDLLELELRIKQAIRSYYLDNSDMVELGEGFVYDMLKGKLTKDDKEIV
LRKIEKDLLEMLIKNKNSVVSMQMFQDEVWGDYVEPSAIRVQINNLKQKL
SETIIHNRRGLGYIIER
>Tmden_0543 Exoribonuclease II
MMKSLLIKLTHGFDEQDISADELKFVNDFLAKEYITKDGTLYKFNSKYRA
GTLGLVQNGTAYLHVIGEYVRDLFIDDVESSKAKEGDLVIAQRLLGKRGS
PSAKIVEVLGRAQTYSVAYIITKDAKKSLVDLKTDFPIGVEITQDELESY
KDGDVFKINNQDFTIMELLGNIKDPLVDEKIVLAHYNKHDAFEPEVLEIA
SSFTEVDASKHPLRVDLRKLPFCTIDPVTAKDFDDAIYYDEKESTLYVAI
ADVSYYVEPFGAIDNEAIYRSFSIYLPHRSIPMLPRELSETLCSLQPHVD
RLAYVFEMKLDLETLEVSSSKVYEAIIHSQRRFNYEEVDELFEGNLEPQN
PSEIEIFEYIHKLRVITDALKAKRLKIGYNFRSNELEMFLDKNSNISSTS
YAEETPSHALIEDCMLLANKEAAKRFTRGIFRIHEPPNQMKLQNLYQELA
GIGMFINIKKSIKETITEIQKQAAEMNLVSEVDTLIIQSQMQARYAPINA
GHFGLGFDEYTHFTSPIRRYSDLIVHRLLKAISNHDTTEGSYVLRNIESL
CMSVSEKEREASTIEVEFMARKFARWAAENIDELFSARVTSTDPFFKAEL
HDTISGARFYITHNLDAALFDDVKVRIDKVDIAKAKIYASITEIVEKEI
>Tmden_0955 transcriptional regulator, XRE family
MYLKEFREKLNLTQNELSSILDIAQTTIARYENDKVKPTSTVLLKYINEL
NANPNFLFLGIEPHLLNNLPKLDSSNMDLLNDITLMMSQEHLREKLNKIL
IDEIIQRFEKQNDSLVAKLLEIVKMDDPVKTRPFLFLYYIFQLIEKDFTD
TPKEISDYKQYLGDVITNYKVVTWKNQPLFTEKIKSEIRDFLDVKLTTKE
CELLVKNYKNTLEMLEQKMPPSMIKYHRNSFK
>Tmden_0315 transcriptional regulator, ArsR family
MDVFLKTIGAVNDYTRVEILHYINQSGEVCVCDIENSFSMIQSRISRHLK
ILKDAGFLKVDRRGRWAFYSIVEPMDEFRASILKEINSLGINISLQKKGC
NLE
>Tmden_0134 GCN5-related N-acetyltransferase
MNTTLYFLRSSEQKIATDMLRYAYRLDEINKGVEDFSELEVFSKFYGLSS
KDLGLYALSGHNIAGAAWIRLLKESDNAIGFINDKTAVLSIAVKPEFRNK
GIGKAMLEQLLLEAGALFEEISVSVLNNEKALSYFKNFGFVEVENSLKKS
GVDRSEVITMLKKIPNERVVRPCDGYDPRKWMD
>Tmden_1242 two component transcriptional regulator, winged helix family
MKMKNRVLKDLKIILVEDEENLARLLKEAIGDNFHSFTVAKDGIEGIEFF
KKIRPDIVITDIMMPNLDGLKMAKELKRINPNIPIIILSAFSEKEKLLSA
IDVGITKYFIKPFDAEELLEYISSITSRIENKILKLSDCYIFNKNTSSLY
KNEKYIALSKNDIKFLYLLLDSKNRTVDDISIKEALWGGDASDERLRTFI
KRFREKTSKMLIKNIKGFGYQLLLNEN
>Tmden_0436 transcriptional regulator, LysR family
MLKDFAKLQTFLMVIKEKSFSKASAKLGISQPAVTQQIKFIEDYLDTKIV
DRKKNGILLTKEGEELFRIATRLEKAISGSEKEILKIINKDFTFVMGSSN
AIGNYILPNYLSEIKNRINNNVYMNVGLSCEIIDQLEDKKIDVALIESPV
FRDGIVYREWVLDELVVFSNQPLKKHLTAEDLLGFDWICRDEHSHTRKLT
SEAFDEMGVQCSNFHVLGILGSPTAIKESILHADPNSERPVVSVMSKHVI
AAELAEGKLFDARLKNYKIERNFYIAYLKDRKHDAFVDNVVNYLLSLNKV
>Tmden_0133 hypothetical protein
MKKIIYSLTCISLLTSCAMADIARAEMGAGVWMQSSKGNVNYSDGGANGT
YVSREKDNSELYVWALVKHPVPMLPNLRLEYASIKDDGLATGKFKDFDIG
AATTTLSYDMKQYDIIGYYNILDNTAWTTFDLGLDIKIVDASYVAAPSAP
FTGYSDSVTFAVPLLYARVRVEIPSSELGIEADIKYITTGNSTVYDARIK
ADYTLDFSPVIQPALEVGYRVQKLDIDESSVDARVDIDFSGIYAGLMFRF
>Tmden_0533 transcriptional regulator, MarR family
MKKNRVNSDLITNFYDKVEAKELPEIFLMTFPIALIHKTIFSHSESFLKE
RFDLLNSEVDVLASLYTHGKVLSPTQLYDMTIFSSGGMTKVLKRLQERDL
ISRKEDESDKRCMLVCLTKKGEELIVKSLNDISKECSKYFEAFSQDETEL
FSNLLKKILLNINKV
>Tmden_1439 transcriptional regulator, TetR family
MLKKKENKKELIMQAALELFASKGFYTTTIPDIAASLKMSVGNMYNYFKS
KDILAREIIKYISVYLGQQLREINEQDISTKEKTRKIIEIYFKTASLKPE
MIDYFLRIYLSNREVFKDSCEGMLCVNEFVTEIMIYFEEGVKCGDLREQD
FFSAFGLFMGYLGGMVFLNGENILPKDLNEYVDDISFNIYKALCSE
>Tmden_1056 transcriptional regulator, TetR family
MPEISIGKEKTGTKQKILKSSSKLFSEHGFKATSVRKIASEVGIRESALY
NHFKNKEEIFLCVAKDIFTTPFSQIDSDIKESALKGKVFLQKFSMQYKLL
TFDKNNENMFRLLMIELFQNQELREQFISEFHNENIKILSEAFFIMMQNS
LIRSADPMMVAYEFLSTLFYIRLQVTLLRFDALSTNALSTQFEKHVDFFW
ESIRV
>Tmden_0718 RNA polymerase Rpb6
MKIEELTAKILDNNPNMDRYQLAIAVAKRTDELLNGANSKLNVSKKIKTA
DLALMEIAEGLIIIKGFADIKK
>Tmden_2016 hypothetical protein
MIYDVFPSAIELKDVVRQYVVVTSLEGIEKLLFLPNGCNFIIFNRGFDGY
IKIYNEDKRFHIPKNYSISIKNNKIKKFKLYDKSLASSVKLPLIMAELTP
IGFYKLFNRDATILNKCFLEIQENIIDEYFSQLYTHECVEAELKYLNDAL
DRLQKSCNNTRMCIQDVMDKIINIYRFEVSVKHLLEEFSCSRSKLEREFK
RNIGFTPKNFIYISKFCKTVLAYIEDDCGFNEMEYLYSDYSHMNSVFKKF
FGASPSVVFEDVTNNKILLYQMQRAQKHSI
>Tmden_0123 Protein of unknown function DUF814
MKLSHLKQILEYLQKFTKISSIYRVSDTIIKVSFDRDDELYFEMARSNSK
IFKCLSYARSKVYNAPFDVLLAKRFNRANILHVELFGGDKIVRLKTSVAS
AYKEEITYLQFEFTGKYTNVIILDESEIVLEALRHVDLFSSFREVRVGQK
LLDIPAAPFEAKEYILDDVESFLYDEYEQEQREKLASLKKQKISLLSKKL
KKLEKLYTTLDDEDELEAEAQKYNHFGNLLLSNMHTIRPYQRVVELDDYN
GVKQRVELHKEFSTPAMMANSLFARSKKAKQRASHLHIERASLISKIEHI
KLFIHTVTEAKDMAKIQLLFPKILQSKKIKTDDSIETFWIEGYKVTLGKN
EKGNITLLQNARAKDIWIHLKERPSAHVIITTDKQNVPMSVIEGAARLCV
DFTMFEKDRYLVDYTPRREVTIQSGANVLYNKYKTIEIDTR
>Tmden_1991 two component transcriptional regulator, winged helix family
MKIEKIRDISILLAEDESELRELLHEYLQLFFGRVYAATSGDQAYDIYKQ
KKPDIIITDISMPNLDGLEMISKIRESDKETKIIVMSAHSEQERLLLAIK
LNLESYLIKPIKTEALKTILLDIVKHLREKSRRTYVTENIYWEHETNTLW
GNSKEIKLRKMESMLLKLLFSRPNEIFSTKEIFDYLHETKNDKEFSVHAV
TSLMKRLRAKLPNEVIHNIYGSGYKIIPI
>Tmden_0968 response regulator receiver domain protein (CheY-like)
MSIVKELKDFAKNLSVIIVEDDKALNEELVGVTELFFKRVFFAYNGVEAL
SIYKNNNIDIVITDITMPKMDGVVLSRNLKQINPNQDIVVISAHRDIEYL
VKLVDIGIKQLIYKPFDHQELLYRLLRVCEDKVLSNKMDEYKEDCSSLLN
TTTVANNSIQNKKAIYKNQNRTILHLNSEMEQDIEYLLELRDDLENLVNE
LHYGVEVSVINGISSVLSKIYTLLSQIGATTKISVVIFELANFLESINFE
LLSDEQKSKLEMMEFIYDDIAKFVDLIFVKREVQDTSYLEDSLRSSLSQL
KQSVFNDFLVEEEFELF
>Tmden_0317 two component transcriptional regulator, winged helix family
MRILVVEDDEKIASFIKKGLQEESYSVDVTSNGYEAIYLVETNSYDIVLL
DLMIHGLGGIDVCKNIRGKNIATPIIMLTARDAIKDKVEGLDCGANDYLT
KPFSFEELLARIRSKLRTTSTLSSTIAIADLTINTARREVKRGDKKINLT
AKEYALLEYLARNSKKLLSETIIKENLSDMAEVSMSNIVNVYIYRLRNKI
DKDYEPKLIHTVRGLGYMLSEKDV
>Tmden_0555 transcriptional regulator, MerR family
MIHDYDEPVYLISIVAKVLEIHPQTLRQYERENLVTPSRSNGKIRLYSQR
DIDRIKLILRLTRELGVNLAGVDIILRLKENVDGMEQDILDLRQEVMRAK
NSQTVSHDKALVAKKSIYEMIIFKK
>Tmden_0234 transcriptional regulator, XRE family
MHILNDLTPAELENFYRDIGKNVKNARKEKKISQMQLALAIGHNSVGHIA
KAELYKYEKHFSLEQLFKISRILDISLHDLIPE
>Tmden_1365 two component transcriptional regulator, winged helix family
MKILYLEDDITLCDTIAEYLIEEGFDVKAVYDGEEALEQVYKESFDLFLF
DVNVPKINGFKLLHELRGANILTPTIFTTSLQGINDLSMGYESGADDYIK
KPFALKELLFRIKALLKREFKSQNFIIKIEDGVKFNTFTNELYIRERKTA
LNPKETLLLKLLLKHQNECVLLEDIYSELWTHDEPYSDMSLRTYIKNLRK
LIGKEMIISIKKVGYKLVQ
>Tmden_1505 GCN5-related N-acetyltransferase
MQIRELDLKELQMAYDVLCQLRTTLSYNEFEDLIYEMRSIEYKMFGIMDG
EKLITYAGAAIQTNLYDKRHLFLFDLVTCKDYRGMGYGKMMLEFLADYAK
MGMCQNIVLSSGFQREDAHRFYEKSGFFKKSFVFIKGV
>Tmden_0225 hypothetical protein
MAQKSYDKALFRLISILSMLTKDERPTISSLAEEFNVSKRTIQTDIYQRL
RGWDITKDKFGRLVFRDGVDIFNAIGKFGRKGKRVVF
>Tmden_0935 transcriptional regulator, LytR/AlgR family
MKILIVDDEELARKRLIRMLLTLKYTEVQEAWDADEAREIFKKDSFDIVF
LDINMPRVSGIELGYELKYLNPDVGIIFQTAYEEHALKAFDIGAVAYLVK
PYSIEQLQGSIRRIKAPLIQKREFKILSKFGDSYLLLKPQEIYYVKADLS
EVMLRTSKGFSYYGEKISNLHVKLESFGFIQIHRSYLINSNEIKDIQTIE
QSKLRFSFKNSSDTIESSKDGAKAFREKFAFL
>Tmden_0884 two component transcriptional regulator, winged helix family
MKILLLEDDVILSEILYEHLSEKGYDVSSAYDGEDAYEKIINSRFDFMLF
DVNVPLLNGFELLRLLGEQHVNIPTIFITSLDSAHDLKRGFDLGCDDYLK
KPFDLVELDARINHLLRVHNLNSLHVVIDAKSYLDKLTYELVKGEQRVKL
SKKDFEIIEYFLSHRERIISHDELAANIWLDSETPSDSTLRTYIKNIRIY
LGKDFITTIKGVGYRVNI
>Tmden_0208 response regulator receiver domain protein (CheY-like)
MSSDVDTSLLDCLSSLTLLCVEDNKTTQLIYHSIFKNITKRVIFADNGKD
GFEIFKTQKIDIIITDYEMPNLNGIEMTKLIRELDKDIPIILVSAVQEID
IIVEALKLNVNNFLKKPIILTEVIQAVEKVSKILIADNYLREKREKKLKE
LETKGKYNSLQEELAFAKELNIIRNDFYYQMHENSSIALIDFFYKPLDVL
SGDSYSAREIDKNMQLYFIIDGMGKGLSASLSSMLLTSYLNHLIDKRVNN
FDFKSLINSAVEYIKPVLLEDEAMSADFMLIDYKNSKLHYAKFAMPSSLL
QTTNGKIVKIKSNNAPLSKYIKKIKISSFNISNILKFLFYSDGVVENSIR
EKDKTYANYLQSDFLASFTKDELREKILWRIDKQEDDMTFIFINRFNLMK
YISNVQNVFDTSLDAIEKANEWYGDFWSCTSSDYKLIYNAGVVFNELFMN
AYEHGNLGLDAQMKHKLINDDNYFATLEKLEKTCNKKISVCINIIEYNSN
KYVTTAIRDEGAGFDTQILSDIFRNRKNFNGRGVYISRQASLGIYYNTKG
TSVLFLHKLESEKA
>Tmden_0546 GreA/GreB family elongation factor
MQEPMSIEGYDVLIEEFKFLLEVEKPKTAQEKLVAAALGDRSENADYQAA
KEKLRHIDKRLFYLNAMIQKAHIIDPSTLLHTKVSFGSSVRILDLESDKE
EVYTICGVLESEPENGLISIHSPLAQVMLGKRVSDEFKIQLPLMKKEYEI
LEIYYKNIFSLKKNVRKKSDFAFH
>Tmden_1458 two component transcriptional regulator, winged helix family
MKILLLEDEVMLNESICEYLDSEGHHVESFFNGLAALEAIKENSYDLLVL
DINVPGIDGLSFLEKIHELKIHVSVIYISALVDIEDISRAYTLGCHDYLK
KPFHLKELSLRVDRIKLSSVVPRVHLRLCKNYSYDQENSTLLFNQEVQIL
TKRQAQIIDLLSRNRGRIVDFEQFQTYVWSEQIVDNATIRAEINRLKKNL
KEDFVINVRGMGYMIDKP
>Tmden_0327 DNA-directed RNA polymerase, alpha subunit
MKKIKTTPLAPQEFEVEQISENEANIMAYPFETGFAISLAHPLRRFLLSS
SVGYAPIAIKIEGAKHEFDSVRGMLEDISDFILNLKETRFKLLGGATEAE
INYNFTGPCDIKGSNLSNSEVEIVTPNTHLATLNEDSTLNFSIRIAQGIG
YVASEDTYDELQDGYIALDAYFTPVRSATYKIENVLVEDNPNFERVILNI
KTDGQITPLDAFRNSLEVMYAQLAVFNSEISVKAPATIERAEESPDLKKL
TAHIDSLGLSARSFNCLDRSNIKLIGEIALMSTNDLKNVKNLGKKSYDEI
VEKLQEFGYEVGGDLADDVVSALKKKIEAL
>Tmden_1759 two component transcriptional regulator, winged helix family
MKKILMIEDDLELAEILTEYLQQFGFDVVTEDDPFKAVSILKLEPFDLVI
LDLTLPGMDGLEVCEAIRERQDIPIIISSARSDVTDKVKALELGADDYIP
KPYDPRELEARIHSVLRRYEAKSQQKEESKSDFKCDMSSMMITYRGRNID
LTNAEFGILSYMIAKQGLVVSREDLIHNVNAINEDSSNKSIDVMVGRIRN
KLGDKSLIESVRGVGYKLLK
>Tmden_1880 two component transcriptional regulator, winged helix family
MQAIHKKLHSLTLLIAEDDESTLKWLSRVLSIYFKEVRVAKDAMEALELF
EQTPSDVIISDIQMPQVDGLHLLQKISLLSPSTTRVVMTAYNTPEYINRA
VESNVDFYLKKPIDIDEFLVAIASSRAKVDEQVFFLNEGYMYDYKQKLVK
KDEQSIKLTKKEVLLLELLLKNRKSIVSIEQIEHSVWEESVSDDAIRMVV
VGIRKKLYQGVIENVKGLGYRVE
>Tmden_0610 DEAD/DEAH box helicase-like
MSFEKLGVIKPLLSAIKDLGYEKPTTIQTRAIPLILAKSDVFATAQTGTG
KTAAFGLGMLQRLRKTSDDKQRALRGLVIAPTRELSIQIYEDLQSYAKNM
GINIAVLVGGKDLESQQKILKEGVDIVIATPGRVLEHVDKGLSLSHVEIF
VLDEADRMLDMGFMKEIRRIHPILPKRHQTLLFSATFSDKVRKLSKLILT
KPAFIETSKKNSTVDTINQVAYLVDTEKKAPLLAYIIGSRNFRQVLVFTR
TKASADLLVVELKKDGLKCGIIHGDKTQANRLKTLNEFKEGKIKVLVATD
IASRGLDIEELPFVINYELPSIPEDYVHRVGRTGRAGRDGMAISLIDIYE
KFDIKDIEKLIGMKIPQEIIAGFEPDPTIRRLDQDELKLKSEHKKVEVKH
ERKPRKKEDGSKKSANYKKPVTTKKRKTSKRD
>Tmden_0135 Competence protein ComEA helix-hairpin-helix region
MTGGADDEVLREFETIYIAAKKLLERKEEIKRLISERATLTQELSKSIED
ADTMRVLEDIYRPYKEKKNSRAATAIKNGLTPLANILESAKLSADEFKTK
AKEFVKGELSSVEAAIDGAKDILAERYADMPREREAIRNMMLRSGVLEIK
RTKTFDENGLFKNFDGKSERVAYMPSHRYLAVMRGVNEKELSAKITIDVQ
KIEANIKEYKIPRNASSSKEFLFEAYKDGLKRLLLPSLEREVNSELKERA
DISAISVFGKNLNQLLMTPPVTKRVILGVDPAFRTGCKLAVVDENGNYLE
SSVIYPTEPQNDYENSKKKVLAFKDKYNITGVAIGNGTGSRETQEFFARL
NKDEGANLNYTVVSEAGASVYSASKVASLEYPNLDVTIRGAISIAHRLQD
PMASLVKIDPKSLGIGQYQHDVDQKLLEKKLTDVTQDLVNRIGVDINSAS
LSLLSYVAGVGTKVAQNIITYREENGAFKTKEQLLSVKGLGKKAYEQAVG
FIRIKNSKNIFDNSGIHPESYEVAKKLTGLDLTNIDVQAKAKELCVGEET
LRDIIKELCKPGYDPREELPPIPFKDGITDIKMLHVGSFVSGVVRNITDF
GAFVDIGLKNDGMIHISKMAPTKVSHPLEVLSLNQYLPQIEVISIDEEKG
KVGLSLA
>Tmden_1976 putative transcriptional regulator, AsnC family
MKDEILSRIQKKFPLVDRPFKVIADELGMSEDEVLAILQEQKKANIIRQT
SAIFDTKRLGYVSSLVAFKIPADKISDAVKIINSHPGISHNYERNHDFNI
WFTLAVAPNSKLGLERTVEVLAEATGAEDYIMLPTLKLFKINVKLNTTGK
DEKKEEVKKVKHTEIELTPLHHAIIRAAQYDIEMIQEPFKAIIEELNIDY
DTFFKILDELQEAGVMRRFASILNHRKAGFSANAMVVWDVDEEKGEAIGE
RAAAFSAVSHCYLRPKYSNWPYNLFTMVHGKSEQETNSIIEEMASEIDSK
SHMPLYSSREFKKVRIEYFTPEFEAWESKYSN
>Tmden_1430 Hydrogenase accessory protein HypB
MCKDCGCSIVEQRESHSHEHHHHEDSHHEHHHGDEHHGSHKHLHDNPQLN
DPKTISIISKILDKNDHEAGHNRAHFNSHNVLSINLMSSPGSGKTALLEA
LVDVADFKFSVIEGDLETSRDADRLKAKGIEAHQIQTGSACHLDAFMVHK
ALHHMDLDSVDVCFVENVGNLVCPASYDVGSHLNIVLVSIPEGEDKIAKY
PVMFRQADLILFTKTDLLPYFEYDMQKEKEMARKLKPSVDILEVSTKDEE
SIKRVASWIKFKMEMR
>Tmden_1504 cold-shock DNA-binding domain protein
MAELLDGSVKWFNEEKGYGFIQQENGGKDVFVHFRQVNRTGPGRVSLSEG
QKVTFELGEGQKGPQAENVTPL
>Tmden_0625 two component transcriptional regulator, winged helix family
MSKILFLEDDLLFAETLIDLLEENNMEVVHVPNGQAALDRTFKEKFNLYL
LDINVPLVDGVTLLRELRESDDDTPAIFLTSHKEKEVLKKGFLCGADDFI
TKPFDADELILRILAIIKRAKKEDVTCIGLLCNDDTHKRFLYDNKEIELS
KKEYQLLRLLIKHANNTVPKEMIIDTLWSSSEGGSDGALRVYINRIKQLV
PQINIENIRGVGYKLVS
>Tmden_1553 transcription termination factor Rho
MSEIDSQQPRKSINNKSSAKTRTHKPVKGVSVEDLRIKSIEDLTAMAVEL
NIEQPNELKRQDLIFEILKAQTEQGGFILFSGILEIMQDGYGFIRSIDKS
FDESINDAYVSNTQIKRFALRNGDVVTGQVRPPKEQERYYALIKIEAVNG
LPPEESKKRPLFENLTPLYATEQIKLEYREKGLTGRMMDLFAPIGKGQRG
LIVAPPRSGKTELLKEIAHGITHNHPEIDLMVLLVDERPEEVTDMERSVK
GEVYSSTFDMPAKNHVKVAEMVIEKAKRRVELGKNVVILLDSITRLARAY
NTVTPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIIATALVDTG
SRMDEVIFEEFKGTGNSEVILDRKIADRRIFPAIDILKSGTRKDELLIGP
EVLQKVFILRQMIHKQDNEIEALKFVYTTMGKKPTNEEFLESMNTNQ
>Tmden_1534 GreA/GreB family elongation factor
MQKIEPMTLFGYNKLQAEVKNIKEVKRPRVVKDIEEALEHGDLKENAEYH
AAKEQQKILDNRLAELAELIGSSKIVDPTELEHTKVSFGSTVVVCDVISE
IEYTYTIVGGCESNPDIGLISFNSPLAKQLLGREEGDDVKVQLPNGQKEF
EIIEVTYKEIVFECH
>Tmden_0025 DEAD/DEAH box helicase-like
MSFTTLGLSAPILKAIKDQGYTKPTPIQKQAIPIILSKKDILAGAQTGTG
KTAGFTLPLLELLSRDKSSTKKRIRALILTPTRELAAQVGESVSIYGKYL
SFTSTIIYGGVSINPQLSALRKGVDIVIATPGRLLDHLSQKSIDLKDVEF
LVLDEADRMLDMGFINDIKKVLAVLPKNKQTLLFSATYSDEIKKLSDRLL
NSPVLIEVERPNKTAQSIKQIVYPVDKERKRELLVHLIKEGKWQQVLVFT
RTKHGANKLSAQLEKDGISSSAIHGNKSQNARMKALQEFKDGDIRVLVAT
DIAARGIDIDQLPHVINYELPNVPEDYVHRIGRTGRAGSSGDAISLVCID
EHEYLSSIEKLIKTDIQKVWLKDFKPDPSIKAEPINQGGQRGSHKKRR
>Tmden_0664 two component transcriptional regulator, winged helix family
MISPKYSLIGHKFMRILIIEDEVTLNKMLAEGLKEFGYQSDVVETLKDGE
YYLDIRNYDLVLMDWMLPDGNSIDIIGDIKTKTPKTVVVVLSARDDNESE
IEALKSGADDYIRKPFDFDVLVARLEARLRFGGSNIIEIQDLIINPEEEK
ITYKEVEIELKGKPFEVLTHLARHRDQIVSKEQLLDAIWEEPELVTPNVI
EVAINQIRQKMDKPLGITTIETVRRRGYRFCFPKEIN
>Tmden_1096 putative phage repressor
MKNFLDIVEEIKSIVSSQYSGKKIYDKDVADILGISQMNFATMKKRNKIP
FGELLDFCALKSISINWLLYGQSPESLVEATNRFFMIKYFSDVSASAGGG
AELENESNEMIKIPQEFVAMLGGERELKHIEAINVSGDSMEPTFSYNDIV
FINRDKKDLQRGGIFTIRTESGLFIKRVQKRIDGKIDVISDNPIYSTQTL
NLGEIEVIGRVVSRFGNVD
>Tmden_1011 response regulator receiver domain protein (CheY-like)
MLVSASIKGKNLTFDYYYNKETQMLFYKNEQITLSKQESQLFHICYLSKG
SFVPMHTIEYYIWGEEYVNDSTKRGLIYRLKKKLNHTIFEYLGGFGCKVD
GL
>Tmden_0403 NusB antitermination factor
MATRHQARMAVVSLLYAFDLGNGNIAEHTDEILEEKKIRNKQKDFALTLY
EGVMANITPVDEAIVKHLKDWDFERLGAIERATLRLATYEILFGELDSAV
VINEAVEITKAFGTEQSPKFINGVLDAISKDK
>Tmden_0009 two component transcriptional regulator, winged helix family
MEILKSYNAIIVDDDKNISSNMFKLLKLYFKEVHSFEDAESAFEFIQENS
VSIIISDIELPGMNELKFAKKVKEFDESIEILILTSFATLEYLKEAASLH
LIDYLEKPISLDKLESILQICAQKLKKNLHYNILISKNIIINFYKKELSV
KEEVHKLSHRESSLLEILLHDKGKVVSKEFLMQELWQDTEGTNAALRNLL
LRLRKKLGDKKIIQNHQNYGYYIE
>Tmden_0947 putative transcriptional regulator
MKLQINESQNIEFKQTWRDEYIKWLSAFGNTDGGKLYIGVDDDGGIKGID
NAKKLLEDIPNKVRDILGIMVDVNLLQDEDKEYIEIITDKYPYPISYKGS
YYYRSGSTTQELKGVALDKFLLRTQGKTWDSVPVPYFGDTDLDPYAFKLF
RDKASKKKRIDPELLKESDDVLVDKLRLREGDYLKRATALLFAKEPMKYV
MGSMIKIGYFKSNTDLVYQDVIEGNLFEQVDKAIELIFTKYLSAFITYEG
IQRVESFPISELAFREALINAVVHKDYSSQNSIQISVYDDKLLMWNAGDL
PPHWTIDTLLRKHTSEPHNPLVAYPFFLAGYIESWGRGIEKIIEESQKFN
GITPQFRWENGLWVEFYFNNTPNKIENTETRVKARVKTREKILELISVNP
NITNQELADTLELTVKGIEWQIKKLKEDGKLERIGGAKGGHWEILK
>Tmden_0621 transcriptional regulator, AraC family
MKKETLQKRVQIANAIMYYIYTHIDTNIAMDELSEDLKISKFYMHRIFKD
VFGKNIYESIKSIRLQKASNLLLTNKYSTISDVANICGYSSQTSFLRVFK
ERFSMTPKEWKSGGYKKFSQRIIEQSPKAKKSTAKFDHLEPTIVKMPQME
SYYIRHSGYNALIKSTWQKLQTWVFSNNITEYKQIALFHDNPTITPLNEC
QYVACIVVDKGVKVKSDRLPKFNIAEGIYAKFDLIAEQGDMLKFIQWLYH
EWLPKSEYETTTKPPYVIYKKNNYLSEDSRFDISFYLSIKF
>Tmden_1288 putative transcriptional regulator, ArsR family
MLDMQQKIKIFKALGNETRFLIFKNVFTGGYVCSIDDKNAKIEANPHATC
VTTIAKHFDFSMPTISKHLQLLREANVIKMQKKANKIYIEPNIETIRELG
GCFTKLVENFETDRELFFDDIVLK
>Tmden_0236 hypothetical protein
MIRKLVLIIPALVFAFGNKQQYEIDQKAQQIGFSKIFDKYKNGILEPSSL
EFNSMVYDDSNNIIIAGAKSGKPIVRKVDVHGNELWRKQYGDDYGGVQYI
EKASENTYILIRNTEDKKNKNSFLTQVLLIDTYGNLKGESLFPLLLDENS
KIKQTNDKGFILVSGTNIIKMDANGFKVWHQTYENLDLNDFIELVNDEYL
FVGKKNIDEKKIDKSAHIMRTDSKGNILWNKDYTNINEFQNIIAKPNELI
LMGNMPLQVTITKIDQKGNIIWNYIHTASENTFGRDFIENKSGNFVVAGK
IYMSSVKSEYLMIFELTNNGELLWNHSYGLSYGSDTANSILEAPDGYIMS
GVITPIEHKRNESGFFPSRERGWIFKVNRQGVYSD
>Tmden_0719 metal dependent phosphohydrolase
MSQVDIGQIKKIDTVDLAIKYLFAQIPPSQALQKALDYSTLAHVNQFRKS
GEPYIIHPILVASIVSSITNDESMAIAALLHDVVEDTEVDIEEIKDVFGA
DVAHLVEGLTKIDSIRDTELVSSNSNEKLVVSALSFRKMLLASIKDVRVL
VVKLCDRLHNMLTLESLSAQKQQRIAEETLVVYAPIAHRLGISFLKNLLE
DLSFSTLFKEEKEQIDSYLEVHYHAIEMKLIEFKEAIEKVLVQNGFCEDD
FEILSRVKHKYSIYLKMQRKGVGIEEILDLLALRILTKDPVKCYSILGLI
HLHFQPLSSRFKDYIAVPKDNGYRTIHTTVFYKTAIFEVQIRTYEMHETA
ELGVAAHWKYKSGGNDAIKLDWLHNLGYQNESIEEFYDLIKNDLYSEDIS
VFSPKGEVFTLPRGAVVLDFAYAIHTHVGNHAKSALVNKAKTSLINELHN
GDIVKIDVDENIITRCSWLDAVKTSKAKTNMRYNCNARVRDVDSKSSINI
VATAMNLNSSVIEAWFEKNSCDKRATIATDIEHLRDVVQRYIAEIEKNSR
IKGFLSRRRFKLKPYSFRGLEIYSTSNINDVVFDYCCHPKNGDEIMAFLE
KNKAHVHHKMCSSATKKLDEKEAMVFVRWEKLNIYNYNMIVSLHSGVGTL
AEFLNFLAKLKIDINQIELGKNKSESTRYCEIGFESKEADINALRAKIEQ
KIKVIHFIRTDDAYR
>Tmden_1924 response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase
MNTITVLAVDDEPFNLDLIELAFMDTENMNLIKAINGQDALDKLQHINAN
VILLDLRMPVMDGFAMLEKIKKDPIYSKIPVIIVTANSEEKNRALALGAN
DFLAKPVDTVELKLRTLNYTKLHKSQVALEELNKNLDKLVIQRTAQLHVA
LKLAQETEYEVSLRLGMASEYRDLETGMHIKRISHYSALLGKLSGMDEEQ
ERLLLYSSPLHDIGKIGIPDAILLKHGKLDDKEFKLMKEHTTIGGLMLKD
GERYPIIKAGQIIAQQHHEKYDGSGYPLGLKGEEIHIYARIVSIVDVFDA
LSSKRIYKDAFPLEKTIEIMKDGARTHFDPILLNLFIDNLDKFLEIRDSF
TDVDETPHLINLIEEYR
>Tmden_0675 Protein of unknown function DUF448
MAKKFNQPLRMCVSCRVRDTQINLFRLQCLESQLSLFRGNGRSFYICKIC
LKDEKKVLKAFMRQCKSSDRDKFSNILKEIITDDRKS
>Tmden_0837 two component transcriptional regulator, winged helix family
MNIESITAIIKFKIDIKSESYLSSKKLLANTKQLSILLVEDHDDLRENTK
EILKKFFDTVDGSKNGEDALKKYKEFHKNELKYYDIVLSDIQMPRLNGVD
LVENIYAINSDQIIIILSAFDNSKYLLPLINLGIEQFIKKPIDYQDLMKV
LLKTTKKIILKNEQKNSFQTPSLIKLAGLCTFDKETNILLVDNDMVTLTK
YEIIFLQILTDNIGKIYSNDDITKQYDLLNETLDIINIRKLVSKLRKKIS
FNCIESVYGIGYRIVPHFN
>Tmden_1631 hypothetical protein
MTELAKMIFEHTGSLILNKKQVAPLIGKSVAFIDQAIHQNRLEKIPMFTK
NESGGGIEFHVEDVATFLDFKKQIKSKQIA
>Tmden_0587 conserved hypothetical protein
MKFEVIQNEYSALLKEIQSYFKNSQNSIHKARNEIKIIDFKQKSLVIKSF
KVPHLINRVVYTFFRDSKAKKSYENSVKIAQFVPKPIGFVELKKSGLLHE
SYFVSENFEYDFTIREPLLESVFLDREKIFKAFAEFTFKLHVEGIFHLDY
SPGNILIKKESDGYIFKIVDINRMEFKPLNLDKRLKNFSKLWAKDEDLKI
IIKEYARLYKSDEERSIKIALQYSQAHKNRKNRKKRLRGEAVVD
>Tmden_1559 two component transcriptional regulator, winged helix family
MSAKIVVVEDEEDILELIEYNLAKEGYEVIGFLNTKNLQQLLYEERIDLL
LMDRNLPNVEGSEFISLLREKGFTTPVIYLSAKSLDSEIEEGFLRGGDDY
ITKPFNMRELLLRIKALLRRTTRNVEDTILSHRDLVLENRERTLKIDGKN
VDITKLEFELLSEFIFNKNIVLDREYLLEHVWDGAEDYQYQTVNVAINRL
KEKIDPDKTKEYIQAVRGVGYKLC
>Tmden_0706 sigma 28 (Flagella/Sporulation)
MISAYTQDLKHKEDELAIQYLPAVKAMAFRLKERLPSSVDYMDLSAIGTE
ELIKLARRYDESLNDSFWGYAKKRVYGAMLDYLRSLDIVSRASRKLIKAI
DYAIEEHRAIHDEEPSDEELALIIGEDIEKIHEARIASSIYAVMPLHDQL
QVGDEGASLANIEKEELIDVIKTVLGLYSEREQMIIQLYYFEELSLKEIS
DVLGITESRISQIHKSVIHKIKESVGA
>Tmden_0964 two component transcriptional regulator, winged helix family
MENILDENIYSPEIDLYEFKEQVIELRKYTKEINILIAEDYIVLQQSLFK
IFTPLFKEVGIASDGAEGLELYKKKVANGEKYEIILSDIAMPNMNGVEMT
KKIREIDDEQIIFIFSAYQDSEYLLELINLDIRRFLTKPISLETLFHELL
ITCRAIYGKKDLSNKITLRSNVYYYTSERELYIDEIAVKLSNYERLILEF
LLSKINSTVSNIEIINYLYFNGVDVELENVRKIVYKLRKKLSNDLIENIH
AIGYRIKQ
>Tmden_0502 conserved hypothetical protein
MSLLLLIGCSSQKEVVAKSAIFQSVSNDEALLLSKESDNGSCLRCGMDLV
KYYKTNHAASLDEKIYQYCSIHCLQDHLYDGVSLKNPQVVDINSLKFIGV
DKAYYVVGSNVKGTMSRISKYAFSSKEEAEIFQKKHGGEVMDFYKALEVA
TKDFKERR
>Tmden_1945 DEAD/DEAH box helicase-like
MPFSKLGLSQNILQALKQNGFTKPTPIQERVIPLVLERHDIMAKAQTGSG
KSASFILPILELLSRDSYEGKAKIKVLVLTPTRELTQQIVEAFNTFGAFM
SKKPKVVGVIGGEGIGEQLFNIQKGCDILVATSGRFLDILSKKQMILSHV
DFFVLDEADKMLDFGFAEELELILEALGQKRQNLLFSATYPPKMLFIASK
IMQNPIEVSVEDEEPTVESVVQRAILVSRENRAPLLRHLLKSEKYELVIV
FMSSKRAADNIAAKFRKHGFSADSFHGDLHQEDRNYTLEEFKTKKLQILF
ATDLVSRGLDINDITCVINFDLPRSSADYIHRIGRTARAGKAGMAISFID
HEDEAHFRLIEKRSNIRLKREQIEGFELTTEAPKREKGKEPIKGKGKSKK
DRAREAAAGIK
>Tmden_0247 two component transcriptional regulator, winged helix family
MLETLKDKSILFLEDNLEFAQNTIVLLNIFIKTIYHVVTISQAKAILKSR
HVDIIICDIKLKNENGLDFIKEIRSSDLLTPIMIISGHKDESFLFRAIPL
YLSAYLLKPIKYEELIEALQICSEKIIINSKEKINLKDGWCFDTKLCILK
KDEEEYALNKKEAQFMKLIAYNSERLITKEMLHESVWEFEDMSDSAVTNF
MLRIRRRFGKNFIYTIPDLGFRFNIH
>Tmden_0725 transcriptional regulator, BadM/Rrf2 family
MLITRASEYAILSLIVLSKASAPMDSETLSTQLSIPKSFLAKILQAMAKH
GILKSFKGVNGGFSLLLEPKDIKMLQVIASVEGKAPAVFECSPSMYSCPS
GKAQLCSLWPFLNKLQGKIDSFLADLTLADILE
>Tmden_0888 putative transcriptional acitvator, Baf
MLLCDIGNTTYHFFDENSSYKEDAKLFNPSSIKREVFYICVNSSVKERLS
LLDNWIDLSLHVDMSRYYKTMGIDRIMACEAIESGVVVDAGSAITVDIIK
NGNFEGGFIYAGVKAMNECYKNISAQLEYSFNFELDLDKMPKNSRDAISY
GYLGLLYKEVASYGMKIYLTGGDAGQFSKLFLNSDVDELLLFKGMKNIMK
KANLC
>Tmden_1105 sigma 28 (Flagella/Sporulation)
MTAKELNKAIETFFANQKPKECSTYESLIELFDKQPTAAQAANIFKLIQK
HKACIYTSSEHAKLLNDKEAEARRSAQRKMIENNETDSFDILKEHELLEW
SRSDSPVRMYLREMGQIPLLTKEEEIEISKKIEGGESIIIDAICSVPYLI
DFILDYREPLINRERRVKELFKSFEDEKDESDDSEDSDDDVEDSDEENVV
EKTLTAKDKSRVEKVTISFKALEKAKKEWIKLAEKLAENTDAELTADLVM
HYLSATYKKGVLKERLLDLGPTSKLINELVKAMETALKSDEGYDKELKRL
EYKLPLFNATLKANHRILVDKICDLTKEDIATMVPEATMVSTYMEIKKLV
QTKEASKNSFDMDPEKLADILEQIKRGKNISEISKTKMAKSNLRLVVSIA
KRYTNRGLPFLDLIQEGNIGLMKAVDKFEYQKGYKFSTYATWWIRQAISR
AIADQARTIRIPIHMIETINRINKIMRKHLQEHGKEPDVEVIALEVGLSV
EKVKNVIKITKEPISLEAPIGSEDDGRFGDFIEDKTSLSPSDAILKDDLR
VQIESVLEQLNEREKAVIKLRFGIMDDESDRTLEEIGKELNVTRERVRQI
ESSAIKKLKHPKVGRKLKNYIEE
>Tmden_0804 hypothetical protein
MSDFLIVLEKIKLFTNTSSDKDVAEKLGVKPDTLSQWKKRNKIPYSELCV
FANLYNVDLNWLLLSDKGTQKISLPDYLIILVNKSYELNRIGLTENLLKF
IFESSIKQKLRSYDKSVPFLKYLFWDRYDTLANFRLMMRALKKFKKGDVH
NLKIEDSKAVLIDLIKNYQLTIGDRTVYTIRNKDKKNTLKWLEDTFDDLE
AYAILMDMELAIKAFDEAKEWLSINLPILKIKGEEV
>Tmden_0353 DNA-directed RNA polymerase, beta subunit
MLNTLYSGNRLRVDFSKTPQQIEVPNLLQLQQSSYNKFLMLEEKDRSQSG
VETVFQSVFPIHDTQNRLTVEYIDSEVGKPKYTVRECMERGLTYAVSLRM
KTRLILWDRDENTKEKLGVKDIKEQSIFVRDIPLMTERTSFIINGVERVV
VNQLHRSPGVIFKEEESTTSGNKLIYTGQIIPDRGSWLYFEYDPKDILYM
RINKRRKVPVTIMFRALGYSKQDILKLFYPIQHINIVDNKFLMSFNPNDY
SSRLTYDLVDKNGKILLASGKRLSAKKAQNFIDEGLSEVEYPLEVLLDRY
LAKPIVDPETGEILFDAMTRIDETKLKKLSEIGVKNFSIANDLAEGVDGS
IINAFNADADSLKLLKQTEDIEDENHLSAIRIYKVMRPGEPVTKEAAKVF
VNQLFFDPERYDLTKVGRMKMNHKLGLNIPEYITVLTHEDIIESVKYVIK
VKNGQGHIDDRDHLGNRRIRSIGELLGNELHNGLIKMQKAIRDKLSTMSG
PMNELMPHDLINSKMITSTIMEFFSGGQLSQFMDQTNPLSEVTHKRRLSA
LGEGGLVKERAGFEVRDVHPTHYGRICPIETPEGQNIGLINTLATYSKVN
EHGFIEAPYKVMKEGKVTDEIVYLTATQEEGKKIAAASNKLDKDGQFIDK
MVVTRVDGEILHRPVTECNYADLSSHMVVGVAASLIPFLEHDDANRALMG
ANMQRQAVPLIKHEAPIVGTGVEKLVARDSWECVKARRSGIVEKVDGKHI
YVMGDDDGEIYIDYYPLQKNLRTNQNTAFGQKPIVNIGQRVEIGQVIADG
PNMDQGELALGVNAMVAFMPWNGYNFEDAIVISERLIRKDAFTSVHIYEK
EVEARELKHGVEEITRDIPNVRDDELSHLDESGIIKIGTNVTGGMILVGK
VSPKGEVKPTPEERLLRAIFGEKAGHVINKSLYCPPSMEGVVVDVKIFTK
KGYDKDARTLELEKEERDYLEREHYDRLLMIDKEEMLRVTKLLTKEPLIN
DIKIGNTSYKAGDIINGEDLVEVNRFAMNAIIKSFSEEIQSEYNKTKNYF
QKEKRLFRDEHEEKLNILEKDDILPNGVVKHVKIYIATKRQLKVGDKMAG
RHGNKGIVSTIVPEVDMPYMEDGRGVDVCLNPLGVPSRMNIGQILEMHLG
MAGRELGHQITKEFESKQKDFIKNLRAKMIEIADVAQMMNAAKTLGDMSD
ELLLHHARDWSRGVKFASPIFEGVNAVEFEKLFALAKMDTDGKTVLYNGL
TGEKIKERVNVGYMYILKLHHLVDEKIHARSTGPYSLVTQQPVGGKALFG
GQRFGEMEVWALEAYGASAVLKEMLTIKSDDVDGRVRAYKAITKGELVPE
SGIPETLFVLTKELQSLALDVEIFDEVEDNE
>Tmden_0242 HipA-like-like
MKLNQTEEIILNIVTKEQEIVASVLIAITQMNPRTVQRALKKLAEYGLIE
ALGTTKDRRYKRIYNKDEAPHQYIVFNSGEKSGKLSFGNGEYTFVYENNY
KGEEFEGLKKSSTNKSSELFAFFENLIPEYERREKLLQGKEDLGLVLEEL
SNSHGALDFIPMSEVHKYVSNYGKRASWVSVKNEILQDNNFPNLLDFELL
IDDDILDAESNTEHSDLSGFQTKIDVEIDFKNKQIKESDSAEYLLKPRNK
KKHNYFHVDDDGKKRHFPYIAFNEHLFMSFAKNELGFNVPYTAIIKAKDI
DYHYITKRYDRYKGLKYPQKDFAQVLNILSKNKYKSDSQTLFEAINKTLM
NKEQKLEALRFYYYSYLIKHADLHLKNIAALNIGNNKYILSPLYDLISIG
IYNGDAYDIGLGMKSPYKKPKNWNINDFYTLGSAIGIAPIAFKKEARKIT
KIFLQKMPQYIKKVQEFEKIHPLPMQQTRDSKSSATFSKRLTSMFENKII
QLKKSGIIQELELVQEAGGLLNAEKN
>Tmden_0348 NusG antitermination factor
MEKKNSHQWYSIQTYGNERTVRLAILNLIEEMRLQDFITDVIVPTEDVIE
VKDGKKKISERSLYSGYVFARIELNTEIQHIIQSIPKVSGFIGEANIPTP
LSEHDINVILDRVQNRAAPKPKVFFDNGETVRITDGPFANFTATVDEYDL
EHGTLKLNVSIFGRATPVDISYTQVEKII
>Tmden_0406 DEAD/DEAH box helicase-like
MNVTKEQKEKFKKLGISSCSELSLIIPSLYEDLRLSNKLSPHSMQLIDAT
VEAIYRAPNSLQITFFVHNFSHTVTGVIFRPKPYLLHQFKVGQRDYYYGM
MECKGGTCSINMPKKITIIGAITPKYKSALRSDVMLRFVQNLLTKENLLL
DGLREDVACELLKLHFPQSVIPNIKELDEKILRALKYTELFVYMRELAKK
RRYYPSLSLTCKSYDEWLQTLPFRLTNEQIKAIEDIRADFQKGLSARRMI
VGDVGSGKTMVILASALMNSPNRSILMAPTTILANQIYEEAKKYLPMMNI
ALVSSKNKNMDLSEYDFIIGTHALLYRELPIATLVMVDEQHRFGTAQRNL
LEKLVSSQNSSSKISDAKSHFLQFSATPIPRTQAMIEMAHIDVSLITSTP
FKKEIKSRVIHKSDFKELLEHIKVEIALGNQVLLVYPLVEQSEVLEYQSI
DEARSFWEARFTNVHVTHGKDKDKEEVLREFDKQGDILIATTVVEVGISL
SRLSTVVIVGAERLGLSTLHQLRGRVSRTGLKGYCFLYTNQNKSERLDKF
VDTTSGFDIANLDLKFRKSGDLLRGHNQSGNQFRWVDLAEDEEIVKLVKD
DLLK
>Tmden_2024 Ribonuclease III
MSKNIEALEEILGYKFKNQKLIIEALTHKSHKQPYDNERLEFLGDAVLDL
IVGEYLFFKFASSDEGTLSKIRAALVNEDGFERLARSINLGEYIYLSNAE
ENNGGREKASLLSNAFEAMIGAIYLESGLDIVKPIAIGIIERNYQEISLD
SLFRDYKTTLQELTQARFGETPEYIVVASRGPDHKKEFEVAVIIEGKEYA
RAIGKSKKIAQQEAAEMAVKILKGDV
>Tmden_1409 ParB-like partition protein
MKTQRLGRGLGELLGEIDEAYENEVPQKDSIVEIPLKDIRPNPYQPRKHF
EESSLFELGESIKNDGLIQPIIVTEDVDGYVLIAGERRLRASKLAKLKTI
RAIVLNSDEQKMRQFALIENIQRDELNSIELAHAYGELIKLHNITQEELS
TKIHKSRTHITNTIRLLQLSQKTQRALIEKKITTGHAKVLVGLDEKQQQL
IVNSIIGQKLSVREVETVIKSMKNNNNETKKESEVTLYDFKAIKDRLLQL
GFIAKSSNKNLTIEFKNELQLELFLQNISK
>Tmden_0086 hypothetical protein
MKFSRGLYALLLTLFFNSSLVAQYLYKDELIFNPAFNVEIEKLGSELYEK
TGISLRLVMLKKLPDSKNIVEYEEQLLAEFDKPTILLTFSQMDTKVDILA
NETSLYNYFDKKQILSPVASVVQAFTIALFYSDSFAMFKEIISDYGGTII
PLLAQKSKDNELLGKYSGSMFNGYADIADQIASSKGVVLENSVGSANQQS
IFVVKVLFYGFVLYGIYMYIKRKLYLRKQKNETK
>Tmden_0152 transcriptional regulator, BadM/Rrf2 family
MPLISTKGSYGLAAICELSKRKENSPMQIKEIALNANVPQNYLEQLLGKL
RRAGLVESIRGAKGGYILARPPQDIKILDILMALEDDLKIVDTLVEHPIL
KLFFEDASESVKSIFNINMMELSAYQNKFLNYNI
>Tmden_0024 hypothetical protein
MSNYEITIKHNKHRIHPCPNDKKLSLLALLLEQNSTLNILVASSQDRELI
KEVAGAKNVTVALDDELTKAADLMCDLLISYDLPSAEIYMSRLRRAKEGA
IILLDISEQKNLYPIETILKRVIRQDTVLGYEYAPQEKMKIAQKSLQKEK
GVYAFDPDAPQKPLYSKKQTEYKKTFDKPKYDKSNWDKPKRDNEGSERKP
FEKPKYDKPKTDGQRAERKPFDKPKWDKPKFDKTKNDTQGPEHKPFDKPK
WDKPTRDGEKSERKPFDKPKYDGEKKYDKSGKKSNKFLGKDDSGKSKFSG
KSGERNHKYDGKPKESIEAPKNVGRKISIKERKPKDAPSS
>Tmden_0891 response regulator receiver sensor signal transduction histidine kinase
MDEKQTILIVDDKEENIGTLNKLLQKYNLLSASDDKDAIEILFGENEIDL
ILLNITMLKSDGCEVCKTLKNSPKTYHIPIIFLSSKHTQEDIQKGFDAGG
VDYISKPFHPDELLSRVSTHLALRAYEKNLECRVQEEIQKNKFKEQMMYQ
QSKQAALGELLMHISYQWKQPLASLLSITKKNRQKILSLDSFDKDDFLES
LKKSKDILEFMSETIDTFQNFYKPSYDTKEFSLSDTILEILTIVEGTFYF
DDIKIYIISHERDTVFGNQNEFSQVVFTILNNAREIFKLRDTINPEIHIS
VNNKKVSISDNGGGIRGESFDNIFSYDNDMNNELHLGLYLSKILVEKNGG
VITAANSKNGATFTIEFLTWM
>Tmden_0282 response regulator receiver domain protein (CheY-like)
MKNIVIIDDESDILNMLERHLSRDSEYKVKTFSNPINAIASLPKDTDLIL
LDIMMPQMNGLDALPKLLEVNPKTKVLMMIAYSTLDKVLNAHRYGATDYV
MKPFASLDVLSKKIKEVLRKN
>Tmden_1792 hypothetical protein
MGINIRKATSADASFLAQMILQSTRADKKIGVFDLIFKLNNDEEILKNLE
KLTNTTAKSNCHFSNFLIAEIDGKSVGSLASYEPRLITKETFMSALEEIG
INAEESEYFGLMEICGFALNSRTLVFDYMEELEGFMDVGILKALMQKSLL
TARLKGYRIAQTIVEIGSLETLLYYKKLGFKEVRHKDCEPYKEIFGRPGL
VLLSIEF
>Tmden_0354 DNA-directed RNA polymerase, subunit beta-prime
MSKLVPIEVTEDRRPTDIKQIQFRLASPEKVMSWSHGEVKKPETINYRTL
KPERDGLFCAKIFGPVRDYECLCGKYKKMRYKGVVCEKCGVEVTSTKVRR
IRMGHIELVTPVAHIWYVSSLPSRIGTLLGIKMKDLERVLYYEAYIVESG
GEAYYDAEAKTPVLKYDVLNEEQYRTLVSRFGELGFKARMGGEVVRDLLD
SIDLVDLFTQLKEDIELTKSEAKTKTIAKRLKVIESFLNSGNNPAWMMLT
VLPVLPPDLRPLVSLDGGKFAVSDVNDLYRRVINRNQRLKRLVELEAPEI
IVRNEKRMLQESVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRFRQ
NLLGKRVDFSGRTVIVVGPSLSMDECGLPKKMALELFKPHLIAKLEDKGY
ATTVKAAKKMIEDKTNEVWECLAEIVDGYPVLLNRAPTLHKLSIQAFHPK
LIDGKAIQLHPLVCAAFNADFDGDQMAVHIPLSSAAIAEAKVLMLASMNI
LLPASGKAIATPSQDMVLGIYYITLEKNGVKGSNKLFANVDEVRIAIEHD
ALDIHAKVRTRDDGRIIHTTAGRMLLKAILPNFVPSELWNRVMKKKAINE
VVDYVQKHGGIGVTAGFLDRLKNLGFKHATEAGISISIDDIKIPAGKEAK
IAESKNRVFEIQKQFEAGLLTEQERYNKIIDVWTDTNNTLATQMMDLVQT
DKAGFNSIHMMADSGARGSAAQIRQLAGMRGLMAKPSGEIIETPIISNFK
EGLNVVEYFISTHGARKGLADTALKTANAGYLTRKLVDVAQNVKIVEHDC
HTHEGIEISDISDQNTLIESLEDRLNGRVLADDVIDPISNEILFAEGTLL
DEVSAKVIAEAGIKTAYIRTPTTCKSENGICALCYGVNLATGQIVRRGEA
VGIIAAQSIGEPGTQLTLRTFHVGGTASSTAQERQVVAEKEGFIRYYNLK
TYVSKEGRNIVANRRNAAVLLVEPKIKAPFSGRVEIQTVHDEVIISVSSK
TDTIRYVLRKNEIAKPNELAGVGGQIEGKYYFPYESGAEVQEYESIVETI
KDGWNVPSRIPYASEVLVANGAPVTQKIFAKEDGVVKYFLLRGDYLERFE
GLKAGYEVIEKGLFATVVDSNNREAVRHYIARGSIIVAEDDAVVDPKTLI
AKPKNDESTVIAEWDPYSNPIISETSGTVKFEDIIIGTTATEQYDELTGK
TRLMISDHVPAEYKPTIVLASEDGELLRYQVQSKTSIYVEDGAKVKVADI
IAKTPKALQKSSDITGGLPRVSELFEGRRPKATALISEIDGVVSFGKSLR
GKIRIIVASDNGILKEYFVDKSHTPVVNSGDFVHAGERLTSGIISSHELL
RIMGVKTLYNYLVSEVQQVYRSQGVNISDKHIEVIFTQMLRQVKILKSGD
TKFIEGDLISKVKFAQENEKIIKLGGRPAIAEPFLVGITRAAVSADSIIS
AASFQDTTKVLTEAAVSAKVDDLNDLKENVIIGRTIPVGTGIYKDQEIMF
GYN
>Tmden_1858 transcriptional regulator, MerR family
MKYKVSQIVKLTQTPKSTILYYIREGLLPEAKKLKSNVHRYSDIHVEILE
YIRYMKQEMGSSNEELKTMLKNKNSSLSSSFSMIAPMMQTLENIPKNAKH
YTKEEFLNEYNIEREFLEELLKDDILMPLGSDDFTQKEASLIKLVKNFQE
MGVEHNILSEYVAHAKALAELEYKMQKNLCAIRDDDNFQTLWKIMFETLF
GAKEYIHKRSTHKVLYKALKEEISKK
>Tmden_1566 Transcription-repair coupling factor
MSQSRLFNYYKTTKKSDLEILLCEDAKEAQELKSVALFFGKEVIVFPDFR
ATHGDDLRVYKEELHQLFSSLRNYYSAKVKPLIISPLKTLLFEMPQESLL
KSRVIEFGEKIEFRAFQQQMLLWGYNFVDMVQVEGEISFRGDIIDIYPPS
SKMPLRISLFDNEIEQIKYFELESQRTQKEELESFELTPAFFSLDESEFD
MLNERVQKSEFDSLVKDIASLGLWHLDDSGVNFLESKNVKLSRELNAPLI
DAYALNKPTISRECFNVEVLEESDDFKEISVSDLHAFLKVHKAKKTTIIA
SNEAVIKQAGLFDVSGLKILYAPYILNIMGKDELVISLNKQTKIKRRRKS
SILLDDLKVGDYVVHEDYGVGIFEGIEQTEILGGVKDFIVIKYIGDDKIL
LPVENLDAIDRYIASGGSVPVLDKLGKGSFGKLKESVKKRLLEIAGQIVN
TAAARELITAPKINVDEDELRAFQKLSGFLYTDDQSQSINEIITQMSSGH
IMDRLLSGDVGFGKTEVAMNTIFAAYKSGFQSALIVPTTLLSAQHYRSLH
ERFDALGIKCSKLDRFVSAKDKTNIIKALSSGDLDVVVGTHTLFDLDFKK
LGVVIIDEEHKFGVKQKEKIKELYHNVHLLSMSATPIPRSLNQALSSIKT
MSQLLTPPSQRQPVRTFVKAYEEKLIKEVLLREIRRGGQIFYVHNSIDHM
PIKLGELKALLPSLRVVMLHSKISATDTEKELLKFEAGEYDLMLATSIIE
SGIHMPRVNTIIVDGADRFGMADLHQLRGRVGRSNVEGFAYFIVNDKETL
TDEAKKRLLALESNSFLGSGSVLAYHDLEIRGGGNLVGDAQSGHIKNIGY
SLYLRLLEDAIKLLSNQMEVEKAKVDIKLTISAFVSDEVVKEDRLRIDIY
RRLSSCIDSVEIYEIQEEVIDRFGALDAPTKQFFELMVIKVLSLSKGIKS
VSNYGQNITITYMDEKKESIKSDSKDDDDIIKAVLKYLRA
>Tmden_0814 hypothetical protein
MHSLVLKVDDGFYTQLLSFLNQNKRQVNILEDIEDDGFPAISTDEAKQRV
SSAVEEYRSGNMKTVPYSQGMDEIDKWVNNL
>Tmden_0531 two component transcriptional regulator, winged helix family
MKNYLIQIIEDDSSVKKLLEITFREHNLNYISCDNKKNAMMLFLTHSSDL
LLVDLGLPDGDGKEFIREIREISKVTIVVLSARDDEKEIVAALDAGADDY
ITKPFSVNELLARIRANLRRSISGENISSKITCAELEMDIASRDIFFKNE
QLKLTPIEFELLKYFLLNANKTLTHKQILKEVWGVGYQSEMQYLRTYVNT
LRKKIEQNSTRPTYIKTESGIGYRFCCNN
>Tmden_1148 sigma-54 (RpoN)
MAQLRQTQSVENRHKLSNTLRNWLPILHSSLSDLGEAMSPFIDANPIIEI
SSGFEDSFEKLIPKKIGNSSVANTRTEQIEALTFVKKSLYDVLDEQIEAP
LFPTPISQKIASFVVCNLDENGYYEGDSEEFCKNNAITIEEFEKVRLRFA
HVEPVGVCAKNLLESFLFQLDSSDISDKVYPLAIKVIKDLENIYDYSNEA
GFSEVMRVLTTFKNPPAIEYLEESAQVIPDLMIFFNDNDSIEVKLNDAFY
PIINIDTSYSIEHDYVSQKIKEAKSLVDALDMRKATLYKVGLMIVEYQYE
FFTGGAIMPLTLKTLADEFGHNPSTISRAIANKYIACDRGVYAMKEFFTT
AIDEDVSNAAIKEFVIGVIKSENRKKPLSDMKLLELIQDKFKVQMVRRTI
AKYRKQLNIAGSSERKKLYHLH
>Tmden_0749 two component transcriptional regulator, winged helix family
MEGIVLVEFKNFCVLYAEDDLEVQANISKILSLLFLKVHVASDGEEALEL
FKKNNIHIIITDYEMPRVDGYKFILKIREMSQTIPIVVLSSHTQKEKLMN
CIPLKLIEYLEKPIIYEKLLQTLKKCVKEIKNSADVEVMIGEDIFYNIES
NHIQKNAKTLKLTALEMRAFEYMFSKKNILVSNEELGFYVYDSHDYSVGA
IKNIIYRLRKKLGREFMQNHKDIGYILKSL
>Tmden_0937 hypothetical protein
MTTLSTKKQVAKFLGVSTSTVSKYIEDGRFTEEIDYFYNHDGKEEFIPEG
IIKFKQELKHRKYEVKKVEKTLNPIASKFLNNRKVVSNG
>Tmden_0141 DEAD/DEAH box helicase-like
MNNAKEFSNLNLTKEMLHNLNEIGYTKMSDIQEQSLPFILDGKDVIAQAK
TGSGKTAAFGIGLLHKLQVKKFRVQALILCPTRELSDQVARELRVLARFS
HNIKILTLCGGVAFGPQLGSLRHGAHIIVGTPGRILKHLKKDTLSLEDVD
TLVLDEADRMLDMGFSEEINEVLEFVPKNRQTLLFSATYTDEILDISKSI
QNGAIHVKTTSTEIANKIEERFYEVNNADKIKTVIDILSNFRPQNVIIFA
NTKVEVDEIAKRLQESKVDALAIHGDLEQYDRNDVLVQFANKSCPVLVAT
DVAARGLDIKELSMVINYDLPHSLETYTHRIGRTARAGAEGLAFTLYSAY
EEEKVDEYKNDNRIFESSKTLKTVSGFVMKPQNITLVIEGGKKDKVRAGD
ILGALTGEAGLSGSSIGKIDIYDRQSYVAIEASKIDEAHDKLKSGKIKGK
KFSVWIL
>Tmden_1146 Superfamily II DNA and RNA helicases-like
MSEKSIKTTKKYYDYVSVGNRTAQMAYFVQQHDKNRMFEELLKTLQNMQI
IVLVKSKRNADEIMRYLNTKEIKSISVHGNHRVAQIEDAQKSFNSKETKI
LITTDRILEKLTPMEVHVVVNYDLPLEASDYFKALLLVDEIGQSISLIDP
EDEGMLATIELMMKCEMAEVEMKHFEHTARETTTPKERINKPRHKKVEQR
AKKKAEIKSKWVPSK
>Tmden_0564 hypothetical protein
MISQLNSAGVRTAYANSFGEAKEASQKGTLSVSKQGDTSKVEQIKDAIAS
GEYKINLQTLSQKIAQELL