Gene list
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COG category: Transcription
Organism: Nitrosococcus oceani ATCC 19707, ATCC 19707
Number of genes found: 100
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| Nitrosococcus oceani ATCC 19707, ATCC 19707 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | Noc_1702 | RpoS | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 1905251 | 912 | + | 0.432018 |
| NA | Noc_2582 | DEAD/DEAH box helicase-like | RecName: Full=ATP-dependent RNA helicase RhlB; EC=3.6.4.13; | chromosome | CDS | 2935489 | 1296 | - | 0.469136 |
| NA | Noc_1300 | RelA/SpoT protein | SubName: Full=RelA/SpoT protein; EC=2.7.6.5; | chromosome | CDS | 1438866 | 2145 | - | 0.529138 |
| NA | Noc_2401 | Phosphate regulon transcriptional regulatory protein phoB | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 2750894 | 690 | - | 0.555072 |
| NA | Noc_2820 | transcriptional regulator, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 3196829 | 642 | + | 0.515576 |
| NA | Noc_2760 | Hg(II)-responsive transcriptional regulator | SubName: Full=Hg(II)-responsive transcriptional regulator; | chromosome | CDS | 3132209 | 408 | + | 0.615196 |
| NA | Noc_0384 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 425856 | 381 | + | 0.580052 |
| NA | Noc_1049 | Helix-turn-helix, Fis-type | SubName: Full=DNA-binding protein Fis; | chromosome | CDS | 1156596 | 327 | - | 0.489297 |
| NA | Noc_2121 | Transcription termination factor NusA | SubName: Full=NusA antitermination factor; | chromosome | CDS | 2443399 | 1521 | - | 0.496384 |
| NA | Noc_2877 | Urease accessory protein UreG | RecName: Full=Urease accessory protein UreG; | chromosome | CDS | 3257843 | 612 | - | 0.511438 |
| NA | Noc_2300 | DNA-directed RNA polymerase, alpha subunit | RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; | chromosome | CDS | 2651873 | 999 | - | 0.44044 |
| NA | Noc_2611 | DEAD/DEAH box helicase-like | SubName: Full=ATP-dependent RNA helicase CsdA; EC=5.99.1.-; | chromosome | CDS | 2965264 | 1503 | + | 0.510978 |
| NA | Noc_2330 | DNA-directed RNA polymerase, alpha subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 2669642 | 4212 | - | 0.487654 |
| NA | Noc_2738 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 3108487 | 288 | - | 0.53125 |
| NA | Noc_2484 | Transcriptional activator RfaH | RecName: Full=Transcription antitermination protein RfaH; | chromosome | CDS | 2830902 | 525 | + | 0.491429 |
| NA | Noc_1636 | Ribonuclease BN | SubName: Full=tRNA-processing RNAse BN; EC=3.1.-.-; | chromosome | CDS | 1827782 | 1344 | + | 0.467262 |
| NA | Noc_1642 | Transcription-repair coupling factor | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 1833219 | 3477 | - | 0.50302 |
| NA | Noc_1028 | Ectoine synthase | RecName: Full=L-ectoine synthase; EC=4.2.1.108; AltName: Full=N-acetyldiaminobutyrate dehydratase; | chromosome | CDS | 1138167 | 402 | + | 0.504975 |
| NA | Noc_0616 | Prophage CP4-57 regulatory | SubName: Full=Phage transcriptional regulator, AlpA; | chromosome | CDS | 664804 | 246 | - | 0.520325 |
| NA | Noc_2410 | transcriptional regulatory protein, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 2757529 | 978 | - | 0.635992 |
| NA | Noc_0445 | Helix-turn-helix protein, CopG | SubName: Full=Helix-turn-helix protein, CopG; | chromosome | CDS | 480279 | 243 | - | 0.518519 |
| NA | Noc_0368 | Protein of unknown function DUF179 | RecName: Full=UPF0301 protein Noc_0368; | chromosome | CDS | 400863 | 564 | - | 0.52305 |
| NA | Noc_1040 | chromosome segregation and condensation protein ScpB | SubName: Full=Condensin subunit ScpB; | chromosome | CDS | 1149255 | 669 | + | 0.496263 |
| NA | Noc_2331 | DNA-directed RNA polymerase, beta subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 2673930 | 4080 | - | 0.465931 |
| NA | Noc_1918 | transcription elongation factor | SubName: Full=Transcription elongation factor; | chromosome | CDS | 2195239 | 390 | - | 0.535897 |
| NA | Noc_0891 | transcriptional regulator, GntRfamily, with Aminotransferase domain | SubName: Full=Transcriptional regulator, GntR family; | chromosome | CDS | 971206 | 1515 | - | 0.489769 |
| NA | Noc_0660 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 713769 | 906 | - | 0.537528 |
| NA | Noc_0283 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 312416 | 309 | - | 0.540453 |
| NA | Noc_2466 | Sigma 24, FecI-like, ECF family | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 2812129 | 579 | - | 0.471503 |
| NA | Noc_1919 | transcriptional regulatory protein, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 2195760 | 924 | + | 0.517316 |
| NA | Noc_1441 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1597838 | 936 | + | 0.461538 |
| NA | Noc_1562 | Proteinase inhibitor I3, Kunitz legume | SubName: Full=Diaminobutyrate acetyltransferase; EC=2.3.1.178; | chromosome | CDS | 1737008 | 489 | - | 0.470348 |
| NA | Noc_1096 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1202901 | 303 | + | 0.547855 |
| NA | Noc_2897 | Ribonuclease R | RecName: Full=Ribonuclease R; Short=RNase R; EC=3.1.13.1; | chromosome | CDS | 3275464 | 2169 | - | 0.55325 |
| NA | Noc_0617 | Peptidase S24, S26A and S26B | SubName: Full=Phage repressor protein, Serine peptidase, MEROPS family S24; | chromosome | CDS | 665310 | 678 | - | 0.520649 |
| NA | Noc_1216 | ATP-dependent DNA helicase RecG | SubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; | chromosome | CDS | 1329485 | 2139 | + | 0.558672 |
| NA | Noc_0449 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 485289 | 297 | - | 0.468013 |
| NA | Noc_2491 | Protein of unknown function UPF0074 | SubName: Full=Transcriptional regulator, BadM/Rrf2 family; | chromosome | CDS | 2837326 | 477 | - | 0.524109 |
| NA | Noc_0256 | S-layer protein, putative | SubName: Full=S-layer protein, putative; | chromosome | CDS | 282317 | 1062 | - | 0.548964 |
| NA | Noc_2545 | Transcriptional regulator, AbrB family | SubName: Full=Transcriptional regulator, AbrB family; | chromosome | CDS | 2894285 | 270 | - | 0.451852 |
| NA | Noc_0686 | chromosome partitioning protein | SubName: Full=Chromosome partitioning protein; | chromosome | CDS | 742909 | 162 | + | 0.5 |
| NA | Noc_2206 | Transcriptional regulator, AbrB family | SubName: Full=Transcriptional regulator, AbrB family; | chromosome | CDS | 2549811 | 243 | - | 0.530864 |
| NA | Noc_1864 | Conserved hypothetical protein 2243 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2118695 | 2079 | - | 0.497835 |
| NA | Noc_2066 | RpoD | RecName: Full=RNA polymerase sigma factor RpoD; AltName: Full=Sigma-70; | chromosome | CDS | 2376951 | 1740 | + | 0.521839 |
| NA | Noc_2292 | transcriptional regulatory protein, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 2645086 | 921 | + | 0.507058 |
| NA | Noc_1935 | RpoH | RecName: Full=RNA polymerase sigma factor RpoH; AltName: Full=RNA polymerase sigma-32 factor; | chromosome | CDS | 2213065 | 864 | + | 0.497685 |
| NA | Noc_1027 | transcriptional regulatory protein, MarR family | SubName: Full=Transcriptional regulatory protein, MarR family; | chromosome | CDS | 1137493 | 522 | - | 0.519157 |
| NA | Noc_1303 | RNA binding S1 | SubName: Full=RNA binding S1; EC=2.7.7.8; | chromosome | CDS | 1446114 | 2298 | + | 0.497824 |
| NA | Noc_1057 | hypothetical protein | SubName: Full=Uncharacterized protein; Flags: Precursor; | chromosome | CDS | 1163559 | 462 | - | 0.482684 |
| NA | Noc_1716 | Protein of unknown function UPF0074 | SubName: Full=Transcriptional regulator, BadM/Rrf2 family; | chromosome | CDS | 1920232 | 426 | + | 0.469484 |
| NA | Noc_2026 | Protein of unknown function DUF193 | RecName: Full=Transcriptional repressor NrdR; | chromosome | CDS | 2338195 | 525 | - | 0.56381 |
| NA | Noc_0545 | Helicase-like | SubName: Full=Helicase-like protein; | chromosome | CDS | 584133 | 2733 | - | 0.622393 |
| NA | Noc_2930 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 3315526 | 339 | + | 0.528024 |
| NA | Noc_0414 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 455863 | 279 | - | 0.408602 |
| NA | Noc_0189 | Bvg accessory factor | RecName: Full=Type III pantothenate kinase; EC=2.7.1.33; AltName: Full=PanK-III; AltName: Full=Pantothenic acid kinase; | chromosome | CDS | 207230 | 801 | + | 0.514357 |
| NA | Noc_1837 | transcriptional regulatory protein, LysR family | SubName: Full=Transcriptional regulatory protein, LysR family; | chromosome | CDS | 2085820 | 951 | + | 0.540484 |
| NA | Noc_2944 | transcription regulator containing HTH domain-like | SubName: Full=Transcription regulator containing HTH domain-like protein; | chromosome | CDS | 3332276 | 468 | - | 0.467949 |
| NA | Noc_0619 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 666360 | 1533 | + | 0.53816 |
| NA | Noc_2609 | Cold-shock protein, DNA-binding | SubName: Full=Cold-shock DNA-binding protein family; | chromosome | CDS | 2964160 | 210 | + | 0.466667 |
| NA | Noc_1213 | RNA polymerase, omega subunit | RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega; | chromosome | CDS | 1326641 | 261 | + | 0.521073 |
| NA | Noc_1521 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1686789 | 210 | + | 0.519048 |
| NA | Noc_2781 | BolA-like protein | SubName: Full=Transcriptional regulator, BolA protein family; | chromosome | CDS | 3158123 | 228 | - | 0.513158 |
| NA | Noc_0964 | Stage II sporulation E | SubName: Full=Stage II sporulation E; | chromosome | CDS | 1064683 | 744 | + | 0.532258 |
| NA | Noc_2571 | transcription elongation factor GreA | RecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; | chromosome | CDS | 2923264 | 477 | - | 0.48218 |
| NA | Noc_0045 | RpoD | RecName: Full=RNA polymerase sigma factor RpoD; AltName: Full=Sigma-70; | chromosome | CDS | 43212 | 1809 | + | 0.478718 |
| NA | Noc_1465 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1621788 | 2745 | + | 0.507104 |
| NA | Noc_1088 | trancriptional regulatory protein, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 1193648 | 600 | - | 0.486667 |
| NA | Noc_1147 | transcriptional regulatory protein, MerR family | SubName: Full=Transcriptional regulator, MerR family; | chromosome | CDS | 1255205 | 357 | + | 0.456583 |
| NA | Noc_2458 | Ribonuclease III | RecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; Short=RNase III; | chromosome | CDS | 2804551 | 702 | - | 0.497151 |
| NA | Noc_0063 | Type III restriction enzyme, res subunit | SubName: Full=Type III restriction enzyme, res subunit; | chromosome | CDS | 64658 | 2889 | + | 0.606438 |
| NA | Noc_0199 | regulatory protein, TetR family | SubName: Full=Transcriptional regulator, TetR family; | chromosome | CDS | 216937 | 645 | + | 0.516279 |
| NA | Noc_1474 | ECF sigma factor | SubName: Full=ECF sigma factor; | chromosome | CDS | 1634128 | 567 | - | 0.536155 |
| NA | Noc_0656 | helicase, DEAD/DEAH box family | SubName: Full=Helicase, DEAD/DEAH box family; | chromosome | CDS | 709314 | 2283 | - | 0.537013 |
| NA | Noc_1567 | Helix-turn-helix protein, CopG family | SubName: Full=Helix-turn-helix protein, CopG family; | chromosome | CDS | 1743105 | 243 | + | 0.526749 |
| NA | Noc_0203 | Cu(I)-responsive transcriptional regulator | SubName: Full=Cu(I)-responsive transcriptional regulator; | chromosome | CDS | 223337 | 408 | - | 0.52451 |
| NA | Noc_2967 | Protein of unknown function UPF0074 | SubName: Full=Transcriptional regulator, BadM/Rrf2 family; | chromosome | CDS | 3353799 | 462 | + | 0.419913 |
| NA | Noc_0290 | Penicillinase repressor | SubName: Full=Penicillinase repressor; | chromosome | CDS | 317679 | 408 | + | 0.539216 |
| NA | Noc_0057 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 57899 | 1668 | + | 0.543165 |
| NA | Noc_3082 | ParB-like partition protein | SubName: Full=Chromosome segregation DNA-binding protein; | chromosome | CDS | 3473637 | 876 | - | 0.501142 |
| NA | Noc_2336 | transcription antitermination protein NusG | RecName: Full=Transcription termination/antitermination protein NusG; | chromosome | CDS | 2680701 | 534 | - | 0.486891 |
| NA | Noc_2060 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator; | chromosome | CDS | 2368933 | 708 | + | 0.54661 |
| NA | Noc_2044 | Transcriptional regulator, AbrB family | SubName: Full=Transcriptional regulator, AbrB family; | chromosome | CDS | 2353853 | 249 | - | 0.401606 |
| NA | Noc_1354 | two compnent transcriptional regulator, winged helix family | SubName: Full=Two compnent transcriptional regulator, winged helix family; Flags: Precursor; | chromosome | CDS | 1500026 | 660 | + | 0.580303 |
| NA | Noc_0334 | transcriptional regulatory protein, LysR family | SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 361375 | 906 | + | 0.513245 |
| NA | Noc_0569 | transcriptional regulator, Cro/CI family | SubName: Full=Transcriptional regulator, Cro/CI family; | chromosome | CDS | 616565 | 354 | + | 0.550847 |
| NA | Noc_2793 | Sigma-54, RpoN | RecName: Full=RNA polymerase sigma-54 factor; | chromosome | CDS | 3166839 | 1449 | + | 0.461698 |
| NA | Noc_2684 | Anti-sigma-28 factor, FlgM | SubName: Full=Anti-sigma-28 factor, FlgM; | chromosome | CDS | 3040653 | 324 | + | 0.459877 |
| NA | Noc_1652 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 1847033 | 231 | + | 0.419913 |
| NA | Noc_2542 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 2891872 | 498 | - | 0.528112 |
| NA | Noc_0676 | Two comoponent transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 733591 | 696 | - | 0.557471 |
| NA | Noc_2592 | Transcription termination factor Rho | RecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; | chromosome | CDS | 2945628 | 1257 | - | 0.479714 |
| NA | Noc_2155 | Sigma28 (Flagella) | RecName: Full=RNA polymerase sigma factor FliA; AltName: Full=RNA polymerase sigma factor for flagellar operon; AltName: Full=Sigma F; AltName: Full=Sigma-28; | chromosome | CDS | 2489824 | 705 | - | 0.524823 |
| NA | Noc_1364 | Helicase c2 | SubName: Full=Helicase c2; | chromosome | CDS | 1510384 | 1923 | + | 0.525741 |
| NA | Noc_1214 | RelA/SpoT protein | SubName: Full=RelA/SpoT protein; EC=2.7.6.5; | chromosome | CDS | 1326967 | 2130 | + | 0.5277 |
| NA | Noc_0659 | DEAD/DEAH box helicase family | SubName: Full=DEAD/DEAH box helicase family; | chromosome | CDS | 712450 | 1323 | - | 0.54195 |
| NA | Noc_0803 | NusB antitermination factor | RecName: Full=N utilization substance protein B homolog; Short=Protein NusB; | chromosome | CDS | 875762 | 447 | + | 0.496644 |
| NA | Noc_2813 | Negative regulator of class I heat shock protein | RecName: Full=Heat-inducible transcription repressor hrcA; | chromosome | CDS | 3189550 | 1050 | - | 0.489524 |
| NA | Noc_1648 | Iron-sulphur cluster assembly transcription factor IscR | SubName: Full=Transcriptional regulator, BadM/Rrf2 family; | chromosome | CDS | 1843366 | 501 | + | 0.477046 |
| NA | Noc_0183 | RpoS | RecName: Full=RNA polymerase sigma factor RpoS; AltName: Full=Sigma S; AltName: Full=Sigma-38; | chromosome | CDS | 202201 | 966 | - | 0.462733 |
| NA | Noc_2538 | Transcriptional regulator, AbrB family | SubName: Full=Transcriptional regulator, AbrB family; | chromosome | CDS | 2889675 | 270 | + | 0.551852 |
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