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# Nitrobacter winogradskyi Nb-255, Nb-255

>Nwi_0826 transcriptional regulator, XRE family
MAFGQTVRFHRNQKGFGLNEFAERLGVSPAYWSRVEREQENPPRDDLVER
VAAILEVKLDDLFCEAGRLPPDLRGDIKAVVTLYRRSRDARNSTSK
>Nwi_1575 polyphosphate glucokinase
MKAARSSRMNPTILAIDVGGSNVKMMTNTDRVPRKFESGPGLTAKEMVRK
IKALTKDWSFDVVSIGYPGPVCGNRPLREPVNLGVGWKGFDFQKAFGKPT
RVVNDALMQALGGYRGGRMLFLGLGTGLGSAMIADGEPEPMELAHLPYRK
GKTYEDYAGKAGRKHSGDKKWRKHVFDIIAQLSAALEPDEVLIGGGNARH
LEKLPPKSRRGDNADAFEGGFRLWDQSSVDARARVR
>Nwi_1918 ribonuclease III
MMDESADIKPVPTSEDVAAPSGTEPVAPAPKKKRARTSTKAIMAAIEQRL
GHTFADISLLTTAFTHVSALKSSRGRCDSYQRLEFLGDHVLGLVVSDMLY
RAFPKADEGELSKRLADLVRKETCIDVAKSLDLQEGVKLGAVGAGAGARL
RRSVLGDICEAVIGAVYLDGGYAAAAAFVERNWLERMRKPVRPLRDPKTV
LQEWAQGKGLPTPVYREVERTGPHHDPRFRVAVELPGLESSEGIGGSKRA
AEKAAASAMIVREGVK
>Nwi_0743 Protein of unknown function UPF0074
MRLTTYSDYALRVLMYLALKSDGLSTIAEIAGSYNVSEAHLMKVVHQLGV
AGYIETVRGRGGGLRLARPVEAIGLAEVIRMTEPDMAVVSCLKPLNAPCK
INPCCVLKRAMERAQQAFMDVLEGYTLADLVVPSGRLSNLLGISPTASTQ
>Nwi_1230 GCN5-related N-acetyltransferase
MGQSLPKPALRPMLPTDVPVLAAIFVASIEELTGDDYSEAQQIAWASAAD
DEDKFGARLSRQLTLVATLQRSPVGFASLKGTDHVDMLYVHPGAVEHGVA
TALCDAIEKLAGARGATSLTVEASDTAEGFFARRGYVAVQRNSVTIGDEW
LANTTMKKTLAAGSPA
>Nwi_1657 DEAD/DEAH box helicase
MSFSHLGLSDKVLAAVAAAGYTSPTPIQDQAIPHVLARRDVLGIAQTGTG
KTAAFVLPMLTLLEKGRARARMPRTLILEPTRELAAQVKEQFDKYGAGQK
LNVALLIGGVSFGDQDLKLTRGVDVLIATPGRLLDHTERGGLLLTGVELL
VIDEADRMLDMGFIPDIERICKLVPFTRQTLFFTATMPNEIRRVTDTFLH
NPEKIEVSRPATTAATVAQSQVSCSREPHEKRELLRRLLREAKELKNAII
FCNRKRDVAIVCKSLQKHGFSAGALHGDMDQSARTASLDQFRKGELPLLV
ASDVAARGLDIPEVSHVLNFDVPYHPDDYVHRIGRTGRAGRTGTAITIVC
PADFKSLAAIEKLTGQAIPQADLPGHDASANEAVVEAGAPAAAAAGRSSR
SRSAPDKGGESYARGGKRESRKPRRSGGDHQRHEAPAVTAAASKAAPPPS
IGRTLAPRREAVSEPGDHSHLPAFLLRPIRARG
>Nwi_0824 hypothetical protein
MVPLRSSEPQGHKETGMDDQVNAQRNGAASAELMQGWMGRREVAEALGIS
TATLQRWQTRRIGPPCVRIGRRVFYRADAFREWMISQERGPVVSKRTGSA
R
>Nwi_1726 Protein of unknown function DUF193
MRCPSCNSLDTQVKDSRPTEDSAVIRRRRVCMACNFRFTTFERVQLRELT
VIKRNGRRVPFDRDKLVRSLQISLRKRPVEPERIETMVSAIVRELESGGE
AEISSETIGEIVMEHLRSLDDVAYVRFASVYRNFREAKDFEAVLGELSSE
DDPRRVPLRK
>Nwi_0111 helix-turn-helix, Fis-type
MNATPDVSPQADRSLLIVEDDKPFLERLSRAMETRGFNVTPCDSVSDGLA
HIGKSAPAFAVVDLRLGDGNGLDVVSALKRERPDARAIVLTGYGNIATAV
TAVKLGAIDYLSKPADADDVVAALLASGTAKSEVPPNPMSADRVRWEHIQ
RIYEMCNRNVSETARRLNMHRRTLQRILAKRAPR
>Nwi_1142 hypothetical protein
MCVAQDIALRTHHLAALRFLAKDPDRIRLIEDENTLAAALCYVDLEKRGF
VTIDNEDGMLVTITPAGLARLGAE
>Nwi_1340 Fec I like protein
MPAYSDRNRSVAPASILDSDNLLDRAIEAHYADIKAAVLRRGCARGLVSD
VVHDLYIKLAEQPDLLKNKRSLCAFLCRSAINLGIDRMRRARLEQHLFSG
TEAEALAVPAETAAPDYGLDVEARLAVLREAITELPARQRAVFILHRLHR
LEPDQIARKLNISRNMVDRHLRRALAHCLDRLLGIE
>Nwi_2084 divergent AAA region
MASVDLSDLLAGTSENLGIEFKAWMDTSNGEVRAKLARHIAALANHGGGY
LIFGVDDKTRKPLGKTEFNLDLFSQDAITGIIKKYLDPRIQVLVEHVVLE
GTTYPVVVIPPHGARPVFAIADGPQDDRNRPVGVT
>Nwi_2375 Cold-shock protein, DNA-binding
MTTGTVKWFNGQKGFGFIQPNDGGNDVFVHISAVERAGLSGLNEGQQVNF
ELKTDKMRGKVSAENLSLA
>Nwi_0615 Trancriptional regulatory protein, LysR family
MHDLNDLYFFVQVVDHGGFAAAARALGIPKSRLSRRMATLEARLGVRLIQ
RSTRRFTVTGIGQDYYRHCVAMLVEAEAAQDLIERSRTKPQGIVRISCPP
PLLYFQVGEMIARFMAECPDVEVHLESTPRRVDVIADGIDIALRVRFPPL
EDNDLVMRVLAESAQRLVASPSLLKKLSHPPVPADLAHLPSIGWQSPHHP
HEWSLDGPDAGTARIPHTPRFITEDMVALRFAALRGIGVGQFPTMMVKAD
LESGALVDVLPDWTPRAGIVHAVFSSRRGLLPSVRALLDFLAAEFAVLTR
ADADISPPHKMR
>Nwi_1922 RelA/SpoT protein
MKGGFRAMKTLGSMTGWPGKRRQMEAATDPVVTAPPPAAPVKPTRPRMMR
QYDLVERVRSYNPDTNEDMLNRAYVYAMKAHGEQIRASGDPYFSHPLEVA
AILTGLKLDDATIVAALLHDTIEDTEATRAEIDNMFGPEIGALVEGLTKL
KRLELVSREAKQAENLRKLLLAIADDVRVLLVKLADRLHNMRTLEFVPPA
SRQRIAEETLDIYAPLAGRMGMQEMREELEDLAFQTLDPEAHGVVAQRLD
ALAERNRNLIGEIESQLTTSLANKGIAARVAGRRKQPFSIWTKMERKSVG
FEQLSDIFGFRVVVPDVEACYRALGVVHMTWPVVPGRFKDYISTPKQNDY
RSIHTTVIGPGNQRVELQLRTEEMDRIAEHGIAAHAFYKDGAGSPTELLN
RESNAFAWLRHTIEVLSESANPEEFLEHTKLELFHDQVFCFTPKGKLIAL
PRHANVIDFAYAVHTDVGNSTVGCKINGKFAPLSSRLQNGDEVEVLTSAA
QSAPPSAWESLAVTGKARAAIRRATRAAVRGQYVSLGRRIVERLFIRAKI
EYADDKLTGALPRLARATIEDVMASVGRGEMRAADVARAMYPDYKEERVG
GPGVKKSLTAKLKLKTPLDPARSPSVIPIGGINSDLPIKFAPNGGAVPGD
RIVGIVTPGEGITIYPIQSPALTDFEEEPERWLDVRWDVDDTTPQRFPAR
IVLDSLNEPGSLAQVATVIAEHDGNIDNISMTRRSPDFTEMTIDLEVYDL
KHLSAIIAQLRAKDVVARIERVNG
>Nwi_1351 DNA-directed RNA polymerase beta' subunit/160 kD subunit
MNQEVMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTF
KPERDGLFCARIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRR
ERMGHIELAAPVAHIWFLKSLPSRIGLLLDMTLKDLERILYFEYYVVLEP
GLTALKDRQLLSEEEYLRAQDEYGQDSFTAMIGAEAIRELLKGLELERLE
AELRAEMQATESDIKHKKLAKRLKIVEAFRFSGNKPEWMILTVVPVIPPD
LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVD
YSGRSVIVVGPELKLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAK
KLVEKERPEVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPTLIEGKAIQ
LHPLVCAAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNILHPANGQP
IIVPSQDIVLGLYYLSIMREGLPGEGKVFGDMAELEHALHSGVIHLHTSI
KYRWDQTDENGEPIKRLIDTTAGRVMLGQVLPKSQKISFDAINKLMTKRE
ISGVIDQVYRHCGQKETVIFCDRIMALGFYNAFKAGISFGKDDMVVPHGK
WKIVDTTRALAKDFEQQYNDGLITHGEKYNKVVDAWSKATEEIAKEMMKE
ISSTKKDAKGIEAQINSIYMMAHSGARGSPAQMRQLAGMRGLMAKPSGEI
IETPIISNFKEGLSVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVA
QDCIITQDDCGTKLGIKMRAIVDAGTVVASLGSRILGRTACEDIRNPASN
EVLIERNTLMEESHVDQISKAGIQEVKIRSALTCELINGICGKCYGRDLA
RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQINEQSVIESNFD
GKITIRNKAIARNGEGHLVAMVRNMVVAVVDADGTERATHRIQYGARMHV
DEGDMVKRGQRIAEWDPYTRPVLTELEGTIGFEDLIEGQSISETLDESTG
IAKRIVIDWRGTRGGADLRPAIVIKGKDGKVLKLPRGGDARYMLSVDAIL
SVDVGAKVKPGDILARISTESAKTRDITGGLPRVAELFEARRPKDAAIIA
EIAGTIRFGRDYKNKRRISIEPVDQEEETREYLIPKGKHIHLQDGDIVEK
GDFIVDGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVI
VRQMLQKVEIIDQGETDMISGEQIDKIEFDRLNLKAQEEGKKIATGTPVL
LGITKASLQTRSFFSAASFQETTRVLTEAAVNGKVDPLEGLKENVIVGRL
IPAGTGASMAKIREVAVKRDRLILDEREKQAAIVPSAPEAEPLALPPAE
>Nwi_2331 Guanosine polyphosphate pyrophosphohydrolases/synthetases
MMALSKLYDEALVYASDLHRTQVRKGSSTPYIAHLLSVSSRVLSAGGTEV
QAIAGLLHDTAEDQGGQATLDEVRKRFGSDVAQIVADCTDSWVEPTPAWR
PRKEVYLSLLPKKPTSSLLVPCRQGRQCRSDTERLSQHRRRIVAPLYRWA
RRDHLVLPRAQ
>Nwi_2986 transcriptional regulator, XRE family
MASDPGKKLFVGPRFRRVRQQLGLSQTQFAEGLGISPSYVNLIERNQRPV
TAQILLRLAETYDLDLRDLATADEDRFFAELNEVFSDPLFRQIDIPRQEL
RDLAELCPGVTHALQRLYAAYTEARRGETLAAAQFAGRDDSTGARFEADP
IERVRDLIEANRNYFPELEQAAEALRDEIDVPAQDLFAALSARLREKHSI
QTRIMPVDIMRETLRRFDRHRRQLLISELVDGPGRAFQLAFHIALAECTP
VLDAIIARAGALDDTSRQLYRITLANYFAGCALMPYQPFLAAAESLGYDL
HVLAQRFSTGFEQVCHRLTTLQRPNARGVPFFMLRVDNAGNVSKRFSSGT
FPFSKFGGTCPLWNVHSTFDTPDRLLKQVIELPDGTRYFSVAQMVRRPVA
PHPLAQPRFAIGLGCEIRHAARLVYASGMNLDNAEGTPIGINCRLCEREN
CAQRADPPLTRTLILDENTRRMTSFAFSNAREV
>Nwi_1722 NusB antitermination factor
MADIKASIDRKANRRGAARLAAVQALYQMEIGGAGINDVFAEFDSHWLGN
EVEGDRYLPAEAAFFRDVVAGVVRDQVRIDPLIDDALSKSWPLKRVAAIL
RAVLRAGSYELEHRKDVPARVVVSEYVDVAHAFVEKDEAGMVNAVLDQIA
RRFRTGEFARG
>Nwi_0957 Transcriptional regulatory protein, LuxR family
MSANEYRCSDGSHFSHHFTPTDQRVRKTSAPVRVAYPRPPLDPRPQLNVG
SASCGASPPTRRHRQARLQNAAIVNVDSPWQARPKNPAARPSSPPPSTQA
ADLDHNSRTAQCVSGTKDSFDAGPKPAQNSIIIIDERALVRDCLVYCLQA
RYVSHAVFSFATLSDWMKVAGDFPAPSVILLYARTPQKKTLNDIDDIESL
ARVAVSAPLIIVSDVEDGSRVMRAIESGARGYIPTSMTLGIALEAVRLVE
AGGTFVPISVMSSFQNAGHDESQLFTSRQIMVIEALRRGKANKQIAYELG
MCESTVKAHIRHIMRKLKARNRTEVAMMVSSLFERLEHDRAD
>Nwi_1734 FecI like protein
MRLRKNFGRHKRLEADHRDGDSVSASSSLASSRSHHDPFRFRSRLSAAAV
AGRIRLRARDGFRLAFGARMSWDLHRLFLRHARDITAALRRRGLSEETAA
DITQDTFVKVLVSPPGRSVTVHNPAAYLFRVARNLGIDHQRRERVLRRVE
MSAEDFAAIVDPTPSPESAVYDRQKLALTRAALAELPERTRVAFEMHRLD
EMTIAEVAAELGLSTSRVWSLIRDAYDHIDARLTGL
>Nwi_0892 Transcriptional regulatory protein, ArsR family
MRALWQSREQADFAADRLRKFAQPQRLMILSLLREGEKSVTEIDAATGIG
QPALSQQLAELRKAELVTTRRQAKQIYYSLAHESVALCVRSIEAVFNADN
PEQALLNAVRHDLRPESEDVVHGAANFARLR
>Nwi_2840 hypothetical protein
MARRAAARSSAAILRLSSGCGPTPSATKRRAQKGWSPMKGQIAVGLAIDA
KDEKAARWYERFGAMPLLDSSPLSLILPFKTIIDALDAAQSE
>Nwi_3054 Cold-shock protein, DNA-binding
MAKGTVKWFNPTKGYGFIQPAGGGKDVFVHISAVERAGLSTLNEGQTVEF
EEVANRGKTSAENLKV
>Nwi_2883 Fec I like protein
MLGTLVQELQQTEEGRLRRFFQRRFRNRADAADATQETFLRLLASAQRSL
IENPQAYLFRTARNIAVDQERLQQRRAQVECPITDEKAVLNIPCDAPSPE
MALIDKERLHLFEQALIGLPERPRKVLLLRRIEGWSYPAIAQHLGVSPNT
VYNDVRLAMGHCMTAMERPKRG
>Nwi_1907 Transcriptional regulatory protein, MarR family
MKAVAKAHEPAEQVAGQAPVQSLYLEALTLVERLHRRLLDVIKDEFDRRG
RADINSVQALLLYNIGDKELTAGELRTRGYYLGSNVSYNLKKLVELGFLD
HQRSRVDRRSVRIRLTAQGQEIRRIVDALYQKHVKTVEQVGGISNEEFAT
LNKSLHRLERFWTDQILYRL
>Nwi_1923 RNA polymerase, omega subunit
MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTIDRDNDKNPVVAL
REIAEQTISPEDMREELVHSLQKFVEVDEPESDTVPLIGSAGASVDADDT
EVAVERMTEEELLKGLEGLAPPEEQPEEDE
>Nwi_2051 Fec I like protein
MDTAATTQSDDDLMSAYLRHWKALCAHLRKRTGSQELAEDALQETWLRLA
GMKGDAAAIQDHHAFILRVAGNIAIDLVRRERRHAVHCVSDETLLAAVAD
NMPSPEVCVIDRDQLRLLALALARLPAKPRAALLLSRCDGLSHREIGARL
KVSESMVAKYLGQALRHCRDHYRHQP
>Nwi_0502 OmpA/MotB
MRGFFRWSSKWWPGVIPLTVLWVLAAWTTTAPLEADLSEQTAVALKDSVL
DKTAISAAGRDITFSADAFSEQERSNAVASVETVPGVRRVNDRTALVAEA
KPFVWTIERGVGRVTLGGSAPLPVVRNKLLDAARARFAGVDIADRMDLKR
GAPPRFEAAAILLIGETSKLKNGKATISDLTVNLSGMARELGGREAIAAA
LKNLPEGYSVADDIQAPPYVFEANKDPVSGVLTLTGYVPDNAVHAAIVAS
AGRKFGEKIVDKLKASLGAPAGFDAVVTRALRSLSRLSTGRLVVSDRNVE
LSGDALYDLAGKQIRADLPKDLPRGWETKTDVSIKPSASPVDPTVCQQLF
GELLEKRTIQFEAGQATLHLDSIGLLDQLTETALRCQTATIEIVGHTDSD
GDASFNQTLSERRAQAVVDFLVKAGLPANRFTPMGRGSAQPIATNDTDEG
KAKNRRIDFIVRQ
>Nwi_2752 Protein of unknown function DUF179
MKPARKGPGRDRRHADDADMDIADTDTYDRNYLDGQLLIAMPVMEDERFA
RSVIYVCAHSSEGAMGIILNRPAGSVDFSDLLVQLDIIKRADLIKLPETA
ETMKVMKGGPVETGRGFVLHSSDFFIEDATLPIDEGICLTATLDILEAIA
KGAGPKHAILALGYAGWAPGQLETEIQDNGWLHCPADQDLIFGRDIEDKY
VRALHKIGIDPGMLSNEAGHA
>Nwi_2018 GCN5-related N-acetyltransferase
MPELSAEAKGQWRPMSSADLPRVMAIAGQVHPAFPEDGEIFAERLRLYAG
GCLVCRAGSDIGGYVISHPWRALDPPALNSRLGELPGDPETYYLHDLALL
PQLRATGAASLAVSQALARAGSEKLATVSLVAVNGSAGFWRRHGFRAIPL
DAIGADSTLARKLRGYSKAAAFMVRQL
>Nwi_2933 ParB-like nuclease
MSDPVSVASSSRLAVVYRPVNDLTPDPRNARTHPKRQIDQLRASIKEFGF
TNPILIDPEGHIIAGHGRLQAARAIGIAEVPTIALAGLSEPQKRALRIAD
NKIALNAGWDLEILQCPPSGLLRQFRSFREGRISGSSQPIWSADETEIRA
GESTGRAGREGHPPGNAPVVMISVAAL
>Nwi_0362 Transcriptional regulatory proteins, AsnC/Lrp family
MSDIAPQIIETGRRLDAIDRKILTVLQEDASLSVAEIGDRVGLSSTPCWK
RIQRLEADGIILRRVALVDQNKIGLGISVFVSVESGDHSDVWLKKFADAI
SAMPEVMELYRMAGDVDYMLRVVVADMASYDLFYKKLISSVALKNVTSRF
AMEKIKSVTALPVPALSAA
>Nwi_0723 hypothetical protein
MQETFLKLLTAKPTAPVDNVQAYIFRTANNLSIDLARRQRLMPLVDNSDD
VLNRLSASDRIRNGSMILI
>Nwi_1609 Cold-shock protein, DNA-binding
MGSDGFESRKFAGPAVSDPLGSKEFSGTNDREAGAGPFAGLGESPANIVE
ISGVIKWFDASKGYGFIVPDNGWPDVLLHVTVLRRDGYQTAYEGARLVCD
CVQRAKGYQAFRITSMDESTAIHPAQMLPPRTHVSVTPTSGLERAQVKWF
NRLRGFGFLTRGEGTPDIFVHMETLRRFGITELRPGQFVLVRFGPGSKGM
MAAEVQPETGAPSVSSH
>Nwi_2859 ParB-like nuclease
MNRERIGTMARTSKKTKAVPIATVVEAAADVDVRSVGEAEAVAATESGAE
TVSVAASGETVFIPLNKLKKSPRNARKIPHGEADIEAYAASIAAKGILQN
LVVEPERDEEGQPTGFYFVTIGEGRRLAQLLRAKRKQIKKTEPIRCVIDT
ANDPFEISLDENVTRTAMHPADQFEAFRELAETRGWGAEEIAARFGVTAH
VVKQRLRLGAVSPKLMQVYRDGGLTLDQLMAFAITEDHSRQEQVYESLSY
NRDPSFIRRELMQANVPASDRRAIFIGPESYSEAGGNIVRDLFPEDRGGF
YEDVALLDRLVMEKLESIAFRVRGDEGWKWWEAHIDFPHAHGMRRVYPHP
VELSPQDEADYAAAQEEYDRLSSEYEDADELPDDVDQRFGELEAEIEHID
AKRHAYDVDDICRSGVFVVLDHDGGARVERGFVRPEDEKPEAEEASDGET
VIDRVRVNDDGEVIEDGEDGNHAADLEAEDEYAEEDGKPLSDLLIRDLTA
HRTLGLRLALGGQPDMALIAVTHALAAQTFYHAVDAHCLDIRPNSAHLAS
HADGIEDTAAAKALADRHAGWAADMPRDVADLWGFIAGLDHASVMALFAH
CASQTINAVKLPWERKPRAHATADKLATALALDMTANWTPTVRTYLGRVT
KALILDAVREAVSDEAADRLASVKKQPMAEAAEQLLAGTGWLPPLMRTTP
VAEAESGPVEDIAAPEGNEGFPEAAE
>Nwi_0488 transcriptional regulatory protein, LysR family
MDRIDLFRVFVRVVELASFTRAADALVLPRSSVSAAVRELESRVGARLLH
RTTRKVVPTPDGTAFYKRCLRLLADVEETEALFRQSARRPVGKLKVDVPG
RLGRLIIVPALPDFFARYPDIELDLGVTDRAVNLVEQSVDGVLRVGVLSQ
SGLIARSVGVLPLINVAAPSYLGRHGIPETPDDLDTHLAVRYASPSTGRI
EDWEWIDNGHVRTRVVAGRITVNSAEAYIACALAGLGMIQIPAYDVKPHL
AAGELVEILPHHRAQPFPMTFLYPSRQHRSRRVQVFADWLENLLRERVLH
LDPTQALSV
>Nwi_1081 probable transcriptional regulator
MVPFFVQFKCKLGQSYAVANALAEAEIASEIYSTAGDYDLLAKFYVDNAT
DIGHFINEKVQVIPGIQDTHTIITFKAFGAK
>Nwi_1599 Cold-shock protein, DNA-binding
MQKGTVKWFNPTKGYGFIKPTTGDRDVFVHISAVERAGLSTLDENQTIEY
DLVENRGKTSAENLKIS
>Nwi_0845 conserved hypothetical protein
MPEKTEKTWPRFVRTPEAARLLGLSPRTLEKHRCDGTGPVYHKLGGRVVY
TIADIEAWIDVCARQSTSESAAGQAAGAAG
>Nwi_3045 Fec I like protein
MIARNLRDRGDKARPVTFDVHDLFRRHSKELTRFLRRRVPSADVAADLTQ
EAFLALWAARSRTSIADGHAYLFRTATNLAINHNRRQRILSFVDDPDTAL
ATLADETPSAEQVLLSRQELMIVYATLKEFPPAHRAVFILSRIDGRTFAE
IGRMLDIQPRTAFGHMVRILARMKLRLDEARR
>Nwi_2440 RpoD
MASKAKTLQVREKEKDDKAADAPEKDTADAPSPLLDLSDAAVKKMIKQAK
KRGFVTFDQLNEVLPSDTTSPEQIEDIMSMLSDMGINVSESEDADSEDEN
KEEADEETDNELVEVTQKAVTEVKKSEPGERTDDPVRMYLREMGTVELLS
REGEIAIAKRIEAGREAMIAGLCESPLTFQAIIIWRDELNEGKIFLRDII
DLEATYAGPEAKSSMNPALLGAPGGPGGQPLSADASDGASGEGGAEATVN
APPSAPPSPTPFRAARAAPAGAADREEKIPGAAAEGEMEEDDFDNQMSLA
AIEAELKPKVVETFDKIADSYKKLRRLQEADISNQLQNESLSPNQERRYK
KLKDEIIVEVKSLRLNQARIDSLVEQLYDINKRLVSFEGRLLRLGDSHGV
AREDFLRNYQGSELDPRWLNRVSKLSAKGWKNFVHHEKDRIKELRGEIQQ
LAALTGLEIGEFRKIVQGVQKGEREARQAKKEMVEANLRLVISIAKKYTN
RGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ
ARTIRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKVRK
VLKIAKEPLSLETPVGDEEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTR
VLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALR
KLKHPSRSRKLRSFLDN
>Nwi_0466 peptidase S24
MVMLTHAQIWTALDRLAERAGLSPSGLARRAGLDPTTFNKSKRITSDGRE
RWPSTESVAKALAATGTAIDTFVQFIEDTERAAKAVPLLGFAEAGAGGYF
DDGGFPVGKGWDEVGLPCVNDEHAYALEISGDSMKPAYRDGDVIVVSPGT
PIRRGDRVVVKTRDGEVMVKELKRRTARTIELQSLNPSHANRTLPASEVE
WIARIVWASQ
>Nwi_2869 hypothetical protein
MTAKNSLVQAPPFEVDRALKKLGADLRTARLRRNLTVDATAAKIGTGRRA
ILDAEKGKVSTQVGVYAGLLWAYGLIDRLGDAADPRFDEEGQRLALIQDR
VHARSPKGLDNDF
>Nwi_2722 Transcriptional regulatory protein, TetR family
MSWRKDHRRPERGYHHGNLKEALLQAALGLIAEKGAAGFTFADAARSAGV
SPAAPYRHFRDRDELLASIAQRGFEQFEAVLTRAWDDGRPDTVTAFERVG
RAYLAFARDEPAYYSAMFESGLPTDVNPMLSAASERAFSVIRAAAERLAA
LTPPGAARPPALMMALHIWSMSHGIASLFGRGDAARRKMPMSAEDLLEAG
VLIYLRGLGFPTDRRSPEDSNPPAGRPRGPWDQKSAT
>Nwi_2519 Transcriptional regulatory protein, MarR family
MAGRPEAPDRRSEETRWDIIELLFFAYRDFVGDPDHVLEEFGFGRAHHRV
MHFVHRYPSLTVADLLDVLRITKQSLGRVLKQLLDEGYIVQKAGAADRRQ
RLLFATPKGEALVAQLAGLQTDRIKRALRGLDASDAEVVRQFLLGMIDHD
DPDKVLEAILRADGKMVKA
>Nwi_0565 Transcriptional regulatory protein, MarR family
MFSRTALEAAYLISRLDRLARSGVNVEGLNPAQWEALRYLSRANRFSRTP
AALAGYAGSTRGTISQTLIALEQKGLASRQSSRRDGRSVELALTRRGEAV
LRDDPLRRLADDIAAATGGDAGALLATLQDILSSTIARNGGRAFGVCRTC
RHFRHNAKPGSASPHHCNALGESLSDSDSGAICQEHEPA
>Nwi_1765 putative serine/threonine protein kinases
MPLPKQDAAFLSTNWTEGVLLKRDVFSTVERGRFRTTSGEADAVLRRLDQ
VPWWSYVVARHLFEREREALTLARDLGVGPRLLWSGRSALVRDFIDGVAL
HLARPHGDPSYFRSAKAALRKLHRAGICHNDLAKEQNWLRGSDGNAYLTD
FQLAACFKRRSRLFRIAAYEDLRHLLKHKRTYAPNALTPRERKMLARKSV
IARVWLMTGKKVYQVITRGLFSFTDREGGGRRLVNDAPVLVARIRENPAV
RDAAIVAFADRRSGVGLYAFVEADLPGLEARLRSTLAAAGEPKPPEHIQI
VARLPRGAGGKVRTEILQLIAMNQIDLIEPLITSPADREFLRGILESRKN
LRDRFNFESTDQALPS
>Nwi_0194 negative regulator of class I heat shock protein
MAHHDPIGLIAPNAGLAQLNERSRDIFRQIVESYLATGEPVGSRNISRLI
AVPLSPASVRNVMSDLEQLGLIYAPHTSAGRLPTELGLRFFVDALMQVGD
LTEPERQSIQSQLASVGKAQSVEAALEEALTRLSGLTRTAAVVLTAKSNV
RLKHIEFVRLEPDKALVVLVAEDGQVENRVLTLPSGVPASALTEASNFLN
ARIRGRTLAEARLELETALAQSKAELDQLTQKIVAAGIASWSGGDSDDRQ
LIVRGHANLLEDLHAMEDLERVRLLFDDLETKREVIDLLGRAERADGVRI
FIGSENKLFSLSGSSTIIAPYSDGAGHIVGVLGVIGPTRLNYARVIPMVD
YAARIVSQMLGR
>Nwi_1196 Two-component transcriptional regulator, winged helix family
MVMERQPLDNSSNQMRLLIIEDDRESADYLVKAFREVGHIAELARDGEEG
LSFADGGDYDVLVIDRMLPKRDGLSVIGCLREKGILTPVLILSALGQVDD
RIKGLRAGGDDYLPKPYSFAELLARVEVLSRRHGGRAEETLYRVGDLELD
RLSRRVARGGEELTLQPREFRLLEYLMKHAGQVVTRTMLLENVWDYHFDP
QTNVIDVHISRLRSKIDKGFEQPLLHTIRGAGYMVRSG
>Nwi_2834 hypothetical protein
MIKTDDTIQLFVPLKVRKQNGRPKIMPPANYLPSEDRTQDPHILRAIGRA
WGWRRRMEAGEFNTVTDLAKSVGLAERHVSRQLRLAYLAPGVLKRLVYRR
DVPVVTLLKLTDVAALPWDEQPERVFD
>Nwi_0100 transcription termination factor Rho
MREMKLQDLKAKTPAELVSFAEELGVENASTMRKQELMFAILKQLAIQET
DIIGEGVVEVLSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTI
EGHIRSPKEGERYFALLKVNTLNFEDPEKSKHKVNFDNLTPLFPDQRFRL
ELEDPTRKDLSARVIDIVAPIGKGQRALIVAPPRTGKTVLMQNIAHSITA
NHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVI
EKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDR
KVADKRTFPAIDIARSGTRKEELITDPQLLKKMYVLRRILNPMGTMDAIE
FLLDKLRNTKNNSEFFESMNT
>Nwi_3093 helix-turn-helix protein, CopG
MATMNVSLPDAMKDWVEAQAETGRYANASDYVRDLIRKDQERNDKIAAMQ
RFVDEGLNSGAGNRSKDALFAEAVKRAGTPRGNG
>Nwi_1263 transcriptional regulator, XRE family
MTSGREKFGAFIRREREAREIGLREMAKKIGVSPTYMSKVERDEFTPPTE
DKVRAIAQILECDPDELLAMAGRVPSDLADIIKRQPVEMSALLRTANGLS
ADDLARLSREAGKAKGN
>Nwi_3123 Transcriptional regulatory protein, ArsR family
MYEKQALDAFAALSQETRLRIVRLLVKAGPEGMSAGAIGEAMDSASSSRM
SFHLSHLEHAGLVESRREGRSIIYSAALVTLSSLVEFLMRDCCQGHPEVC
NPAVAALSACCEPKKRGPHV
>Nwi_2450 transcription elongation factor GreA
MVEKVPMTRGGHAALADELKKRQSVDRPRIIEQIAEARAHGDLSENAEYH
AAKEEQSHNEGRIAELEDKLARADIIDVSKLSGDTIKFGATVTLIDEDTD
KKAVWQIVGEAEADAKQGRISITSPLARALIGKKKGSSVEVVAPGGAKAY
EIAKVEWR
>Nwi_1612 conserved hypothetical protein
MSNWSAYWRMPSPKQMEKLAREQRQIQTPDGEPDGWWDSVLNDPRATGAP
RLPIQQCRLNEIPRDVLRVECFRCMRIVEIEKADAIRLYGPHAIWKDVGR
KLLDDGCKHRTGRHEEDGCWPDWTG
>Nwi_0348 Transcriptional regulatory protein
MPTIALVDDDRNILTSVSIALEAEGYRIMTYTDGASALDGFRTSQPDLAI
LDIKMPRMDGMETLRRLRQKSDLPVIFLTSKDEEIDELFGLKMGADDFIR
KPFSQRLLVERVKAVLRRACPKDPAAAPKESDAKALDRGLLRMDPERHTC
TWKNEPVTLTVTEFLILQALATRPGVVKSRNALMDAAYDDQVYVDDRTID
SHIKRLRKKFKVVDDDFEMIETLYGVGYRFKET
>Nwi_2454 Transcriptional regulatory protein, LysR family
MDWDKLKVFHAAAEAGSFTHAGEQLGLSQSAVSRQVGALEQELSVPLFHR
HARGLILTEQGDLLFRTAHQVFMQLQAARAKLADSRERPSGDLKVTTTLG
VGINWLIPRLGEFTSLYPDIRISLALTDEELDLSMREADIAIRTYKPTQP
DLIQRKLFAICFHAYCSTEYVKRFGTPRTLEELSGHRIILLNETQASPHL
QNRNWLIEAARNRSGPHEPYFTVNNIVGLFSACQQGLGIAALPDYLVGEN
NLLVQLFGESDSIQLDTYFVYPEELKSVARVQVFRDFVVSKAQRWPS
>Nwi_2048 Fec I like protein
MTKRPSLSRPSFSRLLNVLMTDRAGVENAVRGRTGEVASADIVQETWLKL
ANHPSDSAIENPSAFVRRVAKNSATDYLRKERRRSALNTEVHDLLYDTED
ELSPERLVIGRQAAECATPSIHCPSSDELRLFRGHGNGGSGSSGFEVRRP
AGDAASVFGGWSGV
>Nwi_2138 Fec I like protein
MSDERSEPKRTWEASLDGLRPRLIRVAYRMLGSVTDAEDVVQEAFLRSLR
VHRDDIRDAEAWLRRVVTRLSLNHLRSARRRRETYIGPWLPEPVIEPMEN
AFDDVTLPLLLALERLSPLERAAFLLHDVFGMSFDEIARTLDRTPAACRQ
LASRARAHVRVARPRFPVPKERGIEIAEAFFAASRSGDIQTLRSLLADDV
TAFADGGGKTGATLEPVVGCDEVARLHEKLAALFAETPSRLIRYGLINGL
PGFVTIEKATMLQTTALELENDKIVAIYVVQNPDKLQHLAGVAVH
>Nwi_0087 Transcriptional regulatory protein
MANARKILIVDDDNDLRDTLVEQLSLHEEFEASAVDTGAKGASAARSCSP
DLVLMDVGLPDTDGREVVRSLRKGGFKAPIIMLTGHDTDSDTILGLESGA
NDYIAKPFRFAVLLARIRAQLRQHEASEDAVFSVGPYSFRPGAKMLTTGN
GKKVRLTEKETAILRFLYRAGQMSVSRDTLLQEVWGYNSGVTTHTLETHI
YRLRQKIEKDAANPEILVTEAGGYKLVP
>Nwi_0094 ParB-like partition protein
MADEARSRLGRGLASLIGDVGGEAAHAERPRVQRKVPIEFLSPNPRNPRR
TFSDVELAELSDSIKQHGVIQPIVVRPVKGMQDRFEIIAGERRWRAAQSA
GLHEVPIVPVDVSDHVALEIAIVENVQREDLNAMEEAQGYHALANEFNRT
QDDIAKIVGKSRSHVANMMRLTKLPDDVRALIASGELSAGHARALIGMPD
PSTAAKRIIAEGLNVRQAEALAHEDGAAERKPQKARADKARKDSDTLALE
KRVSDALGLAVTVDHKDPGGVVQIRYRDLDQLDEILKRLDPKG
>Nwi_0627 Transcriptional regulatory protein, LuxR family
MSRRTLDDTLTFIARVDKASTPAEIADAVVDVARPLGFSHVLAGIIPIPG
MTAEQQISNVVLHRWPKAWSERYFTKGYLFDDPTIQRVNTSTEPFLWSEL
EPTYRNTPAPTRVMGEAREFNLGCGFTVPMITLNGQTAGFSLASERAEVP
SILRGQLQLIAMYAFARALGQKYKPAPVNLTPREMDILQWMAEGKSDWEI
SVILKVSEHLVDKIARQLRAKLNATNRTQTVAVALRHNLIR
>Nwi_0902 hypothetical protein
MPLSAWFGDQCERDGDASAEVAGKRVLLRSSASIPPSRGDPQQSRDFGPS
EQPARPQAFCLVSNGGERLMPWDFHTLFMRHSKEIANALRRRGVSPENAA
DLTQEAFLRLLTAGRPDQTHAIIPAPFFSAPLAICISIRSGASDARRKLP
>Nwi_3009 transcriptional regulator, PadR-like
MTAPSSKGVAEGDLRLVALSLISEAPRHGYDIIQTVEKMTADWFLPSPNV
VHPMLAKLVEERCLTASADPPRLFSITDEGRAYLEQHRDRADAVLNRLKA
LGERVTRWRQALGVAERQKEADADSTEGLLDVLARAAMPRK
>Nwi_2930 Transcriptional regulatory protein, LysR family
MHQFMHLTLRQLQIFDAVVRRRNFTRAADALHLTQPAVSMQMRQLEEQIG
VPLFDYVGKQIQPTDAGRELHRHATLIGAKMRDLTSAMEEFRGVHRGELD
LIVASTANYFMPKLIAAFCASHAKVQVRLQVSNQTHILESLSASNQDLAI
MGQPPEDAELVARGFLDNPLMVIAPPAHPLARRRKIPLTELGCQPFITRE
PDSGTRHAAERHFSRHGVEFHSVMEMSSSEAIKQAVEAGLGLGVLSLHTL
ELELATRRLVTLRVESFPIVRQWFVVHRKGKRLSAVAQSFLAFLTKQARP
LASPKQSPSHSGLQAFGLQQ
>Nwi_0080 hypothetical protein
MSKFRDMLLEEREALLKVYRPLETDIKAMRFEMYEKQQRLAELASDIEKI
NLALKAVEDADKRPQITIMEAVVEVLKDRPEGLTALEILAEINTRYFGDR
IIRSSLSPQLSRLKDRDHKIGLRGKKWFLLPQQPSLFVERRD
>Nwi_2907 Transcriptional regulatory protein, ArsR family
MPGGLTNTIRYSIVHWNIGFSGEMVSDPQWHQLELAAEMLKALADPHRLG
ILLRLSKRELSVGELAEIEQEKVTTMSARLKVLLTAHLVKRRRKGQSVLY
SLADTHVLNLVDNAIEHACEGH
>Nwi_0412 transcription factor CarD
MPSKTARASANTATSKTAASKTVASASKTAASKAGSRTTASKIASAPKVG
SRTSVKPTAKSAAKAAVASKPAVKPVARVGARVEEPKKVLTQRQGFKTGE
FVVYPAHGVGQILAIEEQEIAGAKLELFVINFIKDKMTLRVPTAKVANVG
MRKLSEPGLVKRALETLKGRARIKRTMWSRRAQEYEAKINSGDIVAIAEV
VRDLYRSESQPEQSYSERQLYEAALDRLSREIAVVQHVTETEAVKEIEGQ
LAKSPRRGAKAEAGGEADGDLEAADGDDAAVAA
>Nwi_1187 two component transcriptional regulatory protein
MRLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEAHFLGDSEPYDAVVL
DIGLPKMDGISVLEAWRRGGRTMPVLILTARDRWSDKVQGFDAGADDYVA
KPFHLEEILARMRALLRRSTGHAHSELTCGPVTLDTRTGRVSVGGNPVKM
TSHEYRLLAYLMHHIGRVVSRTELVEHLYDQDFDRDSNTIEVFVGRIRKK
LDVDIIQTVRGLGYLLTPPADAR
>Nwi_2773 Fec I like protein
MPLTDSLRDEILASVPNLRAFAISLSGNGDRADDLVQETLLRALANIDSF
QPGSNLPAWLFTILRNLFRSDYRKRRREVEDSDGNYAKTLKSQPSQNAHL
EFEEFRAALDKLPQDQREALILVGASGFSYEDAAKICGCAVGTIKSRVNR
ARSKLSALLYVEGTEDFGPDDTVRAVIGNR
>Nwi_0894 Sigma 24, ECF subfamily
MTWDLQKLFIRHAREIDRFLRRRGHNAETAADITQDTFLRVLASPPGEAR
TNHNPKAYLYQVSRSLSINHLRRESLIQTTDLDEAGAIADPTPSAEKIIY
SRQCLAQTRKALAELPERTRMAFEMHRLCDKTIQEVADELGVSTSRAWKL
IRNGYRHLLTRVDDF
>Nwi_1803 chromosome segregation and condensation protein ScpB
MASLAEIRVERLEEPETELPASRPEELRLLEALLFASSEPLDQSALAKRM
PDGVDIKSALAQLQADYASRGVNLVRIANKWTFRTAGDLAWLMTRESTET
RRLSRAAIEVLAIIAYHQPVTRAEIEEIRGVVTSKGTLDVLLETGWIKPR
GRRKTPGRPLTFGTTEAFLSQFSLENLGDLPGLEELKGTGLLDSRLPGGF
SVPTPSDDPALRDDEDPLDAGDLELALVPALEAESDNSSSGGTAPTGS
>Nwi_2926 transcriptional regulator, XRE family
MISANQLRAARALLDIDQRQMAELADLSVPTIQRMEASDGVIRGNVDSLM
KLVSALDNAGIELISPDSQSLAGGRGVRLKEHVTRPGIKQPKPFSSRPLE
RTR
>Nwi_2295 GCN5-related N-acetyltransferase
MQAHDRLTELPEKRMEITIRAMRSEDAADIFEIVNQHSFRFWTLALPYEP
FDKVQKWLEPQSPRDLHLSAELDGRVVGASALRPFYGRRAHAAEFWIGVH
EDHSRKGIGSRLLGAMIDAADNWLNIKRIEMTVFTDNVSALALYNKFGFE
IEGTHKAATFRDGMFVDAYCMARLR
>Nwi_1409 Transcriptional regulatory protein, MerR family
MAQERHLDKAPDAFRTISEVAADLDIPQHVLRFWETRFSQIKPMKRSGGR
RYYRPDDVDLLRGIRHLLYSEGYTIRGVQRILKEHGIKSVQGLTEGSSAA
AFGAIEDDIRNTLGEIDEEESGYETEDTEDDEDDGDDGDNGPREREPGVH
RPLRHDLDEVLWSGPDSGAIPGVAAAAIDLTKLKDVLAELVACKQLLDEA
LRDGEP
>Nwi_0922 transcription elongation factor GreA/GreB region
MLDNLKKTHLPAIAISAHDIDRLRHLAEAAIEKYPATAEFLAREIDRAEI
IPADGSLLDDTRDQRWKVNLVTMQSEVTFIDDVSGQKRRVTLVYPEDADV
DAGKISILSPIGAALIGLSAGQSIEFQTPSGGWRSLTVIAVWSYWPRPER
K
>Nwi_1513 transcription-repair coupling factor
MKAFSRSPAESLSPGRPLTLANVAEGAEGLVVSDLARAIKANATRRAAAV
SLTVVCRDGPRMQQLARALEFFASDISVMQFPAWDCQPYDRVSPHGGVLA
QRLTTLARLSRLTGSETPLIILTTVNAILQRVPAREIVASQALSVAPGNV
VPMDSIAAWLEHNGYNRSSTVREPGEYAVRGGILDLFPSNLDHPVRFDFF
GDSLESIRSFDPETQRTLFDVRSLDLVPISEFQFVTETIRRFRMGYVATF
GAPERDDLLYEAVSEGRRYPGMEHWLPLFHERMDTLFDYLDGASIVIEPQ
GEDAASERFKQIADYHEARREPLEQAGGGVPYKPLPPDRLYLTPDEWAKR
LNEAALVRLTPFAMPDESVNIIDAGARQGRNFAPERADTTLNVFESVGSH
IQALQAARKKVVVTLWSEGSRDRMASMLKDHGLLNLTSINTWRTVHATPR
NEVMLGVVGIESGFETESVAVISEQDILGDRLVRPPKASRKLENFISEVT
SLAAGDLVVHVEHGIGRFVGLQTLEVGGAPHDCLELRYANETKLFLPVEN
IELLSRYGSDQANVELDRLGGGGWQARKAKLKSRIREIAGELIRIAAERH
LREAPKLPVQSGLYDEFCARFPYEETEDQLGAIQASLEDLESGKPMDRLV
CGDVGFGKTEVALRAAFAVALDGKQVAVVVPTTLLARQHAKTFTERFRGF
PVNVAQASRLVSPKELAKVKKGIADGSVDIVVGTHALLGKSIKFRDLGLL
VVDEEQHFGVSHKERLKQLRAHVHVLTLSATPIPRTLQLALTGVRDLSII
ASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPRVSDLAEVK
DFLDKHVPEMKVAVAHGQMPPTVIEDIISAFYDGKYDVLLSTTIVESGLD
IPTANTLIVHRSDMFGLAQLYQLRGRVGRSKLRAYALFTLPSKHKITAQA
ERRLKVLQSLETLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQ
SMLEEAIENLKTGVTEIADDRWSPQITIGMPVLIPEDYIADLAVRLSLYR
RLADLDTDDEIDSFAAELRDRFGKLPDEVRYLFKVAAIKAYCRRANVEKV
DAGPKGAVISFRDNKFAQPDRLVYFIRQHGQAAKVRPDMKVVFLQNWETP
EERLMGTTEIMRQLANLAEDRKAA
>Nwi_0881 Transcriptional regulatory protein GntR family
MGSRHDLKLELTGDGERPVFMNIAYSIIREIERGRLKPGDPLPGTRALST
SLKVHRNTVDAAYQELTMQGWLVARPSRGTFVANDLPEPAGGETPPPTLR
APLDPAGGTARPMLRVSDGAPDARLMPATQLARAFRTALTSPAFVGGGDY
SDPRGAIRLRTALSSYLISERGLTASADDMMITRGSQMGLYLAAAALVEP
GEAIAVEEPGYPLAWSAFRAAGARVVGIPVDAHGIDVDRLAAIADREPEL
RAIYVTPHHQYPTTVTLGASRRLKLLDLARRKRLVLIEDDYDHEYRFEGR
PVLPLAARVEAEGVVYLGSLSKLLAPAVRVGYAIAAPAVLTRMADRREAI
DRQGDVPLEQALASLIEDGELRRHTRKARRIYGEKRDLFAAAIRRELGQH
VAFDLPAGGLALWLRLRAGLDAETWAANAAQVGLAVSSGVKFVLDAAHAP
HAFRLGYASLTEIELSRVATLLKRTIDR
>Nwi_0525 Transcriptional regulatory protein
MRVLLIEDDSAVAQSIELMLKSESFNVYTTDLGEEGVDLGKLYDYDIILL
DLNLPDMSGYDVLKQLRVSKIKTPILILSGLAGIEDKVKGLGVGADDYMT
KPFHKDELVARIHAIVRRSKGHAQSVIQTGDLVVNLDTKTVEVGGQRVHL
TGKEYQMLELLSLRKGTTLTKEMFLNHLYGGMDEPELKIIDVFICKLRKK
LANASEGRNFIETVWGRGYVLREPHEDEVRIPA
>Nwi_2885 Transcriptional regulatory protein, MarR family
MRTFSDPTFETTILVRDTCLCLHAQRAARALARRFDDALKPVGLTNGQFS
LLMSLNRPQPPNLGSVAALLAMDRTTLTANLKPLERRRLVETKADPKDGR
ARLLRLTPEGRAVLAEAVPIWRHLHAEIEKELSDPDHLRLELNVLSRSDK
RGGVAG
>Nwi_1549 Transcription antitermination protein nusG
MIGELQRLEIGQFVGTVDLDAVRGPASVPMQPKYWFILRTHPGCERKVMR
EFERRNISAYCPLIAKQQRVVRRVHGSSWTYEIKRLVQVPLFPQLVFVPD
FERVPADIGGVSGWLRFGGWRARIPSEREATSDRVACMADIHALVAIANT
PQSKRAARFEIGALVRIVDGPFRDFSGRIERLDSKGRLKVAIEIFGRLSP
TEMSEAQIEPSPGPTDTCTVREGRKPRRGSFSCR
>Nwi_0409 helicase
MAFSSSIFPPGNGRALGAGVTAVLGPTNTGKTHLAIERMLAHSSGIIGLP
LRLLARELYDKIVDRAGVDSVALVTGEEKIKPARPRFWVSTVEAMPRDLD
VAFLAIDEIQIAADLERGHVFTDRILHRRGRDETLLLGAATMRPIVERIL
PGASIVTRPRLSQLEFAGDRKITRQPRRTAIVAFSADEVYAIAELIRRQR
GGAAVVLGSLSPRTRNAQVEMFQSGDVDYLVATDAVGMGLNLDVDHVAFA
SDRKYDGYQFRRLTPAEFAQIAGRAGRATRNGTFGTTGRCAPFEPELVDA
LQNHTFEAIRTLQWRNSGLDFSSLDALQASLALTPSHEALTRAPIAEDLR
VLDHAARDVEVRDMAQTAAAVERLWDACQIPDYRKIAPAAHAELVTTLFG
FLMRQGRVPDHWFAAQIAQADRSDGDIDTLSARIAQIRTWTFVANRPDWL
ADPEHWRGISREAENKLSDALHQRLTERFVDRRTSVLMRRLRENTMLDTE
IGKTGEVIVEGHVIGRLDGFTFAPDAAEAGSEAKALQAIAQKALAGEIEA
RAEKLSGAPDDQFVLTSDGTIRWTGDAVARLVAADDALHPRLRIISDERL
TGAPREAVQARLDLWLKTHIEKLLGPLFELSKAEDVTGIARGIAFQLVES
LGVLERSRIAAQLKDLDQSSRASLRKYGVRFGAYHIYFPLLLKPAARSLA
SLLWALKQDNVDLSALSSAQHLASSGRTSFPADKLLDRDAYRALGYRQCS
ERAVRVDILERLADLIRPALSWREGTPGEKPAGAFDGRGFVVTQAMTSLA
GTAGEDFASILRALGYRMERCPAPPSATESGALADAAVEAVAAETSESAP
QPAAASVVVPADEGAVSVRADTADAGFVEPEPAPDTDLSGVPAAGLEASV
EVGEEPPAASPPAVEVSEGSDVEETAANEAAPDDSAPVVAGGAVEGDADS
AAMTAPDASPLEADAEPATVEVWRPGGRAVDRRPRHDRNRYRRQQPKTDG
PQAAPADGEGSEGAQGRERYGRSRRRQPTGALAETAPAGSESGPREGKGR
PPRERFKGKGRDRDQDKGRVQGFRKGGREGRSDTGPSHRPYASSAPRERE
PSIDPDSPFAKLAALKDQLAGRKD
>Nwi_0019 transcriptional regulator, XRE family
MSTKAPNPVDKHVGSRVRMRRIMLGMSQEKLGEALGLTFQQVQKYEKGTN
RVGASRIQQISEILQVPVSFLFEGSPGTGVVRTGGMSEAPSPAYVSDFLA
TSEGLALTRAFTRITDAKLRRSIVDMVEQIAAREPSDQR
>Nwi_2140 transcriptional regulator, LysR family
MNQLAAVKSGIGLALLPCYLGEVGVVRALREPIADLEGELWIGTHADLKG
TARVRAFFDIVGAGLAHESQWLEGRTS
>Nwi_0858 TENA/THI-4 protein
MDVFDRLKAATPADWRSYIDHDFVRQMGAGTLPQTAFRTYLVQDYLFLIQ
FARVYALATYKSRTLADMKAAQAGLAAIFDEMDLHVRLCDRWGLSPEDIE
AAPEHQATIAYTRFVLDCGAAGDLLDLHVALAPCVIGYAEIGRNLAPNGI
DALGDHPYREWIAEYAGDAYQAVAANARHHLDDLAARAMTERRFDELATL
FGKASRLEADFWQMGLDANR
>Nwi_3083 transcriptional regulator AbrB
MASAEKLTTTVSTKGQVILPSAIRQRREWNAGTRLTVEETPDGVLLKPAP
AFAETRPGDVFGVLPSKGGSKTIAEMDAGILAEAKRRHARD
>Nwi_0841 conserved hypothetical protein
MYFRGFYCWNRGFYCWNSEVGSKMLGIASFYLRAVCMNRNLWGCENFEEI
TIRHSKFAAQRFAHEAAPALTSFAHSSPAPFVAGIKAARERIVARIDDDR
ETFLRKRGFSKAETAKIIETVLQEEGRPPESIFDFVQGMTAHARTKTHQD
TRLELEGKAKTLLEKAA
>Nwi_3079 Fec I like protein
MSAALNAIFQSHRRSLLWTVMRIVRDPQTAEDLAQETYLKVRKALETRPI
EHVESFLFQTARNLAIDHQRRKAVRNRYEASDAAREDIENVAAAEPSIED
DLIQQQRWRAFEDALAELPVRARTVWSMIHLQGRTCAEIAEHLGVSRNTV
YNDIKLVMGHCQDVLARLED
>Nwi_2777 transcription activator, effector binding
MNRLRFFFPLGIAAISGVMLLGLSALLAETPPATPPGATAPAAEAPPAAP
APPGTTAPATPTPPPAEVQTPENPTAEAPKPPATAPVQTADPFGEEHTLT
PKTVLSLRNTATWDTAFETLIDSFKSLAALLDKRGVKPAGNMMIVYTSTD
DNGFSFLAEIPVDQEIKDLPKNMSMGKSPEGKALKFVHRGSYDNMDNTYE
AITNTLDDRKLEAKDTFIEEYTTDPLKTEEDSLVIDVYVPLK
>Nwi_0980 Transcriptional regulatory protein, LysR family
MAKLPDFEALAIFAKVVELRSFAGAAADLGLSKATVSKAVSRLEDRLGAR
LFNRTSRRLALTDAGKNLSERAARLLADGEAAENEALARSTVPRGLVRLA
VPMTFGVNVIAPLLPGFLAMYPEVSVDLHFSDAMVDLIGEGFDVGVRIAS
LPDSSLLARRLCPMPRHTVASPAYLKAHGRPTHPMHLAQHSCLGYAYLST
PGVWRYVNARGEQAAVRPSGRLRVNNGEALLPAIIAGLGIADLPEFIIGD
AIAAKQVEVLLKGWKQVEGAVHLVMPPGGPRPARIEVLIDYLAHQLAHQG
RRGG
>Nwi_1709 transcriptional regulator, XRE family
MPRPRAHSLRLNVHHRRSLESEVSMQRLRLKADGRIVEIRDGKEFPLSPS
MHVAGAASDDAGPSSVPEVRSLRRRARLTQVEFAARLGVPVETIRNWEQG
KRIPRGPARALLAVVAHAPETVFAALDGRE
>Nwi_2653 Protein of unknown function UPF0074
MRLTSFFDYTLRLLMYAATHGDRLITIEETASVYGISRTHLMKVANQLTR
AGYLKAVRGRSGGLMLAKRPNRIKLGDVLCATEPDFALVECFSSNNRCPI
TSSCRLRAPLREALNAFTTTLDRYTLADLILSPKDFGVPPAA
>Nwi_0029 regulatory protein, LysR
MVTLRQLRYLAALARHGHFGRAAEACAITQPALSMQIRELEQFLGVTLVE
RRPGEVMLTEIGREISRRAEDVLASVRDLVDFARHRGRPLTGRLTLGIIP
SLAPYLLPRILPALQSQFPDLELELRETQTRLLVEEVKGGALDAAMLALP
LGEPDIDTLELFNDLFLLAVPASDPRPCGRRVAARDIDQSRLILLEDGHC
LRDQALAFCATIPRGPSSGATGMTFGASSLATVMQMVAGGYGLTLIPQIA
ADVEARDERVKILRLQDPQPGRCIGLAFRRTSPRRADFAALGEVVKGCVA
ANGP
>Nwi_3052 Transcriptional regulatory protein, TetR family
MAKIERNEIITRAAELFRIGGYDDTSMAQIADACGIRKASLYHHFPEKDG
LVLAAIEHIHEHFRKHIFAIAYRNNADARQRLHALCEATFSYFNGRDGGC
LLGNFALALTERAPRFQEPLRSYFDDWTKAIAHLLTAEHGESRARDLAFD
SVAHIQGAIMMMRLYHQPQHLRRALETSIRMLP
>Nwi_0177 sigma-54, DNA-binding
MALTQKLEFRQSQSLVMTPQLMQAIKLLQLSNLDLSAYVEEELERNPLLE
RASDGSGPPAAEAASDVEYSEGDEAAFEDHGGGERTGAQDPASTPEEWMN
RDLGSRAEIEQTFDSGLENVFPEEPAEAAARTAQDAAPSAFTEWGGGASS
DDSYNLEAFVAAEITLSEHLAEQLAVALTSPAQRMIGRYLIDLVDEAGYL
PADLGEAGDRLGAGESDVAAAVAVLQTFDPPGICARSLSECLAIQLREKN
RYDPAMQALVEHLELLARRDFAALRRICGVDDEDLAEMIGEIRHLDPKPG
LRFGAARTQSVVPDVYVRPGPDGGWLVELNSETLPRVLVNHTYYAELSKT
IRKDGDKTYFTDCLQNATWLVRALDQRARTILKVATEIVRQQDGFFAHGI
AHLRPLNLRTVADAIQMHESTVSRVTANKYMATNRGIFELKYFFTASIAA
ADGGSAHSAEAVRHHIKRLIDAESPSAILSDDTIVERLREAGIDIARRTV
AKYREALRIPSSVQRRREKQNLPGGARAETRKPPNRPRDAAPA
>Nwi_0511 phosphate regulon transcriptional regulatory protein phoB
MGARILVVEDEEALTTLLRYNLEAEGYEVETVVRGDEADTRLKERVPDLV
VLDWMLPGLSGIELCRRLRARSDTRQLPIIMLTARGEESERVRGLATGAD
DYVVKPFSVPELLARVKSLLRRASPARLASVLSFGDIELDRDRHRVVRSG
RPIDLGPTEYRLLEFFLEHPGRVFSREQLLDSVWGRDVYIDERTVDVHIG
RLRKLLNPDGELDPIRTVRGAGYALDEQFASRTE
>Nwi_2430 RpoD family protein
MARTATLPVLNGENGLSRYLSEIRKFPMLEPHEEYMFAKRLREHDDRDAA
HHLVTSHLRLVAKIAMGYRGYGLPISEVVSEGNVGLMQAVKRFEPEKGFR
LATYAMWWIKASIQEYILRSWSLVKMGTTANQKKLFFNLRKAKSKISALD
EGDMRPDQVKLIAKRLGVTEQDVVDMNRRLGGDASLNAPIRDDGEAGEWQ
DWLVDQSPNQEAIMAEHEEFDHRRRALTGAMGVLNPRERRIFEARRLADE
PMTLEDLAAEFNVSRERVRQIEVRAFEKVQSAVKTTIAQQEQAAMEAAR
>Nwi_2123 conserved hypothetical protein
MAKAARKIVFSRSRDIPFNKLVLSESNVRRTRPEAELDELVHDIDRREDL
VQGLNVRAILDADGNETGMFEVPAGGRRYRAIERLVKAKRFPKDGLVPCI
VRKSDTRILAEDDSLAENLLRAGLHPLDQFRAFQDMLDNGMTEEEIAAAY
LTTVQVVKQRLRLNAVSPVLRDAYAEERMTLDMLMAFTVNPDHQSQEQVW
EAVQHSYNRQPWHIRQLLTETTIPASDKRARFVGIDAYVAAGGAVLRDLF
EDDDGGWLADPALLHRLVSEKLKAVADEIAAEGWKWIKIDLDLPYGYDHG
LRQIGGTFVDLTEKERAEREALRAEYDRLEAEYDGADELPDEIDQRLGEI
EEALEAFEKRPVVYDPADIARAGVFVSVDRDGDIVVDRGYVRPEDEAPVA
VNGSGAEVVREPDAVDAPATPSAQRAVITIRGQGTDADDDEEDDAIKPLP
ERLVIELTAHRTLALRDAVANHPQVALTALLHKLVLDAFKRNAHGCAVEA
SVREVHFPVQATDLKDSASAKAIQARMDAWKADMPLEDDDRLWNWIAGLD
DASRLALLAHCVSYGINALYERPNPHSGYGVTQHGLDRRMRDADRLARAT
SLDMVEAGWRPTVANYLGRVTKSRIIEAVREALGEEKAQLIDHLKKPEMA
KEAERLLADTGWLPEPLRSADPDATTSVDVSGGEGDETLPAFLADDEDEQ
ADDGEGDADDRAMIAAE
>Nwi_0438 conserved hypothetical protein
MAEDVLTTSGIGKHGVLRLPSVDIDNYNIELKDDDGFLGDRACKGAFRRI
LDDLRAPLKKNGEDPLGKTPSEAIAKGSLDEALVGEDIEASALVHGAIEE
FAQELAYVTGRFLKTKAWADTECIVVGGGFRKSRVGEIAIARADLLLKNE
GHKVHLVPIRFDPDEAGLIGCLHLAPSWIFEAFDSILAVDIGGTNIRCGV
VETKWKKASDLSRAGVWRSELWRHADDEPTREGAVKKLVKMLKDLVSQTE
KQGLKLAPFIGISCPGVIEEDGSIKKGAQNLPGNWESSRFNLPKSLIEAI
PEIGGHDTTVLMHNDGVAQGLSEMPYMQDVSRWGVLTIGTGLGNARFTNR
RKENKKEKKPEDGKDKDKKDRKAKD
>Nwi_0022 transcription termination factor NusA
MAAVSANKLELLQIADAVAREKTIDRGIVIAAMEDAIAKAARARYGSETD
VHAEIHPKTGQLQLTRHMLVVEQVENAANQISLKDAQRANPGAQIGDTIA
DTLPPLEYGRISAQSAKQVIVQKVREAERDRQYQEFKDRIGDIVNGIVKR
VEYGSVIVDLGRGEAVIRRDEMLPREVFRNGDRVRAYIFDVRRETRGPQI
FLSRTHPQFMVKLFTQEVPEIYDGIVEIKAVARDPGSRAKIGVVSRDSSV
DPVGACVGMRGSRVQAVVNELQGEKIDIIPWSPDIATFVVNALAPAEVAK
VVIDEDRERIEVVVPDTNNQLSLAIGRRGQNVRLASQLTGWDIDILTEQE
ESERRQADFENATRMFMETLNVDEVVGQLLASEGFTSVEELTLVDTREIA
GIEGFDDETATELQNRAREYLEQLEAELENRRKELGVDDALKTVPGVTSK
MLVKLGENEVRTIEDLAGCATDDLVGWTERKEGEAVKHAGYFDGIEISRE
DAEAIIMQARLSVGWINEADLAKPAEAEDIAAEDQPAE
>Nwi_0836 GCN5-related N-acetyltransferase
MARLTPPRQLEETDDCAGFDCGRESMNQWFRRHAWRNQQIDVSRSTVIRD
AETGMIAGYVTLSVGHIEREYLPKSSQRNRPENIPIFLLGQLAVDTRFQG
MGVGRSLMFYALKTAVGMAKEIGCYGVLTHPLDDDVRRFYQNFGFEQLPH
DPRRSMIVRIKDLVRNGFDAD
>Nwi_2518 Two-component transcriptional regulator, winged helix family
MTVMQMQTQMAGIARARVKLADDAPHLLLVDDDRRIRDLLSRFLTGEGYR
VTTAMSAKAARSKLLGLYFDLLILDVMMPGETGFDLARSVRASSPVPIIM
LTALHEAENRIEGLQIGADDYLAKPFEPRELVLRIGNILKRTMPMPTSQS
ESIAFGPYVYHLERGELRQGDDVIHLTDREREMLRVLAATPGETVRRGDL
NGGGTVNERAVDVQINRLRRKIERDPANPLFLQAVRGVGYRLVAAP
>Nwi_2285 Transcriptional regulatory protein, TetR family
MSSLRMTGDLRRELILSAAKQCFARNGFAGTTTRSVAAAASISEALLFKH
FPTKAALYAEILAEACEADPALHRLLDREPSTETLVILVRGMVRHFLNVS
ASPDQQEAQRLRLMVSSQLDDGEFARLLYEKIRNLIGGAFTASLEQAIAK
GDAEPVGRDPLNLFWFAHHTVLMLVLSRLPSVPALSYGGGPDLERQISEF
ILRGIGLNAAAIALHLDREPVFNAAQTSAAESA
>Nwi_2583 Transcriptional regulatory protein, TetR family
MVYRRTQQVMKRLAARRRAILTAARDIAGNAGMAAVQIAPVALRAEVAAG
TVYRYFPSKADLISELIAEVVRDELTAIRGAADAAPGPSSALAAAIATVA
VHMVSHRKLAWGILAEPVDVDVAASRLASRRDIVGEIETRIKAAVSAGHL
PQQDTSLAATALLGALHEALVGPLAPDFEDQASLRDVVKAATLLALRAVG
VTDARARGLVVQAALPATTPAGNKTD
>Nwi_1841 peptidase S24, LexA repressor
MLTRKQYELLRFINERLKESGVPPSFDEMKDALDLRSKSGIHRLITALEE
RGFIRRLPNRARAIEVIKLPELAASGGGRRGFTPSVIEGNLGKVRRGGGG
GADEAERPVAVPVMGRIAAGTPIEALQTCSHTISLPPDMLGAGEHYALEV
RGDSMVDAGILDGDMALIQRNPTADTGDIVVALIDDEEATLKRFRRRGAS
IALEPANAAYEVRILPPNRVQIQGRLVGIYRKY
>Nwi_0843 transcriptional regulator, XRE family
MDLKEVMAINMRRLRYDKKLTQEELAERSGLSMRYVGSIERGAVSASVSV
LGKVAVALDVDPCDLIRPPKR
>Nwi_2303 Fec I like protein
MSSTTELLNIFKAEQGQLQRLVRRLTGNPHTAEDVVHDTFIKLMHRDVGK
CDVGLVVTTARNLARDAMRAERVRTSYAESVSREQVHGGVVGPEDAVSSR
MDLDALLRALETLPRRTQRIFLLSKVDGMTYPQIARSLGISVSTVEKEMI
SALEFCRNWRRRRENV
>Nwi_3117 hypothetical protein
MRGVERMSIQAVAWALEQHINDPRSKLVLISLANHADHVTGRCWPSMATI
GREASCRRETVLRHVKALEESGFIKVIRAAGGLRKRVHTYELCMSRCATD
AHQTGAQSEALMCADRTSNCATHRTSMNHHRTITSPLPSSPPPPVENLSR
SGNGKEATQRSAMHPASRSSVRSDGPEVIQNRIAAARSGLRPGERSP
>Nwi_0830 transcriptional regulator, XRE family
MRTDQCLFACSGRMANRTVTPTEIGVIVRTTRKSQKLRQDQLAGAAGVGV
RFIVDLEAGKPTAQIGKALLILAALGCKVTIDPPPSRS
>Nwi_3058 phage head-tail adaptor, putative
MADQDDVLDLIDDSGADRPDASTVRKWKVAVIDDDRAVHEGTRFALSDYS
LNGQTLDILSAYSAAEGRELMRAHPDIAAVLLDVIMETDEAGLDLVEFIR
NDLRNETVRVILRTGQPGQAPERRVIVDYDINDYKAKTELTADKLFTSLT
AALRSYQQLERMVQTRRGLEIIIDAASTLYDFKSMQRLAEGVLTQLASLL
NVDCAGILVLRDGGADDDDFSVLAGSGCYRRFSGAEGQASLDCDLKQTVE
DAFRRRRHEFVDHRSILYIRTGSGREVVILLQAECDLSDTDRSLVEIFGS
RLSIAFDNVILYQQLQDANAQLEDRVAQRTRALMQANRRLSAQWLRLQRA
NGFKNEILGTVAHDLKNPLGVILGRAEMLAELIGAGSSGDTVTVQINHIR
DATKRLIAMVDDLISDAMADAFDITIRREPVDVAALVAEVAEANQPPALN
KQQTITVSAPAGHVTMCDQDRMREAIDNLVSNAIKYSPVGGRITLLVDHD
AGNTIIRITDEGAGLSPEDLGRLFGRFQRLSAKPTAGESSTGLGLSIVKR
IVDMHDGEIKADSGGPGQGSAFTIILPAAT
>Nwi_2248 Fec I like protein
MSATQAASDEALIARIAQGDRLAMQVLYGRHHVKVFRFGLRLVRNEQIAE
DLISEVFLDVWRQAGKFEGRSAVSTWLLAIMRFKALSALRRRKDAELDDE
TANEIEDQSDDPEVTVQKKDTGNALRKCLMQLSAEHREIVDLVYYHEKSV
EEVAEIVGIPENTVKTRLFYARKKLAGLLQEAGIERGWP
>Nwi_3089 hypothetical protein
MVDGGMSTEEVASTYFTSQRYVDQRLALAKVSPRLHEVYAQDGMTLAMLE
AFTAHPDHARQEQVWDAVERSHYREPWRIRNMLTETTVAASDKRALFVGI
EAYMAAGGQMLPRYLFDDDEDGWLKDVSLLDRLVAEKLKVVADEVAAEGW
KWITVDLELPYGHDHGLRAITGAFAELTRKEQRQREKLREEQERLETEYA
DYDELPDDIDQRLGEIEKQLDAFERRPAVYDPAEIAIAGVFITVDEDGAL
ARVTGLDMADAGFRPTVANYLGRITKPRILQAVHEALGEEKVRLIDHLKK
DDMAREAERLLADTGWLPEPLRLVAEAPAAETSAGQNGDDVALPEFFADD
DDGAADEATGDPTPLIAAE
>Nwi_0757 hypothetical protein
MRYRTSQGLLIEAETSFDAIRRLRESSWNEQNLSDREYMEAVADRMFQEG
VHVSTVSPDIFIAGLLRAGLLTREPDDAQPNAENPTKQEVDRK
>Nwi_3111 transcriptional regulator, XRE family
MKATLIVIQNQADHEAAKALVGKLIQSSDAADRARMVAQSRLIEAYERTR
WPRKAPPLPDLLSYLVEQHGLTRADLVPLLGTASRVSEVMSGKRELSMTM
VKRLRERFHIPADLLISASESVAA
>Nwi_2452 Transcriptional regulatory proteins, AsnC/Lrp family
MQWAGCRDLDGVTKSLDQIDLKILSEIQADGRITNVELAKRVGISPPPCL
RRVRTLEEEGYIQGYRGLLDPQRLGFEVTVFASVHLSSQADADLRAFEEF
VRGEPLVRECWMLSGEVDFILKCVAPDMATFQDFVAHLTAAPHVRNVRTS
LVLHSSKYAPAVPLELKMPG
>Nwi_3133 Transcriptional regulatory protein, MerR family
MTGDFLAIGELGRRTDTKIETIRYYERIGLLAAPGRTAGNYRAYGPEHLN
RLSFIRRSRNLGFSLDQVRALLDLADQHDRSCDAVDAIAKEHRAEVDRKI
ADLRTLRRELDSMIDQCRCGTVADCRIIEALSPTTIVAP
>Nwi_0252 Transcriptional regulatory protein, LysR family
MDLRHLRYIVAAARNGSFSAAANEFNARQPIVSKRIKEVEDELGVRLFER
STAGARLTLLGEDFVVDARRVLDETEHMARHAKASRAGTLGHVVVGFYKS
LSAGAFRAAVSCFRKQNPDIDIELVELPFADIAAGVISGALDAAIVLGDA
GKCAMFKTIGLWSEHLVIALPKDHPLADKPIVYWPDLRGERFLVTVRDPG
PDTRSTRRRNAGLPGR
>Nwi_0314 DEAD/DEAH box helicase
MERSNLLSSFQDFGLADPISRALAEENYLTPTPIQAQTIPIALTGRDLVG
IAQTGTGKTAAFALPILHRLLQNRIKPQPKSCRVLVLSPTRELSGQILEN
FNAYGRHLRLTSALAIGGVPMGRQVRAVMHGVEVMVATPGRLLDLVQSNG
LKLGQVEFLVLDEADRMLDMGFIHDIRKVVAKLPAKRQTLFFSATMPKDI
AELANQMLRDPARVAVTPVSSTVDRITQRIIQVDHAGKAAFLAQLLKQEP
VNRALIFTRTKHGADKVVKSLAKSGIRSNAIHGNKSQNHRERVLAEFRAG
EIRTLVATDIAARGIDVDGISHVVNFDLPNVPETYVHRIGRTARAGTDGA
AISLVAGAEEMAYLRDIEKLIRVVLPREDRRTSGQREAAPAPQQNRGGSP
APHGHAARAGDASSGKGSRRRRSKKGTPQTSRRPESGRQETSRSAPGSKP
GGMQGVAFLHRKSRPARLKSSQPPQR
>Nwi_2745 GCN5-related N-acetyltransferase
MTVSFQLRPYRASDEDAAIALWQATWQQAYPAIDFAARVSWWRERWRNEL
VPNAAIVVADQSGELAGFVTIDTAGYLDQLVVAPAHWGGDIANALMLEAK
RLSPWGITLLVNADNGRAIRFYARNGFAHAGEDVNPISGRPVNRMEWKP
>Nwi_2141 prophage CP4-57 regulatory
MTNRNGAPIKRTIRRHQLREMVPLADSTIYEMEQRGEFPRRFALSPRCVV
WDLAEVEAWLAARRASPVRRAQHPDVRQRRARPVRERDQARGEASKAG
>Nwi_2913 two component transcriptional regulatory protein, winged-helix family
MRVLIVEDSEELADLLAKGLRAAGYQIDLLTNLADAASALGTTRYAALIL
DLGLPDGDGLSILRELRHRKDPLPILVLTARGGVEDRVSGLRSGADDYLV
KPFSFDELVARLEALLRRPGQLLGSSLRLANVTFDSEGRQAFVDMKPQNL
TAREIAVLELLLRRKGNVVSKKLLEDQIFGLTGDVASNAVEVYVHRLRKQ
LLDIGAKVKISTIRGVGYVMMESD
>Nwi_0816 ParB-like nuclease
MLAIESRPIARLIPYVRNARTHSGDQIAQIAGSIAEFGFVNPVLIGADDV
IIAGHGRVLAAEKLGLAEVPVIVLSHLSESQRRALVIADNRIAENAAWDD
AMLKAEIAALHEDAFDLDLLGFAEEELGRLLDGLDADAGGDGAADGEPSS
DASTETQRATLAERFGIPPFSVLDARKGWWQDRKRAWIDLGIRSELGRGE
GATYGVADGVTEPGLNHYRNRNNAAPGGSPRPLDRGWTGKKDKPAHG
>Nwi_0485 GCN5-related N-acetyltransferase
MDLEDRAPTCFDRHMSTTLIELRPAKVADASAVAATHDESWRSAYQGIIP
GAELEKLINRRGPQWWDSAIRKGSRISVLVFGEQVAGYANYGRNRARSLQ
YDGEVYELYLRPEFQGLGFGRRLFAAARRDLVQSGLKSVVTWALSDNEPA
MEFYCALGGRMIARSSERFGAKSLDKVAFAWTS
>Nwi_2166 Protein of unknown function DUF1491
MRQLHWSRRHEARIFMSMRLKSSIWVAAYLRRCQCEGVFGAVRRRGADEA
GAVFVKLALLDGNAMLYAPAPQAVYDDSRPVERVFAPSSVEPVAEQAVEE
RLAKEVRFDPDAWIVEIEDKAGRHFLDLARG
>Nwi_1345 transcription antitermination protein NusG
MSMRWYIVHAYSNFEKKVSESIREQAKQRGLEDLFEQVLVPTEKVTEVRR
GRKVDTERKFFPGYVLVKMNLTDEAFHLIKNTPKVTGFLGAENKPMPISE
AEAMRIMHQVQEGVERPKASVSFEVGENVRVADGPFASFSGVVEEVDEAR
SRVKVAVSIFGRATPVELEFGQVEKV
>Nwi_1515 DEAD/DEAH box helicase
MRPALLNPLFVPVTSLSGVGPKQDRLFRHLLARDETPRLVDLLFHLPASV
VDRRARPKIRDAVPGTIVTLEVSVDRHRPAPPGRSRAPHLVYASDETGSV
VLTYFRAQPSYVEKLLPAGSKRYVSGTVQMFDGTLQIVHPDRVVDEAGLA
ELSGIDPVYPLTQGLAPGALRRAIAQALQNLPVLPEWTDPKILRRCGFPP
LAQALRRVHVPLELTDTLPEGPFWSRLAFDELLAGQLALTLVRARLRRPA
GNRHAGDGHLRNRIIDALPYALTASQQQAVAAIIEDLRQPVRMLRLLQGD
VGSGKTVVALLAACAVAESGKQTALMAPTEVLARQHIKTIAPLAERAGLR
VAILTGREKGRERREITARLAEGDIDLLVGTHALIQDEVTFKSLALAVVD
EQHRFGVRERLALTTKGEAVDVLVLSATPIPRTLVLTYFGDMDVSELRDK
PAGRQPIDTRAVSDGRLTEVIDAVGRAVKAGKLAYWICPLVEESDAVDLS
DAEQRYQSLKARFGDRVGLVHGKMRGPEKDRVMAQFAAGEINLLVATTVV
EVGVDVPAATIMVIENAERFGLAQLHQLRGRIGRGSEPSTCLLLYREPLG
EMSAARLRVIRETTDGFRIAEEDLRLRGEGDVLGTRQSGLPGYRVARSDV
HAQLITLARDEALRILKQNPNLTGSHGEALRCLLYLFERDEALPLLGAG
>Nwi_0254 helix-turn-helix, Fis-type
MSIQTIPLQSILPPQGNPRSAFDPATIEGLAASIRQDGLLQNLVVRPSRG
RQFRIVSGERRYRALKLLQERGDIAEDFGVTVEIRSKLSKDDALRLATVE
NVQRENLPPLDEAAAFAALIRKGASLDDLAAKTGLSHTTIRRRLALNDLC
REAKEALAAGTITLAQAEALTLGDADAQRSVLGDLESGYVPYSAADIRDH
LLDERPSVAMAIFPVEQYTGTITTDLFADDEESYFDDADQFLELQRQAVE
KLATEYAGKAAWVEVTEAHRIPAWQYEEAEDGEQGGVLINLAPSGRVEIR
EGLVSPACPPSGLLRQFRSFREGRISGSSQPIWSADETEIRTRQSAGRTG
AEGHPTADAPALFGGGEDPYRAGRTARRGEHLRALPPRRHRRLDVLRLVQ
GVPGSRQAPVGGRHGTCRNLWRGERSSSGSLGVEGSRRRSHPGEPSAKKK
HERGWGERGMRYPASEKAEIIALVEQSHLPAKRTLDKLGIPRATFYRWYD
RYRAGGIEALADHRSRPDRVWNRIPDDVRGQIIDLALELPELSPRELAVR
FTDERKYFVSEASVYRLLKAHDLITSPAYVVIKAANEFKDKTTAANQLWQ
TDFTYLKITGWGWYYLSTVLDDFSRYIVAWRLGPTMCASDVTATLDQALA
ASGLDHVSVRQRPRLLSDNGSSYVADDLATWLRAKDMQHVRGAPYHPQTQ
GKIERWHQTLKNRILLENYYLPDDLKRQVAAFVEHYNHDRYHESIGNVTP
ADVYFGRAETILAERHRIKRDTIANRRLQHQLQAA
>Nwi_0662 transcriptional regulator, XRE family
MRSEIRRSLWSVIGQPIPIRFSVHVADGACRHCVPDMGIKARIHGVRPDH
RMSKLGTSQIYHQGDGSGLDCIELPVIVGKNLRRIRLRQGLSLERLAKQS
GVSRAMLGQIETGKSTPTIGLLWKICTSLTVPFASLIAVGDPEGIIVLRR
DGSKLLSSNQGRFTSRALFPFDSERRTEFYELRLAPLYCENAEAHAAGTR
ENLVVAKGSVEIAVGSARPTTLSEGDAMLFEADVPHAYRNLGTDEAVLYL
VMTYAQMIG
>Nwi_1713 3'-5' exoribonuclease, VacB and RNase II/Ribonuclease R
MSKPRARNFPDREAIVAFIRAHPGRAGTREIAHEFGLKNADRAELKHILR
ALADDGTIVKRSRKLRKPETLPPTLVADITGRDRDGELIATPTEWDDEAT
PAPRILIHVPRRAKPGTVAGVGDRALLRIETIESDETASYRARVIRVIDR
TRARMLGIYRASPQGGGRLVPVDKKQAGRELNIAKADSAGAEDGDLVSVE
LVRTRGFGLASGKVKERLGSLATEKAVSLIAIHAHDIPQEFTPAALREAA
AAKPSALQGREDWRAVPLITIDPPDAKDHDDAVHAAPDDDPNNTGGAIVT
VAIADVAYYVRPESALDREALERGNSVYFPDRVVPMLPERISNDLCSLVP
GEARGALAVRMVIDADGRKRSHTFHRILMRSAAKLAYSQVQAAIDGNPDD
ATAPLLEPILKPLYAAFALVKRARDERDPLDLELPERKILLKKDGTVDRV
IVPDRLDAHRLIEEFMILANVAAAEMLEKKGLPLIYRVHDEPTVEKVHNL
REFLKTLDMSFARSGALRPELFNRVLDQVRGHDSESLVNEVVLRSQAQAE
YSAENYGHFGLNLRRYAHFTSPIRRYADLVVHRALLRALGLGDGALPDSD
NAETLAEIAARISVTERRAMKAERETADRLIAHFLADRIGNIFEARISGV
TRAGLFVKLADTGADGLIPIRSLGTEYFKYDETRHALVGSRSGSMHKLGD
VVEVRLVEAVPLAGALRFELLSGAEVRPRSPRARGGGKIKTPRGRNAGHP
DVHSKAHPGRKPRGTSRKPGRSKAGKPKKGKS
>Nwi_1350 DNA-directed RNA polymerase, beta subunit
MVQQTFTGRKRVRKFFGHIREVAEMPNLIEVQKASYDQFLMVDEPEGGRL
DEGLQAVFKSVFPINDFSGASQLEFVRYEFEAPKYDVDECRQRGMTYAAP
LKVTLRLIVFDIDEETGAKSVKDIKEQDVYMGDIPLMTMNGTFVVNGTER
VIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPYRGSWLDIEFDAKDI
VFARIDRRRKIPVTSLMFALGLDGEEILSTFYKKIIYKRAKSGGGSDGWR
VPYDPVRFRGYSTLNDLIDADTGKVVLEAGKKLTVRAARQLQEKGLKALR
MSDEELVGMYLAEDLVNPKTGEIYAEAGEEITEKSLKALNEEGYKELPLL
DIDHVNVGPYIRNTLAADKNMTREDALFDIYRVMRPGEPPTLESAQNMFQ
SLFFDAERYDLSAVGRVKMNMRLDLDAPDTYRTLRKEDILAVIKTLVDLR
DGKGEIDDIDHLGNRRVRSVGELMENQYRVGLLRMERAIKERMSSVDIDT
VMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPG
GLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGF
VETPYRKVKDGRVTDEVVYLSAMEEGRYHVAQANLPLDARGRFTEDLVVC
RHAGEVLPVTPDKVDFMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQ
RQAVPLVRAEAPFVGTGMEGVVARDSGAAIAARRSGVIDQIDATRVVIRA
TEDLDPTKSGVDIYRLMKYQRSNQSTCINQRPLVKVGDIVRKGDIIADGP
STDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDVFTSIHIEEFE
VMARDTKLGPEEITRDIPNVSEEALKSLDEAGIVYIGAEVRAGDILVGKI
TPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRH
GVDKDERALAIEREEIERLAKDRDDEQAILDRNVYGRLADLLENRQGIAG
PKGFKKDTKITRAVLDEYPKSQWWLFASPNDKLMAEIEAMRKQYDESKKG
LEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRKIQPGDKMAGRHGNKG
VVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGWACAGL
GRRIGQAVDAYLASAKQETKPLKETLKKVYGDNETIKSLEDHELVELGRN
LRRGVPIATPVFDGAKEADIEQMLELAGMDKSGQSTVYDGRTGDPFDRKV
TVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVRGDDTFEAGIPESFNV
LVKEMRSLGLNVDLHNSKIGDMMPTSEAAE
>Nwi_1966 RNA polymerase ECF-type sigma factor, possible FecI
MPPRCREVLILHKFESLSYAQIADRLGIAKNSVAAHMVKAISHLRSRFRE
ASA
>Nwi_1388 DNA-directed RNA polymerase, alpha subunit
MTIQKNWQELIRPNKLQVVPGSDPSRFATLIAEPLERGFGQTLGNALRRI
LLSSLQGAAVQSVHIDGVLHEFSSIAGVREDVTDIVLNIKDIAIRMQGEG
PKRMVVKKQGPGTVTAGDIQTVGDVVVLNPDLQICTLDDGAEIRMEFTVA
SGKGYVAAERNRPEDAPIGLIPVDSLYSPVRKVSYKVENTREGQILDYDK
LTMTIETNGGVTPEDAVAFAARILQDQLNVFVNFEEPRKEVTTEIIPDLA
FNPAFLKKVDELELSVRSANCLKNDNIVYIGDLVQKSEAEMLRTPNFGRK
SLNEIKEVLAQMGLHLGMEVPGWPPENIDELAKRFEDHY
>Nwi_1756 Signal transduction histidine kinase
MNVKPTLLYVDDDKALARLVERGLTRHGFCVEYASDGEAGLARIAQGGID
VIALDQYMPGLDGLETLGRIQAIPNAPPVVFVTASQNSKIAVTALKAGAA
DYLVKDTLGEFVPLLHVAAEVAIRQALVQKARDEAEAEVRASRDRYAALA
AEREMLLREVNHRIGNSLQIIASLLHLQANSSPEEDIKAALTNAMGRVAA
VAQVHRRLYTSHDLKSVLLNQYLEALLEDLRRSTEGNRMSRLDLKAQPVE
IDPDRAVAIGIIVNELVMNAVKYAYPDGPGPIHVELASDGDDIVLSITDD
GVGLNARSDPRSTGMGQRIVSAMAQKLDAQAERDPTHAGTRIVLRFRSGT
PQVAKPMSATAA
>Nwi_3056 Fec I like protein
MQNVIAISAAACQGIVAAQTTTDEMLLKRIAHGDCSAMHTLYLRHNVRVY
RFVLRSLRDATAAEDIVSQVFLDVWRTADQFEGRSRVSTWLLSIARFKTL
TAMRQRRHEDIDQENVREIADGADTPETSLDRSNVSAILRACIAKLSPAH
REIIHLVYYHEKTVEEAGEIIGIPPSTVKTRMFYARKQLATLLKGAGLET
LAA
>Nwi_0311 Cold-shock protein, DNA-binding
MGTVKWFNATKGYGFIQPDDGGNDVFVHISAVERAGLGTLREGQKISYEI
VADRRSGKSSADNLRAAG
>Nwi_2856 GCN5-related N-acetyltransferase
MGKGGDELLRVEVLGPHHDRSGFESGIEPLDRYFRTQASQDAKKNMAAPF
VLVLPDRAIGGYYTLSSTALKLAELPAQATRKLPRYPSVPATLIGRLAVD
RRHQGKGYGRFLLADALYRALRSEIAAFAVIVDAKDENARRFYERESFLP
LPDQPMKLFRPMGDIEKLFK
>Nwi_1988 Transcriptional regulatory protein, LysR family
MHLTLRQLQIFDAVLQQESFTRAADALHLTQPAVSMQMRQLEEQIGVPLF
DHVGKKIRPTDAGRELHRHTTLIGAKMRDLESAMEEFRGVHRGELDLTVA
STANYFMPKLIAAFCACHARVQVRLQVSNQTHILETLSATNQDLAIMGQP
PEDSELVARAFLDNPLMVIASPEHPLAGRRKIPLTELGCQPFITREPGSG
TRNAAERHFSRLGVEFHSVMEMSSNEAIKQAVEAGLGLGILSLHTLELEL
AIRRLVTLDVESFPIVRQWFVVHRKGKRLSAVAQSFLTFITQQARPLASP
KHPQQAPLLIP
>Nwi_0656 sigma-70 region 2
MRIVRDPQTAEDLAQETYLRAARAAESGPIEHLEAFLYQTARNLALDHLR
RQRTRGSVQLDGLPTAEIEKVPANSPTPEGVVIERERLNRFWQALSALPE
RAQTVVVLSRVEGWQNGQIASHLGVSERTVFNDLKLAMAHCRDAIRRLDE
G
>Nwi_0251 Helicase
MPVTLLADDVGLGKTISAGLVASELIARNRVAKILIVAPKLLGPQWKDEL
EAKFDIPGEVVTGSKLASAEPDEVGAVITTYHSARAHLDKIPDDRFDMLV
LDEAHKLRNLYGVDPTPQVAKVFHRTLQQRRFRYVLMLTATPIQNRLWDL
YSLVDLLTVARGHENPFGSEGMFARRFIADKRETARILKPDAREDFRKIV
YGYMSRVRRGDANLDFPERKIQLHKVAPSSEELALIKAIAKPIQKLNRLA
QISILQALTSSPHALMVQLQTMARNGTVPMELAATVQAIVTPMRTSAKLE
GLRQLVSMLQQQNPTSWRMVVFTGRRETQTTIQAFLEELGLKVGIINGSS
GQRNQDTIARFRGNPPEIRAIVSTEAGSEGVNLQIANVLINFDLPWNPMI
VEQRIGRVQRLGSQHKNVVIYNVMLAGTFEEYIVGRLMTKLQMATDAIGD
IESLLEASGVGDGEEGTGFDEKIRELVVAASMLPRRPLKKKTRISTPPLE
LWMATNMSAHKRRRSKRPNPPWNSNHSSARPLSTLAARLQT
>Nwi_2131 DEAD/DEAH box helicase
MGLFEDWRGTLTLPRLAELRVKVGRNLVRQIVFRGATTRARIFTSEFPGH
DLIKTDLKSPYDEIYLRRKGAKRRTTNLPVVTTGLNLDPAKLPGTLTLRW
DGITPLVERANTPEKLLDTWVNQFSFRLEGENGEPGLRLPQIGALHAIAA
HFAVGDTFQPATVVLPTGTGKTETMLAAQVYLRPARTLVLVSGVPLRDQI
EEKFVTLGYLPTAEAVPIELPGPRVAVISGGIRSVAEAENLIKEANLFIA
LPNSLDASHPDAIDALAAGCSHLFVDEAHHITAKTWKSVRDRFSKEKVVQ
FTATPFRRDEQRVDGKIIFNYKLGDAQRAGYYKRINLKTVEEYGDQEARD
EAVARAAVEALRHDLNDEKLDHILLARTETQARADVLAELYQRLAPEFAP
VKVYSDRPDSQNRAALAALRNRNNTGSRIAVCVDMLGEGFDFPQLKVAAL
HDTHKSLAITLQFIGRFTRKGPVNVGNATVVTNIADPQAERKLAGLYAEG
ADWDHLIRRLSEARIDDELRLQDVVEQLKQKGTLSAELSLWNLRPAISTQ
FYKTKCKEWMPLQYADVLPPGAETWYALDDKDKLLVAVVALTEEVKWGDY
QNITNSFYDLIIARWDSDESVLSIYASDYDRMRTEQMAKAITSNNVELFG
GDAIFNILNGVELPLVKNLGSRRVGAISFTTYFGTNVTEGLAHIDKSEAE
LNHIACVGYEDGDRVLWGGAKRRGKVWQLRKSGSVADWAAWTKTTWGKVT
TDVDDVTNIIKGFLRPIKLAAPHASHAISAEWGEQAQLSLSERQSVLFGT
TEKLLYEVDVGIDSVEADGTINVCFEAEDVGAVYRLEISPALPGGYAYKH
TSGPKVQFKKVTKPAEPLEVYLQRDPVIIRYADGTHSYNCYHIPTKLDAG
IYSKDQLETWDFKGISLNKESIGKAGDTATIQYRAFAQLRDEYDLIFNDD
GKAEAGDLVCLKDVDESTIKLTLVHCKGAIGARVSGSIENFYFVCGQAQK
CITKKHKGVERLAKDLKRREAQWAANGATRFLKGGQRELSYFKEKSRKSK
VEFEVVLVQPGASVDSVTVPILQLLATTELFLKKTTDANFRVVLNAASE
>Nwi_2695 Transcriptional regulatory protein, LysR family
MITKLRDVTIRQLRALASVAAGGSVTAAANKLHLTQPAVTLQLRNLQQLC
GLPLLQRTSEGMTLTPAGQELYTLFERIEAAIDSCATSLDMITGRTGGRI
SIGAVSTAKYFVPFAISAFSKLHPGMDISLTIVNRQDIRQALRGYALDLA
IMGHPPPDIELDTHLIGDHPHVVIAPTGHRLANASGLTAVDLAHEKFLSR
KPGSGTRFLMEQFFEKSNLEPQIGMEMSSNETIKQAVIAGLGIAFISAHT
VAVELREGRMITLDITGLPIIRQWFVVRKKDKVLLPPAQEMLDFLVANGK
EFLPQAPIGRVR