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# Carboxydothermus hydrogenoformans Z-2901, Z-2901

>CHY_2567 DNA-binding response regulator
MARKILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLI
VLDWMMPEMSGIEVLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYV
VKPFSLRELSARIKTILKRLEAKTINEEIVLTEGDLTLYPHKREVFLKGK
PLDLTPTEFKLLEAFLKNPGKAYSRLELLEYAIGEAYEGYERTIDTHISN
LRKKIEKDPANPEYIQTVFGIGYKLKPRGEKDENHG
>CHY_0677 transcriptional regulator, MerR family
MSPGKTFFTIGDAAKLIGVVPATLRNWEKAGLVKPGRQNGNYRIYSLKDI
ERLKKIKYLMRVKGFNIVGVKEYLAAQGEELPAEPVKIEKKGPRIAVGQK
LKALREKKGLTLEEVSQGTGVSVSYLSRIESGQVNVSIATLQKLATFYEK
NLLYFFEGMDTKEQKLVRAGLGQVLETDEEGIKVELLTALNEPAMEPLLY
TVAPGAGRNENISHEGEEFVYVLKGVLEVWLDETERYVVGPGDSLYFKST
QQHRWRNIGDEELVALWINTPPTF
>CHY_0143 RNA polymerase sigma-70 factor
MDRFLEKWQKARKSREGMEELLNYLRPLIKKAAQRYRNPYLTEEDLMQEG
MIAVIESVYRFDPERGVYFLKYVREMVYGRIYSLLRAEKARRGKEVPLEE
YHIEVQHFAEELPTINFPPGVLTPRQESLITLKYERGISLSEVAKILKIT
PAGAYDLEKRALNKLKKYYLSLKTK
>CHY_2408 putative dissimilatory sulfite reductase subunit D
MEELKQKIIDYLKTVDKAKNKEVAQALGVSKGEVDKAVTELAKEDKIEFL
YLGTSYIKLKT
>CHY_1908 DNA-binding protein
MSGINKIKKLREERKMSRKELADKLQISYWALSKYENNERTPDITLLRKI
AQEFGVSIEYLAGLSDENLLPSTSPVIQKILQLPPEALNEIDLFVDFLNY
KYKLKAK
>CHY_1376 sigma-54 dependent transcriptional regulator
MEQAVMANPDFFIADNKGLSQITDLVLAQKMREELLKILDSLQEGIEIAD
EKGEIKYINQAFTRITGIEKEERIGKNIFEVSPYGALAQAIKLMKPVIGH
RTLVGGSKAEVVSNAVPIFIDGKLSGGAVVFQTVTDILKISEQLSKTQEM
LESFSQKLSELSGCRYTFNDIIGKDEKLLEAKKIAKKAAKSDATVLLLGE
SGTGKEMFAQAIHMESSRSSKPFVKINCAAIPENLLESELFGYEKGAFTG
ATKTKMGKFELAHQGTIFLDEIGDLNLFLQAKLLRVLEDKQFERVGGIET
ITTDVRVIAATNRDLKRMVKERKFREDLYFRLKVIDIELPPLRKRNKEDI
LLIAENIIGRLNRRFGKKVKGLTPKAQELFQNYPWPGNIRELENLLERTI
ILVDDEYLDEHHFYGYFSKANEPPVLEKSFPIKKLGDIEKEVISMALEKY
GRSLSAKKMIAEKLGISLASLYNKIKRYNL
>CHY_2030 transcriptional regulator, TetR family
MAKKTPETEIKQKIYLSARKLFVEKGYHRTSIPDIVKDAGVSIGAIYHHF
SSKEELARVIHEDAVESFLSRYQLQVETKATAKEKVRGFVEMMFNWADED
LITVNYLLHARPKEILDCNFTICTAEGLEAVKKIVEFGQKEGTFKDTDPI
LLAAFISGPVMRIIELKTDGIITQPLSSIIDTTVQLIFDALKK
>CHY_2344 transcriptional regulator, CarD family
MFKVGAKVVYPMHGAGIIREIEERLAADRVMKYYVLSFWATNMILWLPVE
KVERVGLRPVIGKDMVEKVFAVLKEGEEKIHSNWNKRYKNHVDKIKSNDI
LAIADVVRDLRRREKVKGLSTGEKKLLESARQILVSELILVLEEDEEKVL
AMIEEAITIT
>CHY_2218 DNA-binding response regulator
MITAVVVDDEPLAREELKYLLEETERVEVIGEADSGEELFEVLRDRKPDV
VFLDIEMYGLNGLDVALELLKEKDPPLIVFATAYDQYAVKAFELNALDYL
LKPFSAERVKLTLEKIEEKLRDKEIYKQKMWQSIQAIAPQQKVFIQTADK
ILPLKREEIYFVEAQGRYARLRLKNKWVMCRHSLSELEDMLGEKNFVKVH
KSFLVNFEQIKEIIPLFGGGLILRMGDDGASEVPVGRTFLKSFKEKIGLN
I
>CHY_1359 sigma-54 dependent transcriptional regulator
MAINPINHLSLLNILDSIHNAIVAIDEEGKVIIFNKASERVFNYPAKKAL
GKNINEVLPFSGLNKVLKTGESHIGRKFKIGDNLYVVNRTPLYYKGKIIG
AIGVAQEINELKNIADELENVLALKQTLETILEAGQEGYMVLDLDKTVTH
ANKAIADLFGLKLSDIVNKPINSLTANPFFCELPESADDIKTEVVEINGR
QVVAFKYPIVKDYKLYGGVIKVIFQEVSDLLALAEKVNQLNSELSYYKNE
LTKYTSKQFTENKIIGNHPSIVRLKEIIKKIAPYNTTVLIRGESGTGKEL
VAHALHVESGRPGSFIKVNCAAIPENLFEAELFGYVEGAFTGAKKGGQIG
KFELANNGTIFLDEIGDMPLTMQAKLLRVLQEKEVERLGDRKTRKINVRV
IAATNQNLEELIKKKKFREDLYYRLNVISLYVPALRERIEDLPLLIKYFI
EKFNKEYGTNVTGISPEVMDIFMNYSWPGNIRELENVLERCFNLVEGKVI
EKKYLPPYILGEELKNKEFPLGQSLTNLLEAYEKELIKAALLKAKGNKSK
AANLLGISRQWLHKRLKYFNLLP
>CHY_0434 transcriptional regulator, GntR family
MNFQQIKTKKIYEEIIEQIRLLIARGELKPGDKLPSERELAESLGVSRAS
VREALSALEVLGVLEVRPGEGTFVREVAADKSFHSLTLLLLLGTTLEVLE
VRKILESGAVVLATERATDEDIKRLEDAVVKMEKDLKQGDLGDEADFMFH
YGLALATHNSLLVRLMNSIADTMRQSLKINRERLFRTPGMPEIFYKYHKE
ILEAIKARDKIRAQKVLEEHLTVAEEKLLEE
>CHY_0013 transcriptional regulator, LysR family
MNRNQLEIFRVVAEKKSFSEAARLLHISQPAISMHIQALEEYYGTKLLDR
TTKRVTLTPAGEILYKYTLHLLSLMDKAQRDISQAAGIIKGKLILGASLT
IGGHVLPPLLSSFYRKYPDVNITMEIMNTEKVLERVSDLTLDLGFVEGEV
TTGELHVEALARDELVVVVAANHPLAGRGRISWEELATLPLVMREPGSGT
RKVIEERLQAAGFKLPELKIVMELGSTEAIKGAVEAGLGAAILSKWTVRR
EINWGIFKQLLIENLPIYREFYVVLNNNKFHSPATQALIQFCREHLS
>CHY_2097 peptidase, homolog
MSFKVVHTFFLYALFGPLFGYTLLLLIGKRLLKNNSYFWSEILTIPLLIP
VLAVIIYWGKPCPLLTLANPPLKFIGGFLCFLGDGAAKYFTPVFIFAAFY
GLHEIIRPYFTFNRFLKAHRLKKDEQLNGILAELKEKMGIKKEVFCYLAP
GNITIFTFKFDKPVVIVGEEYAKRLDFEELKAVLAHELAHIKANDSLIIS
LCQFATYLYFFVPGLKKYFEKILLFRELRADKVALGYLGKKEPLASALVK
TYKFGANASWIGFALDLGGDFEIKRMQAIIESDLKIPRRNFTYFAVMTLI
VSLSLIFLYFIC
>CHY_1098 transcriptional regulator, ArsR family
MDFLLAELAEIFKALAHPTRLKVIYYLKDRERCVCEFIEEFSLEQSNISQ
HLAVLKRAGIVSSRRVGLNVHYRLTNPKFVELVDLLKDIVIEETKKESEN
LLKGEDFNA
>CHY_0788 sigma-54 dependent transcriptional regulator
MNEQWRRFISGEDPVSSVDPLILRSWKRCREKVVDYQRVINNDILPAPLL
RERWQKQEELLKAAEQVLPHIYRLLQGQNYMVILCDSEGYILKAIGDPPF
LNKAQKVYLSPGANWREDIKGTNAIGTSISEGTAVKVLGWEHYVQENHFL
NCWAAPVYNSEGKMVGVLDISGENGRSDNRLLEIALMGAKIIEQNLLLQE
LQKKVVISQQGLQLAGKMLQEGVIVIDNQGIITEINQKGAQILGKRREEV
IGNLISDVLGSAKSFSLSPKEEKFQINAGLGEKIGDKRFDTVYALNRAGQ
NVIEQHRWVGNSTKSKQVLEIVAKAAAVNLSVLLQGESGTGKEVIARYIH
QLSDRKNGPFIAINCAALPPNLIESELFGYVEGAFTGAKKGGQPGKFELA
NGGTIFLDEISDMPLNVQAALLRVLQEREVCRIGDNKVRKIDVRVIAATQ
KDLQQLVNDGLFRLDLYYRLKVITINLPPLRERKEDLYELVPYFVNKACQ
SMGKPLLSVDREIYSYFLAYHWPGNVRELENCIYSMVALATGSQLTVADL
PVELRQNLESVQADSSSLLEQKTKLAILEALKQTNGKIAPAARLLGMGRT
TLYRKLKKYNLLK
>CHY_1413 DNA-binding response regulator
MKTILLVDDEEKIREVLRLYLEKEGFLVLEAQDGKEALKRFSEHKIDLII
LDLMLPEIDGMEIAKEIRKTSLVPIIMLTARGEEIDKILGLEIGADDYVV
KPFSPREVVARVKAVLRRSSGIPEKEASSVIKQGILEIHPEAREVKVNGE
EVVLTPLEFDLLLYLVTNRGKALSREQLLANVWGYDYFGEARTVDTHVTR
LREKLQEAASYIKTVWGVGYKFEVKNGD
>CHY_0116 transcriptional regulator, MarR family
MEELLHRLAAVFKFKEEWQLEKTGLSSQELFVLEHLQEGEKFRFGQFARK
FGLKPSTLTGIIDRLEQKGLVMRKRDEKDRKAVYLVLTDKGRELVAEHFQ
EDREFYQALLKNLTYREKQQFLDLLTKILPADLGELLPGGEEK
>CHY_0401 rrf2 family protein
MQLTKQGEYALIALMDLAKLPKGQVVPVKTLAERLMLPEAFLAKIVQSLV
KAGLVYTVKGPQGGVALLKDPEKITVLEVVEAVEGPIVLSQCINHPDICE
KVEICPLHKIWHKVQQKLIEEFSSHNLLTLSKEGQLSGFLAE
>CHY_1254 sigma-54 dependent transcriptional regulator
MEITVNIVLIAPYKNLLEIAIEVKKDFDFAFNLELGDLSEGVKIAQEWEK
KGADIIISRGGTYQLIKEAVSIPVVEIKVSPFDILRQFKGLIGYSEPIGV
AGYMNVIYGSEVIGEVLNLNLIKIEIKKETEALFQIAEAKEKGAKIIIGD
TIGACCAAQLGLKSRLIISGKEAVANALSEAFRLAEAIKSEKEKTEQIKT
IVDFVHDGIIAVDKDGRISIYNKMAEKIFKKLPSEVIGKKVETVIPNTRL
YEVIKTGKPEIGKIQEISGTMIATNRVPIVVGNEVVGAVATFQDVAEIQN
MEQKIRRRLADKGLIASFKFDDIIFISDKMKDVVNQAKKYALLDSTVLIL
GETGTGKELFAQSIHNASERKNGPFVAINCAALPENLLESELFGYAEGAF
TGARKGGKAGLFELAHKGTIFLDEIGEMPMGLQSKLLRVIQEKKVMRIGD
DRLIPVDVRIICATNRNLIEMINEGKFKRDLFYRISILQIHIPSLRERKE
DIEVLVPYFIKKYSLICKKHIQGITSRGMELLKKWDYPGNVRELESIIER
ACAICEGNIIDVRDIKLYNDQDSMENKVSSQSFLEIKPLDEIEKEYIKKV
IKFTDGNLSEAAKKLGISRTTLWRKLKNFN
>CHY_0507 acetyltransferase, GNAT family
MEVTLKNGQKVKIRKVSLEDAEELLAFYKRATNETTFLAYGPGEFNFTVE
QEREFINGHLQNKKALLAVADCRGRIIGSVSFKPGLGTQFSHFGEMGIAV
LQEFWGLGVGWALISYLKKWAKDNGVRKINLNVRVDNKRAISLYEKAGFT
YEGRISRHYLINGVFYDSYIMGIEID
>CHY_1865 putative transcriptional regulator
MLEKLKALGFSEYEAKAYLALLNLGEATGYEVAKNSGIPRSMIYQTLNKL
IEKGAVQKIQGEPVKYLAEPPPEYLERLKEEFSLKISEAKKALEALTPPG
AKERVIHLNGEQIAGRIREMLQKATKNIKLLASMAMVLPYQELLENARQR
QVAVELTLIGKGEELQEFDPVILTPEKTVLKKRGSLGFQLIIDDDELLLA
EEGGENETIGIWTRHPVVVHLAEHHFFHHHDLPKLFNAFLSEIEPEVKEH
YWKKIKELQQKLEL
>CHY_0549 hypothetical protein
MSEKEMVLVEVNPSEIVYLDFLLEGFNGLGIGHTLDPKIARVAIYTTSSM
KAELISTLKKLPINVTLIGEE
>CHY_2529 hypothetical protein
MKRLFIFIIILFITIFIFNPVKTGELKKTPLKSRQKEQTTGITLAVPLSV
KEGIKNYIAPSAEPTPPAHFCPNQNILLLWTEKGGLKAITIITYNPRTKI
PALLTVPTRTLLPGETLTTGEIYARKGLSTFTRTLEKAFNTQIPHYIVID
QTVVEQFSRRLGEVNLKGETVPVISIFEDTLAGRRLNDTDLVKALVQKLL
LPGEMWKVPGHLSFLVQNIKTNLTLPVLLDIFSKLPAMKLNSLTKVSLPS
PGVTGRILSQITQESLP
>CHY_1317 hypothetical protein
MLFVFSLNIQLSPSISFLTLGYGNYNVGSKHLPFLCAISKLRKQIEKEKN
AVEMIRDPVALDYWLAKQSKFLAIDGIEVVALSLNNPLIKEPGGGVIGSP
FKKLQPARGEIEFLKSDIGILTFPEGPGVALIGIDKSDFENFRKELGKLK
EVKYNFCRILDLIEKTKVKTALFISDGCGLVETGGGFYIRKFNIRKFFFL
PWGRVSGEYELELYVWQC
>CHY_0892 conserved hypothetical protein
MILTERRKQFLEKLIDLFQKTNVPVHYETIANALGVSKWTAYDVLKELEK
LGYLTRDYTVNPNEMGRSQVVFMPTIKAINLFEEKRTKEINIDEWNKIKT
KVLELLNSLKTHSISDAVQKMLEEIPKVQVRVTFGAYVIGLFIVYLRKLG
GRTEMLVKSLVQNAPTSEMRIIIFIGTVLGTIIQTMNHEIGVGVTELVGR
YLKSLTDLSDKEKGMLADFLVEALA
>CHY_2210 conserved domain protein
MGLTKRKEQFLAKLRELYDKLKFPVSYQILAEEMKVSRWTAYDMLRALEK
EGLVIREYLLEKGKSAPGRSAVGFIPKIKQKMVPKDIEEELLRKIREVKT
KSLSGVLKKMKEELASENTPFVYCSTFLAYLTVVLHKVNIKELARFPQIW
PQKPVEFQLKQLPGFILGLLHINERGQKEIGKIKKSLGKFTACIENLALE
EAKALLLLLEAFHREVRT
>CHY_0212 putative stage II sporulation protein E
METKIYPFARRKSNVKAPEVKRPRKKLKLSDIIFPVLAFSLGRASLAGDL
YPFGPAFLGAAVAYLGLGEAFFLFVFLLLGQIFIIPERYIIYKFSQLLVL
FILAGILLKNLNFKKKTVVLPLVVFCVVAFFGVYFDKAFSGTPLDFIKIG
LDASFSAILSVVFFLAFPALKGGPGKIVTGEELLPLMFVIGSALIGFPGF
FLGPLEVKQTIIHLTVLLTAFSGGPGLGAAGGAVLGVILCFGNGLPLENI
GIYTFAGLLSGIFRQFGKIGALIGFLLADVVLAFYLQSLSAAKGLAYQML
AASGIFLLIPNRYLDGLKEMLDSVTKKFQLFMNQPREIARERMNECRELF
LDLGNSFLELSATLGPEVIPEFRIEEVVERFPKDTCQNCTFTRLCWEREF
FGTYHALLEMLTILENKGQLFKSDVPGFFYKRCLRIKEFLNELLFTFLME
KEKSRWQKKLYEEEQLTKSQLKGVGEIFLELNKALDLDFVYDQKNTVKIF
KRLWEENLPVETVLAKPTGGRGMVVEVKSARCSGTKPCLNKIPVILREET
GGEFVLQQKRCGQTDGGECHLNYLPMEDLEGRIGIGMAGKTGEKVSGDSY
RVVRYSPGKLAVMLSDGMGSGELARRESSACLLMVERLLSFGLSPSKALE
AVDALIRLKNRQERYLTLDLALIDLISRQVTFYKRGAVTSFLKRGAVVEK
ITGENLPLGSGIELKPREKRQILFPGDILVLMSDGLLEALGGEERVVKIL
LEDNDLSPEILAEYFLAHAKLRHQNVITDDQTVIVVRFFEKTRSERVVR
>CHY_0446 transcriptional regulator, GntR family
MLRKVDKHSGIPAYIQIGNMIKAEIILGNLPQGAQLPPVRDLQYIFDVNI
NTVLKALDKLKNEGFIEAEQGVGYFVKKDISVEEEIIKTVKDCIQKIKAL
GIDFYTIMLIFEEVWKNESSPDA
>CHY_1845 putative RNA polymerase sigma-W factor
MDVKLIPIIVKAKNGDDRAFEILVHIYYQKVLNFFKGKLQDEDIALDLTQ
EVFVKVLLNIKKLKMAENFETWLFTIARNELNHYLRKKQKDKHIFQKILD
KPPGEVSFSLEKSEVEELLKELPEKYQTALKLFYFEAKSIKEISLITKNP
ENTVKSWLYRGREILKSLLLGGNKND
>CHY_2009 conserved hypothetical protein
MDDIVGRVSYLQGLAEGINLKEKGKEGEIITEIIDLIADLTEEVRSLRDD
QERLEEYVETVDDDLYELEDAVYDDDEEFTYVTCPECGERVYFERELLEA
DDNYEITCPNCGALVLVSEFIENRREQALNQQNYDDVI
>CHY_0189 transcriptional regulator, GntR family
MGRLKPIILDNYKPLRELVFETLREAIINGVLKPGERLMEVQLAEELGVS
RTPVREAIRKLELEGFVVMIPRKGAYVAGISLKDVADVFEVRAALESLAA
GLAAERITDEEIEELERVLVQQQSLAESDRLEDIIRADTDFHEVLYRASR
NERLIQIVSHLREQIQRFRTASLSQPGRLRLALEEHKEIVEAIAERNVEK
AQALAREHIENAEQSMINGLKERGELIGD
>CHY_1862 DNA-binding protein
MEINTKAIGQRIREEREKLELSREEFAEILGLSDYYVGQLERGERQMSLP
VLVNIAQCLHVSLDYLIFGSTPFEPSGVQENISFYNFLQNLDPELLSLLS
KCSHDELELFKKLIKTILPYLGKKPVP
>CHY_0628 transcriptional regulator, LysR family
MNLNQLEAFCNIVEQGSISKAAKLMHLSQPALSTQIAALENQLQVKLMER
TNRGIELTEAGETLLYYAKRICNLVKNLNEEIERLKNLEEEELSIGAAST
IGGYALPCSIYIFQEKYESARIKLTIMNTEKVIEALLDRQIDIGLVESNI
ESNEFISSHLTYDELVLVVPNNNSYKNKEILTLDELRTLPFIIREKGSGI
RQTIEKALAEKGLNISDLNIVMEVNSIDAIKVAVESGKGVSLLPRFAVKK
ELRTGSLKSIKVKDISLLHPFVAITLKNKKRSLLEKKFLAFINSPKERGF
C
>CHY_0059 transcriptional regulator, LysR family
MEFRQLEYFYAVSKLNSFTRAAEQLHVAQPSITIAINNLEQELKVQLFDR
SKRKVVLTDEGKLFLQHVEKILKDVKKAQSELEDLKNYKKGVIKLGIPPM
IGAYLFPKIFKGFKNAYPHLELHVREEGSWAMVSLLENGELDLGLIILPE
QSENLCMLPITKDQIVLCVSENHRFSQEKRISLRQLEDEQFILLKEDSYT
RHKIIALCNYYGFSPNILLSSCQIETIKELVSNGLGITFLMNGITKKWDK
IVSIQLEEPMNITIGLAWQKDRCLSRAAQAFIGFVQNYTKSKEFAEIINL
ET
>CHY_1343 putative serine/threonine protein kinase
MGITIKEVSRISGVFGQQGEEKVAEVLKEHLPDGYKIINSYRLNYQGDSW
DIDHIVIGPNGIFVIETKNMRGRVFGGAMGNWWQEKWAGGQKEKIKIGNP
AAQVNHYAKLVKEFLRLYFPEEETRILVYPVVVFAHEEADFSKLRFTRPG
RIGKTKILSLYELPAFILSREEVSYDSDFIDKAINFLIPEDEREKTGMFK
TGLYYQNLQEQFSRRYRLEDLIGEGNFSKVYWAYDNKLDREVAVKEINLT
DLPGDIKDKIYNEAQLMAKINHENIVKLYDTFYFDDKIYLIIELVQGKTL
VEYLEEKGGMLSVKKAVNIMIQIAKALSYIHQHNIIHRDLKPENILISTD
DIVKITDFGIAQLNEEEKEEGFILGTPVVMAPEQILKTGIDQRTDIFALG
CIFYYLLTGHYPFSGTNFSELSYNILHFDPEPIRTYNSHCSLEIEKIILK
CLEKNPENRYQKVSELLQDLIKYQEQKNLGLFFNKKTFLKIALVVLGIAF
LYLFTLGTSMQNQGSAPISLNEILNKEQITLTNDNFNQVFANNYLAGAKV
KITGRILDIIGAQNGRTLCYFLLEPASLKDNKLTIALNLDPFSIFNGTKY
YQLEGFLAYSPLVENGAAKPVVIVERYKPLEPWHLFDPPIKTVEVKQTLK
RKDKEIIFEKIEFGKNETRLFITLRNLSNHPVNFNLLEPRASQKDRFYVE
ALYQNRDYPKLKDQLGPKEIVRGIIVLEKMDYQIKEAVFFLGLTMAGEEP
YIFHVRWGDENTGN
>CHY_1114 transcriptional regulator, MarR family
MIDLNDNVGKYISFTWRNMISYMAKKMEPLHIGAGQYAYLFSLYFKDGQS
QQALSDRLLVDKAATVRAIKKLETAGYVERRPDEQDKRSFRIFLTKKGKA
IRPQLEAIVKEVQEILLEGMSPKEKAIIKRLLQQMASNIIRANRGSF
>CHY_0606 DNA-binding response regulator
MYKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVI
LDLNLPKQDGFSVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLT
KPFSPAELMLRIKAVLRRYRKGRGEEEILKYGKVAVNLKTREVLKNGEPV
ELTSKEYALLELLFKNPNRIFTKEQIMDRLWPDTFPEDPNIVSVLVRRLR
EKIEEDPSSPRIIKTVWGVGYKAEKI
>CHY_2126 hypothetical protein
MRQARIRELFLQHTGQELTSKQITELLNFPLSAERTIRNDIKELIKQGFP
IEILRRGKYLFRGRKTSYLRKDLRFGSDDIRQLWLLAIVAEKREVKVPEL
YKELEKKFKEFEQEIGFSYETLQNDFKELAAHGFLLKKDEVYQLGKKFLP
IYRHRIKKELNEVIRELERKYRYMQYNPLLSEVLNKLKAYRNTFIYTIDT
HIEEYFEERRKIRYYHGPRELVDETLIMIKNEISRALFEEKKIKVTYKGK
EQFFYPLGLVYNQNNQAWYLIAKPIRKREAAKKLRVDRIEQLEVLEEPIP
KEVETCVKAMVAPGWGIGTGRKEKVKVLFYNRANTIDRVKPILEVRKIVH
PTCNYYFDSAGNLIFEDYISGIEEFLSWLRQFGADALIFEPASLIEKYRE
TLKKLAELYPEVQADE
>CHY_2370 puatative transcriptional activator, Baf family
MFLAIDIGNTNIVLGIYDKGKLIKTWRMAADRNKTVDEYAVLIHNFFSFI
NLSFKDIEGIGIASVVPPLTPIFEQLCYNYFKVKPLVIGPGVRTGLKIKF
ENPREVGADRIVNAVAGYHIYGGPLIVVDFGTATTFDAINDKGEYIGGAI
SPGIGISTEALFARASKLPRIELVKPLSVIGKNTVSAMQAGIIYGFIGQV
DEICARMKKELGGAAKVIATGGLAELIATDSRQIEKVDQNLTLEGIRLIY
ERNQAGN
>CHY_0257 transcriptional regulator, Sir2 family
MEEAVKMLLTARHAIAFTGAGVSTESGIPDFRGNSGLWEQYPVEKVASRR
ALMENPAFFLNFYRERFKSYANVKPNRAHEALARMEKAGIIKGIVTQNID
GLHQKAGSKNVIEIHGTLKRVRCDRCGKYYLPEKLDEEEVPRCNCGGVIR
PDVVLFGEALPRREWQIALELAERSDLVLVVGSSLVVTPANQIPGLVLLE
GGKAIIVNKDPTPLDDQALVLRGYAGEILSKLADMLGV
>CHY_1870 acetyltransferase, GNAT family
MKIIPIDETIRKEVFNFFTEHWGAPIMVAKGKVHYVDKLPGFVALDEGRI
VGLLTYHIEDGECEIVSLDSLKENQGIGSKLIDCVLSEAKKQGCKRVWLI
TTNDNLKAIRFYQKRGFNMAALYLNAVKKARKLKPEIPLYGFDGIPILHE
IEFEKILE
>CHY_2446 rrf2 family protein
MEEEMNLTQATDYAFRAVLYLARKGNGEVVEAQEIAGRENIPLRFLLKIL
RQLGQAGIVKSYRGVGGGFSLAKDPEEITLLDVVEAVEGPVKINRCLIDP
QYCTSQRGGRCAIHQELSLIQNDIIARLGTVSFKKILEREQNL
>CHY_2052 conserved hypothetical protein TIGR00244
MRCPFCGNENTRVIDTRAAEDGFAIKRRRECENCSKRFTTYERLDDRPLI
VVKKDGSKQLFDKHKIYTGLLKACEKRPIAESKLLEIAEEIERELKNRLE
QEVTSLEIGEMVMSRLKKLDEVAYVRFASVYRQFKDVNSFLEELKKLLNG
GENS
>CHY_2622 transcriptional regulator, AbrB family
MKSTGIVRKVDELGRVVIPIELRRTLGIEEKDALEIYVDNEKIILKKYEP
ACIFCGNAANVHHYKGKLICTDCLKALSEEAKAI
>CHY_0092 DNA-binding response regulator
MKKVLIIEDDRSIAELERDYLEVAGFLVEIAVNGDQGLKKALEEEYDLIL
LDLMLPGIDGFEVLRKVRAEKDTPVLLVSARREDIDKIRGLGLGADDYIT
KPFSPSELVARVKAHIGRYERLTGGRKNQDLLEFPGLVIDTAARRVFAGD
KEVNLTGKEFDLLLFLAKNPNRVFTKEELFERIWGMDSLGDLSTVTVHIR
KLREKIEKDPSNPQYIETIWGVGYRFSGLWPIRD
>CHY_2125 hypothetical protein
MNSREFKELIKVINFHAAMEEISLEDAALLLGVTEDSLRSFLNEVSAHEF
LNEFSGIFIDEDGENEVVICEGYGLKIPVLQLSSEEKTLIVQEAGETGEK
LLKIFARKIRKEEKDWVTKTAKTYTHKRIPGVTISQEQQEIMQKIETAVY
EKLKIKITYAISEESKNNTVVFNPAGLVYYKHDGFWYLVGFEEQKFYKPE
IIRIDRITGVLFEQKKAEIPEGFQIESFFKNRWGMDAGEEVKVKIRFLPE
ANVIEKAQRELKARGFRGLKFLEDGSLLWEDKVTGVSDLLFWLRSFGSSV
EVIEPRELRREMVESIKRLMKVYEVK
>CHY_2200 rrf2 family protein
MRLSTRGHYGLKAIYDLALHYGEGPVPISEIARRQMISEPYLEQLFSVLR
KAGLIKSVRGAQGGYLLNRLPEEITVGEVVRVLEGPIAPVECVSENVKEA
CDQADACISRVVWAKVRDALNKVLDSITLKDMIEEAKKNQNQNLMYYI
>CHY_1768 conserved hypothetical protein
MAKQKKIPMRMCLGCQEMKPKKELIRVVRTPEGEVLIDKTGKKAGRGAYI
CPSLSCFEKAKKGKKFEKALNHPVSPEIIEKLQQELTESEQS
>CHY_0010 stage 0 sporulation protein J
MKNKKGLGRGLNALIPEGKINLERENGLVEINVEKIVPNPKQPRTIFSEE
ALKELAESIQKHGVLQPIVVRKIAEDKYELVAGERRWRAAQLAGLKQIPA
VVKDFSDEEATVVALMENLQREDLNPLEQAKALKRLIEEFGLTQEEVAEN
LAKSRTYVTNLLRLLNLPPVIQEMVEKGELTYGHARTLLALDDPLKMSEV
AREIIKEGLSVRATEELVKKIKNSPEVKVRTKRQVAPEIQEIEDKLRAFF
ATKVEIKSTAKGRGKITIEYYSPEELQRILDLLYIE
>CHY_0658 DNA-binding response regulator
MKIRTLIVDDEYPARQELRFLLAEIPEIEVVGEAATASEALALIRAVDYS
LLFLDIEMPGLSGLELAKEINALPHPPYVVFVTAYDEYALKAFEVNAVDY
LLKPIEPKRLKKAVEKVKKLIQENGLPKGEEVFSAYRTTGRLDRIPAEKG
GKTVLVGEQEIIYAYTEQDYVYLKTYQDKYFTRFTLKELEGRLNPTVFFR
CHRCFIVNLQKVKEIIPFFNGTYTLVVDDKEKSEVPVSRAQAKKLRKILG
L
>CHY_0715 helix-turn-helix protein, CopG family
MASLKKVVVAVPSNLLEEVDKTAALEKISRSEVVRQALKLYLDEKKRKML
REEMIKGYKEMAKINLNLALEGFYYEADGYMEVK
>CHY_0229 ATP-dependent RNA helicase, DEAD box family
MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGT
GKTAAYLLPVLQRIQRGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRA
LAVYGGQAIERQIRGLRQGVEVIVGTPGRILDHIGRKTFPAAEIKIVILD
EADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPAPIKTIIKKFLGGYK
TVKLVGREKTVPAIRQVYYELPETEKIEGLVSILNSELPIQAIVFCRTKK
RVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAA
RGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKL
LKAIEEAINKRLKREILPEPVDLEEARFKKIAKKILDTITKGVPALYLEM
AARLLEEEESEQLLGATLYLLEDRSLQNDF
>CHY_1519 RNA polymerase sigma factor
MQPNNPINDEIFEQMIRQHESLIFGIAARLTGRFITKSDDEYSIGLLALS
EAIQSYNSAKGVEFEKFAAQIIRRRLIDFYRQNKSYQQNLPLDESFLSQR
NLIDEVDVRLEIAEYEKLLKQFNITFAELVKVSPKHNDSRQKLIMLAKGI
AEDEEFVRQLIRTKKLPLQSISERFKIKQKTIEKYRKYLVAIILIYWGRF
TGLQAYLGWGGE
>CHY_0512 transcriptional regulator, TetR family
MNPKIRAILKAAAKVMAQKGFEKATMDEIAKISKVAKGTLYYYFKSKEEL
FLKLTLSILEELEERTKKVLELKVSAAEKLRALIKVQVEFFLEFHEEVVL
VLGDFFGSTLPRESFRVKINDYYRLINQLIAEGIKANEFREVNLEIFVPA
FFGMTSFATIRGILREKGFLKEQLINNLTEIVLNGLKK
>CHY_1125 response regulator
MRVLIIDDDEGIRYTVGEIIAFMGWEAIKAENGAIGIEKFVREKPDMVLV
DYHMPALDGLDTVERIREIDQGVPIIVLTVDERQQIADKFLEVGASDFAL
KPIKAPDLIARLKVHARMIEINRSQEKKDQDGFLAKGINKKTFNLIVEYL
KEQKEPQTIEEITEGVGLAYPTVHRYLLYMVNEGIVSIECDYGRIGRPKN
KYKLV
>CHY_1547 sigma-54 dependent transcriptional regulator
MRRLQIVTTDKEKCKACYACVRNCPVKAIKIEEQKAEVLEERCIACGNCV
RVCSQGAKKIYSFKEVVLEKIKNGGKVIALLAPSYPVSFYPLKPGEVHGK
LKAFGFTRVEEVTAGVEIILPEYGKYLKETQDYVISSACPAIVSLIEKHY
PTLVNHLAPIKSPMEALAKYIKMEEPDAFLVFIGPCIAKKNEALNFRENY
VDAVLTFKEIKELLKGVNGGDTYEYPRNFTQSFPIPGGLILSLKQRGYEI
ESQRSISVEGKEQIIETLESLTNNRTSGVLFYDLLFCRGCIDGPEIDSEL
TYIERRQYLLELSKGNKTILSKKPAGTFRVRYTVKARKLPLPTEEEIREI
LAYTDKFTPEDELNCGACGYNSCREKAIAVYQGLAEIDMCLPFLLKKTRG
EAEFYRNKYEMENRKKYYLDGITGQTEKIIEVKKLIEKAAMSDGNVLIQG
ESGVGKEIAARTIHYLSERADKPFVAINCAAIPENLLESELFGYEEGAFT
GAKRGGKAGKIEQADGGTLFLDEIGDMPLSMQVKLLRFIQNREFERIGSN
TPRKVDIRIIAATNQPLAKLVKEGRFRMDLYYRLNVFNINIPPLRERRDD
IPLLVNRFMNEFCERRKMAPKIVTSEAMNILMNYSWPGNIRELQNVIERA
YYLAEGNLIKPEHLPAQLTSKALSGERITKITTFKEAVAEVEKKLIIEGL
KATNYNKLACAKLLGIPRATLYQKIKEYGIEA
>CHY_2575 transcriptional regulator, LysR family
MNLYQFELFCQIAKVRSFTKAAKLMHLTQPAISAQVQAMENFYGTKLFER
SATGVKLTPAGELVYKYAQHFLAEHEKLEREIDNLLGTNAQTIVIGASST
IGNFALPCNVWSFKEKYPEANIRIEVDNSKKVIDMVMEDKVDFGLAEGPE
FTHPDLEVKKVGESQVVIITSPELPLARQDSITVEELKKLPLIMREPGSS
VREVFFDAIKKAGVPAKELNIVLELGSFQGVLEAVKKGHGVSISCLEAIK
KEFHRKELHYLTLKDMELTMPFLLVYRKDRAFSPLAKRFLRFIIGPAALE
FC
>CHY_1136 CBS domain protein
MSNTKHAKLLAYIRNLPSGSKVSVRLLAKELKVSEGTAYRAIKEAEAEGL
VKTVPKVGTIRITNIEKKELKDLTLNEIIKITESHLLVGEDLLNYRFANF
LIGAMAVEAIERFLVEGCLFIVGNREDAQLKALQSGAHLLITGGFPVKTE
LLELARENNLAILSSPYDTFTVTSLLHQALYERLKEKEVITARDIMVKKV
FTLSLGQRVRDWRQLFLNTGHSRFPVVDKENRVCGIITATDVAGAGEDEL
VENLMSKDVISASPETPIGHIARVMTWDRIDLVPVVDESFKLLGIISRQN
IIDALQRLERQPHFGETLEDLIIKNFHVGEDENGIFLEGKINDFLINELS
MLSSTVLLSLSIFYANLMVRKKVKAPVVVNNFSLSLLTPLTYGETLVVRG
KLLYLEKRNAKLEIDFYRQSNLNAKALIEVRLIEK
>CHY_1367 C4-dicarboxylate response regulator
MIKTVIVEDDPMVLEINKNFIKEVEGFEIIAALKSGSELLNFLKNHSPEL
LILDIYLPDIDGLTLLKEIRRQNISVDVLAITAAQQGEIVAELLRYGVVD
YIIKPFKKERLVKALLTYKNKYLKIGRKRSVQQEDIDRLFARSSAGGELP
KGLNDITLKKILSLLEETREPLAAAEVAKRAGISRVTARRYLEYLEREGL
AGKEIRYGSIGRPVNYYYLR
>CHY_1745 transcriptional regulator, IclR family
MVLEEKENKSGAPAVEMAIKILTYLSRYRNKNRTLAEIARDLNINKSSCH
RILKVLLDYRLVSYDKNTRQFSLGSFLIVLGSRASEFNDYLKIAKQHLKE
LAETTKQTCVLVEPIANNRLVYIAKEEPEAAVRITVSIGQSFPVTSASFG
KCYLAFLPEKEAREIVKEVGIKQFTDKSITNVEEFFQSLEVIRKQGYAVS
FEEHTPGVFGISAPVFDNSGSVRMVVSCIGLASSVNEETINFYADKVKTT
AQKITAIFSDM
>CHY_1605 transcriptional regulator, TetR family
MAKKSIDKYEAILDAAAKIIGEVGYHKAQISKIAREANVAEGTIYLYFKN
KQDLLLSLFQKRYGEFISNLKVEIAAAKTPLDKLKKLITMHLENSEKDRN
FAQVTQIELRQADRDLRQKLSELLKDYFYIIESVIEEGKEQGIFRKDIST
KVIRRMIFGTLDETVSSWLLSSRRYSLAKLSDDVFQLFCYGIIKQNNE
>CHY_1527 transcriptional regulator, LysR family
MKVEYFKTFITVVNEKSLSKAGKLLNLTQPAITKHLQSLEEYFNTILLER
NVKGIKLTDDGALLYKYAQEILKILEEAEQNISGNKENPKGILNIGASNI
PGQYLLPLLLGRYNLAYPQVKVNLEISDTGDVVAKILDGIYDVGAVGSEI
KNPRLEFVPFYKDELVFILPANHPLTQKEVLEPDDLLKIPLIWREKGSGT
RMFLEKALKNFGISEKKLKIVMELGSNQAVLTAVEGGLGGAFCSEIAVRN
ATKLGLVSTHRIKGLALQRDLFLLYLKRKKQHPLINHFINLALSEFSLLR
R
>CHY_0910 transcriptional regulator, truncation
MHSLDDQARKTLSGAKVIIKYKEEKVIVDAFYEQYQHYFADKTKITLKNY
LTPTEYRLLVFLWENRGRIVSKEVIMERVLADFAGVSDESLKWHLKNLRK
KLRDLGYENIILCHKGYGYSFNKETLFNFEFD
>CHY_1273 transcriptional regulator, IclR family
MKKNNNDTLIQSVDRALRILDTFSLKEKELGVTEIANRLGLHKSTVFGLL
RTLEHWGYVEQNQVTGKYRLGLKLLELGNRVKEGLDLRAVALPFLQDLVE
RYGETVHLAVHDRGEIVYIEKVEGPNAIRMYSQIGRRAPMHCTGVGKAIL
AFRPEKEIEEIIRTKGLKYFTPNTITDPKKLHEELSLIRENGYSLDREEI
EIGLRCVAAPIRDSQNTVVAAISVAGPSIRMTEEKIQELIVSVKEAALEI
SKRLGYQTSSR
>CHY_2091 sigma-54 dependent transcriptional regulator
MGTIKLSLDFEDRVGLVLDVSRVISARNLNIITFQVLPGRMFLEIEKTDK
KTLKQIIDDLKNIPKVLKVHPIEIMPYEQKEQQLRAVLDTVNEGIIAIDS
HGTISICNQSCAEIFGIPVERVIGQNVGKLLANDIPMLKTLKTGESYNNQ
EIIINVEGRRLHYLTSGRPIKDRLGNIVGVVAVLKPMSEVRELVYALTKP
SLNSFNDIIYTSEKMRFVVEMAKKVARTDTTVLIRGESGTGKELFARAIH
LESPRRTKPFVPLNCAAVPESLLESELFGYVEGAFTGAKKGGKQGLLEFA
HEGTLFLDEIAELPTHLQAKLLRVLQEGKVRRIGGQEEIPVDIRIIAATN
RNLEGMVREGKFREDLYFRLNVFPLQIPPLRERVEDIEVLTYHFLNTFAK
RRGIQYFEITENALNKLKAYSWPGNVRELQNVIERALTLADDGVIEAKDI
ILDNPQNTYFVARTLEEAVNQVEKELIERALKQYPSIRQAARSLGVTHTT
LRNKIKKLKLTNKVVE
>CHY_1318 sigma-54-dependent transcriptional regulator
MCGNVNEEGVKKYLKELSNKKNVVPVFVSVFNLKGELLAFYCKVCENCKF
KESPFPLEHELLNMCFNDELKIIVESIIEEVDRLDDLVIKVKTVKISSLL
KKIKELSFLQEELEAIIESSYDGIYVSDCTGKTLRINKAYERITGIKKDE
VIGRRLDELKAEGYFSEIVYKQVVKEKRPVTILQKIKNEKEVVVTGNPVL
DNSGEVKRVVTNVRDISELNMLRRELAEVKEKSKHYQRKIVELQEKLTLF
CQAQQDFKGFIIKSPLMKDVIYKALRVARTDTTVLIIGESGTGKEVIARF
IHFNSLRKDKAFLPVNCGAIPENLMESEFFGYEPGAFTGALKTGKMGFFE
LAQGGTLFLDEVGELPLHLQVKLLRALQTKEIMRLGSTKPIKVDVRIIAA
TNRNLAKLVEEGKFREDLYYRLNVISIEIPPLRKRKEEIIPMAMEFLTRI
NEKYGSEKKFTREVLEILKEYKWPGNIRELENVIEHAYVVSQDEINVEDL
PIHLDSLYGEPGNIALIRKTLQNRENITLDEAISLVEKKLIEDALLKYGT
ETRAASVLGVNQSTISRKIKKYNIDVKKIIEKNNEKELS
>CHY_1696 prophage LambdaCh01, transcriptional regulator, PBSX family
MNKLKQLRKANGLTQMEMAKKLGISESYYCQIENGTRRMSLKTALDIAAI
LKVTPNDLFLPSNFAERQEKHQTKAG
>CHY_1180 hypothetical protein
MPLWHARYQRIIRDKEELLVIKEKLENSVVNMFQKLNAYREKDKENRKKL
FELKNTFEEKVAKLEKEVIEVQEQLKKAEENWQKKEKKLRQELERYSLDL
GFLLNEKESLEKREKELLEEIEKQKEIIKHQENLLKLPVISILCKIVTWW
RTVNLNI
>CHY_1915 transcriptional regulator, AbrB family
MAEVIVSSKYQIVLPAEIRKTLGIKKGQRLHVLVENGSIRLIPSRPLSEM
RGFLRGMDTNIERDEEERF
>CHY_1092 transcriptional regulator, ArsR family
MEKLVNILKALADAHRLRLFLELTKREMGVCEAISLLGLSQPAVSHHLKV
LKQAGLIKNEKQGKIIFYYATPEAVQLLEKELGGFLGKIRKLLETPVKPS
PLREQPDLCEFLGFKKEVCEEGEEL
>CHY_0114 transcriptional regulator, AsnC family
MEREILQLLHENAKLTPKQIATMLGVTEKEVRAKIKELEERKAIIKYHTL
INWEKTEYEPVMALIEVKVTPQREVGFDGIARRIYQFAEVKDVYLMSGDY
DLAVMVEGSSMKEVALFVALKLSTIEGVQSCATHFILKTYKHEGVILDDE
EEDRRLVITP
>CHY_2098 conserved hypothetical protein
MSWLEGEFKPQNKGVAKVLGELEARVMEIIWDLGEATVKDVHQIINQEKK
LAYTTILTIMGRLADKGLLIKKSIGLAHSYTPAVSREEFYNKVAETVVDG
LFEEFAEPAFTHFLKKVENDPQKLAELEKMLLKIKEQQG
>CHY_1697 putative prophage LambdaCh01, repressor protein
MNFGQRLRQLRTERDLTQAELAKLLSIGESTISFYESNKRQPDFDTLIKL
SNFFNVSIDFLLGRTDESNKFIQNTKTIPLLGTIRAGIPLLAEENWIEEI
ALPAGIKADFALQVEGESMIYAGIFPGDIAFFKQSETATNGQIVAAGVVE
ETWKANLKFYVKTNGKAFLRSANPKYKDIEITPQHKIIGIMTGLVRHNPP
SMTDYISLVITKDEFENSWIETIETALSLGMSPIHVKQLIEIQATLSKMI
KPNE
>CHY_2426 RNA polymerase sigma-70 factor, ECF subfamily
MYTKLTFRINSIVKRVDIAEELAQECFARLLREDISSINNPVGWLFKVGE
NLAYDYLRSAREIPLLEGAKTSGINFIDEVELVKEALATLTEEEQKLLLL
REKGYKYKEIAQKLGIKESSVGQKLCRAQARFKKSYLKLSGGE
>CHY_2534 stage III sporulation protein D
MQEYILKRVLKLTYYVLENKATVRKTAEVFGVSKSTVHKDLTERLPALDK
KLAGEIKKILEQNKAERHIRGGEATRKKYKNMAK
>CHY_0141 putative GTP-sensing transcriptional pleiotropic repressor CodY
MLSLLEKTRLLNRFIQRSPQRPEPFMELAEMLGDISNASVYIIGRRKILG
YYERLDLVGLVIYGRDLEARQVEQDFQDWLFSFNQTDHNIKGEDGLTYTV
VPVFGGGERQGTILLVKKGQEEFNAQDLILYEYAATVVGLEILRLNSEKM
EEEARKKAAVRLALDALSYSELEAVKKIFSELDGVEGFVVASKLAEQYHL
TRSVIVNALRKLESAGVIDSRSLGMKGTYIRILNDYFLDKLEIAQQN
>CHY_0550 transcriptional regulator, AraC family
MTVKGNKIRELREERGLTLNELSKKAGLSISYLSEIERGSKKPSLKTIDK
IAKALNVNKAQILETEQLEVSLTLGERIRLIREEKKLTISELAARVGISV
SYLSEIERDTVNPSVATLRRIAEELGVSVADLMGKEHSLGYKLKKLREDM
GLTQAELASQAGVSPGLIGQIEQGKVQPSLKTIEKLAEVLGTTPCYFILE
QTSPEQMLNLMSPELRELLLNPNVQSLLSSICTLNEKELQFILNFIQLFK
KSGVMEE
>CHY_2124 conserved domain protein
MRVKLISFLGTNKYIPCRYKFEEEISSPSYFIQMALVELLTKKFSYEIEA
VIFTTDEAFEKNWLKGEGYPGLVEVFNEYQQRNPKFKFRNVMVPSGLFEN
EIIKIFSKIYNEVEENDNLVFDLTHSFRSLPFLTGIILNYTRLLKNVNIL
GVYYGAFEVLGPVREVEEKYPDVNDRVAPVISLNYFLEISDWVLAADSFL
NSGNAGRIAALAQKGFKSIESPEVKRNNNLLQKIAREINKFSLSIATCRA
LDLAGETRTIEANGQRVILNHKPGIVESLKEMLENAAYDEIPELKPFYPI
INKIKENFKNFTEDVVENINHITAWCLEHDLVMQGYTFLRENIITALCLL
NGFDEKDQNSRELQGKIATTIALEIPEDKWNDEVKQYRDFVYKILSEEAL
VKAYKLLNKVSIFRNELAHCQYTGKDISAEKFKNRLSEHLKEFVNFYQKN
KLNSYKK
>CHY_1400 conserved domain protein
MELKDLLLMALKAERQNYLFLAEMTVKIKHPELRSLFSELQAETLRQIFL
LETLVEEKLSSPPVVKKLISLFRK
>CHY_1868 putative RNA polymerase sigma-M factor
MWQELYRIVYYYLLKLGLSHADAEDIAQEVLLSTYLHLDSIQDGNLKFYV
LATAKNKYIDFFRKNKREFTVPSLGDFDVNNFSEIHQIENKEVLKKAINK
LNLTEQKLFYLKYYLGMTNPEISSLLKISPASVKTMLWRLRKKVKEYLEK
EDEN
>CHY_0225 hypothetical protein
MQRFLVAAFLLQLVLLVTLGGAIGAGPGAFVDKETGIVVKTATPEDTAVS
FYALLEKGRWQPAYKLMTKMSRDMISEADMEASVKQVKIVKSRLVKVFPA
DQKGEFATVGHVRIIQLENQPNEMAIVGIAVLRQNPETRGWEIVRVPNEI
ESVYKDILDLILKTDEKMSREDFAGENLTKEQLTQIKDQIKAMKEMHEAQ
KEALNQQ
>CHY_2591 putative transcriptional regulator
MERVQKKILRKKKRRRKVLLLSLLILLFVIGTAFAYFYYTMKDVFTPPRT
QGDNIAVASEKPGRVNILLLGVDDRHSKNRRERTDTIIFASIDSNLKKVV
LVSIPRDTRVNIPGHGWDKINAAHVVGGIDLTKQVVSDLLGKPVDYYVLV
NFEDFKKVIDTLGGVTIDVEKDMYHADEYPYTINLKKGRQHLNGEKALMY
VRYRSDALGDISRTQRQQKFLKALAEQALQPGTLLKLPKLIPEIIQMVET
DMSTKDLMSLLAFSRELNKDSIITQTLPGYFYNYNGVSYWQADLEVAKNL
VDMLFAGQIEQNIVLGTKEENAGVKIVKKKKTVKTPKTSTTKETYQKKPA
TGSDTYQPNPGNGSGTDGDKATLPPGTSEQTTPPAQNDNQKTIPPPSSDS
TTGGTTYQNGPVGYSPPTEQQPPPLNSIPETTAGETYNSQVSEGVR
>CHY_0209 conserved domain protein
MQIEIRGAEKLSFRERQVVVLKEMGYTNEQVAKKLKINVSSVATLYNRAK
SKGYQVVIVIPGDHLGLFDPGDEGEEE
>CHY_0839 conserved domain protein
MATKGYKREHGLTIEQLNAVELLVMGKTDKEVAEAVGVNRVTVTKWRLYD
PYFQAELNRRRKEIWGVAVDRFRSLLLKALNTVEKALNEGDTRTAVEILR
MAGLDMTKGGGTLGTYLVGETEAEKILEELAEAKKREETFKAFSVADWEK
KSVLDELEELARRLERLQTRTGT
>CHY_2398 transcriptional regulator, LysR family
MLHSQLVIFKVVAETKNISTAAKRLHMSQPAISLQIQSLENEVGVKLFER
SNKGVRLTKAGEIFYQKVQDIIDKIHEAYELARDAGGESKGKLYIGATLT
IGEYVLPKLLAYFYKLYPEIEMRVKIANTDTIYHELVEKTIDIGLIEGTI
DDEELKVEKFWEDELVVVVPYHHIWGSKERLPVAELLKERIILREEGSGT
RKVLEIALKELGLDLNDLNVTMEFSSTQAIKEVVAAGLGVTIISELTVRR
DCDLKMFKKLSILEAPIRRPLSFVLTKSTAHEKQKQLFINLLRNNELVAK
LISQDICDYVQPV
>CHY_1706 transcriptional regulator, MerR family
MTIAEVSKKFGLSPDTLRYYERIGLIPRVNRNESGIRDYTEEDCKWIEFV
KCMRSAGVQVETLVEYVTLLQQGDKTIEARKQILIEQREKLLSRIKEMER
ALERLNFKIEEYETKLIPAENELKRLAPNS
>CHY_0813 transcriptional regulator, MarR family
MNINEELKQKLTEELVRTVIQFKKGDGFHGQRFGIKKSELILLATMREMC
GEGIDGVKVSDLSQRLNITPAAVTHMLNSLEEGGYIERLRDAKDRRIVIV
RPSAKGKEILEQGKKEILKRFSGLVEYLGEKDTSELIRLLNKASYYFREV
AR
>CHY_1494 fibronectin/fibrinogen-binding protein
MNYLLLKAVVEELSQAIIGHRVDRIAFTDNLSILINFFHPKEKEKFLYLS
ANNDLAAIFLTKTFFTSSKTTTPFLNSCQNFLLGKRLFKINLEPWERNVC
LEFLDPKTNDKVYLFVEIMGKHSNLILVNHDQTIIDGIKRYGENQSRYRE
VLPGKPYIPPPQPEVLLIHQLTLEKFQTLFLKNPNLTLGEIFKKNIVGLG
NLLLNEVFFRCNLNVKTPSRELSSKQIEDLYFTLISLTKKEPKPVLYYKE
GIPYYPAPFEFASLENLAKKPGTANEVCEEYYLYFRELREIENLKNSLSA
KVAKKIKNLQERINELKAKVKEYSNAEQFKNFGDLLLTYKQHITKGSSIV
KLPNWDGQEVEIPLDAGKSAVENAEFYYKKYHKAKNGLISAQNQLNFALE
ELDYFKTVQFQIDDAQTLEVLEDIKQELGLENNIKVKKVKDKHLDFLTFT
TSSGLKVFVGKSNRQNDYLTFKVAKDNDIWLHAKNIPGAHVILKTDGEPD
QQSLLEAAVIAATFSRARYGKNIPVDYTLRKHVQKPAGAKPGFVIYRQEK
TIYVDPDLSLLHFRLPGLTTGTPSAQRGQFSGK
>CHY_0859 transcriptional regulator, ArsR family
MKEKAPVCKVTLFDEETVQTIRQNLPGEETIIELSEVYKSLGDGTRLKIL
LALKEKESCVCDLAAALSMSQSAISHQLRVLRNVRLVKYRREGKMVYYSL
DDEHILKILQEGLNHITHK
>CHY_0924 transcriptional regulator, AraC family
MLLPSLTPDKEFDTEKAKILYYDFVKPVKATYYSKNYLRICTILEGKKQV
SINELERVEYTKENFAILAPNSKVDLNIENKTKALVIEVDNNVVNQLIER
IQFELGYEEIKKITNYFFLCNFTEEMLETYKRIVRTLNSQEKGKEFLLDL
YIQEMLYEILKFRGAKEIINSVKNARINNILSYINESYHKNIKVADIAKI
FGMEEYEFCRYFKTYTCKTPKEYIKELRLKKAKELLQYQSVTETCYEVGY
ENISYFIKEFKKAFQMTPKQYQKEAKNNKKDGMDPPT
>CHY_1694 putative prophage LambdaCh01, transcriptional regulator
MKGDCSNIYKIARKNAGLTQEEAAEMLYVSVRSLADYESGKTIPPDDVVE
RMIEIYDAKYLAYMHLKNSTKIGRRYLPDISLNDISRAVLKLQKELNDVE
KINPEIIEIICDGEIDEDEKPRWQRITKEINEMAGAALTVVFSG
>CHY_2047 DNA-binding response regulator
MKILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALEIVKKELPDLVIL
DIMLPGMSGLEVCKNIRNNEKTAEIPIIMLSARGEEVDKILGLELGADDY
MVKPFSPRELVARVKARLRRLEGREGKKEGIIKIKDIVIDQEKFAVYVKG
KKMDFTPKEFELLKLLASNPGKVFTREYLLEKIWGYEFLGDTRTVDVHIR
HIRQKIEDNPADPVYIETVRGVGYRFGEEKK
>CHY_1981 argR, arginine repressor
MKIRRQKKILELVEQKVIRTQEELAEALKEAGFDVTQATVSRDIKELGLV
KIPFQKDSYRYALPQKTVSAASIERLKRLFADAVSSYDQSENLIVIKTLP
GAAQGVASAIDQVAFPEILGTIAGDDTILIIARDREQVPKILARFDEFLT
>CHY_1789 codY, GTP-sensing transcriptional pleiotropic repressor CodY
MRTLLEKTRSINRILQKAAGNPVDFEEIAQVLSENINCNVYIVSRKGKIL
GHAFFKNFTCDIMRQVVEETERFPEDYNENFLLKITETHANFCQKANACV
FFQDVQCISQNKVMTVVPIVGGGVRLGTLVLAKFDESFTDGDLVLAEYGA
TVIGMEILRAQAEKVEEEARKKAAVQIALATLSYSELDAIKHIFEELEGD
EGLLVASKIADRVGITRSVIVNALRKFESAGVIESKSLGMKGTYIKVLND
HLFEELEKLNN
>CHY_2157 csh1, CRISPR-associated protein, Csh1 family
MLEAVREVGRLATEHASGGFLENLCLEIDEDQGGKKQHVVIIDFATANNS
LKITPKEITPGVTEREYLWVGNADGSSSPQWYLSTNNLSFLVSQTLPNLL
EVLPEGSKLAQNVQKVLDLYFFDTGVKEGAENRYRYILNLEMLPGYKGSK
LLDLIKENPKGKNLAQAVAKEFSKWIKDQTGLSEKEVALYTIYFDGQKGV
DYREYQEKVEAAKVFDIFAGEEGVCHACGNFGPITSDTTKLKFKYYITDK
IGYASNHDKKNFYKNYSLCPECYKKLLIAESFIQNKFNNRLGNLNLFIIP
GFLFPVNLKKQQFQKWMEFTNNSFNNLKGYSEIAGYEEMVSDYFENRKIY
NQLIFNFLFYQKNKAEFKVLKLIKDIPPSRILKILQLFQKVNEVYKKHFN
QLLPELSLNLNRIYYQIPQQKGKNSVEYRKFLDLLESIFTGHPVEKSFII
RQHIELFKIFAFTKEGFNVNPGSEKYKEIELAKACLRANLLNLFLQELEI
LPKEVEAVELELDLKAEDLEYIRDMGYTPQQAALFLLGVLVGEIASAQHQ
SNLNKAILNKLTYQGMSLRRIISFANEVHQKLFQYKKLNPGTEKIYNSMK
KLLDREIPRWSLSEQENVFYLLSGYSYLTGKILSRAKVEKAEVEGM
>CHY_0155 cspC1, cold shock protein CspC
MQGKVKWFDPKKGYGFIEREDGGDVFVHFSAIQEKGFKTLEEGQRVEFEI
VEGARGPQAANVVKL
>CHY_0157 cspC2, cold shock protein CspC
MQGKVKWFDPAKGYGFIEREDGGDVFVHFSAIKGNGFKTLEEGQRVEFNI
VEGTRGPQAADVVKL
>CHY_2351 ctsR, transcriptional regulator CtsR
MPSLADLIEQYIKKLIQESEDRVVEIQRNELAEKLRCVPSQINYVLATRF
TLEHGYLIESRRGGGGYIRIIKIADQDREAFYQRIFEAIGDAVSESKARE
IIKALYEAGSITEREKRLLTIAVDRKVLQVPLPYRDELRALLLKSMIAGV
LNAEEGN
>CHY_0969 flgM, negative regulator of flagellin synthesis FlgM
MRINGVDFKNVVELYTKAVPSAARNEKSKTDEVVLTESGQEILKLRKKLA
EIPEVREELVSKIKGRILSGEYQIDLEKLAAKLKEWGEF
>CHY_1013 fliA, RNA polymerase sigma factor for flagellar operon
MGSESLDVAGLWREYRRNKSLQLRNELLEYYLPLVRKVSAAMSLKLPTHL
SREDIEGYGIIGLIEAVETYDQNRGVKFESYASLKIRAAIIDELRKQNFL
PRSVWDKIKKVTTSEEMLLNALGEEVPVEKVAEQLGVSVSDVLKIKTLIA
LKNHLSLDEIIDPEGSVDRFAGLADDEKYSPENKFLKRVEIEELREALKR
LSDRERLILQLFYVEELSLKEIAAVLDISTSRVSQIASKALGKLRKLLNE
GVGV
>CHY_0270 glcK, glucokinase
MGNYVVGIDLGGTKIYTALANLNGEIVAEEIEPTTKDETKLLHQLGNMVK
GVIAKSAVPKEKVLGIGIGAPGTVDHRTGTLITAPNLPWQNYPLKINLQA
LLRLPVEVDNDANLAALGEYRYGAGRGHKDMVYVTVSTGIGAGIIIDGQL
YRGSSGSAGELGHTIVEPGGPRCNCGRRGCLEVMASGTAIGERARQLVAE
GFGQEILKLAQGNIEAINAKTVGEAFLAGDPEAKGILNEVAFYLGIGLAN
VVNLLNPSLIVLGGGVINIGEPFLELIREELAEKALPQPYKDLTVKKAVL
GSKTGVMGAIALALERFS
>CHY_1843 glpP, glycerol uptake operon antiterminator regulatory protein
MLIDLINQQKVIPALRNPEDFREVLNIPSVKIMFLLFGDINSLGDYLKHA
RASGKKLIVHFDLIEGLGKDEAAVKYLVKAGVEGIITTKTSIARQAKKEG
IVAIQRLFIIDSEAVRSGLKQLAESKPHGVEILPATVPAKIVREIKETCR
LPVIGGGLIQGEDDLKEALSKGFSAISTNKTALWFLNNVL
>CHY_2366 greA, transcription elongation factor GreA
MKEKEVILTREGLKKLEQELEELKSVKRREVAERIKQAIEFGDISENSEY
EDAKNAQAFIEGRIITLEKMLRNAKIIENDQQKDVVTLGSKVVLKDLEYG
VVEEYYLVGSAEADPSANKISNESPVGSAILGKKKGTVVEVKVPAGTLKY
EIVDILE
>CHY_0412 hrcA, heat-inducible transcription repressor HrcA
MIDERKRKILMAIVQDYISTAEPVGSRTIAKKYDLGISPATIRNEMADLE
EMGYLEQPHTSAGRIPSVLGYRYYVDYLMEKPSLSREEEEFIRKVYEDKI
NSIGDLLEKTGKVLSSLTRYTAVVLSPEAGKVPLKHLQLVLLQPGKVLLI
IVLEDGTLHHRAFEVPGDITAQDLEKVSAILNAKLYGVNPEKIRYSLIKE
IYYELAQHQNLINITLELISNLNQDNQEHKIILGGLINLFNQPEFKNVEK
VKTLLSILEQEEKIREIFSQLNVGVNVKIGSELNLKEIEDCSMIAAGYFS
YGNSVGFIGVLGPTRMEYAKTVATVEFLSKYLSEIIGNKNF
>CHY_1541 hypB, hydrogenase accessory protein HypB
MQVQLTTNILKANDAIAALNRKIFNEKNIFVINIISSPGAGKTTLLEKIL
PKLPPDIKPAVIEGDLTTTKDAERIEKTGVFALQINTLGGCHLDANMINQ
VLEKLPLDEINLLIIENVGNLVCPAGFDLGEDMKMVILSVTEGNDKPLKY
PVIFREAAVSVLNKIDLLNYVDFDLKQYEDDLQAINPDQQRFYVSARTEE
GLEPLIMFIAEKVRSKRGGA
>CHY_1378 lexA, LexA repressor
MKNSLLSHQEKKIISFIKQYLNENGYPPTIREICQGVGLSSPSTVHHHLK
NLESKGYLQRNPTKPRALELVAEKAPEELLSIPLLGNVAAGYPTLAIENA
EEEMQIPKSLFPEKELFALRIKGDSMIEEGILPGDVIIVKKQEVAENGDI
VVAYLEGEVTVKKFWKDSVNGVIKLIPANSKYEPIIINRETKILGKVIGL
LRRY
>CHY_0200 mfd, transcription-repair coupling factor
MSKNIFSLMQENSEFKRLLEGINKKRIQLIYGSYGTARTFLMATVAKALN
RPLLVITENEQVAREIAEDLEFFLGDKTSRFFYREGFLFDLTVREGGELK
ASRIELLKRLSRGEKPHTVVNYEALTRKYPPLQSFARWKRELRVGDVVEL
EELIRYLSQIGYERVDQVEAPGQFSQRGGIVDVYVPGEVPFRAEFFGDEI
DSLRALDVESQRSQANLNEVVIYPAEVAVAEEDLLLEVKQKISADIEQQV
KKLIQQNKREAAGRLKEKGAEVLNILGKSEVIEKLLPYFWSGVSLLDYFG
DEYLVFLDEPGRFGEQINSLEKLRRESFTEALSGGYTLPKQAEVFYEEEQ
LMALLRGRIAVITSLLPKTPRFIGDYDPHNFAGRKPPNYLGKEKLFFEDI
KNFLANNYRIFILRGREEAAVALKNELLKRNFPASFVEKFEVEIAPREIK
IGLGVLNSGFEFPQQKLLVYTDVELAGRAVKARVTKAVLGERAEEPFSPG
DYVVHPVHGIGKYLGIKPVEVGGNVKDYLVIAYQGEDRLYVPPEQVGNLQ
KYVGVDGEPPKLSRLGGSDWQRVKNRVKAAVREMAEGLLELYAKRMAKPG
FAFSPDTVWQKEFEERFPYEETPDQLKAIEEVKRDMEKPKVMDRLLCGDV
GYGKTEVALRAAFKAVMDGKQVAVLTPTTLLAQQHYNTFKERFSGYPVEI
RLLSRFQTAREQKEIIKELKRGKVDIVIGTHRLLQDDVQFYDLGLMIVDE
EQRFGVAQKERLKILTETVDVLTLTATPIPRTLHMALMGIRDLSVLNTPP
ENRFPVQTYVLEEDPFIIRDAIRRELGRGGQVFFVHNRVSDIDEVAAWVQ
SLVPEAKVAVAHGQMKEEQLERVMLEFISGKYDVLVSTTIIETGIDLPNV
NTLIIKNADRFGLAQLYQLRGRVGRSNRIAYAYLMYEKDKVLREAAEKRL
AAIKEFTEFGSGLKLAMRDLEIRGAGNLLGPEQHGHIAAVGFDMYMKLLQ
ETVAELKGQVTSEEVEPQLELNLTAYIPESYIPDEKQKIEMYRRLSRTRN
LEDLEDVVDELIDRFGEIPPEVENLIRLIKIKIVASKLKVKGIFQTDEEL
KIQFFPNPEITAEKLSRISGQFKGRVIFGMNPDLEIRVRTKGKMGQEIFS
ILERIFGQLS
>CHY_1769 nusA, transcription termination factor NusA
MNTEFLQAVQEIEKQKGIPAEVLLEATEQALLSAYKKNYGINQNARVHID
RVTGEVKVYALKTVVEEVKDPRLEISLEEAREKDPRLNLGDVLEIEVTPR
NFGRIAAQNAKQVVIQRIREAERNQIYEEFSSREGDIITGIIRRVDQKNV
YVDLGKTEAILPPQEQIPGENYKFGDRIKAYLVEVKKTSKGPNIILSRTH
PGLLKRLLELEIPELYDGTVELKSIAREAGSRSKIAVYSKDENVDPIGAC
VGNKGLRIKNIVEELNGEKIDVVKWSPDPAKFIANALSPAKVTSVEVFED
EKVARVVVPDYQLSLAIGKEGQNARLAAKLTGWKIDIKSESQVGGI
>CHY_1994 nusB, transcription antitermination factor NusB
MNRHTARELAFKALFGLDFAPEKTLDTLESLWAEKIAEGKIPPEKLVDFS
RELVRGVIEKKERLDEIIRRRAIGWDFKRLAKVDKTLLRLALYEMLYRPD
IDIPVSIDEAVELAKVYGEEESPKFINGILGYVAEHIDEFWEES
>CHY_2324 nusG, transcription termination/antitermination factor NusG
MEKNWYVVHTYSGHENKVKANLEKRIESLNMGNHIFRILVPMEDELEIKD
GKKKVSKRKIFPGYVLVEMILTDESYNVVRHTPGVTGFVGGSKPIPLTAQ
EVRQIMKQMGIDEPRTKIDLEIGQPVRVNAGPFEGFVGNVEEIYPDKGKV
KVLVSMFGRETPIELDFSQVTKI
>CHY_1468 recG, ATP-dependent DNA helicase RecG
MDIPVQYLKGVGPQKAKLLQKLKIETVKDLIYYFPKRYEDRSSLKKISEL
INDEVTTVLGTVVEVKEVIPRDKLKILKVGINDGSGTAYGCFFNQSYLKN
VFIKGKKVYFYGKVEKRFFETNIYVYEYEFWDKELLHTNRLVPIYPLTEN
LSPKTFRQLIKNALDKYLEEITEPLPEEILRKYSLPDLKQALMNLHFPES
SEQSELARRRMVFEEFLLFFLAIGLYKENYQKKPGIVIAGSGELEKKFID
SLPFKLTSAQEKVWREIKEDLAAKKPMNRLVQGDVGSGKTILAALALVKA
VEAGFQGALMAPTEILAEQHYLNLSRLFAPLGIKVVLLSGSLSSGKKEAV
YKAIKNGYADVIIGTHALIQEAVIFDNLGLAVIDEQHRFGVEQRSSLVEK
GLYVNQLVMSATPIPRTLALTLYGDLDVSIVDALPAGRKPIKTYWLSSQD
KGKAYAFLLKQVAEGRQGYVVCPLVEESEKLQVEAVTKLYEKLSKKFPQF
KWGLMHGRLKPAEKEEVMENFRKNNIQILVSTTVIEVGVDVPNANVIIIE
DAWRFGLAQLHQIRGRVGRGEHQSYCFLLGNPRNQEGIVRMKIMEKYNDG
FKIAEEDLKLRGPGELSGTRQSGAWEFKLADIVRDQAILFLAKKEADEIL
TNKENHRALITLALEKYGDKINMLQKN
>CHY_2223 relA, GTP pyrophosphokinase
MLSLEALLKKIKNYNNNMDEELIKKAYNFAAEAHAGQKRASGEDYITHPL
AVAFILAGLQMDDETIAAGLLHDVVEDTAYTIEDIAREFGEEVANLVDGV
TKLSRIEFKNKEEQQVENLRKMFLAMAKDIRVILIKLADRLHNMRTLKYH
NPEKQKEIARETLEIFAPLAHRLGIYRIKWELEDLAFRYLDPDNYYDIVE
KIAKTRAKREQYIQQVISILEEKLKSYNIKAKIEGRPKHLYSIFQKMREQ
QKDFSEVYDVMAVRVIVESVRDCYTVLGIIHTMWIPVPGRFKDYIAMPKS
NMYQSLHTTVIGPFGEPLEIQIRTFEMHRTAEYGIAAHWRYKEGGKGDKK
FDEKLSWLRQILEWQRELKDAREFMETLKVDIFSDSVFVFTPKGDVVELP
AGSVPIDFAYRIHTDVGNRCVGAKVNGRLVPLDYQLKNGDIVEIITKQGA
APSRDWLKIVKTSHAKGKIKSYFKKTQREELALRGRELIEKEIKKLGLNP
EEYSLEKISEVVKKLNFHSLEDLFAAVGDGTVTPNTVLNKIREGLPRTEK
SIEERVIKESKATLNKPTRGLVVRGEADLMVRLAQCCMPVPGDPIVGYVT
RGRGVSVHHTNCRNVEYFRRHEPERLVEVNWEGAIELPFTVRLEIRGHDR
AGFLNDILGVLAEQKISANYVSGRSTKNGGAVVDLALEVKNINQLKQITD
KLEKVRGVTEVYRVNK
>CHY_0130 rho, transcription termination factor Rho
MLTKEQLEQKTIKELYALARELELPGYYRLKKQELVFELAKVFAQKAKEQ
EQKESLLTASGVLEVLPDGYGFLRPFKFLPSQDDIYVSPSQIRKFDLRTG
DQVFGVIRPPKENERYFALLRVEKVNGKEPETSPERLHFDALTPLYPQDR
LYLETAPDEVSARLIDLIAPIGKGQRGLIVAPPKAGKTVLLKQIANSLIK
NYPDLYLIVLLIDERPEEVTDIERSVKGEVVSSTFDEHPENHVKVAEMVL
ERAKRLVEHKYDVVILLDSITRLARAYNLVIPPSGRTLSGGVDPAALYKP
KWFFGAARNIEEGGSLTILATALVETGSRMDDVIFEEFKGTGNMELILDR
KLAERRIFPAVDVQRSGTRKEELLFTPEELEFAWKLRNELSNLTSQDAAE
YLINLIKKTKSNEELIERYLRKSRS
>CHY_1444 rnc, ribonuclease III
MDKENLISLEKILGFNFNNPSILLSAITHPSYAFEHPEEGIEHNERLEFL
GDAVLELFISDYLFRTFPQKSEGDLTKLRSRLVCAESLYELAFKINLDKF
LRLGKGEFKAGGNQRMSNLANAVEAVIGAVYFDCGIEAAFSFITRLYGEK
LKPENLEQLPKDEKTTLQELLQKEKNNVLRYEILLEEGPPHQKIFTAGVI
INDKLIATGRGKSKKEAEQEAAKKALELLKNEKEV
>CHY_0289 rnr, ribonuclease R
MREKILEYLIKANSPQYPDKIIEGLGLTDVSEIKKLLAALRDLEKEGEVY
VTKAGKYGLPEQMNMVRGKIQGHPKGFAFLIPEDREKQDVFISPTNLKGA
MHNDRVLVRYLPFSDGNRPEGEVVKILERANKTVVGSFYRRRHYGLVEPD
DERITGAIIIPLGKKGVKAKNGEKVVVEITAYPRKGELPEGKIIEILGDP
EDQETRLKAIIKKYGLLDSFKPETIKEARAISQEIGPEELKSRRDLRGEM
IVTIDDEDAKDLDDAVSLKKLPNGNYQLGVHIADVSYYVREGSALDKEAL
ERGTSVYLAGKVLPMLPPELSNGICSLNPRVDRLTLSVVMEITPAGEVVS
HEIFPSVIKTRARLTYTIVKKAVLDKDPKAREELGDLVPMLEEMANLAMI
LRKRRLERGAIDFDLPEAKVILDDKGEVVDIVRRERNIAHQLIEEFMLIT
NETVAERFFWQEVPFLYRIHEDPDEGKIQSLKEFLRLFGYNLKGGRDGKY
HPREFQRLLEKVAGRKEERVINAVMLRSMKQARYSAERIWHFGLAAEYYT
HFTSPIRRYPDLMIHRIIREVLEGKLTPRREAKLAKILPKVAKHSSEMER
RAMEAERESVEMRMVEFMVGKEGTEYDAIISGVTSFGFFVQLPNLIEGLV
RVSTLEDDYYLYDEKSYALIGRRTKKVFRLGDEVRVRLVKVNTVSREIDF
MLVKKLGESPETNESAEEILERLT
>CHY_2281 rpoA, DNA-directed RNA polymerase, alpha subunit
MLEIEKPKIETEELNDRYGRFVIEPLERGYGITLGNSMRRILLSSLPGAA
VTSIKIEGVLHEFSTVPGVVEDVTEIILNIKNLTLKLHGDEEQVLRIEAE
GEGVITAKDIIAPPEVEILNPDLVIAHIAEGGRLFMEMTVARGRGYVPAE
RNKKGEHVIGVIPVDSIFSPVLKVNFQVENTRVGQITDYDKLTLEVWTDG
SIRPDEAVSLAARIMVEHLQLFVNLNERATGVEIMVEKEEDAKEKLAEMP
IEDLDLSVRSYNCLKRAGINTVGELIQKTEADMMKVRNLGKKSLEEVISK
LNSMGLSLRKEEE
>CHY_2318 rpoB, DNA-directed RNA polymerase, beta subunit
MIPVQVGKKIRYSYAKFPEILELPYLIEIQKKSYQWFLDEGLREVFREIS
PITDFTGNLSLEFLDYYLGKPKYSVEECKERDFTYSAPLRVKVRLLNKET
GEIKEQEVFLGDFPLMTEKGTFIFNGAERVVISQMVRSPGVYFSEQVDPN
GKKMYLATIIPNRGAWLEFETDVNDHIYVRIDRTRKLPVTVLLKALGYES
KGRIAELFDHDDKIIATLERDNTDSREEALIEIYKKLRPGEPPTVESAKT
LLDSMFFDPKRYDLGNVGRYKLFKKLNHGVLYRYLEEDGEKEYDKYLNDY
VPVKREFIRELTNEDIIYTIRYLLGLMRGQGKVDDIDHLGNRRLRSVGEL
LQNQFRIGLARMERVVRERMTIQDADSLTPQVLINTRPIVAAIKEFFGSS
QLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMC
PIETPEGPNIGLIGNLTTYARVNEFGFIETPYRKVDKERGVVTNEIVYLT
ADEEEKYIIAQANVRLSPEGKFLDEMVNARHGSEILHVEPSKVDFVDVSP
KQVFSVATSLIPFLEHDDANRALMGANMQRQAVPLIRTEAPVVGTGIEYK
AAKDSGVVVLAKNPGVVERVTADEIVIRNDQGQIDRYKLIKFQRSNQGTC
INQKPIVRKGERVEKDQIIADGPSTDHGELALGKNVLVAYMPWEGYNYED
AILISEKLVKEDVFTSIHIEEYECDARDTKLGPEEITRDIPNVGEDALKD
LDERGIIRIGAEVRPGDILVGKVTPKGETELTAEERLLRAIFGEKAREVR
DTSLRVPHGESGKVVDVKVFSRENGDELSPGVNMLVRVYIAQKRKISVGD
KMAGRHGNKGVVARILPEEDMPFLPDGTPVEIVLNPLGVPSRMNIGQILE
CHLGWAAKALGINVATPIFNGATEEDIFEALRKAGLPEDGKIEVRDGRTG
EPFDSRVTVGYVYMLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQ
RFGEMEVWALEAYGAAYTLQEILTIKSDDVVGRVKTYEAIVKGENIPEPG
VPESFKVLIKELQSLGLDVKVLTDNDEEVEIKEIDDDIGEKAEEYGLAAS
IADRDEVKNEYYEEEVEADFEINDDFDGDLED
>CHY_2317 rpoC, DNA-directed RNA polymerase, beta' subunit
MLVLNNFERIKIGLASPDQIRAWSHGEVKKPETINYRTLKPERDGLFCER
IFGPTKDWECHCGKYKRVRYKGVVCDRCGVEVTRSKVRRERLGHIELAAP
VSHIWYFKGIPSRMGLLLDMSPRSLEKVLYFVSYIVIDPGETPLLKKQLL
TETEYREAREKYGNAFKAGMGAEAIKELLAEIDLDELSAELKAEIKESTG
QRRIRALRRLEVVESFRKSGNRPEWMILDVIPVIPPELRPMVQLDGGRFA
TSDLNDLYRRVINRNNRLKRLLELGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPEL
KLHQCGLPKEMALELFKPFVMKKLVADGIAHNIKSAKRMVERVKPEVWDV
LEEVIKEHPVLLNRAPTLHRLGIQAFEPVLVEGRAIQIHPLVCTAYNADF
DGDQMAVHVPLSAEAQAEARLLMLSSHNILNPKDGKPVVVPTQDMVIGSY
YLTVEKPGAKGEGKKFAHPEEVIMAYEEGVIELHTKIKVRYPIRGEIVEL
ETTPGRIIFNEVIPEELRFINHLVDKKALGKIVTESYRKLGYEKTGYLLD
GLKKLGFHYATKAGLTIGIVDITVPKEKQEILEEADRMVADIEVKYRRGL
ITEDERYQRVVDIWNAATEKVTKKLVETLEASQFNHVYMMAKSGARGNIQ
QIRQLAGMRGLMADPSGRIIDLPIKANFREGLTVLEYFISTHGARKGLAD
TALRTADSGYLTRRLVDVCQDVIVREEDCGTEDGIYVTDVKDGTDVIEKL
EDRILGRVAAEDVVHPETGELLVAKNQEITEEIAEKIVSANIKKVKIRSV
LTCRTRHGVCTRCYGRNLATNSIVDIGEAVGIIAAQSIGEPGTQLTMRTF
HTGGVAGEDITQGLPRVEELFEARRPKGQAIITEIDGVVEVRDNKGRREI
EVINQETGERKVYPITYQARIKVQTGDKVYAGDELTEGPINPHDLIKVKG
IEGAQLYLLQEVQKVYRMQGVEINDKHIEVVIRQMLRKVKIEDSGDTDLL
PGSLVDIFEFEDENAKVIAKGGKPATAKRVLLGITKASLATDSFLSAASF
QETTRVLTEAAIKGKVDPLLGLKENVIIGKLIPAGTGMARYRNIMVQAKN
EE
>CHY_0455 rpoD, RNA polymerase sigma factor RpoD
MKEIMQNEKLMEIVEKGKKRGVLTYNDLLDSLQNVDINSEQIDELYEYLA
NQGIEVVPEIPELELDSINSLDDDVDFKPSDIDEVDLDLTIPEGIAIDDP
VRMYLKEIGRVPLLTPEEEIELAKRKEEGDEEAKRKLAEANLRLVVSIAK
RYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAITRA
IADQARTIRIPVHMVETINKLIRVSRNLLQELGREPTPEEIAKEMGISED
KVREIMKIAQEPVSLETPIGEEEDSHLGDFVEDPDAKAPVEEASYTLLRE
QLDEVLKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEA
KALRKLRHPSRSKKLKDFLE
>CHY_0279 rpoN, RNA polymerase sigma-54 factor
MPMDFGLNLEQTQKLVLTPELKQAITILQLNTLELVSFIEQQVETNPLLE
IEICEDKEENELGENEEYQELREIAEYFADSSDLGMGLRQEDEERKGFEP
ASSESSLWEHLYLQLHLLNLPQLDNKIGEFIIGNIDENGYLTCPVEEISE
RLKVEEEEVVRVLKIIQTFDPPGVGARGLLECLLIQAEQKNILTPLLKEI
ISNYLPDLAQSKYLKVANRLGVTVEEVYQAMDIIKSLDPKPGRNFATLKE
VRYVVPDITVEKVESEYIILVNDSLLPRLNINKIYQNILKQKDYDEKTKK
YVEKKLNQALWLIKSIEQRRFTLYRVARFIVDYQREFLEYGLKYLKPLTL
KQVAKALNLHESTISRACANKYMATPRGTFEMKYFFASALESGQGGFSSS
TSIKAQIKELIARENPQDPLSDQRIADILTQRGVKISRRTVAKYREEMGI
LAAAKRRKV
>CHY_1487 rpoZ, DNA-directed RNA polymerase, omega subunit
MNQPSLDILMKKADSRYTLVVATAKRARQITAGESSKLKHISNKPVTIAL
HEIGNDLITYQRLKSSQNK
>CHY_1945 scpB, segregation and condensation protein B
MEKSGYGMSVLFPINLEGALEALLFVSPEPLSLKKIAQTLELSVEEAKEI
VLRLQEKLEQDQRGIMLHFSGEEVWLTTRPDFSVYIERLFKPPAQHLTQA
TLETLAIIAYKQPVTKTEIELIRGVKADSSIATLLEKGLIEEAGRKDAPG
RPIIYRTTAKFLEFFGLKSLDELPPLNLENEAVNDGNNNFEE
>CHY_2056 sigE, RNA polymerase sigma-E factor
MVIKKFFFWLKNLFKKFFERPGEVYYIGSHDILPPPLSSEEENTLLTLLV
QGDAAAKSTLIERNLRLVVYIARKFENTGVNIEDLVSIGTIGLIKAVNTF
NPEKKIKLATYASRCIENEILMYLRRNSKIRLEVSFDEPLNVDWDGNELL
LSDVLGTEGDIIYKVMEDEVEKKLLKVALSKLNQRERKIMELRFGLTDGY
ERTQKEVADLLGISQSYISRLEKKILKRLKKEIIRME
>CHY_1959 sigF, RNA polymerase sigma-F factor
MNFRFSSMNLPRFPRLGEQEIKELIEKAQKGDVAAREKLINCNLKLVFKV
VERFLHRGYEVEDLFQIGTIGLIKAIDKFDLKQQVKFSTYAVPMIVGEIR
RFLRDDQAIRISRSTKELGVKILKEKEALTVKLGREPTIAELEETLGYSR
EAIVEALEAGQSLASLFETVHQDDGDPIYLLDQIKQEGDEEQTLLENISI
KEVLSKLEPRERYILINRFFKEKTQMEIARTLGISQVQVSRLERQALLKL
KRYLNES
>CHY_2055 sigG, RNA polymerase sigma-G factor
MQSNKVEICGVNTSKLPVLTNQEMKKLFLKVKEGDMEARQKLISGNLRLV
LSIIQRFTNRGEYVDDLFQVGCIGLIKAIDNFDLEQNVKFSTYAVPMIIG
EIRRYLRDNNPIRVSRSLRDVAYKALQVRDNLVGRFSREPTVSEIAQELK
VPQEEVVFALDAIQDPVSLFEPIYQDGGDPIFVMDQIKDEKNTDHNWLQG
IALKEALERLNERERLILKLRFYEGKTQMEVAEEIGISQAQVSRLEKAAL
NHLRKFV
>CHY_2333 sigH, RNA polymerase sigma-H factor
MGLSISAEKKMEYCYDYMSDEEIVEWARAGDEQALEYIINKYKNFVRSKA
RAYFLIGADREDIIQEGMIGLYKAVRDFRPDKLSSFRAFAELCVTRQIIT
AIKTATRQKHIPLNSYVSLNKPIYDEDSDRTLMDVLSGVKVADPEELIIS
REEFADIEGKMNEILSSLEWKVLIYYLEGKSYQEIACELNRHVKSIDNAL
QRVKRKLEKYLECREAE
>CHY_0617 sigK, RNA polymerase sigma-K factor
MGVLGALITLVVEGLLFLLGYLAGSAFPQPLSEEEEAYYIDRLLQGDREA
RDVLAERNLRLVAHIVKKFEGTGEATEDLISIGTIGLIKAIDTFRPDKGT
KLATYAAKCVENEILMHLRATKKNRGEVSLYDPIGFDKEGNEITLLDILG
TRGDIVLEQVVRMLDAETIEKNLKKLTPRERKVIEERFGLSQTPRKTQRE
IAKKMGISRSYVSRIEKRAILKLLNCFPENKVKF
>CHY_1709 sigZ, RNA polymerase sigma-Z factor
MIRLANIFEDFSKEFYQLLKNFIKKQVSQESDVEDILQEVMIKIYKNIDK
LNDSSKLQSWIYQIAKNTIIDYYRKQSKSIFLHDNLVFYSSPVESTFNKE
IAQCLKNMIDHLPDPYRQAILLTEYHGFTQKKVSEKLGLSVSGVKSRVQR
ARKMLKNMLENCCYLEFDRLGNIIDYQHKDTNCKYC
>CHY_0202 spoVT, stage V sporulation protein T
MKATGIVRRIDDLGRVVIPKEIRRTLRIREGDPLEIFVDRNGEVILKKYS
PIGELGDFAKEYAESLHESLGHIAFIADRDTIIAVAGAPKKEFLNKPIGP
AVERAMNERKTVLITATGEHEYCKECITAEEGKCLFTSEIIAPIIAEGDP
IGAVIIASREPGVKFGTLEQKMAETAAHFLAKQMEQ