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2024-05-08 04:07:30

Gene list

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COG category: Transcription
Organism: Thiobacillus denitrificans ATCC 25259, ATCC 25259

Number of genes found: 127

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Show UniProt / TrEMBL protein name View in Fasta format (DNA) View in Fasta format (Protein)  

 
Thiobacillus denitrificans ATCC 25259, ATCC 25259
NameLocus tagProduct / DescriptionGenomic elementTypeBeginLengthStrandGC-content
NA Tbd_1077 Predicted transcriptional regulatorchromosome CDS1136104 1347 - 0.457313
NA Tbd_2354 Two component Transcriptional regulator, Winged helix familychromosome CDS2428761 708 - 0.675141
NA Tbd_0461 Putative transcriptional acitvator, Bafchromosome CDS484682 735 + 0.693878
NA Tbd_2070 Possible Transcriptional Regulatorchromosome CDS2163707 225 - 0.635556
NA Tbd_1347 transcriptional regulatorchromosome CDS1427663 438 - 0.666667
NA Tbd_2323 oxidative stress transcriptional regulatorchromosome CDS2397821 906 - 0.697572
NA Tbd_2736 rhodanese-like proteinchromosome CDS2817289 684 - 0.653509
NA Tbd_2464 Two Component Transcriptional Regulator, LuxR familychromosome CDS2537429 666 + 0.663664
NA Tbd_0037 transcription termination factor Rhochromosome CDS38806 1260 + 0.636508
NA Tbd_2301 Transcriptional Regulator, GntR familychromosome CDS2373713 729 - 0.640604
NA Tbd_0136 Two component Transcriptional regulator, Winged helix familychromosome CDS145612 663 - 0.695324
NA Tbd_0399 RNA polymerase I subunit Achromosome CDS428560 4197 + 0.649273
NA Tbd_1275 conserved hypothetical proteinchromosome CDS1341679 432 + 0.724537
NA Tbd_2032 Negative regulator of class I heat shock proteinchromosome CDS2123146 1020 + 0.669608
NA Tbd_1559 Transcriptional antiterminator, Rofchromosome CDS1642692 228 - 0.684211
NA Tbd_2086 ribonuclease IIIchromosome CDS2178804 681 - 0.69163
NA Tbd_0679 Possible Cold-shock DNA-binding domain proteinchromosome CDS720925 207 + 0.545894
NA Tbd_0430 DNA-directed RNA polymerase, alpha subunitchromosome CDS449718 981 + 0.637105
NA Tbd_2275 hypothetical proteinchromosome CDS2346487 2709 - 0.613511
NA Tbd_1588 Two Component Transcriptional Regulator, LuxR familychromosome CDS1673561 648 + 0.637346
NA Tbd_2178 Possible Transcriptional Regulator, TetR familychromosome CDS2262042 546 - 0.664835
NA Tbd_1653 Predicted transmembrane transcriptional regulator (anti-sigma factor)chromosome CDS1736433 762 - 0.7021
NA Tbd_1028 Transcriptional Regulator, MarR familychromosome CDS1094753 441 + 0.70068
NA Tbd_0855 Possible Cold-shock DNA-binding domain proteinchromosome CDS904373 207 - 0.555556
NA Tbd_0838 RNA polymerase sigma-70 factorchromosome CDS888316 951 + 0.651945
NA Tbd_0345 sigma-70 factorchromosome CDS363361 846 - 0.641844
NA Tbd_1758 GTP diphosphokinase, RelA/SpoT proteinchromosome CDS1848989 2169 - 0.68142
NA Tbd_0050 Transcriptional Regulator, IclR familychromosome CDS52821 774 + 0.696382
NA Tbd_0469 ATP-dependent DNA helicase RecGchromosome CDS491230 2037 - 0.703485
NA Tbd_1836 Sigma-24 (FecI)chromosome CDS1934951 576 - 0.652778
NA Tbd_1383 Hydrogenase accessory protein HypBchromosome CDS1461479 807 + 0.662949
NA Tbd_0472 RNA polymerase, omega subunitchromosome CDS495868 204 - 0.642157
NA Tbd_1180 RNA polymerase sigma-70 factorchromosome CDS1240327 711 + 0.624473
NA Tbd_0816 conserved hypothetical proteinchromosome CDS858803 786 + 0.559796
NA Tbd_0038 hypothetical proteinchromosome CDS40112 114 + 0.640351
NA Tbd_2457 Transcriptional Regulator, Fis familychromosome CDS2528181 240 + 0.604167
NA Tbd_1892 conserved hypothetical proteinchromosome CDS1991361 267 - 0.610487
NA Tbd_2681 Predicted transcriptional regulatorchromosome CDS2756352 1905 + 0.644619
NA Tbd_1483 peptidase S24, LexA repressorchromosome CDS1570775 786 - 0.659033
NA Tbd_1749 Two component Heavy metal response Transcriptional regulator, Winged helix familychromosome CDS1840147 729 + 0.644719
NA Tbd_2389 Possible Transcriptional Regulator, TetR familychromosome CDS2462160 615 + 0.62439
NA Tbd_2690 Two Component Transcriptional Regulator, Fis familychromosome CDS2770448 540 + 0.681481
NA Tbd_0475 Serine/Threonine protein kinasechromosome CDS497701 945 + 0.621164
NA Tbd_1424 Putative Transcriptional Regulator, ArsR familychromosome CDS1514572 477 + 0.656184
NA Tbd_1639 Putative Anti-Sigma-28 factor, FlgMchromosome CDS1723810 297 + 0.643098
NA Tbd_1287 Two component Transcriptional regulator, Winged helix familychromosome CDS1355283 699 + 0.685265
NA Tbd_2307 conserved hypothetical protein-putative acetyltransferasechromosome CDS2378087 420 - 0.661905
NA Tbd_2822 Possible Transcriptional Regulatorchromosome CDS2904045 297 - 0.552189
NA Tbd_1014 Transcriptional Regulator, MerR familychromosome CDS1082945 366 + 0.620219
NA Tbd_1654 Sigma-24 (FecI)chromosome CDS1737191 498 - 0.664659
NA Tbd_0348 Two component Transcriptional regulator, Winged helix familychromosome CDS366627 648 - 0.658951
NA Tbd_2237 Two Component Transcriptional Regulator, LuxR familychromosome CDS2315267 636 - 0.605346
NA Tbd_0393 NusG antitermination factorchromosome CDS421199 564 + 0.617021
NA Tbd_0073 Possible Transcriptional Regulator, AsnC familychromosome CDS75454 444 - 0.675676
NA Tbd_1249 RNA polymerase sigma-70 factorchromosome CDS1311870 741 + 0.647773
NA Tbd_2166 Protein of unknown function DUF193chromosome CDS2251542 477 + 0.662474
NA Tbd_1942 Serine/Threonine protein kinasechromosome CDS2035564 1866 - 0.689711
NA Tbd_2014 Protein of unknown function UPF0074chromosome CDS2104399 471 - 0.626327
NA Tbd_2285 Possible Transcriptional Regulator, Fis familychromosome CDS2358643 930 - 0.690323
NA Tbd_1516 hypothetical proteinchromosome CDS1603840 363 - 0.592287
NA Tbd_2786 Two Component Transcriptional Regulator, LuxR familychromosome CDS2867097 633 + 0.63981
NA Tbd_0398 DNA-directed RNA polymerase, beta subunitchromosome CDS424459 4080 + 0.634069
NA Tbd_2815 DEAD/DEAH box helicasechromosome CDS2896265 1602 - 0.698502
NA Tbd_0471 Metal dependent phosphohydrolase, HD regionchromosome CDS493680 2217 - 0.662607
NA Tbd_1733 DEAD/DEAH box helicasechromosome CDS1817343 1434 - 0.690377
NA Tbd_0997 helicase c2chromosome CDS1064266 1932 + 0.677019
NA Tbd_1399 Two Component Transcriptional Regulator, LuxR familychromosome CDS1478925 660 - 0.645455
NA Tbd_0533 Sigma-54 factor transcription regulator proteinchromosome CDS557855 1437 - 0.663187
NA Tbd_2570 Two Component Transcriptional Regulator, LuxR familychromosome CDS2643729 675 + 0.677037
NA Tbd_0351 Transcriptional Regulator, LuxR familychromosome CDS369849 777 + 0.602317
NA Tbd_2095 Sigma-24 (FecI)chromosome CDS2186163 597 - 0.59129
NA Tbd_2267 Transcriptional Regulator, MerR familychromosome CDS2339159 399 + 0.719298
NA Tbd_0231 Response regulator receiver domain protein (CheY)chromosome CDS253043 765 + 0.679739
NA Tbd_2388 Carbamoyl-phosphate synthase L chain, ATP-bindingchromosome CDS2460031 1971 + 0.623541
NA Tbd_0732 RNA polymease sigma-54 factor proteinchromosome CDS774818 1431 - 0.700908
NA Tbd_1656 transcription-repair coupling factorchromosome CDS1738365 3441 + 0.674513
NA Tbd_0482 Possible Transcriptional Regulator, TetR familychromosome CDS503804 642 + 0.661994
NA Tbd_1255 Possible Transcriptional Regulator, TetR familychromosome CDS1317849 603 - 0.650083
NA Tbd_2524 conserved hypothetical proteinchromosome CDS2595958 504 + 0.678571
NA Tbd_1362 transcriptional regulator, TetR familychromosome CDS1441852 420 - 0.685714
NA Tbd_0608 exoribonuclease IIchromosome CDS636269 2277 + 0.647782
NA Tbd_2604 transcriptional regulator, LysR familychromosome CDS2679919 906 + 0.698676
NA Tbd_1116 transcriptional regulatory protein, LysR familychromosome CDS1172671 951 - 0.690852
NA Tbd_0228 Transcriptional Regulator, MarR familychromosome CDS250056 579 + 0.670121
NA Tbd_1101 DEAD/DEAH box helicasechromosome CDS1160123 1383 + 0.676067
NA Tbd_1129 GreA/GreB family elongation factorchromosome CDS1185577 477 + 0.649895
NA Tbd_2216 ROK family proteinchromosome CDS2294222 990 + 0.70101
NA Tbd_1972 transcriptional regulatory protein GntRchromosome CDS2062238 1413 - 0.647558
NA Tbd_0216 Two component Transcriptional regulator, Winged helix familychromosome CDS236782 693 + 0.670996
NA Tbd_0336 Protein of unknown function UPF0074chromosome CDS356158 465 + 0.615054
NA Tbd_2611 Two component Transcriptional regulator, Winged helix familychromosome CDS2685767 702 - 0.675214
NA Tbd_0520 GreA/GreB family elongation factorchromosome CDS549958 564 - 0.679078
NA Tbd_1945 conserved hypothetical proteinchromosome CDS2038631 2403 + 0.692468
NA Tbd_1700 Serine/Threonine protein kinasechromosome CDS1791286 1278 + 0.654147
NA Tbd_2579 conserved hypothetical proteinchromosome CDS2655467 558 + 0.636201
NA Tbd_2196 conserved hypothetical proteinchromosome CDS2276489 891 - 0.667789
NA Tbd_2192 NusB antitermination factorchromosome CDS2273647 438 + 0.639269
NA Tbd_1344 Transcriptional Regulator, XRE familychromosome CDS1425549 777 - 0.6139
NA Tbd_1736 Putative Transcriptional Regulator, ArsR familychromosome CDS1821747 396 - 0.676768
NA Tbd_2677 Possible Transcriptional Regulatorchromosome CDS2752544 213 + 0.591549
NA Tbd_1351 transcriptional regulatorchromosome CDS1429518 441 - 0.673469
NA Tbd_0074 Possible Transcriptional Regulator, AsnC familychromosome CDS75897 1005 - 0.680597
NA Tbd_0661 hypothetical proteinchromosome CDS701770 546 - 0.692308
NA Tbd_0670 Two Component Transcriptional Regulator, LuxR familychromosome CDS711144 798 + 0.619048
NA Tbd_0933 DEAD/DEAH box helicasechromosome CDS988978 2799 + 0.626652
NA Tbd_2670 Metal dependent phosphohydrolase, HD regionchromosome CDS2743877 1035 + 0.676328
NA Tbd_2739 transcription regulatory protein, ArsR familychromosome CDS2820239 663 - 0.677225
NA Tbd_2575 ribonuclease IIchromosome CDS2649152 1860 + 0.659677
NA Tbd_0072 Possible Transcriptional Regulator, AsnC familychromosome CDS74957 501 - 0.704591
NA Tbd_1419 Possible Transcriptional Regulator, TetR familychromosome CDS1509746 663 + 0.686275
NA Tbd_1717 transcriptional regulatorchromosome CDS1803190 945 - 0.628571
NA Tbd_0066 GreA/GreB family elongation factorchromosome CDS69293 417 - 0.690647
NA Tbd_1658 Putative Anti-Sigma-28 factor, FlgMchromosome CDS1743124 309 + 0.656958
NA Tbd_1338 Transcriptional Regulator, MerR familychromosome CDS1421275 408 - 0.620098
NA Tbd_2328 probable transcriptional regulatorchromosome CDS2401857 852 + 0.672535
NA Tbd_1984 Possible Transcriptional Regulator, TetR familychromosome CDS2074296 591 - 0.646362
NA Tbd_2791 Two component Transcriptional regulator, Winged helix familychromosome CDS2871834 666 + 0.701201
NA Tbd_0813 putative acetyltransferasechromosome CDS854399 486 - 0.691358
NA Tbd_0698 NusA antitermination factorchromosome CDS739006 1479 - 0.647059
NA Tbd_1257 Predicted transcriptional regulatorchromosome CDS1319398 666 + 0.675676
NA Tbd_1290 Two Component Transcriptional Regulator, LuxR familychromosome CDS1360804 630 + 0.62381
NA Tbd_2805 chromosome partitioning protein ParBchromosome CDS2885635 855 - 0.705263
NA Tbd_2395 Putative Transcriptional Regulator, ArsR familychromosome CDS2468373 330 + 0.587879
NA Tbd_1163 Iron-sulphur cluster assembly transcription factor IscRchromosome CDS1217456 462 + 0.632035
cbbR1 Tbd_2625 transcriptional regulatorchromosome CDS2697966 942 + 0.657113
cbbR2 Tbd_2639 transcriptional regulatorchromosome CDS2714438 909 + 0.667767
cbbR3 Tbd_2651 transcriptional regulatorchromosome CDS2724791 951 + 0.648791