Gene list
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COG category: Transcription
Organism: Thiomicrospira denitrificans ATCC 33889, ATCC 33889
Number of genes found: 89
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| Thiomicrospira denitrificans ATCC 33889, ATCC 33889 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | Tmden_1365 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 1437024 | 660 | + | 0.321212 |
| NA | Tmden_2024 | Ribonuclease III | RecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; | chromosome | CDS | 2105865 | 681 | - | 0.38326 |
| NA | Tmden_0531 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 530863 | 690 | - | 0.33913 |
| NA | Tmden_0964 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 1005476 | 777 | + | 0.306306 |
| NA | Tmden_0935 | transcriptional regulator, LytR/AlgR family | SubName: Full=Transcriptional regulator, LytR/AlgR family; | chromosome | CDS | 975967 | 699 | + | 0.341917 |
| NA | Tmden_1056 | transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 1120643 | 618 | - | 0.315534 |
| NA | Tmden_0719 | metal dependent phosphohydrolase | SubName: Full=Metal dependent phosphohydrolase; | chromosome | CDS | 739518 | 2148 | + | 0.332402 |
| NA | Tmden_0234 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 240717 | 252 | - | 0.31746 |
| NA | Tmden_0086 | hypothetical protein | SubName: Full=3-dehydroquinate dehydratase; EC=4.2.1.10; | chromosome | CDS | 92144 | 705 | + | 0.31773 |
| NA | Tmden_1504 | cold-shock DNA-binding domain protein | SubName: Full=Cold-shock DNA-binding protein family; | chromosome | CDS | 1578310 | 219 | + | 0.383562 |
| NA | Tmden_0610 | DEAD/DEAH box helicase-like | SubName: Full=DEAD/DEAH box helicase-like protein; | chromosome | CDS | 617837 | 1299 | + | 0.3495 |
| NA | Tmden_1924 | response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase | SubName: Full=Response regulator receiver (CheY-like) modulated metal dependent phosphohydrolase; | chromosome | CDS | 2006674 | 1104 | + | 0.355072 |
| NA | Tmden_0625 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 638509 | 654 | + | 0.35474 |
| NA | Tmden_0354 | DNA-directed RNA polymerase, subunit beta-prime | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 352228 | 4512 | + | 0.361702 |
| NA | Tmden_1559 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 1633207 | 675 | - | 0.339259 |
| NA | Tmden_0436 | transcriptional regulator, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 437744 | 903 | - | 0.326689 |
| NA | Tmden_0315 | transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 318668 | 312 | - | 0.294872 |
| NA | Tmden_0749 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 774979 | 693 | + | 0.295815 |
| NA | Tmden_0317 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 320521 | 675 | - | 0.351111 |
| NA | Tmden_1880 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 1959697 | 672 | - | 0.361607 |
| NA | Tmden_0009 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 12601 | 675 | - | 0.297778 |
| NA | Tmden_1011 | response regulator receiver domain protein (CheY-like) | SubName: Full=Response regulator receiver domain protein (CheY-like); | chromosome | CDS | 1065640 | 309 | - | 0.333333 |
| NA | Tmden_0502 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 505848 | 477 | + | 0.331237 |
| NA | Tmden_0225 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 236216 | 264 | - | 0.367424 |
| NA | Tmden_0837 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 869079 | 810 | - | 0.262963 |
| NA | Tmden_0725 | transcriptional regulator, BadM/Rrf2 family | SubName: Full=Transcriptional regulator, BadM/Rrf2 family; | chromosome | CDS | 748712 | 402 | - | 0.380597 |
| NA | Tmden_0937 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 977588 | 270 | + | 0.318519 |
| NA | Tmden_0327 | DNA-directed RNA polymerase, alpha subunit | RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; | chromosome | CDS | 328481 | 993 | + | 0.332326 |
| NA | Tmden_2016 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2098994 | 843 | - | 0.303677 |
| NA | Tmden_1553 | transcription termination factor Rho | RecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; | chromosome | CDS | 1625005 | 1344 | + | 0.37872 |
| NA | Tmden_0804 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 834315 | 711 | + | 0.274262 |
| NA | Tmden_1148 | sigma-54 (RpoN) | RecName: Full=RNA polymerase sigma-54 factor; | chromosome | CDS | 1203954 | 1269 | - | 0.349094 |
| NA | Tmden_1458 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 1530045 | 657 | - | 0.343988 |
| NA | Tmden_0718 | RNA polymerase Rpb6 | SubName: Full=RNA polymerase Rpb6; | chromosome | CDS | 739289 | 219 | + | 0.315068 |
| NA | Tmden_0247 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 262552 | 681 | + | 0.32746 |
| NA | Tmden_1242 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 1309760 | 684 | - | 0.304094 |
| NA | Tmden_0135 | Competence protein ComEA helix-hairpin-helix region | SubName: Full=Competence protein ComEA helix-hairpin-helix region; | chromosome | CDS | 139311 | 1974 | - | 0.391084 |
| NA | Tmden_0675 | Protein of unknown function DUF448 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 688688 | 264 | + | 0.318182 |
| NA | Tmden_0236 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 241524 | 1158 | + | 0.291019 |
| NA | Tmden_0543 | Exoribonuclease II | SubName: Full=RNAse R; EC=3.1.-.-; | chromosome | CDS | 545955 | 1950 | - | 0.362051 |
| NA | Tmden_1976 | putative transcriptional regulator, AsnC family | SubName: Full=Transcriptional regulator, AsnC family; | chromosome | CDS | 2058400 | 999 | - | 0.348348 |
| NA | Tmden_0208 | response regulator receiver domain protein (CheY-like) | SubName: Full=Response regulator receiver domain protein (CheY-like); | chromosome | CDS | 210856 | 1695 | - | 0.307375 |
| NA | Tmden_0282 | response regulator receiver domain protein (CheY-like) | SubName: Full=Response regulator receiver domain protein (CheY-like); | chromosome | CDS | 300396 | 366 | - | 0.308743 |
| NA | Tmden_0814 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 846136 | 246 | + | 0.345528 |
| NA | Tmden_1534 | GreA/GreB family elongation factor | RecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; | chromosome | CDS | 1607014 | 498 | - | 0.35743 |
| NA | Tmden_0024 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 29605 | 1023 | - | 0.357771 |
| NA | Tmden_0546 | GreA/GreB family elongation factor | RecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; | chromosome | CDS | 549170 | 525 | + | 0.350476 |
| NA | Tmden_1096 | putative phage repressor | SubName: Full=Putative phage repressor; | chromosome | CDS | 1155237 | 660 | - | 0.337879 |
| NA | Tmden_1146 | Superfamily II DNA and RNA helicases-like | SubName: Full=Superfamily II DNA and RNA helicases-like protein; | chromosome | CDS | 1202556 | 648 | + | 0.334877 |
| NA | Tmden_0403 | NusB antitermination factor | RecName: Full=N utilization substance protein B homolog; Short=Protein NusB; | chromosome | CDS | 400433 | 399 | + | 0.37594 |
| NA | Tmden_0947 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 987320 | 1341 | + | 0.346756 |
| NA | Tmden_1105 | sigma 28 (Flagella/Sporulation) | RecName: Full=RNA polymerase sigma factor RpoD; AltName: Full=Sigma-70; | chromosome | CDS | 1161640 | 1872 | + | 0.346154 |
| NA | Tmden_1858 | transcriptional regulator, MerR family | SubName: Full=Transcriptional regulator, MerR family; | chromosome | CDS | 1942180 | 681 | - | 0.330396 |
| NA | Tmden_1631 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1713419 | 243 | - | 0.308642 |
| NA | Tmden_0348 | NusG antitermination factor | RecName: Full=Transcription termination/antitermination protein NusG; | chromosome | CDS | 344910 | 540 | + | 0.327778 |
| NA | Tmden_1439 | transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 1506131 | 591 | - | 0.311337 |
| NA | Tmden_0664 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 679389 | 714 | - | 0.344538 |
| NA | Tmden_1748 | NusA antitermination factor | SubName: Full=NusA antitermination factor; | chromosome | CDS | 1831858 | 1143 | + | 0.363955 |
| NA | Tmden_0141 | DEAD/DEAH box helicase-like | SubName: Full=DEAD/DEAH box helicase-like protein; | chromosome | CDS | 145563 | 1374 | + | 0.377001 |
| NA | Tmden_0564 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 566973 | 210 | + | 0.366667 |
| NA | Tmden_0891 | response regulator receiver sensor signal transduction histidine kinase | SubName: Full=Response regulator receiver sensor signal transduction histidine kinase; EC=2.7.3.-; | chromosome | CDS | 921474 | 1116 | - | 0.31362 |
| NA | Tmden_0955 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 996583 | 699 | - | 0.27897 |
| NA | Tmden_0242 | HipA-like-like | SubName: Full=HipA-like protein-like protein; | chromosome | CDS | 254763 | 1581 | - | 0.321316 |
| NA | Tmden_1759 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 1842463 | 663 | - | 0.346908 |
| NA | Tmden_0888 | putative transcriptional acitvator, Baf | RecName: Full=Type III pantothenate kinase; EC=2.7.1.33; AltName: Full=PanK-III; AltName: Full=Pantothenic acid kinase; | chromosome | CDS | 919550 | 618 | + | 0.339806 |
| NA | Tmden_0258 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 273371 | 654 | + | 0.331804 |
| NA | Tmden_0353 | DNA-directed RNA polymerase, beta subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 348090 | 4146 | + | 0.357935 |
| NA | Tmden_0133 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 137994 | 753 | + | 0.371846 |
| NA | Tmden_1566 | Transcription-repair coupling factor | SubName: Full=Transcription-repair coupling factor; | chromosome | CDS | 1639261 | 2973 | - | 0.378406 |
| NA | Tmden_0621 | transcriptional regulator, AraC family | SubName: Full=Transcriptional regulator, AraC family; | chromosome | CDS | 633531 | 876 | - | 0.342466 |
| NA | Tmden_1409 | ParB-like partition protein | SubName: Full=Chromosome segregation DNA-binding protein; | chromosome | CDS | 1475007 | 843 | - | 0.314353 |
| NA | Tmden_1430 | Hydrogenase accessory protein HypB | SubName: Full=Hydrogenase accessory protein HypB; | chromosome | CDS | 1494594 | 801 | - | 0.388265 |
| NA | Tmden_1288 | putative transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 1360240 | 375 | + | 0.298667 |
| NA | Tmden_0706 | sigma 28 (Flagella/Sporulation) | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 720192 | 684 | + | 0.349415 |
| NA | Tmden_0134 | GCN5-related N-acetyltransferase | SubName: Full=GCN5-related N-acetyltransferase; | chromosome | CDS | 138753 | 552 | - | 0.360507 |
| NA | Tmden_0555 | transcriptional regulator, MerR family | SubName: Full=Transcriptional regulator, MerR family; | chromosome | CDS | 560909 | 378 | + | 0.328042 |
| NA | Tmden_1767 | DEAD/DEAH box helicase-like | SubName: Full=DEAD/DEAH box helicase-like protein; | chromosome | CDS | 1849066 | 1623 | + | 0.390635 |
| NA | Tmden_0587 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 594707 | 735 | - | 0.292517 |
| NA | Tmden_0123 | Protein of unknown function DUF814 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 128614 | 1326 | + | 0.350679 |
| NA | Tmden_0884 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 916355 | 657 | + | 0.316591 |
| NA | Tmden_0968 | response regulator receiver domain protein (CheY-like) | SubName: Full=Response regulator receiver domain protein (CheY-like); | chromosome | CDS | 1013544 | 954 | + | 0.303983 |
| NA | Tmden_1505 | GCN5-related N-acetyltransferase | SubName: Full=GCN5-related N-acetyltransferase; | chromosome | CDS | 1578596 | 417 | - | 0.318945 |
| NA | Tmden_1991 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 2073076 | 690 | + | 0.337681 |
| NA | Tmden_1945 | DEAD/DEAH box helicase-like | SubName: Full=DEAD/DEAH box helicase-like protein; | chromosome | CDS | 2028819 | 1236 | - | 0.400485 |
| NA | Tmden_0152 | transcriptional regulator, BadM/Rrf2 family | SubName: Full=Transcriptional regulator, BadM/Rrf2 family; | chromosome | CDS | 154426 | 405 | - | 0.340741 |
| NA | Tmden_0025 | DEAD/DEAH box helicase-like | SubName: Full=DEAD/DEAH box helicase-like protein; | chromosome | CDS | 30766 | 1197 | + | 0.365915 |
| NA | Tmden_1792 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1874707 | 624 | - | 0.325321 |
| NA | Tmden_0406 | DEAD/DEAH box helicase-like | SubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; | chromosome | CDS | 403259 | 1815 | + | 0.360882 |
| NA | Tmden_0533 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 532534 | 498 | - | 0.345382 |
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