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Gene list

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COG category: Transcription
Organism: Thiobacillus denitrificans ATCC 25259, ATCC 25259

Number of genes found: 127

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Thiobacillus denitrificans ATCC 25259, ATCC 25259
NameLocus tagProduct / DescriptionUniProt / TrEMBL protein nameGenomic elementTypeBeginLengthStrandGC-content
NA Tbd_2677 Possible Transcriptional RegulatorSubName: Full=Possible Transcriptional Regulator; chromosome CDS2752544 213 + 0.591549
NA Tbd_2192 NusB antitermination factorRecName: Full=N utilization substance protein B homolog; Short=Protein NusB; chromosome CDS2273647 438 + 0.639269
NA Tbd_0430 DNA-directed RNA polymerase, alpha subunitRecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; chromosome CDS449718 981 + 0.637105
NA Tbd_2681 Predicted transcriptional regulatorSubName: Full=Predicted transcriptional regulator; chromosome CDS2756352 1905 + 0.644619
NA Tbd_1656 transcription-repair coupling factorRecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; chromosome CDS1738365 3441 + 0.674513
NA Tbd_0471 Metal dependent phosphohydrolase, HD regionSubName: Full=Metal dependent phosphohydrolase, HD region; EC=2.7.6.5; chromosome CDS493680 2217 - 0.662607
NA Tbd_1275 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1341679 432 + 0.724537
NA Tbd_1972 transcriptional regulatory protein GntRSubName: Full=Transcriptional regulatory protein GntR; chromosome CDS2062238 1413 - 0.647558
NA Tbd_1014 Transcriptional Regulator, MerR familySubName: Full=Transcriptional Regulator, MerR family; chromosome CDS1082945 366 + 0.620219
NA Tbd_0072 Possible Transcriptional Regulator, AsnC familySubName: Full=Possible Transcriptional Regulator, AsnC family; chromosome CDS74957 501 - 0.704591
NA Tbd_2095 Sigma-24 (FecI)RecName: Full=RNA polymerase sigma factor; chromosome CDS2186163 597 - 0.59129
NA Tbd_1257 Predicted transcriptional regulatorSubName: Full=Predicted transcriptional regulator; chromosome CDS1319398 666 + 0.675676
NA Tbd_1180 RNA polymerase sigma-70 factorRecName: Full=RNA polymerase sigma factor FliA; AltName: Full=RNA polymerase sigma factor for flagellar operon; AltName: Full=Sigma F; AltName: Full=Sigma-28; chromosome CDS1240327 711 + 0.624473
NA Tbd_2791 Two component Transcriptional regulator, Winged helix familySubName: Full=Two component Transcriptional regulator, Winged helix family; Flags: Precursor; chromosome CDS2871834 666 + 0.701201
NA Tbd_0348 Two component Transcriptional regulator, Winged helix familySubName: Full=Two component Transcriptional regulator, Winged helix family; chromosome CDS366627 648 - 0.658951
NA Tbd_1653 Predicted transmembrane transcriptional regulator (anti-sigma factor)SubName: Full=Predicted transmembrane transcriptional regulator (Anti-sigma factor); chromosome CDS1736433 762 - 0.7021
NA Tbd_0074 Possible Transcriptional Regulator, AsnC familySubName: Full=Possible Transcriptional Regulator, AsnC family; chromosome CDS75897 1005 - 0.680597
NA Tbd_1344 Transcriptional Regulator, XRE familySubName: Full=Transcriptional Regulator, XRE family; chromosome CDS1425549 777 - 0.6139
NA Tbd_1249 RNA polymerase sigma-70 factorRecName: Full=RNA polymerase sigma factor FliA; AltName: Full=RNA polymerase sigma factor for flagellar operon; AltName: Full=Sigma F; AltName: Full=Sigma-28; Flags: Precursor; chromosome CDS1311870 741 + 0.647773
NA Tbd_0461 Putative transcriptional acitvator, BafRecName: Full=Type III pantothenate kinase; EC=2.7.1.33; AltName: Full=PanK-III; AltName: Full=Pantothenic acid kinase; chromosome CDS484682 735 + 0.693878
NA Tbd_2524 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2595958 504 + 0.678571
NA Tbd_1077 Predicted transcriptional regulatorSubName: Full=Predicted transcriptional regulator; chromosome CDS1136104 1347 - 0.457313
NA Tbd_2216 ROK family proteinSubName: Full=ROK family protein; chromosome CDS2294222 990 + 0.70101
NA Tbd_1028 Transcriptional Regulator, MarR familySubName: Full=Transcriptional Regulator, MarR family; chromosome CDS1094753 441 + 0.70068
NA Tbd_1749 Two component Heavy metal response Transcriptional regulator, Winged helix familySubName: Full=Two component Heavy metal response Transcriptional regulator, Winged helix family; Flags: Precursor; chromosome CDS1840147 729 + 0.644719
NA Tbd_0520 GreA/GreB family elongation factorRecName: Full=Transcription elongation factor GreB; AltName: Full=Transcript cleavage factor GreB; chromosome CDS549958 564 - 0.679078
NA Tbd_2389 Possible Transcriptional Regulator, TetR familySubName: Full=Possible Transcriptional Regulator, TetR family; chromosome CDS2462160 615 + 0.62439
NA Tbd_2267 Transcriptional Regulator, MerR familySubName: Full=Transcriptional Regulator, MerR family; chromosome CDS2339159 399 + 0.719298
NA Tbd_0399 RNA polymerase I subunit ARecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; chromosome CDS428560 4197 + 0.649273
NA Tbd_1758 GTP diphosphokinase, RelA/SpoT proteinSubName: Full=GTP diphosphokinase, RelA/SpoT protein; EC=2.7.6.5; chromosome CDS1848989 2169 - 0.68142
NA Tbd_0345 sigma-70 factorRecName: Full=RNA polymerase sigma factor RpoH; AltName: Full=RNA polymerase sigma-32 factor; chromosome CDS363361 846 - 0.641844
NA Tbd_1658 Putative Anti-Sigma-28 factor, FlgMSubName: Full=Putative Anti-Sigma-28 factor, FlgM; chromosome CDS1743124 309 + 0.656958
NA Tbd_1351 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS1429518 441 - 0.673469
NA Tbd_2388 Carbamoyl-phosphate synthase L chain, ATP-bindingRecName: Full=RNA polymerase sigma factor RpoD; AltName: Full=Sigma-70; chromosome CDS2460031 1971 + 0.623541
NA Tbd_2275 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2346487 2709 - 0.613511
NA Tbd_2805 chromosome partitioning protein ParBSubName: Full=Chromosome partitioning protein ParB; chromosome CDS2885635 855 - 0.705263
NA Tbd_1383 Hydrogenase accessory protein HypBSubName: Full=Hydrogenase accessory protein HypB; chromosome CDS1461479 807 + 0.662949
NA Tbd_0482 Possible Transcriptional Regulator, TetR familySubName: Full=Possible Transcriptional Regulator, TetR family; chromosome CDS503804 642 + 0.661994
NA Tbd_1287 Two component Transcriptional regulator, Winged helix familySubName: Full=Two component Transcriptional regulator, Winged helix family; Flags: Precursor; chromosome CDS1355283 699 + 0.685265
NA Tbd_0038 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS40112 114 + 0.640351
NA Tbd_1945 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2038631 2403 + 0.692468
NA Tbd_0472 RNA polymerase, omega subunitRecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega; chromosome CDS495868 204 - 0.642157
NA Tbd_1424 Putative Transcriptional Regulator, ArsR familySubName: Full=Putative Transcriptional Regulator, ArsR family; chromosome CDS1514572 477 + 0.656184
NA Tbd_2285 Possible Transcriptional Regulator, Fis familySubName: Full=Possible Transcriptional Regulator, Fis family; chromosome CDS2358643 930 - 0.690323
NA Tbd_2032 Negative regulator of class I heat shock proteinRecName: Full=Heat-inducible transcription repressor HrcA; chromosome CDS2123146 1020 + 0.669608
NA Tbd_0469 ATP-dependent DNA helicase RecGSubName: Full=ATP-dependent DNA helicase RecG; Flags: Precursor; chromosome CDS491230 2037 - 0.703485
NA Tbd_1163 Iron-sulphur cluster assembly transcription factor IscRSubName: Full=Iron-sulphur cluster assembly transcription factor IscR; chromosome CDS1217456 462 + 0.632035
NA Tbd_1984 Possible Transcriptional Regulator, TetR familySubName: Full=Possible Transcriptional Regulator, TetR family; chromosome CDS2074296 591 - 0.646362
NA Tbd_0073 Possible Transcriptional Regulator, AsnC familySubName: Full=Possible Transcriptional Regulator, AsnC family; chromosome CDS75454 444 - 0.675676
NA Tbd_0608 exoribonuclease IIRecName: Full=Ribonuclease R; Short=RNase R; EC=3.1.13.1; chromosome CDS636269 2277 + 0.647782
NA Tbd_1399 Two Component Transcriptional Regulator, LuxR familySubName: Full=Two Component Transcriptional Regulator, LuxR family; chromosome CDS1478925 660 - 0.645455
NA Tbd_0050 Transcriptional Regulator, IclR familySubName: Full=Transcriptional Regulator, IclR family; chromosome CDS52821 774 + 0.696382
NA Tbd_0393 NusG antitermination factorRecName: Full=Transcription termination/antitermination protein NusG; chromosome CDS421199 564 + 0.617021
NA Tbd_2301 Transcriptional Regulator, GntR familySubName: Full=Transcriptional Regulator, GntR family; chromosome CDS2373713 729 - 0.640604
NA Tbd_0670 Two Component Transcriptional Regulator, LuxR familySubName: Full=Two Component Transcriptional Regulator, LuxR family; chromosome CDS711144 798 + 0.619048
NA Tbd_0679 Possible Cold-shock DNA-binding domain proteinSubName: Full=Possible Cold-shock DNA-binding domain protein; chromosome CDS720925 207 + 0.545894
NA Tbd_2166 Protein of unknown function DUF193RecName: Full=Transcriptional repressor NrdR; chromosome CDS2251542 477 + 0.662474
NA Tbd_2815 DEAD/DEAH box helicaseSubName: Full=DEAD/DEAH box helicase; chromosome CDS2896265 1602 - 0.698502
NA Tbd_0933 DEAD/DEAH box helicaseSubName: Full=DEAD/DEAH box helicase; chromosome CDS988978 2799 + 0.626652
NA Tbd_2786 Two Component Transcriptional Regulator, LuxR familySubName: Full=Two Component Transcriptional Regulator, LuxR family; chromosome CDS2867097 633 + 0.63981
NA Tbd_2670 Metal dependent phosphohydrolase, HD regionSubName: Full=Metal dependent phosphohydrolase, HD region; chromosome CDS2743877 1035 + 0.676328
NA Tbd_2328 probable transcriptional regulatorSubName: Full=Probable transcriptional regulator; chromosome CDS2401857 852 + 0.672535
NA Tbd_0228 Transcriptional Regulator, MarR familySubName: Full=Transcriptional Regulator, MarR family; chromosome CDS250056 579 + 0.670121
NA Tbd_0997 helicase c2SubName: Full=Helicase c2; chromosome CDS1064266 1932 + 0.677019
NA Tbd_0216 Two component Transcriptional regulator, Winged helix familySubName: Full=Two component Transcriptional regulator, Winged helix family; chromosome CDS236782 693 + 0.670996
NA Tbd_2736 rhodanese-like proteinRecName: Full=Sulfurtransferase; chromosome CDS2817289 684 - 0.653509
NA Tbd_0732 RNA polymease sigma-54 factor proteinRecName: Full=RNA polymerase sigma-54 factor; chromosome CDS774818 1431 - 0.700908
NA Tbd_1516 hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1603840 363 - 0.592287
NA Tbd_1483 peptidase S24, LexA repressorRecName: Full=LexA repressor; EC=3.4.21.88; chromosome CDS1570775 786 - 0.659033
NA Tbd_0475 Serine/Threonine protein kinaseSubName: Full=Serine/Threonine protein kinase; chromosome CDS497701 945 + 0.621164
NA Tbd_2575 ribonuclease IISubName: Full=Ribonuclease II; chromosome CDS2649152 1860 + 0.659677
NA Tbd_1419 Possible Transcriptional Regulator, TetR familySubName: Full=Possible Transcriptional Regulator, TetR family; chromosome CDS1509746 663 + 0.686275
NA Tbd_1700 Serine/Threonine protein kinaseSubName: Full=Serine/Threonine protein kinase; chromosome CDS1791286 1278 + 0.654147
NA Tbd_1559 Transcriptional antiterminator, RofSubName: Full=Transcriptional antiterminator, Rof; chromosome CDS1642692 228 - 0.684211
NA Tbd_0136 Two component Transcriptional regulator, Winged helix familySubName: Full=Two component Transcriptional regulator, Winged helix family; Flags: Precursor; chromosome CDS145612 663 - 0.695324
NA Tbd_1836 Sigma-24 (FecI)SubName: Full=Sigma-24 (FecI); chromosome CDS1934951 576 - 0.652778
NA Tbd_1290 Two Component Transcriptional Regulator, LuxR familySubName: Full=Two Component Transcriptional Regulator, LuxR family; chromosome CDS1360804 630 + 0.62381
NA Tbd_1116 transcriptional regulatory protein, LysR familySubName: Full=Transcriptional regulatory protein, LysR family; chromosome CDS1172671 951 - 0.690852
NA Tbd_1129 GreA/GreB family elongation factorRecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; chromosome CDS1185577 477 + 0.649895
NA Tbd_1733 DEAD/DEAH box helicaseRecName: Full=ATP-dependent RNA helicase RhlE; EC=3.6.4.13; chromosome CDS1817343 1434 - 0.690377
NA Tbd_1338 Transcriptional Regulator, MerR familySubName: Full=Transcriptional Regulator, MerR family; chromosome CDS1421275 408 - 0.620098
NA Tbd_1736 Putative Transcriptional Regulator, ArsR familySubName: Full=Putative Transcriptional Regulator, ArsR family; chromosome CDS1821747 396 - 0.676768
NA Tbd_2178 Possible Transcriptional Regulator, TetR familySubName: Full=Possible Transcriptional Regulator, TetR family; chromosome CDS2262042 546 - 0.664835
NA Tbd_1588 Two Component Transcriptional Regulator, LuxR familySubName: Full=Two Component Transcriptional Regulator, LuxR family; chromosome CDS1673561 648 + 0.637346
NA Tbd_2822 Possible Transcriptional RegulatorSubName: Full=Possible Transcriptional Regulator; chromosome CDS2904045 297 - 0.552189
NA Tbd_0037 transcription termination factor RhoRecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; chromosome CDS38806 1260 + 0.636508
NA Tbd_0698 NusA antitermination factorSubName: Full=NusA antitermination factor; chromosome CDS739006 1479 - 0.647059
NA Tbd_2086 ribonuclease IIIRecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; Short=RNase III; chromosome CDS2178804 681 - 0.69163
NA Tbd_1654 Sigma-24 (FecI)SubName: Full=Sigma-24 (FecI); chromosome CDS1737191 498 - 0.664659
NA Tbd_0533 Sigma-54 factor transcription regulator proteinRecName: Full=RNA polymerase sigma-54 factor; chromosome CDS557855 1437 - 0.663187
NA Tbd_1717 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS1803190 945 - 0.628571
NA Tbd_2739 transcription regulatory protein, ArsR familySubName: Full=Transcription regulatory protein, ArsR family; chromosome CDS2820239 663 - 0.677225
NA Tbd_1639 Putative Anti-Sigma-28 factor, FlgMSubName: Full=Putative Anti-Sigma-28 factor, FlgM; chromosome CDS1723810 297 + 0.643098
NA Tbd_0813 putative acetyltransferaseSubName: Full=Putative acetyltransferase; Flags: Precursor; chromosome CDS854399 486 - 0.691358
NA Tbd_1347 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS1427663 438 - 0.666667
NA Tbd_2570 Two Component Transcriptional Regulator, LuxR familySubName: Full=Two Component Transcriptional Regulator, LuxR family; Flags: Precursor; chromosome CDS2643729 675 + 0.677037
NA Tbd_0066 GreA/GreB family elongation factorSubName: Full=GreA/GreB family elongation factor; chromosome CDS69293 417 - 0.690647
NA Tbd_2579 conserved hypothetical proteinRecName: Full=UPF0301 protein Tbd_2579; chromosome CDS2655467 558 + 0.636201
NA Tbd_0838 RNA polymerase sigma-70 factorRecName: Full=RNA polymerase sigma factor RpoS; AltName: Full=Sigma S; AltName: Full=Sigma-38; chromosome CDS888316 951 + 0.651945
NA Tbd_1362 transcriptional regulator, TetR familySubName: Full=Transcriptional regulator, TetR family; Flags: Precursor; chromosome CDS1441852 420 - 0.685714
NA Tbd_2395 Putative Transcriptional Regulator, ArsR familySubName: Full=Putative Transcriptional Regulator, ArsR family; chromosome CDS2468373 330 + 0.587879
NA Tbd_0661 hypothetical proteinSubName: Full=Uncharacterized protein; Flags: Precursor; chromosome CDS701770 546 - 0.692308
NA Tbd_0231 Response regulator receiver domain protein (CheY)SubName: Full=Response regulator receiver domain protein (CheY); chromosome CDS253043 765 + 0.679739
NA Tbd_2196 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS2276489 891 - 0.667789
NA Tbd_2611 Two component Transcriptional regulator, Winged helix familySubName: Full=Two component Transcriptional regulator, Winged helix family; Flags: Precursor; chromosome CDS2685767 702 - 0.675214
NA Tbd_0336 Protein of unknown function UPF0074SubName: Full=Uncharacterized protein; chromosome CDS356158 465 + 0.615054
NA Tbd_2690 Two Component Transcriptional Regulator, Fis familySubName: Full=Two Component Transcriptional Regulator, Fis family; chromosome CDS2770448 540 + 0.681481
NA Tbd_2457 Transcriptional Regulator, Fis familySubName: Full=Transcriptional Regulator, Fis family; chromosome CDS2528181 240 + 0.604167
NA Tbd_2354 Two component Transcriptional regulator, Winged helix familySubName: Full=Two component Transcriptional regulator, Winged helix family; chromosome CDS2428761 708 - 0.675141
NA Tbd_2070 Possible Transcriptional RegulatorSubName: Full=Possible Transcriptional Regulator; chromosome CDS2163707 225 - 0.635556
NA Tbd_2237 Two Component Transcriptional Regulator, LuxR familySubName: Full=Two Component Transcriptional Regulator, LuxR family; chromosome CDS2315267 636 - 0.605346
NA Tbd_2323 oxidative stress transcriptional regulatorSubName: Full=Oxidative stress transcriptional regulator; chromosome CDS2397821 906 - 0.697572
NA Tbd_0816 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS858803 786 + 0.559796
NA Tbd_1942 Serine/Threonine protein kinaseSubName: Full=Serine/Threonine protein kinase; chromosome CDS2035564 1866 - 0.689711
NA Tbd_0855 Possible Cold-shock DNA-binding domain proteinSubName: Full=Possible Cold-shock DNA-binding domain protein; chromosome CDS904373 207 - 0.555556
NA Tbd_0398 DNA-directed RNA polymerase, beta subunitRecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; chromosome CDS424459 4080 + 0.634069
NA Tbd_2307 conserved hypothetical protein-putative acetyltransferaseSubName: Full=Uncharacterized protein; chromosome CDS2378087 420 - 0.661905
NA Tbd_2464 Two Component Transcriptional Regulator, LuxR familySubName: Full=Two Component Transcriptional Regulator, LuxR family; chromosome CDS2537429 666 + 0.663664
NA Tbd_1101 DEAD/DEAH box helicaseSubName: Full=DEAD/DEAH box helicase; chromosome CDS1160123 1383 + 0.676067
NA Tbd_1255 Possible Transcriptional Regulator, TetR familySubName: Full=Possible Transcriptional Regulator, TetR family; chromosome CDS1317849 603 - 0.650083
NA Tbd_2604 transcriptional regulator, LysR familySubName: Full=Transcriptional regulator, LysR family; chromosome CDS2679919 906 + 0.698676
NA Tbd_2014 Protein of unknown function UPF0074SubName: Full=Uncharacterized protein; chromosome CDS2104399 471 - 0.626327
NA Tbd_1892 conserved hypothetical proteinSubName: Full=Uncharacterized protein; chromosome CDS1991361 267 - 0.610487
NA Tbd_0351 Transcriptional Regulator, LuxR familySubName: Full=Transcriptional Regulator, LuxR family; chromosome CDS369849 777 + 0.602317
cbbR1 Tbd_2625 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS2697966 942 + 0.657113
cbbR2 Tbd_2639 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS2714438 909 + 0.667767
cbbR3 Tbd_2651 transcriptional regulatorSubName: Full=Transcriptional regulator; chromosome CDS2724791 951 + 0.648791