Show UniProt / TrEMBL protein name		View in Fasta format (DNA)		View as list

# Desulfovibrio desulfuricans G20, G20

>Dde_0188 conserved hypothetical protein
MQTSLTEFVTETRPVCPPDAEQPDEVRTVGRSVIQHGPLNDRVYLMKVDP
DEAPQLIRKVYGLAEEHGYSKLFAKVPQKAIPLFTQHGFTKEACVPGMQN
GDGDICFMSRFLRLWRQKPADSAKMRSVLQIAAAKPPLPPSALPAGYELQ
EMRPRHTREMAALYARVFPSYPFPIHEPDYLEHCMKNDVRFFGAMAGDGI
AALASAEMDTAHANAEMTDFATLPAHRGKRLARHLLAHMEKALPENGIRT
AYTIARAVSAGMNVTFARCGYRYAGTLVNNTNIAGRIESMNVWFRQLA
>Dde_0349 transcriptional regulator, LysR family
MFSLDQLEAFRAAAETGSFSAAARRLGKVQSAVSTAVSNLEIDLGVELFD
RRGHKAVLTPAGETLLREAWTVLGECDRLLERAVAIAGGEEARLSLAVDD
AVPVDWFVDVLAAFGERFPFVQLETYYGAMGDVAQMVGEGRADLGIVMPV
SGTPAAIDAVLVGHMPYVPVAAAHHPLAALPAVGRRDLMRYRHIVVASRT
GDREPDWAGHGGPVWLQESTYATLQLVLRHAGWASLPGHLVDRHVRAGRL
VVLPLDFHAVKFAAPVFVVRRPGAAQGVAGIWLRKELEGLRLEE
>Dde_2438 transcription antitermination factor NusB
MAAKGNNSSRRSSRALAFQVLYGLNFSPAKDLAQLQEAYCASPDVSDRGG
EAHPVGFAWELIEGTWTNQKALDEIITRFAQNWRVERIGKIELTILRLAV
YEMLYRADVPPKVAINEGIELSKQFGDDKSRNFINGILDAAAKALEAGTI
TCKY
>Dde_0553 putative transcriptional regulator
MRIPKTAYAVIAATLCIVLLFIVFNTAIVARLVSGVAVDYFVDAARQSLR
DTRTQMTAMLSDSTPLDDNAESEILREMLRVSGATGIVVFNTDGSGVYLD
TLTGRKARVPAPLAPQSGTAEQTENTAPAQSRPGAIAGNSTGQPAAESLS
PALARWLRAGLDTSLEVAPGLPLLEISPETDGGRLLYILAQAAGRTAFLL
YTPEALIGSVVQHFPHAEAVVSVNGIILAASGGFSQELEKARQEEKQLTL
KALTGRREGTYGITSETLVSSKATGLAVTMLAREVNLLSMLLRDTRFLVA
TAALLAALAAIIIGYTLYAGKMRKAYRPNKPLSSQQVRRLLRQGEGDHVE
FKSTLRFNLKSGKNDKSIELAVLKGITAFLNTAGGTLLVGVSDEGEVLGM
DPDGFRNDDHALRHISNLVAEHIGIRHINAISLHALTLDGKTVLAAVCRQ
ATDPAFLRHKDDEMFLVRQGPGNRQLSFSEFWHISRKFR
>Dde_0224 Protein of unknown function UPF0074
MRISASSHYASRILVMLTRHADEAPIPAAALADRSGISIKFVEKLIRPLK
QAGLVESVRGATGGHMLAMRPEQISLGDVVRAMEGGIDLTHCCDDPERCR
SKESCRTRQMWSGVSRALERTLDAITLLDLLNDPAPECTSLPEPPQKNSR
PAKAQQAESGPHTGREKLLSSRGMNTGRCCDTLLTAKGQCSCSHGCPAP
>Dde_3468 serine/threonine protein kinase
MFIGRYRVCGLLGRGGMGAVYKVLQPVTGRMAALKLLRPSDVLEELVGTE
ELARRFYEEARIMGQLEHPHVAAVLDADHDARNRPFFLMEYYCLNLGMLI
GESYRVEAPTRRLPLDRAVRYARQTLEALRRMHYAGIVHRDVKPYNIMIT
ADDDVKLIDFGLSRLRGETGHGTAGRLHKGVKVGSPYYAPPEQENDPESA
DARADIYPVGVMLYRMLTGVLPTGEEAMAEGGIPPASQFSDDLDAEWDVF
FERAMAPDPGARFACAAAMLDRLNVLERRWRARVTNTCTLAGASPLRRQC
PPVHTDVRTVPLKAGTREARGVFGLDDLWRPLCPAGETFEDQGDMTVLDS
ATDLMWQQSGSDYPLTWDEAAEYVHSLNAMRFAGYGDWRLPTVAELVTQL
AEPPMLGDYCVPPVFDTRCDVLWSADTKSHVAAWFVSASMGFVGWQDFTC
RFSVRAVRTHSGE
>Dde_2387 two component transcriptional regulator, winged helix family
MAKDRLLVVEDDGDILQLLTFTLESAGFEVFSAMDGKTGLELAMREKPDL
VVLDLMLPGMSGLDVCKDLKRMPETQETPVIMLTARGEEVDRIVGLELGA
DDYVVKPFSPRELVLRIKAVLKRGAPFTEQEERTRWRVNGLSLDTEAHRV
EIDGDEVTLTATEFKLLFELVRNRGRVRTRDQLLNTVWGYEFEGYARTVD
THVRRLRQKIGDYAGYIETIRGVGYRFRE
>Dde_3684 hypothetical protein
MNMLSSLFTSKTRVKLLIKLFLNPDVSSYLRELASEFELSPNALKEELDG
LSQAGYLNKEKKGRYIFYNANRSHPFFPEISSIVRKHMGIDGLVEIIVNH
LGTVLEVYILDDYANGVDSGLIDVLIVGDVDPEKVHTLCVNAEKHLKRRV
RTLILTETQFEDSRDVIMKRPHWKIF
>Dde_2490 putative transcriptional regulator, Fis family
MGIMVQDFLNDVPLLVEVARQKSFSKAAEALGIGVSTLSRRIKLLEKRMG
VLLFYRDTRNVELTDNGAYLLDRCGFVLEEVQKAYDSVVLNMQKPSGLVR
VCMFLDLYDGLLKKVLLDFAARWPDISLELTFQDHPVDMRTAPFDVAFVT
GNAIAPALVTRKLLTIEPFLYASPLLLERYPMPREPDDLHRMPCIVLQRF
GGRWPMHNGSRQVTVDVVPRYSFSSVEMCRDFLLAGHGVALLRKERARPD
EKAGRLVRLLPDWSGGFVHDVNLVMGSRQLPMRVRLFVDHVLAQFAP
>Dde_1560 transcriptional regulator, MarR family
MKPHTCACGAELHDLFRQVVRLNAALGIIMDSVHEQSGMTTPQKRVATQI
AESGPLTVPDIAFVLGVSRQFIQTVCNDLHLTGLLEFRDNPKHKRSRLAV
LTAAGQQAYNAAVCKENEMIQTIFSGTDGTDVRRATALLDALRRRIEETA
F
>Dde_2130 transcription termination factor Rho
MCTDSYYEFPLSCPNQIHLAYHTALLTERCSSGFYLSTAQCAALYLVLFS
PSAPLRLAMEQQENTKRKYTRKKNTVQHQPPANPDSHMYLSELKTKSMAE
LMELADQYNVENPSNLRKQELIFALLQNCASQNGAIYGEGVLEILPDGFG
FLRSPMYSYMPGPDDIYVSPSQIRRFTLRKGDIVSGQIRPPKEGERYFAL
LKVTEIGCQPPEKAKNLVLFDNLTPVYPDRQLIMENGDKNFSGRVIDLMA
PIGCGQRGLIVAPPRTGKTVLLQNLANSINANNPDVYLIVLLIDERPEEV
TDMERTVKNAEVISSTFDEPPQRHVQVCEMVLEKAKRLVERKRDVVILLD
SITRLGRAYNAVTPSSGRVLSGGLDANALQRPKRFFGAARNIEEGGSLTI
IATALIDTGSRMDEVIFEEFKGTGNLDIYLDRHLSEKRVFPAIDINRTGT
RKEDLLLSDEVLNRVWILRKILAPMNSVDSMEFLLDKMRGTKSNRDFLIG
MNK
>Dde_3044 conserved hypothetical protein
MPQTLKPDTPAGTPAAGAVAFRRQVLPQDALLVRRVVESTGFFTPEEADV
AQELVDEHLMHGAACGYHFVFATEDDDMAGYACYGPTPATEGTYDLYWIA
VAPHRQHSGLGRALLAEVVHDVRLTGGRLLFAETSGIRKYAPTRRFYERA
GFSAEAVLKAFYRAGDDKIIYRLEVA
>Dde_0500 putative transcriptional regulator
MSKKIVTRFDAADYLDSEEAMVAYLNAAMEEDDPDILLAAMADVAKAVGM
SKLAKDAGIGRESLYKALKPGAQPRYQTIHKVMNALGMTLQAKPRSAVMQ
>Dde_3472 conserved hypothetical transcriptional regulator, MarR family
MEKVTSCFIRKISRDLARELRLVGSYADQKGLTVAEAYVLIELGEHGTLS
VQQVAQLLLIDAADASRAVQSLILQKLAVLVPEGPPDRAKGVALTEAGHR
RLAEVHGEMDSLVRAGLDQLTPGEQKAVADGLMTYARGLRYSRLQEGFVI
RPVRPADNAAVAEIIRSVSQEHGLTAEAGYAVGDAAVDAVSQAYAADGAC
YWVVEHQGRVLGGGGVAPLAGCDGSICELQKMYLLAECRGRGLGRRLVLT
ALEFARSHGYRACYLETTGILQQAARLYESLGFERCTAQGDTGHSVCELR
YIMHFTTQASSARGEHPPQPCCGCGA
>Dde_2318 transcriptional regulator, XRE family with cupin sensor domain
MSSDAFSQPYREIAPRLLGLRDAVGFSAEELAQKVGVTSQVVERYESGEV
EIPVSYLTDVARACGVDLTALVSGGDAHLHDFTLVRKGEGLAVERRKDYD
YRNLASRMTGRRMEPFMVRVPPKAESDLSWNEHSGQEFIYMLEGRLEIWL
ESKRNVLAPGDSIYFESRIPHALRALDGADAVFLDVIS
>Dde_2904 hypothetical protein
MQETIRARVDSQLKEQFEFAAKSHGQNGSQLLRDFMADYVRRHKEQQIRR
EETLQAIESIEAGRHVVGDDVFAWMDTWGTDFTPVIMKGAPECK
>Dde_1614 regulatory protein GntR, HTH
MQRAAYQVAEEILKLVSNSAVRPGERLPGERALAERLGCSRNTVREALAA
LSARGLVEIRMRSGAYLCRQNHPSPDGGRTGPGEALDALVTLGPALVERV
CRVAGVSEHEHAERITARLGRALVDRSPLDAWRGLTAFYSALAEITGNSL
LCAAMGSIARSGAAGGFENLPELAPAALQQFFAEHVEMLQAMRRHDVALA
SRCAAGSLDAFGRMLWQKNGGERN
>Dde_0029 parB-like partition proteins
MAAVQRGLGRGLDALFKGYQEEAPAADTKHENPGTVSIKALMPNPDQPRK
HFSEEALQELTDSIRSQGVLQPLLVRPAKNAEGMYEIIAGERRWRACQKA
RVTDVPVIIKNLTDEETLAVALIENLQREDLNPMEEAHGMAQLKEQFGMN
QETLAARLGKSRSAVANTLRLLQLPEAAQQDLTKGALTAGHARTLLSVSD
ETARAALHRRIIDEGLTVRAAEEQAAYFKEHGELPAENSAGPAKKASALP
RTMPSPTMSSLREKLKATMPVKASITGSEEKGKVTLSFSSQEELARVLSL
LGIEL
>Dde_2116 sigma 70 family protein
MTPAKDTVKKHTAAAATDSNAAEDSAAEVLTGDDETTYDIEIDQEEDDED
IDIDEGDVIDVSDTDLPAPLPPGNKPTRDSLHLYLREISRFPMLKPDEEF
ELARRVQLHNDSDAAFRLVSSHLRLVVKIAMDFQRRWMQNVLDLIQEGNV
GLMRAVNKFDPDKGIKFSYYAAFWIKAYILKFIMDNWRLVKIGTTQAQRK
LFYNLNKERQKLIAQGYDPDAAMLSERLDVTTEQVVEMEQRLDASDMSLD
VQVGDENGSASRMDFLPALGPGIEDTLANNEIAAMVQERIRDIVPLLNDK
ELDILNSRLLSEDPVTLREIGEKYDITRERVRQIEARLLQKIRDHLFKEI
KDFSSDWITR
>Dde_1158 transcriptional regulator, putative
MKATDFSESELRMQEYVEHAISRLGGVREVAVAAGVSRRTVYAWKNGERF
PSRSNLNRLSGVLMRCAPSESPVPEFPAADGRESAAGLGVHENDGTEYGR
RAAFGATGAAAHAAHPLHDFSDMPDLRGVLDEFVFVSKADARPSAGGGSL
QTGAENVERHAFRLDWLLSKTHDTSSLRLMEVMGRSMEPTLHNGDDVLVN
EGDTYLVEDKVYVVRVQDEIYIKRFARTPGRLLFRGDNRDLAYQDIEIDP
QDVSCDWTVIGRVIWAGKEL
>Dde_0638 putative anti-sigma-28 factor, FlgM
MQIKNLLNKLDPYQAKLEKADSKNTGDARRKSGDSSSGGDRVSLSNDARL
RTEAYTGALSTPEIRHEKVAEIKDRIASGEYRIDSKDIARKLLRDETDFL
A
>Dde_1932 LexA repressor
MGKAKTDEITPLQRKTLEAICRFVDAKGFPPTVKELSEIFEISPASAHDR
INQLVRKRYLKREGGKSRGIAVARRPSEMAASLVSVPVVGMVAAGRPILA
EENITGQVLVESDVVRSGQHFALRAVGDSMIGAGINDGDLIIVRQQPIAE
DGDIVVALLNNEATVKRLKIKDELIELVPENPEVRKIRIRPEDDLRVLGK
VVGWKRS
>Dde_1732 hypothetical protein
MGLTDARKSVGLLDEDERNTVPVTDSLGREQHTFIINESGLYSLSFWMMM
KNLPVQ
>Dde_3024 acetyltransferase
MNIVAAAQEDYPEILAVWEASVRATHDFLTEDNIQFFKPLILKEYLPAVD
LYCAKDETGRIHGFLGVAEQNIEMLFLAPESRGRGLGKLLVNFAVAELGS
VRVDVNEQNPSAAGFYEHMGFTVVRRSSVDGQGQPFPLLHMELRK
>Dde_2578 putative transcriptional regulator, AsnC family
MTGPAVQDQELDQFDKKILDIIQTGFPLEPRPYAVIGDAVGLTEAEALAR
VRALKERKIIRRLGANFNSWKLGFRSTLCAAKVPEDKFDEFVAEVNSHVG
VTHNYLRAHAYNVWFTFIGPSWEEVCSTLDSITQKTGIPILNLPAEELYK
IRVDFKMDEDPAAD
>Dde_3224 hypothetical protein
MRRFGPAGCRGGRNHNTCPPPEGRTLYRARDGKIMGVCKGLAEYFEVEPV
WIRLFTILGALATGIWPALGIYILAGLLMKPKPVMPVRDIHEGEFYSSYV
SSRKAALARLKEQFARLDRRIRRMEDAVTSRDFDWQRRFDDRR
>Dde_3291 transcriptional regulator, MerR family
MKQQTKYSIGDVSQICNISKKALRYYDKIGLITSQRQDYNNYRYYTHESL
LAVPVIKYYKQMGFKLDEMREFIEGSTANVYRAIRNSFLSKIQELEKEQE
EIRRKHMSVKDWYDLILEAEMVIDNNIQEVSIKYIEPSRYLFLNQTYDTN
IKAAIINIDFTNYVESLNNEITGPVILNFSSHAARMKDKEQPVRILQKTL
MPCHDEYTTDMGGHMMAACYHIGPHEDIAETYKKIRRWARQHGYTLGDES
YERYVTDYWTTRNSAKFVTEIMIKASRQTVVVPEQEDEL
>Dde_1564 DEAD/DEAH box helicase-like
MDRKEETTVKTMLQEFVTDTIPEYIIDGSHNILNSGGVLKLSLKKGEGYW
DVEAHIQGDDFQNYSPKLSLSIGEETVNYMCNCPDSFSGVCRHVGAAALK
LLASLETSDDAEPVAPKTEWRQSFRNFFSTELEPEAGKHYLIFRFHPEPG
RLQVSLFRARQNKSGLSTVHNEITLEQIIRNPDWCELSPDLPAVAHQIGQ
YLDYHGHRIEIPDGLLTWFLWTIRNEYYLFWQETEKPCHIDSSTMRLKLQ
PRLAEDGLGFDVLLHREGKPPQSILDSEVTFHGQLPLWVCWRRGFYPVHT
SLSSGLVQEMVQHPPAIPQEDISEFLDRVWTQLPASDLYGQEEFLEHMEP
IFVPASYNPKLYLDEEGSLLTLQIQNIYETIHGEFLLPGPNPEFQTGSYP
FEGHTFLLRRQQEEEAALTQKLIEMNFQPRNNRVWFLEPEEAINFLLDAY
PKLIAEYRVYGEKALSRYKVRLSQPVISAKVESNEEEKWFSLDLNVEYDG
QSVPIEKIWKAWTQGKRYVQLKDGSYTSLPESWLKTLGHKLRAMGLDPEK
APKKRFEQYEAPLLDNLLEDLPEVQTDSFWNALREKIHTFKEITLIEPPQ
GLNATLRGYQQQGLSYLNFLREYGFGGILADEMGLGKTIQTLSFIQYMVE
TGRTGPNLIVVPTSVLPNWDREAEKFVPGLRRLIIYGTRRENMFSHISES
DLVITTYALLRRDLEELQEHEFNSLILDEAQNIKNPNTITARSVRKINAG
LRICLSGTPIENNLFELWSLFEFLMPGFLGSQHSFQRGIIKPIKDGDPET
LEYLRTRVKPFILRRTKSEVAKDLPPKVENVYYCALAEEQQELYGALAKK
LKDQVMADVDEKGIAKSQMSILDALLKLRQICCHPRLLKLDMPGLTTNLP
SGKFDAFKDMITDIVEEGHKVLVFSQFVQMLHIIRSWLQINDMPFCYLDG
TSKDRFDQVDRFNDSPDIPIFLISLKAGGTGLNLTSADYVIHYDPWWNPA
VENQATDRAHRIGQKNQVFAYKMICQNTVEEKILKLQDMKRGVADAIIPG
QDSWKSLTRDDLEMLFDV
>Dde_0235 Protein of unknown function UPF0074
MLTSRRIRLTLPVNGARPDASRALLTCRAPGGYPSRSGALLHYFPTSHFA
DMKLSARTRYAARLLLDLAQHATDAPRTASALSEQTGVSVQFIEQIIKPL
KKAKLINSVRGAAGGHMLSRAPSEITLAQIVDVMEGGIRLTDCCTDNELC
TRTPTCKTRVAWLRISEVLERELNSITLEDLMSGEHLFNICGSDEGLDVR
LEDLPEQEESEDCGVCGGGI
>Dde_3179 putative transcriptional regulator, AsnC family
MAQTFTDTERAILRIVQKNLPDSATPYADIAEQTGTDEQTVLALLRRMKE
EGSIRRFGASLKHQKAGYTHNAMVAWIVDKDTVDEVGRQAAEHRLISHVY
YRPSTAPDWPYTLYTMIHGRHENEYLEVIDTLRKETALEEYAVLNSLKEL
KKTSMTYF
>Dde_1561 putative transcriptional regulator, TetR family
MRCSPCRMQQAHTPPHSAKSIKHDVKRRIILDAARRMFAHDGAGSVSMRN
LAREVGCSAAVLYRYFGSRESILWELRCEGIVLLNDALMGAADAADPLLR
LQQLGRAYVSFGIDNLEYYELMFRTPFYEFDAGSLPDGLPDDALVLLHST
AAECLELGYFAGSDVTTVVSSMWSLVHGLVSLILNGRAPLMMGALDTHAM
IDRVPDFIAGLARAARGGI
>Dde_3132 hypothetical protein
MCQIIRTFELVRQGDMVIEDIVTAVKVSGVPRWYPFEERWRWMRLMYMQG
KATPQLLRTFLSRLSAHTPYTLCTLQDLNVRSGVEIVCPVLRDTGVFDL
>Dde_3135 regulatory protein, ArsR
MYKNWLRSRTVLTVFCFFDRATSTFLDSDSSSKLKITAGPETMSSALALF
KALSDETRLRLINVLNRFELSVNELVAILEMGQSRVSRHLKIMTGAGLLS
SRRDGLWVFYSAPAEGPGRDFINAVMPFVTKDITLHADLDMARKIIEERS
RKTRQFFNSIAEDWDQLNREVIGDFDLPAAIVSHMPRCRVAVDFGCGTGT
MLKAMMQKAQEVIGVDGSPRMLELARRRFEEDAGRVSLRIGDLEHLPLAD
GEADFAVVSMVLHHLSHPGAALREIRRVLSPGGVLVLADFDKHEDERMRT
EYGDRWLGFDLPALTEKLTGAGFAVRHSELQNVERNLSIHLIVAQNNS
>Dde_1635 transcriptional regulator, Fis family
MCRFHPARLCATMFFAVTCREQHNVFDLNHAGSRPRSQRRGRTPQSALIM
NQINTQDSRLQPYLGTLQRIVSDMGPQRPFQSSLKSLLRTLAENHHFKRP
HLVIFDPETQTLKLSLTHDPTKAQDVEYSPGVGVTGQVFSSGQPVIVPRM
KDHPSFLNKAFGRSEEELATLGFICVPVLGPGEEASPREVIGTLSVDTPI
TDLPSLEGQCRFLQVVAGMIANQAAYLQEEMARQKHMMTQGLIGGDVAEN
TVQAANIVAASKSMRLVLNQVAQVGPSRATALLRGESGTGKELLAEAIHQ
ASPRRDMPLIKLNCAALPSDLVESELFGYQKGAFTGAVQNKKGLFELAHK
GTLFLDEIGELSASAQAKVLRAIQEQEIQRLGSEQTISVDVRLICATHQH
LEELVESGSFREDLYYRINVFPVFIPPLRERREDILPVAEHFLKEYAEEY
QKSIKRISTPAIDLLTQYHWPGNIRELKNCIERAVLVCDEQVIRTYHMPP
SLQTAESTATDSSLSFCEAVAKFEQELLVDALKKARGNMLQAARDLRVSY
RIVNYKVKKYGIDAKKFAVSKGRMGR
>Dde_3047 serine phosphatase
MSKTTRFLDALAEVSVQTKMKIILFLGLVMFPLVVLVLNDSLERRGLNNF
IAVWTAGSLLLFLPLTRGALHLLVLRSVHYLNGLCEQMKAGNLRPFATLP
PEPKEGDELQRLRHNMFWMGHVIHSRQHELAVTMEHLKETQNQLVSSIEY
ASLIQRSFLPARSELAHLFGDHFLLWSQRDTVGGDSYWYKQTPQGFFAAV
IDCTGHGVPGAFMTLIVHSLFERLDISAVDGNPAALVGAMNNSIKNALEQ
HDRKAASDEGMDCSVCFVPAKRGVVRFAGAGSSLFVTRADGTVQEVRGDR
SGAGYVRTARDAVFTNHDIPLETGMRWYMASDGFADQIGGEKNLPFGKKR
FMALLSRTAVLDCAAQQRALEEAFAGYRGHQPRRDDVTVLGFTVQSA
>Dde_0403 transcriptional regulator, MarR family
MSNLQRHPIWKRHFKSAAALGDYSTRELSRRLGNDPISNLTQRQIRMVMI
IRDHTESGRPGMLLKELAEKAEVSPSSASTMVNALVRKGILERRNCPEDR
RAVRISLSGPLQSYLLASDQLLNEKLAGISSIIGEERMRCWSEVVDIIIR
ELETTR
>Dde_2039 transcription-repair coupling factor
MQFEEIAKRLGGGAAHSLHVARSGPATRARLAKELIDQGRSVVLVARNAD
ELAELRALATLFSPDESSEDVSLTVPAWERRWIIIPQHPAGSPGRTAWAA
RMASLYALNRRHMPQAVIVSLDNFIPKLPPPSLFDKHQLVLSTGEDMSPG
LVMEQAVEWGYTRTAYVTQPGEIALRGDILDIFPPGYAKPVRLDFFGDTL
EEIRLFDPSSQRSKGNLAEVTLIPTAPVVLEGAPRAEARSFWQRAAESGL
LPDGAPAALDVAAGEARATLLPGVYYQDAVFLERWLPPDAVYILPAERDV
AEALKQSARTWDDFSDQQEREYGIHQPAAMTIREAEDVTALFGQTVRVYF
EELVMGVEQKGENLPERGYEVFQDLFYEKEQSDRPWQTLIEALKEWSRTR
RQTVLSFGSARSRAKFLSLAQQDGISPYLRYDKSTAGVFALVSAFRKGAE
LQWDNSVVLGEDVLQPRTRQQRVRSGAFAGLKSYDDLEAGAMLVHRDYGV
ARFEGLLRMDLGGVSNDYLLLRYAGDDKLYLPVDRLSLVQRFKGPDGTAP
SLDKLGGAGWSASKSKARKAIERIAHDLVEMYAWRKVAKGYRYSPVNDMY
REFEASFGFEETPDQARAIEDVLDDMERAEPMDRLVCGDVGFGKTEVALR
AAFRAAMDGKQVALLCPTTVLAEQHFQTFRSRLGQFPVNVGMLSRFVSRQ
RQKEVLAACERGQIDILIGTHRILSDDVILPNLSLLILDEEQRFGVRHKE
RLKKMRRNVDVLTLTATPIPRTLQLSMSGIRELSVIETAPPERKPVKTAL
IDRDPDILREVLLRELQREGQVFWVHNRVQGLERVAEYVRSLVPDARVGM
AHGQMSEKALEETMHKFWHAELDVLVCTAIVESGLDFPRANTLVVDQAQM
FGLGQLYQLRGRVGRSDRQAHAVFVVPDVDGVPELARKRLKIILEMDYLG
AGFQVAMEDLRLRGAGNILGEVQSGHMVKIGLDMYLEMLEEEVARLKGEP
VREDVQTELNIGITAHIPEGYMDDGRERLKYYKALSSAADGAAQESIELE
MRDRFGHFPQELQAFLGILRLKRYLGTLDVQKADIFADKVRLTWAENAGA
VSPATLVGWVAERAGRARLVPPAIMEIQLPEGSAFEDRLSALQSELELLR
AQ
>Dde_2776 putative transcriptional regulator, ArsR family
MPNELFASRIIAMPKTAEHYETRAKIMKALAHPSRLMMVEALSHGEQCVC
ELTSLVGHDISTVSKHLKILKEANIVEDERRGKQAYYRLKIPCVMNFFNC
MGSILAQDLK
>Dde_3112 Protein of unknown function UPF0074
MKLSARTRYATRLLLDLALHDDNTPRRASMLSQSTGVTVQFIEQILKPLK
KEGLVTSVRGAAGGHLLAADPQELTLGHIVRVMEGGIHMTECSRDETACE
RAHQCRTRQVWIRISRAMEQELEAITLSDLMQDASIIASSPADRRG
>Dde_1748 DEAD/DEAH box helicase-like
MFLDNKKHGKVGETLLQSIDKQSELAVISNAFSIFGFDALKKSISKVSKA
RLLLSCNRKDGSLSQLLAGDEFETRFRNQLNQSYIARECAEWIKKKAQIR
LVKNPAALGQNLFVVDGKPSPLAIQGSSAFTCEGLGFAESDRHHMNMCVS
DAPNVSPLLSWFETLWRDTGLTEDATSTIVNGLETLHKDNSPEFIYFLTL
YNIFNDLLDDIDEENIVKTKTGFHDTIVWNKLYKFQRDGVLGAIDKLEKY
NGCIIADSVGLGKTFEALAVIKYYELRNDRVLVLCPKKLRDNWSIYTIND
KRNLLAKDRFNYDVLNHTDLTRRTGKSGEINLETINWGNYDLVVIDESHN
FRNNTKSDNGLTRYSRLMTDIIRSGVKTKVLMLSATPVNNRMNDLKNQVA
FITEGFDAAFADNGITSIEDTLRKAQTKFNQWQKLAEEERTAEKLLDSLN
FDYFKLLDMLTIARSRKHIEKYYDVAEIGEFPERLTPINIKADIDLNNEF
PALRDINRTIRRLNLSAYSPLKYVRMEKRNEYDRKYDTLMKDGKSVFRQV
DREQSLVHLMRVNLLKRMESSINSFSLTLEKLLREVTNLLQKLDDHNGSE
IEELSIEDIEVDSPEFDDFLIGRKVKVLIKDLDQIRWKQDLEDDKEKLER
LLAVSRAVTSNRDAKLDNLKSQITAKCQEPINARNKKVIIFTAFADTASY
LFEHIASWAKTSLGIHTALITGGGANKSTLQSVRSDFDALLAAFSPVSKE
RSKIDDTVSDEIDILIATDCISEGQNLQDCDFLVNYDIHWNPVRIIQRFG
RIDRLGSKNKRIQLVNYWPNMELDEYINLEARVSGRMVLLDISATGEENV
IEQDSASHMNDLEYRRKQLQKLQETVVDLEDLSSGVTITDMTLNDFKMDL
SAYLKDNASQLESAPHGLFAISRLESDLAADGLEPGVIFCLKSKKDEPSD
DGYALAPFYVTYVSDDGDVTLGFTQAKKVLDILKKQGVTHKKPDSALLED
FNRRTQSGKDMRHYCNLLESAVTSIVGKAEEKGVESLFSRGGTNFSKQSF
KGMEDFEVVSYMIVEAK
>Dde_0621 regulatory protein GntR, HTH
MHPRSTKNEACLYACIDPLIRDTFYEYLQGHFNDVILCSAPPDAAVFPEA
FMSIPLNHNTPLPLYKQLAAYLRQRIELGELEPGTKLPSIRHMARSQGIN
RITVETAYAELEADGLVTSRRGSGTFVLPPFPGHDGPQADTPGRWPAWQH
AAAERFEAIWPGHPAPLHSGATPAGVISLADGNSDPLLFPFEAFSRTLRE
VMRRDGTAALEYEEAAGYRPLRRTIARILVDQGIGVTPDNIVVTSGSQQA
IFIIAQVLLRKGQTVYTETPTYPESLRLFRTMGMRIAAIPMDSGGMRTDL
LEQAMRTHGEGLILTMPTFHNPTGICMDGHRRRILASMAEAHGIAVVEDD
YAGDIRYEGHSQPAIKSLSAAGNCLYIGTFSKMLVPGLRVGYIVAEGPVL
TQLERYKRMLDLSSPGLVQRVLERFVDVGSYRNHLNRLCRTYRMRRDIML
DCAQKWLPRCVHITPPSGGLFAWLRLPEDVHADALAETAPHHGVAIASGT
AFFPQPQEGARHIRINFCRHDENTLKEAMRRLGTAMQKSIAATKYMK
>Dde_0960 putative transcriptional regulator, TetR family
MQDEKLPRREREKRRHRRQMLAAALELFSKKGYHNVSMHEIAERAEFAIG
TLYKFFKNKEHLYKALMMEKAAEYHHTLSGVLSREGDVLTILKDYISAKA
GIFADDVATLRLYFAETRGASFNIKAGLDQDIRKLYDELVEQLASTLEKG
IRKNVLRDLNPYYMAVALEGITNAFLFCWLEDPERHSYKANAPVISDMFL
KGVMAE
>Dde_2226 transcriptional regulator, LysR family
MCVKPNRPNALALSVLPMYCIDMIDFRRLEAFCKVYELRSFSRAGDELFL
SQPTISAHVSALEKELDVRLLDRMGRGVLPTPAGEILYRHAMTAFASLET
AHLEISQLQDIITGEVPVGASTIPAQYLLPPVMAAYMRSFPEVQLQLRTG
DTGEIIRKVGAGELTLGVVGAHDQQPDIVFTPIIDDELIIIGAPDFAPRS
GSVSCESLADMPWVVREAGSGTWKIFSAALGTHGIDCRSFRPVACVDSSQ
SVIQCVRAGLGVSVTSRIAVAEFLSRGELVEITVDGLDVRREFFCIYHSR
RQLFPAARHFIEFLTKKCR
>Dde_2910 putative transcriptional regulators with the CopG/Arc/MetJ DNA-binding domain
MHISLTPQLEDQVKRKVASGLYNNASEVIREALRFMETHEVLVYQMKLDA
LRRELSAGAAQAEAGEFIDGDMDAILAEAKERRG
>Dde_1838 conserved hypothetical protein
MNTGQNFRRCRFLCSAFFVLLLSCCIVTVQHAAAKTDDQTPRTSQEVNSA
LDTLLAAVTDKTIPLTAENLEPLLELVVGKNATPDSLPQPSKNEAGSGIF
LRDTINVPLTTFLEYCYDPAISPAALFPASVRLGHWKPGSDIFAAAPLWK
QAENLNDMHILRGTEYEEITPDHFSGCYYGYDLHRLLILMPWNGKRVFIS
VSRQAGPSGVGLKGAIVGDDSDWEYVYTGVEGGTARAIGWMDTYMYDSAS
VTFFFDDETASRTRYAMFKWLKAGWAGLNVVKKSHIQSGTERFLKGFKAV
IESPRLPPAGEIATYAEKLKMQPEEEQIASLARYSARLEEISAEDSILKR
DDFQQVLRNGGYGASLTAEQRAGVLVKQYIKHQIGKSPLAGLEQHTQPEG
>Dde_3051 putative transcriptional regulator, Fis family
MLEDIYGHDLKQLVNFQRKIIDLCADALMVVNKEGRLIYINESFKELHGL
GEEVLGEPVSNIIDNTRLNIVAQTGIAEHDCLQEIENHSFIVSRIPFYED
GNCIGAVGMIRFRHVDEIQKLTENIKELKNEIERLRKSKKASDEAEYTFS
HIPGIAPAAREAKNKAMLAAPRNVTVLLRGESGVGKEVYSQSIHNFSQRC
DGPFIHLNCSAIAEHLIESELFGYEEGAFTGARKGGRRGMFEQADKGTIF
LDEIGDMPLAAQVKLLRVIQEGKVSRIGSEKITKVDVRIIAATNRNLEEM
VKEKTFREDLFYRLNVIPIKLPALRHAVEEIPILAKRIWKRMSRKNGMFH
KYLNSSALIALQEYPWPGNVRELQNFLERCMIMSRENDITAEIVNTVLQN
GVACDLMQPEDALELLPLAELVEKTELQAISRALSAANGNRSAAARRLGI
TRPLLYKKMIKYGLK
>Dde_1352 putative transcriptional regulator
MQAFKRPAVLRETFFAGSGKKTEDDMSGCGLKHCAGRTYYCSVELTIQLI
GGKWKPIILYHLGTRGTHRFGELRRTIPNITQKMLTQQLRELEKDGIIER
KVYPEVPPKVEYSLSTTGHSLMPILKQLCQWGKDYEKHFGADSPAAEQNG
SSSAA
>Dde_2537 putative transcriptional regulator, TetR family
MARKTKEEAEKTRQLLLDCALTVFLRKGYSATTLNDIAEEANLTRGAVYW
HFKNKVDVFSAVMDKAFDPIQGWSAIFLSGAETPCLC
>Dde_0897 regulatory protein, LacI family
MKKIKPTIKLSDSGNLHIHIPMFIRRMRGRKMVFTPDTLDGENEGMPETV
QTAIVQSLARAFSWADILESGEIKSISELARDLDVDSSYVARTLKLTTLA
PDIIEAIINGEEPSGLSLSKLVKTFPLDWSEQRSFFGFS
>Dde_0977 two component transcriptional regulator, LuxR family
MGEGYSLIIAEDHTLLREGLKSLLQSVPHLIVTGEASDGQMAVDLCDRNQ
PELVLMDISMPRMDGVQATRLIKKRHPEVRVLVLTVHGAGEYVYAALAAG
ADGYVLKDASNDEFILAVESVLGGKIYLSPGVSDAVVKGYLNDARGQSVS
SSWETLTPREQEIFQLVAEGYKNREIAEMLVVSVKTVEKHRSNLMQKLGV
HSAAELRALALERGIILRMRSDG
>Dde_0173 RNB-like family protein
MSATSPLVQYPGPGCIVEFMQGNKPQIAWVQEEQSGKLRLLTQSKRETKL
AAARVMPWAGPQYGADKSRQEALELLNQHEERRNTRAAALDPLELWELAQ
GEVQAATAQWFAELLHESPDADDIAAMGRVLLECKTHFKFQSPEFEIYDA
EKVHARMTEQEARRKREQLASEGHDFLRALWETHQKRRTPPCTPEDAGLA
AEIEALLRKRIAEPDDHDSEQLWKQISKGLPDVPHLPLLLAQAWGIVPAH
HNFHLDRADYDRSPDWHAPHAQALADLRRRVLAARTEPCGIPFISIDSSS
TRDIDDAFHIEPRADGGHRLRLAIACPALGWEFGSELDKAVMRRATSIYL
PEGNLHMLPEELGTDFFSLIGQQERPALVMEFDIAPAGQLEATTLKACWV
QLAANLSYADCEAVLNGDPGWDAPDNPAAAFADQLKAGAALSRILLEQRV
SCGAVVIERPDPKTTLTGTGADTQVEIEHDSPTPASCLLVSEMMILANSG
IALWAKDRDIALLHRTQDVGVPKEYAGVWDQPHDIARVVKALSSAVLETA
PRRHSGIGVPAYSPVTSPLRRYPDLVNVAQLIHYLGTGTPRWSRDELDAM
LPLLTARLDAAGQVQRFRPRYWKLLYFKQKGDKTWWDAVVTDENDAFVTV
SLPDQQIFVRGRRSSFGERAHPGTRLMVRIGKVHPLNNEIQILDVMEQ
>Dde_3327 transcriptional regulator, GntR family
MTHDTVPVAHRELERGNGVALWRQIQAVLEHDLRSGYVAAGEKLPTERQL
AQRFGVNRHTVRQALAELARKELIVVEQGRGAFARRDKLDYALARRVRFS
ENLLRQSRIPSERLLGSDKVQAGRRAAEALQVLPATMLLRLRTVGNADGR
PLCCTTHYFPYGRFAGFAAVYGQLHSVTAAFRALGVADYVRTSTRITSRM
PDAAEVRALGLARQTPVLVVESVNADGAGTPVEYGVCVWAADRIQFVIDA
A
>Dde_2231 DNA-directed RNA polymerase, alpha subunit
MLIKQGDRLINTRNWSELVKPDQISRASESADTMYGKFVCEPLERGYGTT
IGNAMRRVLLASLQGAAFVAVKISGVQHEFTTIPGVLEDVTDIVLNLKQV
RLAMDTEEPQHLELHVNKSGEVKAGDIKCNQHVMVLNADQHLMTLTEDVE
LTFELEVRMGKGYVPADMHEGLSDEIGLIALDASFSPVRKVAYTVEQARV
GQMTNYDKLILEVWTDGSISPEDAIAYSAKIIKDQISVFINFDERISEQE
NEGRSSASDVNENLFKGIDELELSVRATNCLKSANISLVGELVQKSEGEM
LKTKNFGRKSLDEIRRVLGEMSLDFGMKVDGFEKKYQEWLKRKQQNEA
>Dde_2795 Prophage antirepressor-like
MSEGTPKLKEDIIMGEISTLTLNGMADARTIVDEDGELWFVAMDVCKHLG
LKPRDSVRYLDDDMKKHLPRTALGMKPGKPLLIINEPGLYTLIFQSRKPE
AIAFQDWVCKEVLPSIRKHGAYFMMKPTDTDESIIQKATQIIALAREDDG
IECPDILRELADKLEAALQGQFMPTFTTSTCKAYSNDTSDLGPIIDV
>Dde_2538 hypothetical protein
MFVLTEVLQHWMLKLAVDDTMQKALELVMTKTEHSEELSEHHERVIRQDH
DFIRNLESVFRRGIAEGLFRSDLDPAVCAATFMALCSGLARLNINHPSEL
DMAKHCTMVSDIFFSGVKAPSTRSE
>Dde_1660 DafA protein
MTVNRHSGDLPIRSEYIAWAEFIELTGVPPVRLGELVEYGWLVPVRTAGA
EYLFRRLDVYRLRKLQRICDDFELPSVGGVIIVDLLERIDQLERKVSSLE
KLL
>Dde_0247 DNA-directed RNA polymerase, omega subunit
MARITVEDCMERVSNRFLLVQMAIKRVKQFREGYEPLVPSKNKEIVTALR
EIAAAKVVPEDELSAAAAENRAE
>Dde_3161 NusA antitermination factor
MSMELKKAIDQISKDRGLDRALLIETLEEAVRTSVIRKYGDELDLEVNFN
EETGEIEVYQFKIVTEEVEDEASQISLEDARAHDPSVQLDDEMGFRLKIE
DLGRIAAQSAKQVIIQRMRDAEQEIIYEEFKDRLNEVASGIIQRRDKTGW
IINLGRTEALLPKDEQIPREHYKRGDRVQAIIIEVRKEGRGPQVVVSRSH
PDYMAALFKREVPEVDDETVQVMGVARDPGSRAKVAVTSRDRDVDPVGAC
VGIRGSRIQNIVQELRGERIDIVVWSPDIATYARNALSPAVISRIIVDEE
ENMLEVVVPDDQLTNAIGRKGQNVKLASKLLGWKIDIYTETRYNEANAIG
RGLEQLASVAEVPIEQFVAAGFSSIEELRDATDEELMAVEGLTPGKISDL
RAAINFLAPVQRNAEDGEEEEAADGENAE
>Dde_1942 metal dependent phosphohydrolase
MMKRTNRILIVDDNHVNILILKQILEQEHQVFAAVNGYEALELASGPMKP
DIILLDVLMPEMDGYEVCRRLKENDETRDIPVLFVTTQGEEEDEAAGLAL
GAVDYIVKPVRPSIVLARVRNHLQLKTHQDQLEDLVRDRTRELQLTQDVT
IFSLACLAEMRDNELGGHFKRTQNYVRLLASAAKAKGAYKEYWRQISVSM
LHKSAPLHDVGKVGVPDNILLKPGKLTEEEFAIMKLHTVYGRDSLERAES
LLQYKSFLSVAKEIAYSHHERWDGRGYPEGLAGDAIPVSGRIMAVADVYD
ALISKRVYKDPLPHSTAVQIVLEGSGNHFDPVLCELFERHQEEIRAIAIA
DADLEEEREALRR
>Dde_1708 Ribonuclease III
MFEKLQDVLCYRFADVRLLETALTHSSYANERGTEIEHNERLEYLGDAVL
ELTVSEQLFTRFPEAREGQLTRMRARLVSKPSLAELARELKLDTYLLLGK
GEESQGGRTRSSVLSDAFEAILGAIFLDGGYAAAGKTVLHVFSSRWPQGA
EAARTKDAKSTLQELTQRLFKERPVYTLLGSSGPEHEKIFKVRLLLPDGR
ALETEGQSVKRAEQKAAGLALELLEGESA
>Dde_0772 serine phosphatase
MSALPVWKLALVIAAVTGAALLLRRLVVLPHVLSLPVARRAERLGQCDFV
LFAGAGVLMALANTVINGVPLLSSGGKLVLGMVALGVFVSIDLALECERR
SIRLAGITEPERLPPRRFSSLTRKFFAVATVVTVLFSLIVILAVFRDLWW
FTEAGLNEGSLRFVKRSILIDLSFIMGMLLVLVINLALSYSRNLRLLFDN
QTQVLVRVSNGDMSGHVPVATRDEFGFIAGHTNLMIDGLRDRLRLMEGLA
VAREVQETLLPSGVPHAAAQPSADGSGRLDVAGRCLYSDETGGDYYDFLE
NWLTEEDDTPRTGIIVGDVTGHGVGAALLMASVRAFVRMRAATPCSPAAL
LRDVNRQVVRDSYGTGRFVTMFLLCIEPVTHSISWAAAGHEPALVYRAAD
DSFTSLQAAGLPLGTMPGTVYETSCRRRLRQGDVVLLYTDGLVEARNRKG
EMFGRDRVRRVMRIHAAKDAAGLLEAMGGVVRRFKDGAPQEDDITMVAVR
VL
>Dde_1552 putative transcriptional regulator, Fis family
MKLKLELIFKDRVGVVSDLSSLLAGHAFSISSMEVERKTDKAFVYIEAEK
WDEAVERAALFKVLSRIPDLLEFRIVETLPGEEREKRFKVVLDNISDGVL
SIDARGRVTAINAVLRQVYGCGPDAAGKPLASLGLPDNGLLECLEGKELL
NAKREIATSDGRVQYFVTRRPIRDSNDRIVGAVELARDMREIRQLARSIT
DPEQIGFGDIVGRDAAIAFAISFAEQVAATDSIISIRGESGTGKELFARA
IHTASRRSGPFVPVNCAALPEQLLESELFGYERGAFTGGRREGKQGLFEV
ARGGTLFLDEIGDMPLASQVKILRVIQESRMRRLGGSQEVAVDTRIITAT
NRTLERLVEEGRFRQDLYYRINVLPIHIPPLKERLDDIPLLVEHFLLNLA
ARLDKPARSLTPDALDKLRAHHWPGNVRELKNVVERAAILCQGQIVRQSH
ILFSHEIEAGMSRQALRQGARVASTGLRDAVADFERGVIRDALTRTPSIR
KAAQALGVSHSSLLAKMRKLGVGSV
>Dde_0692 response regulator receiver domain protein (CheY-like)
MMMQDTVHAIVVDDQEKLAEVMTKRLKKRGMDVTMVTSGEACLKALAARP
DTDVVVLDISMPGMNGLETLAVIRKQYPLVQTILYTGNPTPENGIQGQEL
GAFYFLTKPAHMEELVDLLHSAKARKQRKAEQVSRLAQSAMEQPQ
>Dde_3719 Protein of unknown function UPF0074
MRLLTNSRYGTRMLLDVAVHGRNGPVLMRDVAERLGVSQKYLEKIARQLK
EAGFLKAQRGPNGGHTLARDVTTFTVGDVVRLLEGGTDIVGCGRDEEGCT
HAPGCLTRMLWKEAGIAMFERLDRFTFAELVAYSDQGVRFGDFCQTIEDE
HCRHASGSRARKGA
>Dde_2344 conserved hypothetical protein
MDAHFLRRLVLELTPLLAGARVEKIFHPADATDTLVLFAAGTKLNLVLRS
GRSCPLLFPSSLRPDNPPSPPAATMRLRKYLKNKKITTVVSDWINRRFAL
EFAGCSCRWLIADLHHGLSLSESLPAGFGDDVHWPAPPHWPELLRQVAQG
VRPAGVPLLTPALRRTLVHMDPADAHALMLDLENPAGGDTFVYYDARHTA
VAVSAWPLAPQECSGWTEAVAVSAMEGARLAGEAVLYTDMARRSRAHADK
ETGAAVKRVQRALARLQQEEERMRGYVAQQQDAVLLQRCLYRFASDERRA
DVRVEGRDGAPVKIALDPLLTVRENMEAMFRRAAKGKRGLENLAQRRAVL
ENDLVRVRQGERPEGIREAPVQRHGGKVRTGRPAAAKSAGPVLRFRSSDG
FLMLRGRNAAGNDAVVKGGSAFDLWFHAQDGPGAHVVVRLDHPGQHVPEQ
TMIEAASLAAARSWQRDDAAVRIMCALLRDVRKVKGAAAGAVRVDAVLRS
LVVAPDSSLEESLRI
>Dde_2536 hypothetical protein
MARELLSLREIGRRLDVPPSSIVYYKDRFARFIPTAGGKGRRVKYPPEAV
TLFKEIREMFERNLSAEEIEAHLSERDGYAGVHHAGLSGAGAAGFDGASA
GFVQELSGVLEKMSGLLEAQAGFRQEIGALRDELSALRHERDEQAARYEE
TIRRLEQEMEILRAGGAYRAAGDRTEGSARGASSGRSGGSAPRPPASFLG
RPLVIHRGGEYIGVVGRGKPFTLAMLIQLIERNAGSQKVQGMEWQYSNGQ
WLLVIHSRDAAGTQQHRHELRVVRTTTPSGNTVTQLCSLCIDGEDVPDNF
LLALFKSIKDGLEG
>Dde_3226 phage shock protein A
MGIFSRFKDIVSANMSAMLDKAEDPEKLIRLMIREMEETLVELKANCAGT
MAEATRVGRELDVVEKARERWAQRAELAVSRGREDLAREALLEKRREQER
ADALLREMAGCEALVAEARNDIATLEEKLASAREKQRLLMQRHAHARVRT
QARRDVNRAVSLDAMRRFDELEQRVEFMEAEAEIEVPQRKPDLEDRFAQL
EGADEIERELDALRRKVNPSA
>Dde_0126 putative transcriptional regulator, MerR family
MELLLQWNFVSPRKKPSTNSYPLLCSVRQTLSIGGRPKIRPICAFPRFFP
VHVAIAWRTYYGYGSILSILSSRGFTRREETMPHRTAADTLLTIAELAAR
HDLPESTARYYCKRFLPFLPHTGEGKRRRYLPEALEIFSFIVAEIRTHKN
AMTVEHALRRHYGSALGAAPDCTPQAELPPAAAVPSAVQLSAEYVHQGQA
ALFALLEQQTKAMESIAESLAVMNRKEEGIAALEQTLGARESEIAELRKE
VVQLKSLLSTAEQVHQQDLDQMRKWLSKIAGERSGMRGQDM
>Dde_1264 putative transcriptional regulator, Fis family
MLDSIAPAINRIAQVISIVIGLDVEVVNAEFVRIAGTGRYAEGVGTSIIE
AGQVYRTARRTGRPVYVEKPRFHPICDGCKKKDTCEEKLTLCAPIKIDGK
VEGIIGIICFNEEDRARILKTRDSFLDFVDMMSNIVISAARDQQRITMMS
NTVDMLQSVVDAYSDGVFVFGRDGQLTYVNEHAKRTIRLPDPPLPANLTL
TATGNTVEDADEYELSYNGKELMVMGRTVELAAQDPRFARLVIFEHQRDF
TRRMSRFTSQAHSDGLGAILGNSPAVVRLKERVRSIATSSSTVLIEGESG
TGKELFARAIHKESNRHDQPFIAINCGAIPDSLLESELFGYISGAFTGAR
SSGRIGKFELANGGVLFLDEISSMPLYLQVKLLRVLQERTITRLGSNKLI
NIDIRVIAATNDNLSELIAHNSFRSDLYYRLKVIPFEIPPLRERLEDVDM
LTEHFFRKYGERFGKNLRHIDPQCMDMLKSYPWPGNIREFENAIEFIVNM
MPENGVVTPAVLPPFLHAALRGEKKEQLDRQDDIIPLSELERQAIQRALD
RFGSTTGGKKLAAERLGIGLATLYRKIQLYGL
>Dde_0792 acetyltransferase (GNAT) family protein
MQKTTQTPVVHMMRPHEAGAVCALIAEVFDEFVAPEYCAAGAAHFHTFVQ
PDVLQGRIADGGMVFVAYMGDELAGIIEMRVCEHVVMLFTAARWQRRGIA
RRLLDAALEECRALNGTVRRLTVNSSPNAVPVYARLGFIADGPEQERDGI
RHTPMTKLCDADAPPAV
>Dde_1248 GreA/GreB family elongation factor
MNNAPAITITAQDAERLESLLDSLSPDAFPQLEVLERELERAIIVEPDKI
PPTVVTMNSVVRFKLRPSGAVHRLKLVYPRHSAAEGETVSILAPVGSALL
GLAEGDEITWPNASGGTLQLVVDHIEYQPERSGNFEL
>Dde_1899 hypothetical protein
MELIKFRASNRHTFSAPSPTKSSNWSNSMGVKRTGDWDKARARLNAGMGP
RLASALRQATIRNALFLAREIQRGIRSQSPGGQPFSKLAESTIARKGSSK
ALIDTGFLINAITQRIMADKAFVGLLRGTVNQDGEDIVNIGAVMEYGATI
KHPNGAIIIIPPRPFLHPVMEKYRDQIAENFIKAIRNEGF
>Dde_3702 transcriptional regulator, AraC type
MLYTAAKGNSIMQEHAHETYRMRIMRAILWLEEHMNEAVSLDDMAAQAHF
SPYHFHRIFRGVAGESVMAYIRRLRLEKAVHRLAYGSASVTDIAFDAGYE
AHEAFSRAFRAQFGMSPSALRRHVRKAGMIPAGVLGESAMTKVVAGFTLE
SLGLEPEVKVLAPVRVAFVRHTGPYAQCEAAWKTLCDWAFPQGLVMAQTQ
FMGICYDDPEVTAPDKIRYDACISVPDNVQAEHPVAIREVEGGEYVCAVW
KGPYTGLTNAYAALCGQWGGRSGREFRAAPSVEVYLNDCTSTPEQELLTE
IRMPLMPR
>Dde_1611 transcriptional regulator, AraC family
MIQERVCSKVETTGFSNFSLTTFCQRTGRGRDISFSYVQQDGMLDVGFCV
SGSWHVLLGGRKLSTGKGNVGMFHLPGDSWQSLYPPDTCIQGVGISVRID
ALRSMFEDEPVTHEGLNRLLRGGADATVLEFGQMTAQEMEGVKQVLMAGS
VDALRKLFLEAKTIELLHSFLVARNAQGRKPLTVAEIRKMASAVEIIAED
LEDPPCISGLASRLGMSASKLKSCFKEYTGDSVYSYIKKKRLENARRCIE
SGEMNVTEAAVSVGYSSLGHFSRIFKENFGVLPKDVSKGRYCLRHTAGM
>Dde_1230 hypothetical protein
MAISELISEFNVESSNQFEERLSRLMLVAKASGPSDLAKVLEINPSSVAA
AKKRQQIPTGWIEKIATTYSANANWLFFGEGPMYRGDEIAAAGQADQRPS
SEEVCPRCAKLKNQLEELRQEQRKERERCDELVQRLLQASDRLEEVGATV
LRLTQDNAELRIQLARAAPEPAEANRKSA
>Dde_2316 RNA binding domain protein, S1
MSSTQIQPVTTENFMSQHIQILSAELGVPRSGITAAAALLDEGATVPFIS
RYRKEATGGLDETVITAIRDGMTRLRALDKRREAVIASLQERDLLTAELH
GAVMQAATMTALEDVYLPYKPKRRTRAQMARERGLEPLADLLMQQRGRRV
HDDALAFITPDGTPKETAVPDSASALAGARDIVAERISEDTAARQALRQL
FREKGIISSAVSKGKEEEGAKFRDWFAWSEPAAKAAGHRILALLRGEREG
VLTVRLRPDDTAALTLLKRRFLKKQVPLHMQGSEETDSGNVVLAVEDAWK
RLLIPALETETMHFFREQAEDQAIRVFAANLRDLMLAPPLGQKRALAMDP
GFRTGVKTVCLDEQGALLHHQTIYPHTGTGKAQEAASAVRRMAEQFGIEA
IAIGNGTAGRETETFVKGLGLADHIAVVMVDEAGASVYSASETARREFPD
HDVTVRGAVSIGRRLMDPLAELVKIDPKAIGVGQYQHDVNQTALKQALDD
TVMSCVNHVGVELNTASAELLAYVSGLGPALASGIVAYRTQNGPFKSRSQ
LLKVPRLGPKAFEQAAGFLRIGTALHDGNPLDATAVHPESYPVVERMAAD
AGTTVASLIADAGLRGAIRPEAYVTDTTGLPTLLDIVNELAKPGRDPRPA
FELFRYADVHTLDDLQEGMVLPGVVTNVTAFGAFVDIGVHQDGLVHISQL
ADKFVRDPAEVVRVRQQVQVRVLEVDHKRRRISLSMKQSV
>Dde_0515 Elongator protein 3/MiaB/NifB
MFCAQTAQTGVGPAALSERYSQLQKELQLAYEAGESPFELAYYGGTFTAL
DDMWQEKFIALGRQYRHKGLVTSIRCSTRPDCVDVAGLQRLHRMGLDTVE
LGIQSFSNDALTRSGRGYTAHTAVTGCRIVREAGLGLGIQLMPGLPGHSE
GAFLRDVRTACSLGPDMVRLYPCLVFEGTLLASWWRDGRYRPWGVARASV
MLGMALNTFWKHGIRVIRAGVAHVPSLAGKVLAGAYHPALGSMARGEALA
GLVSFHTLMLGGKATELYAPRRFQGEFWGHRNTLVPRWARHGLGRSNVHW
WDKSFFLLS
>Dde_2457 metal dependent phosphohydrolase
MTTESIAVLVIDDDPAILQNIVCYLEDSDFICFGAADGAAGIETFERERP
DAVIVDLNMPGMNGRDVIARINAQSPTTPVIVVSGTGVIDEAVESMRVGA
WDFLSKPVRRMEELENAVRAGLRRARTMRESNEYKETLERMVKRRTRELQ
LANDRTEAILLATVQSLSTVINLKDAYTGTHQQRVALIAPAIAEELGMEQ
RAVEAVRLAALLHDVGKMGLPSEFLTKPSRLDANEMQFIRQHPQLGYDIL
KDIPFELPIPEMVLQHHERLDGSGYPRGLAGDDILPEARILAVADTVEAI
CSHRPWRPAHPFSHALHELTAGKNTLYCPDAVNSCIDLITRGDPRLTTFT
ATIKGLPS
>Dde_2500 transcriptional regulator, XRE family
MAKAPENFAETVKEVRQQLGLSQEELAHELGVSFSTINRWENSKTVPFKL
ARRQFEAFCERMKKQGKLA
>Dde_2805 Prophage antirepressor-like
MDVFLVVLVSGKASVIAFGTVRVLKGEGGGEIWFVAKDVCDALTIDTSNL
SKLLDDDERSTCPVQYTDQVRAVSIINESGLYSLILRSRKPEAKRFKKWQ
PRDRP
>Dde_0556 transcriptional regulator, XRE family with cupin sensor domain
MAAKKLGARICKFREERGMTREELAEAAGLGADFITALEEEDLYPSIGPL
QKIARALNVRLGTFMDDEVTRDPIVVRKSGRESDLTMQKARNKRAAFMFH
SLGKGKSDRNMEPFFIEIAPEPNEDRQLSSHQGEEFIVVVSGSILVRYGN
EEHVLEQGDSIYYNSIVPHYVGAAGDDKAEIYAVIYYPR
>Dde_2665 conserved hypothetical protein
MDSEIIKALKRFGFTQQESIMYVTLCRHGALTGYEAAKLAGISRSNAYAA
LSSLVEKGGAVVASDDTSKYVPTPRKELLVTIRRHCDETLEFLEQHLPEE
QPVEMPYLTVTGYQNTMDKVRNMLRLAQLRVYISMHSGNAAQLKEDMAAC
AARGLKVVILSDADPQISGAIFMHNAAGTGHIKLIADTREVITGVVDQAA
RTGQCLYSANEHLVYLMREALLNEIELIKIRSGMSGAEPEESPTRGK
>Dde_3731 regulatory protein, DeoR
MSKSAVRHKSLQEFLAERGYATIEELAVRFGVTPQTIRKDINTLAAEGRL
QRFHGGAGVPLGSSNIVYDQRKSMFMDEKRRIGELVAQHIPEGASLCINI
GTTTEAVARALLAHKGLRVVTNSLNVASILAQNSSHDVVVAGGTVRHRDN
GIVGPSAERFIREFRVDYGIIGISGIDEDGNLLDYDYREVAVARTIIECS
RHVYMVTDNSKFGRPAMVRMARLSDLTALFSNGPLPSPQWETLVKESGAE
LFLA
>Dde_1916 hypothetical protein
MKKKKRYANAKDVLPEELFEQIQKHYTGILWVPAPSRFYQERRDLVLALH
LQGISSQEISNLAGVTTRRVNQIIAAERKQDRDRQLAAASGK
>Dde_1892 putative transcriptional regulator, TetR family
MDAILAAAAQVFEAHGYAAGTTNRIAIKAGVSIGTLYQYFSSKEAIAVAL
LEQHIADTGHRLHEWVGHMVVEQHSLSEALNDYVTDMLEMHSRQPRLQHI
LLEETPIPERVHQALLESERQAAKTVAGLLRLYPEVRQSGLEHTCFVVVQ
SVESLTHRFAAHPDDEFIPRATFVNEVVTMLLAYLTCEARHE
>Dde_0329 putative acetyltransferase
MSIRPATRRDTEAILDIWLEASIAAHSFIDAAFWRDNIEAMRTVYLPSAT
TVCVYDTPQGITGFYALHKRHLAALFVAPRRQRNGTGRCLFAHALRQAGG
LTLNVYAENRQACDFYLAQGCTIAARNTDPHTGRAEYIMTCAPAEG
>Dde_0647 Protein of unknown function UPF0074
MKLTTRSRYGTRMLLDIAMHTHGDDQPVSIKEIADRQGISMKYLEKLIRV
LKGAGYISSRLGSKGGYMLARPPESILLGDVVFALEETVPTFECVDPEPC
CPRMDYCLTRTIWNEAAKAMYEKLNSFTLADLINDAELCPKQGQAC
>Dde_2480 DEAD/DEAH box helicase-like
MIFSCRRFQRAHSALRCGGCPEKRTADVVRCVRRPDGVCCRSSAHELDHV
KTGAAVSFARFSLHPALIEAVSARGFVNPTPIQEKALPPALAGQDILGLA
ATGTGKTAAFVLPLLHRLLLQGESARGTLRALVVAPTRELVAQIHEEVKT
LARFCRLRSATVYGGVGMHAQTVQLRTGVDIVLACPGRLLDHVRRGHADL
SHVDMLVLDEADMMFDMGFLSDVREILHCTRVRKQTMLFSATMPAPLREL
AEECLRQPVRIELDTCAIAPTVRHSLCPVPKHLKTPLLKYVLRAFARDSV
LVFVRTRHGARRLWQQLVKSGIEATCLQGNLSQGRRRAALEGFRRGTFRV
MVATDIAARGIDVSQVGYVINYDFPPSVEACVHRAGRTGRASNSGVALTF
VTQEDEPQVRTLERVLGGALSRWHAEGFDYSALQRTEAARPARLRREPRP
QRVQRVRRLLEDAAREQMAAARKVASHAGHGGDMHQDGQPVKPAFRIVPR
EAPAPLKPKPGQYVMKPQPPVIIRKRRGGA
>Dde_0383 Sigma-70 factor
MVRHYAPKIKFLALRLKGKLPKSVELNELISAGTLGLMEAFGKFQPKLGI
KFDTYAENRIRGAMLDELRRLDWFPRSLRQRVRLLEDTINRLEHEKGRRP
SEEELQKATGLEEKDLRSGLEALQNHLCISLDAIQETFAADGRDHLEGEP
FHSTATQELIERIASLIDQLTPREKLVLSLYYSDELNMRETAEVMGVTEG
RVSQLHSQALNRLRKQFHEQFGTQGAV
>Dde_0087 putative transcriptional regulator
MELEIDLLRCFAAVAEEGGFTAAGSRIGLTQSAVSQRIRRLEDRLGRRLL
VRTTRTLSLSTEGEMLLHYAQRMLALHDEALARLRASSIKGALRIGFVDY
FGPDAMPETIRQFIRSFPDIHLELHAGLGMELRQLFDHGKLDVLVAGDDG
QHTGTCIARDTLVWACHTAYNCAAARPAFMLDHLAAEPAATGAPVPLVAL
PLPCVFRSAAIAALESLQRPWEVVFTATGMASVLAAVRAGLGITVLPRSA
LTPDLKIPAPEEGFPPLPAFSTCIYANDNVNLQALEALTRHLRQQLGTQR
A
>Dde_2956 putative transcriptional regulator, CopG family
MGQTIRFGVSLDSDLLEKFDALCDERCYQTRSEAIRDLIRNTLVQQEWED
TGRDIAGTLTLVFDHHKSDLQQRLTEIQHDEHDLIITTLHVHLDHDNCLE
VLVLKGPAERVRNLAQRLTSTRGVKHGKLSLTTTGQDLA
>Dde_1399 ATPase
MHYLKDIMNTHSPTTINDLDISPFFDLMLAMARERSVEALLDLTERAYRG
THVISGALWFAENSPESPRGKMLRLMAHSGWTRHTPREWRHDEGTYTLVP
LTEPVIGECARTAKPMFAEDSAQWERPAWAENEGIHAYATYPLIFKSEML
GVMAVFYDRPMQDRLSDVMRMHRKMHTIFADSLAAALANARAFEEIQRLR
RELEMENEYLRRAVSTANNLGDDIVGESPSLKKVMEQIEVVAPTDATVLL
LGESGTGKELLAQAIHANSQRRDKPLIRVNCSAIPRELFESEFFGHVKGS
FTGAVRDRTGRFQLADGGTLFLDEVGEIPLELQGKLLRVLQEGTFERVGD
EQSRKVDVRIVAATNKDLLEEVRKGTFRQDLYFRLSVFPIHNPPLRERPE
DIPLLARHFDPATKLWTQS
>Dde_1771 Sigma-54 factor
MALELRQQLKLAQQLVMTPQLQQAIKLLQLSRVELVETVQQELLENPFLE
ETQEERPVSQAEERAPRAEEADPFRQELVKNADWENYLGDFASTGKQAGG
RDAEVPEEMTAFEARFSSSPTLEGHLSWQLRLSSATEKQLDIAEVIIGNL
SPAGYLQATVENVAEMAGAGTAEVEETLHLLQRLDPVGIAARTPQECLLV
QVEVLGYDRDPVLVELIRDHLEDLEKRRYKPLLRKYRLGMDDLKEYLDLI
QTLDPMPGSRFGNEQPAYVSPDVYVYKSEDDFIILLNEDGLPHLQLSEFY
KEGVKGTTDKEKDYVQEKMRSASWLIKSLYQRQRTLYKVVESIIKYQRGF
FEEGVSRLRPLILKDIADDIGMHESTVSRITTNKYVATPHGIVELKYFFN
SALALNDGTEVGSESVKALIKNLISEENPKEPLSDEKIGEILKEKLQVNI
ARRTVAKYRTAMGIPSSSKRKAVF
>Dde_1936 putative phage-related protein
MKIKPTITVADNGNLQIHIPMLIRRMRGRKTVIAPQALDGEITGAQEPVQ
SAVLQALGRAFSWADILESGQIKSISELARTLDVDGSYVARILKLTTLAP
DIVEALINGEEPNGLSLAKLTQTFPEDWAEQRRQFGFATD
>Dde_2674 two component transcriptional regulator, LuxR family
MPKTVVIVEDMGIVREGVRALLGGCPGYRIAGEASDGIEALQVVERCAPD
VVLMDIGMPRMDGADAIREIKRRFPRTKVIALTAHNKSALIFRTLHAGAD
GYMLKTGNCETLVGAIQTVLEGRRYISPDISQSLIDSLAGSDPMDFANPI
DTISVREKQVLKLIARGMGNKEIAAELCISHKTVEKHKASLKRKLRVNSN
AEMATLSMEYGLLEP
>Dde_1546 transcriptional regulator, IclR family
MAEEPAVTDRRPDPLFVHSLQRALMVLEAFDSTARNLSLSDLSRKTGLNK
SAVQRFLFTWEALGYLEKDTDTKRYSLSPKVMSLSYHYLKDKRLVEIATP
VLLEMRKRTGCASYLGILYEQDVMYLIRLPQRFILLESTLAGRRVPAFCG
GRALLSCLPQNSARSLIEQSIRTQLTPFTITDSEANMRAVRQAAELGYAV
SRQEQLIGEVSVSAPVLSSGGTLLAAVYISADNNEWDDSRIAAELAPVVL
KAASDIGRQF
>Dde_0161 response regulator receiver domain protein (CheY-like)
MTIRCIVVDDEPPARDEMVYLLSRFADVQVAGTADSAEQALALIAQQKPD
LVFLDIQMYGHNGFYVVEQLLDYPEPPLVVFATAYDQYAIRAFDENAVDY
LLKPIEEKRLAKSLDRVREALAARTEQEQDSRTQTAPPLHDDIRLGRLLE
QMGRRTVLTRVAVERGGRIVLLQPDEVFFIQAQGKRIWAHTTEGMAPCHG
VTNLQKLEEKLAGHDFFRATRGELINMQHVREFSPWMHGKYNIVMSDPGQ
TEITVNRSRVKDFKERLGLV
>Dde_3137 transcriptional regulator, AraC family
MSGMVKLLDEIAGVDGGVVESRLPGVRFFKETRHVARRPMLYNPGICIVV
SGHKVAYVGGQTFRYDVDNYLVTSVAMPFECESFPSQENPLLGMFIDIDI
GQLNNLISMMERQDNPSVAVSNGRQLAIGPSAMDADMKDAAVKLVKALQS
EQEARILGPGLVREVYYRALCGNQAPVLYSLVRGSGSFSQVARIIHMMEG
SYSEKFDIQQLADSVHMSVSAFHKAFKDITADSPLQYLKKIRLSRARDLI
VQQGMKAYLAADEVGYESPSQFSREFKRYFGRSPAELMRDVRSS
>Dde_1270 putative transcriptional regulator, Fis family
MRKVIQHIESIFDVLSDGIYITDKSGKTLFVNKRYEQLTGLQMKDIKGLN
VSTLLEEGVFDIILNPEIVRTRRPATSVQNVRQSKKVILRGYPVFDDEGE
VCLVVTFARDITMITQFRDQIAQQRELIDSFNERMEHMAQEQTRHPRPVF
ESHAMKRVLELLQRVASTDATMLILGETGVGKDVIARLAHEYSPRDGKLF
MKVDCGSIAENLIESELFGYVPGAFSGASSKGKPGYFEIADGGTVFLDEI
GELPLPMQAKLLRVLQDREVMRVGATQPKEVNVRIIAATNRNLAKEVEEG
RFRSDLFYRLNVAVLRLPPLRERSDDILPLADTFLDRFNAKYHRTMTMTR
ATRHALGNYGWPGNVREMQNLIQSLVVTCDGRSIRPEHLPPHITRAGKST
PYTPPAPEDERPLKEIMADIEREILQEALKRHGSVCKVASMYKISRTTLF
RKLRDVQDGTHEDA
>Dde_0669 transcriptional regulator, MarR family
MPHTIPHKAKPRPLLRRPRQRAVARPAQACPAGACPCAEAPLYRSRRTSI
GRAIALVARKTRMRLTETLAQLDLGAGQYPFVIALLRYGDCSQEQLAELT
AMDKSTTARALKALEQKGFITRKPACDNRRMNIVHATSKAARLEHEIHRR
LNAVNSELAAGLSARERRLLLRLLHILEDNTQAFSTL
>Dde_1723 response regulator receiver (CheY-like) modulated serine phosphatase
MPDSSSILIVDDSRSVRNALASLLRKSHAIEQAENGEQALASYARNRPDI
ILLDLNMPGMNGLEVLRTIREGFGDDETYILILTADDSSGTKTRGLSLGA
NDFLSKPFDIAELRARVGVAERQRKLTRQLVDYARRIQNEIDLVASLQSK
LLPTATPYLQGIHIESLYEPSGEASGDYYDFFPVQEGRKIRTVVADVSGH
GARAAFIMSIVRTVFRITQSRYMPLDETVALLENHLMDAIGDEEDFVTVF
TADVDFTDERLDYINAGHCPGILRQPSQEPQLLTGSMPLLGFLKAPVKMR
SIPFTKGSGLLLFTDGFYDWKKQDGTLFSLEDFIAAATGCLGRDEHVLKK
ITTTLEEAGGGMPAYRDDLTALWIFNETTAS
>Dde_3352 conserved hypothetical protein
MSGGKMADLREAARNLGKGGAVFSNIMLYQALGGVDQPAKDRIRRRAVSL
VTSGELIRVGRGQYRYNAKAAPARSGELITRMWRAVKSAKSGFSTQDLAR
ISGAGYSHALRYMRHLENDGYLRTCGRNGNTILYRATEKARNQVHAYQPP
RQLRDPFENEKEQVHELVSLFMLRDLYQPAVRKSVVACCKNILARFERQE
ESDE
>Dde_3474 chromosome initiation inhibitor
MLEYRLIEALAMVVREGGFEKAARVLHVTQSAVSQRIRQLEAAAGTALVT
RAAPVTPTEAGRRLLRHYHQVSMLEADLERDMAARFSAELLGEGGAAHGR
APAYRQLSVAVNADSLATWFLEAVDAVAEQEKLLLDVLVDDQDRTHDLLR
NGEVVGCVSTRATPFHGCSMQRLGSMEYLVCAAPDFAAEHGLRVGADGRA
ATAADLLRAPAVLYNRVDGVHDTMLQTLYGIAPDTPYPRHYVPSSEAFVK
MVAAGFGWGCVPHLQAEPLLAGGELVDLAPGWALPVALHWHWWDLGTGLF
KRMAAVLSDHAALVLR
>Dde_3114 metal dependent phosphohydrolase
MSPAHIATSADDELIFAEEEPVQESAAADAHWTLLIVDDEEDVHTTTRLV
LEDFTFDGIPLRCISAYTGAQAMEILRTEKDIAVVLLDVVMESNHAGLHV
ARAIREELDNRLVRIILRTGQPGQAPERKVIISYDINDYKHKAELTSQRL
FTTVYTALRSYRDLRVIEQNRQGLRHIIDASADLFRIRSIRQLAQGVLTQ
LSSLYGLFSGSVYVQTSGFTATSENHESLQFIAATGKYDALQTDEGCPQL
SSDVRAAVQQAVEEKRSIFNGRDYVGYFPARNGREHLIYLEGLSGVTPPD
ENLLQVFTNNVAVAFDNVYLNKEIINTQKEVILRLGDVVESRSKETAHHV
RRVAEFTRLLARAAGLGEETAELYLHASPMHDVGKIGIPDAILLKPGRLT
DEEREVMKTHTTIGYHILNTSERPIMQAAAIIAHEHHERWDGTGYPQGLK
GDGIHIAGRITCLADIFDALSSKRVYKEAWPQEKVLDYIQAEKGRIFDPA
LVDALFANMEEIDRIRDRYQDAH
>Dde_3721 putative transcriptional regulator, ArsR family
MDNPFTERQAAIFKALGHPARLCMVDALTAGARCVCELQELVGSDMSTVS
KHLSVLKKTGIVQDERRGNNIYYSIALPCVTGFLQCTRQAVERAGISPAP
EQTGRTDAAD
>Dde_0152 DEAD/DEAH box helicase-like
MESKEAALRQKKGVSACNGRNIRLCRSVVITRCRKTHGKETYKIMVEKLL
FADLPLSKEVLRAIQDMGFEEASPIQTMSIPHILAGKDVVGQAQTGTGKT
AAFGIPILERIDPRDKATQAVVLCPTRELAIQVAEEVTTLARHKRGISVV
PVYGGQPIERQVRALRRGAQVIVGTPGRVMDHLDRGTMDINTVKMVVLDE
ADEMLDMGFRDDIEFILGKMEQEVQTVFFSATMPRAILDMAQRYLKEPEF
LKVTQKLLTVPSIEQIYFEVRPFQKLESLCRVLDVYNPKLTIVFCSTKVG
VDELATNLQARGYDADGLHGNLNQAQRDRVMNRFRKGNIDILVATDVAAR
GIDVENVEAVVNYDIPNDVESYVHRIGRTGRAGRAGRAFTFVSGREFYKL
RDIKRFTKAQIAQRQVPSLSEVENAKFTQMLNEVTNQIRTGGLERYIELV
EGIIGEEFTSVEAAAALLRMMMHRNAGDAVTEEQKFGDTGAQPGMVRLFF
NVGRKARVTARDFVGAIAGETGLPGRMIGSIDIYDRFTFVEVPNEFAAEV
LAVMNGNQIRGNKLAVEPASRR
>Dde_2991 NusG antitermination factor
MTEPTTPQTKARWYIVHTYSGFEQRVEQTIRQMIRTGEAQDLIEEVVVPT
EKVIELVKGEKRTSTRKFYPGYIMVKMIMTDFSWHLVQNINRVTGFVGGK
NRPTPMRDSEAERILAMMESRQEQPRPKFNFERGDDVRVIDGPFGGFNGV
VEDVNYDKGKLRVSVSIFGRQTPVELDFVQVNKG
>Dde_2949 DNA-binding protein, putative
MSTFDEVFERIKMATNTRTQVELAEVLDIRQSSISDAKRRNSVPSDWYMK
LFEKFGLNPDWLKMGSGPMYLRTEQGYQPVDGPAAGQVFEDPAKYGDPDA
KSTVVTVYAMHDDQAAEEELPHKSLSKLSVPQSFAGAAMQVFRVDATSME
PLIAKGAFVCLDTQQKSIISGELYGVFIPYEGIAIRRVFLDAQNQRFILR
SENPALPEQYLPLGKHHSSIVGRVSWVLQKL
>Dde_0749 regulatory protein GntR, HTH
MSRNSVRFVPEGTTKQCVRNEIANRLRELIACGELRRGDKLPAERHLAEV
LGVSRHSVREAIRSLEQQGVLASRRGDGTYVLDDRQELLYGPLGMAVEQR
NIQEVLEFRKLLEPQIASLAARNISGTDLALLREKLNEQKAVIAQGGSGS
ALDAEFHLLIAKATGNRVLYEVLVRIHDIVSESRDFTLQTEERRDWAVMT
HERVLAALARRDPEAAFQEMHSHIDYVEKIALEWID
>Dde_1244 regulatory protein GntR, HTH
MVAESAPRTSVAAEVAEKIRRMIDEGQMLPGERLPAERKLAGLFNVSRAS
VREGIKLLAESGRLLSRQGSGTYVRERCAENSGRTLVQTVLNGGYSLQDV
IAVRLLLEPEIAALAARNGGAAVAARLEAVLAEQEIAIGSKDYSGSADVL
FHQILAEAAANPVLLEMAAALYEGFAKSREDGVQSFERQQASLKAHREIV
AAVRAGDSRKAERAMHSHLTDVARRICSACR
>Dde_2002 putative transcriptional regulator, TetR family
MTMTKKDALLLAAKELFGEYGYSETTFKKISERAGVALGLLTHHYGNKEK
LFLAAGLDVLDRFIVYLQDACAKGNNGYESVMNFCRAYLDFSIDKNEHFM
VLVRCSPYSDMKTKTDRDIMYEKFNQVPRELEYHVRRGIEDGSLKSLPAY
ETTTVLTCNLVGSIRTKLLTPYAPPSLYDDVLEFISRSIKA
>Dde_1026 heat-inducible transcription repressor HrcA
MNLAHREAEILATIIERYIATAAPVGSVSVARRSGLRLSAASMRNTMAEL
TDKGYLSQPHASAGRIPTARGFRLYLDALLKTRPLSRDERSAILNELTTH
GLEISDMLREASRMLSAHSRQVAVVLAPSRDEVRWHTIDFVKISDTLVLT
VLVLEGGLVRNHVLSVETPVTQDELVRYGNYLNEYCKGLTLSQARVRVAR
ELQAAEAHLEALYFRALGLARLAFEHMDDDREVFVNGTLNMLDQAEFTDH
TRIRDMLALLEERNSILELLDKAILSDSVTVSFGQEDENEGTAPLGCSVV
SAPYGGLQQASPAGVVSVLGPLRMNYRQVLPVVDCISKTLTTLLQDRFGT
EHSD
>Dde_3127 putative transcriptional regulator, TetR family
MASSKHLILENARRLFSENGFKGTTIAQIAKTSNVTDAAIYRHYRSKQQI
FDSIINDFFDEFSGLMDSIHERQKSGYCLIETLILDLDAFLDERVVELKV
IMNTYTIMPSARQIMERMYALLGLTLERCLEKGMRDGTVRDDLDITPTAS
LIAVMLMGMSRRQLYWPETPNLAQEAVTFCQRSIRSL
>Dde_0263 metal dependent phosphohydrolase
MRHPPHAASPLCHHSFTHTAHGPLTTCYNHVRPPRRGHHSGGNMADSCSG
YTEKHALPAGILRAWPVISAPVRQRLQLPLAGAIYFVAVLCGLQSGIACG
LPPSIHPAAGFGFAMLTLRGGTMLPVLMLADFCAGMTALPPLPALALAAG
NTAGIALAWQLMQAKAPQVRIFDLPRHAVLFICAAPLVQSVTAATAGTFS
LTLAGIVHHSQASTVWGAWTLAQGAGFILSGMAALAWTRPAPPDAATPDR
RRLLKASGAALLLCLLVLGPHPLPDSLRYLLLFIIIPATAWAGFKLPPAH
LSSLLLAGGTLGAWLTHADHGVLSTLPAPLPFVLLQGAMLLLSAMALMTQ
VLATTNRHMRRSLSTTQDAALFSLASLAETRDNETGAHIMRTQAYVRVLA
RQLRTHVRFRSVLTPEGIEQLCKSAPLHDIGKVGVPDAILRKQGPLTPQE
MDQIKLHTVYGRDALRHASMRLGGSSFLQMAEELVHTHHECWDGTGYPQQ
LTGEQIPVAGRLMALADVYDALISRRCYKKPVPHHQAREIILKGRGTRFD
PAVVDAFLRAEHDFLAIAAAFRDEPDTCT
>Dde_2512 GreA/GreB family elongation factor
MTFLLSQTGVTISLSGNIFCERGLTSGELCSTPQVANTCFGQCRTASRPM
GRVAFFLIVVGKKLSRNVKESNMSSIPISVEGFELVKRDLERLKQERPAV
IQAIKEAREEGDLSENAGYDAARERQGMLEARIGNIESRMARFNVIDMRT
LGGERVTYGATIELEDLETGEMRVYTLVGPDETDYVKGSISVLSPVAKAV
LGKEEGDEVVVDAPRGKIHYEIVSVSFNGPVITLE
>Dde_2924 ERF family protein
MENHILTCSESITELAKAMLQVQQRLVPVMKDTTNPFVGSRYASLNSVME
ACREALNANGIWVVQYPVQVAPPIYEGAGCPQNLLGLVTKLVHAESGQWQ
SSLMVMPLPKADPQGYGSALTYARRYGLTTLVGLVTEVDDDAEGAMSRNQ
QPRSRAKSAPQSGVSWGETRSAQASQAGNNSKKSGRGASTGAAKKAVEIG
STDALQNLLSAQNSLPRIDGVSYQTIRAQDGRFCITASGDTRSKSTLLKE
AGFRWDATRKLWWRYAQLQDNAA
>Dde_1928 sigma-24 (FecI-like)
MVSQNSYDGIDKYAADLIRHKARQLVGKAGFTEDDRPDLEQELMIDLLQR
MRHFNPAKAKKTTFMARIVERHISTILEARFAQCRDWRLCQTSLNEPLDN
GEGDTTERIDFLDGEGSLGGGTRETRERLAHEIRMDLDRAIASLPEELRD
LCVRLHDSTMAEIAREMGIPRTTLYDRLSKLREAFSEAGLTDYL
>Dde_2349 putative transcriptional regulator, TetR family
MEYVGRTGPLRSGNPPCGSAKNLNYYRRTPWKTELLLPVPAKIPAKWPPC
PPQLWPPAPVKTAARWPRFLRTLPANNPPAPIIRRPSGRPFLCPSKSATV
RKRPHFSPPVAHGICSGSFRLRHPCLPPVLYRVSRGCCVLHLRNMTALRR
HDLRAAVIDKKTYQMVCFAMAIAHRKKKEPEKVRRALLDCAAAIAVSKGF
SGLTVQAVADGAGVTKGGFFHHFPSKQALMDEVCAELLRSIDALVDEYMA
QEPQGYGAFTRAYVQAILTPAEKSSPWVSLSVALVADPQLRSLWTGWLQQ
RLNRHRQTDNHAALAFARYAADGIWLEDLMLGKKRSAGETARLQKQLLAL
IDRKQEA
>Dde_2129 transcriptional regulator, CarD family
MFVPDQLVVYPAQGVGKVERLESQVVGGAEAEFYIVRILSNNVTLMVPVK
NAVNVGLRALCSAEEGQKILDSLQDRSDFTGYTGQNWNRRYREYSEKLKS
GSLEDVAYVLKELLLIGKDKELSFGERRLLEQSMGLITLELAHALDTTQE
DVKARIEVFFEDVLHPEENPE
>Dde_3426 putative transcriptional regulator
MEAKTPFSQEDLNEIFKISPADPERVISRESSSLEFKESFGWASLPKYLK
TSAAYANAKGGYIVFGIANKPHRLCGLSGANLKLFEDIDPEKMSRNFNEH
FAPEIEWTIQEYELQGKVFGLLYIHEAKDKPVVCTKDAGKDLKESDIYYR
YRGRSERIKYPELRAILEAKRETEQRLWMQHLENIARIGVREAGIFDLHT
GSVTGSGGSFLIDESLLSQLFFIKEGEFSEVKGKPALKLIGHVEPLAGSV
IGTVKKQIVKTKGIRTADIVLSTLNQDNVPEPDEYIKQICFESTAFLPVY
YFIKKSGMTLDKTVEVLEGVVSRSATRGKLIERLKSGNTQKLAIPNGSTA
AATKKRKYAEALRSKKVNAGLTGKELEYCLQAIRGLTADEVKSNSKYIRE
LLRNWFNKHYASAKGPLADNLRRAICWVDEALNMGDCK
>Dde_2834 conserved hypothetical transcriptional regulator, LysR family
MDISSVNLNLLVALKALLDEGNVTRAAERLHITQSGMSKNLAQLRELFDD
PLLVRSGNALVLTERARELEGPLEMVLGNVHALFEAQRFDPATCRRSFTL
AVTDYVAQYILPDALGAILAAAPGIDIQAIGWEPDSMRALAEGKIDMATC
LTEGVPASVEQLRVGEDRFACLMRAGHPLAAAGAMRLDRYVQADHAAITI
GGDKVRIIDRVLGKLGHSRNIRLRVPFYASAVEIVSRTDLLLTLPAHVAR
NVIQARNPSEPALAWAPLPFAVDSFEYSIIWHARFHGDPGHRWVREMLFA
QMQSSLFAH
>Dde_2579 transcriptional regulator, GntR family
MKTPLRTDNVVPLRCGMFPAQYKPPIRRHAGCQPFGSAPCFRLRHRAWPA
SLRRGRPAAAQCKNSVSDKIPSYTVALMTKPDYTLRSVFLYSYPQHAGDS
AMHAGSSGNARAPFIFSLLKGTIALSGIVKQTYSEQVVEYIKDRILKGEL
SPGDPVKEALIAQKLAISRAPVREALQILAREGLIVYEPQKGKRITALTA
KEIRDSYFTGGVLEAAAVAAALPLYTAQDIDLMHRTVNRMKEVADTGAPL
DSMTGLDNIFHETLFSRVDNPLLVELCRRSCQGISKFLLYRHWIKLFSAQ
EVYLRHKAVFDAVASGDPALTEKAIRHHYTESGERMSNYGVDVFDG
>Dde_1980 transcriptional regulator, putative
MEKLSFDTFFRRVKESTEINTQQALARALGVNRSAVSQAKQREKVPEKWV
LKIARMFALSPDWLESGSGSHALRTAASDMADGIFIPVPKVEAKLSAGGG
SLEVGATATGEHLFHSTWLRRKGNPADMVLMDVVGDSMEPEIFAGDTVLV
DQGNQTLRNGAIFAMGVDDSVLVKRVQSAPEGLVLLSENPSYSPVLLQGD
EIETVRVIGKVIWISREYR
>Dde_3360 DNA-binding protein
MNATLCRTLKKMFDEGFRQYAGEIDSQVYEQLGCKDASRAYWICRWPILH
CLGCNRRCTPKAPTGFQVPLVTVSPSTNKDFSLTPEELVAAKALLRIDEA
AYCLNVSERTVRRLVDEGVLVRHVRQPVRVTAESVREEMMRVDI
>Dde_0407 transcriptional regulator, putative
MSGYSHEERELLSRIAWAYHVNGMTQAEVADWLGVSRARVVRLLQVCRDE
GFVQIIVNTDRAVCNELERQLEAAFGLRRAIVIPAPANPRQLNHNLGQAA
AHYLSGALRDGNSLGLGWGTTVAAAASSVPVEPAQGLTVVSMYGGLPYSI
VVNPYEIVTTFSRRLKASQTYYIAAPMFAPSPESCRLLKSQELFRSVYAR
AIQVDIALIGLGELAVNATNIVLGAITREDFRSLVDAGAVGEVFGAFVDA
AGQPVDHPKNHCFMGPTLEEVRSIPLRIAAAGGPSKTAILRAALVGGFAD
VLVTDETTAGTLLMAETGGES
>Dde_2633 transcriptional regulator, MerR family
MSGTVYRIGEAARLLNLKTYVLRFWETEFPQLVPERAESGQRLYTEENIA
LLRQIRYMLHEQGLTIEGARKVLAEQQSSRKQQAEPQTRAPAAPVAENGI
VREVIDELQVLRTMLHAAGTDRM
>Dde_1741 Prophage antirepressor-like
MGEISTLTLNGMADARTIVDENGELWFVAMDVCKHLGLKPRDSVRYLDDD
MKKHLPRTALGMKPGKPLLIINEPGLYTLIFQSRKPEAMAFQDWVCEEVL
PSIRKHGAYFMMKPTDTDESIIQKAMQIIELAREDDGIECPDILRELADK
LEAALQGQFMPTFMASTCKAYSNDTSDLGPIIDV
>Dde_0900 sigma-24 (FecI-like)
MFYRNSYDGIDGYAADLIRHKARQLVGKAGLTEDDRQDLEQELMIDLLGR
MKHFNPAKGKKTTFMTRIVERRISTILEARFAQCRDWRKCTASLNDPIPG
GDNDSAERIEQVCSDGQMGHHGRDTNEQRQNDIRFDLERVIAALPEDLQE
LCEKLQSSNMAEIAREMGVPRSTLYGKLTKLRDAFRDGGLEEYL
>Dde_2977 transcriptional regulator, MarR family
MTASSDLNHAIVEFYEKLSSWEHCVVRDKGLTLPQMHTLEILGIHRAMRM
KELASKMGVTTGTLTVLVDRLEERGLVQRSPHMTDRRSIMVELTDSGRTE
FEEHDRLHIRLTEEICAGLSDEDKDALLRCLLSMNRMF
>Dde_1018 response regulator receiver domain protein (CheY-like)
MRILVVDDDTVTVSMLEALLQEEGHEVVTAFDGRDVLGCLQGNSLDLVIT
DIFMPEQDGLVTIARLREEFPQLRVVAISGGASALGKVDALRAAQLMGAD
AVLAKPLQAEQVLRVVNAVSSAEKGTSFSGI
>Dde_2998 DNA-directed RNA polymerase., Acetylornithine deacetylase
MTLDDLFSMRGTAAGQTNIRNLKAMQISIASPESIREWSYGEVKKPETIN
YRTFKPERDGLFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIAS
KVRRERMGHIELAAPVAHIWFLKTLPSKIGTLLDMTMADLEKVLYFDSYI
VLDPGSTSLAKLQVISEDQYLQIIDHYGEDALVVGMGAEAIRSLLEELNL
EALRAELREESQSTRSQTKKKKLTKRLKIVEAFLESDNKPEWMVMEVVPV
IPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRN
EKRMLQESVDALFDNGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLG
KRVDYSGRSVIVVGPKLKLHQCGLPKKMALELFKPFIYSKLEERGLASTI
KSAKKMVEREELVVWDILEEVVREYPILLNRAPTLHRLGIQAFEPLLVEG
KAIQLHPLVCAAYNADFDGDQMAVHVPLSVEAQIECRVLMMSTNNILSPA
NGTPVIVPSQDIVLGLYYMTVERSFEKGEGMAFCAPWEVVAAYDAGSISL
HARIKVRMPDGRLLNTTPGRIMVGEVLPEGVHFDLVNTVLTKKNIARLVG
NAYRDAGTKATVLLCDRLKDIGYEFATRAGVTIGVKDMTIPQSKKGILAD
SQAEVDNIERQYRDGIITRTEKYNKVVDVWTKATQDISQEMIKEISYDVM
RDEKTGKEELNQSFNPIFMMSNSGARGNQDQMRQLAGMRGLMAKPSGEII
ETPITSCFREGLSVLQYFTSTHGARKGLADTALKTANSGYLTRRLVDVVQ
DVIISEHDCGTVDGLEVGHLIKGGDIKMRLAERVLGRVTLYPVTDPETTE
VLFPANTLIDENVAKKLDEAGINSLHIRSALTCRSDRGVCAMCYGRDLAR
GHVVNIGETVGIIAAQSIGEPGTQLTMRTFHIGGTASREIERSNIQAQYT
GRAVLYRVKSVRNKDGQHMVMGKSGQVGIVDEQGREREKYVLPSGAKLHV
EEGQEVKKGQLLAEWDPFNEPFVSEVDGLVKFTDIIEGKTVQEKADEATQ
MTTQTIIEYRTTNFRPAVALCDADGVVKTRPESNIPASYSLPVGAILMVR
DGQEITAGDIIARKPRESSKTKDIVGGLPRVAELFEVRKPKDMAVVSQID
GIVTFAGETKGKRKLVVTPETGDEKEYLVPKGKHITVTDGDFVEAGEMLT
EGHPELHDILGVKGEKYLANYLVEEIQDVYRFQGVGIDDKHIEVIVRQML
KKVTVLDPGQTSFLVGEQVDKAEFRIENQKAIEEGRTPATAEPLVLGITQ
ASLTTSSFISAASFQETTKVLTEASLRGKNDHLRGLKENVIVGRLIPAGT
GYREYVHSDISVPEQKERPDRFLEELVGAPQPVVED
>Dde_1396 transcriptional regulator, Fis family
MWQDHFIAKASRRLGIPEPRLPYRHIRRLAAYHWPGNVRELQNIMERAVI
MADGGVISAEALPEALPRRREEAQPGALTRNEYGWQTEAPDRRVTVIREE
QWAHMQRENIRAALEACNGRIHGPDGAAHLLGVRPTTLQSRIKKFGIGRQ
DV
>Dde_0747 putative transcriptional regulator, ArsR family
MRDDPPICRHHCEHTDTVNKVRAAMAPEEELSALAELFKVLGDRTRARIL
EALAVSELCVCDLAAILCLSQSAVSHQLRLLRATKLVRYRKEGKNVFYSL
DDEHVRQLFRQALEHVQEER
>Dde_2052 Sigma-70 factor
MGNIKEIQQIKTLIAKGKVAGFLTFEEVNKALPAEVNTPEQIEEIIGIFD
QLDIAIVDSEKDGKKISVSPAEADDEGGDGGLELTDEDDPADYSSRSTDP
VRMYLREMGAVPLLDRDGEVNIAKKIETGEQDVLYALVEVPIAVEELISV
GEDLKENRIKLKDVVKTIEEDDPSEDEMNQRQRVILLLDEIQSTFKKKRK
VYQRLDECCTLERRVYGIQKEIIAYKEEIVSRLRDIKLEKTLIDRIIETV
EDYVRQMHNCQRDLSAYILSTGKTQTEMRELFRQLDDREINPVVAADSLN
LTVEELFSFKEMIMGKMEILNRLQEKCCHNVTDLEEVLWRIKRGNSHAMR
AKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRG
YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQEL
GRDPTPEEIAERMDYPIDKVKKVLKIAKEPISLETPIGDEEDSSLGDFIE
DKKAVAPAEEVVNTKLSEQIAAVLADLTPREEQVLRKRFGINEKSDHTLE
EVGKLFNVTRERIRQIEAKALRKLRHPVRSQTLRSYYES
>Dde_2598 ribonuclease R
MGKKKRKQAESLPVRSGDLLQLFKDEKRPLKLQDFFRLLGLSKSYRAALE
EALEDLRAKGRILQLRGGSWGLAEQLKMVTGTLEVQRSGVGFVLPEDKRR
ADIFISPAQMGQAWHGDKVMVALLSERAGRKPEGRIVRVLERGHEIVPAR
VVKLMGKAGVLAQPADTRLRFSMLVSRGALDGKPRKNELLLVEPGERLEP
NLWSGVAVESLGVEEDVSTQEVLVKLNHNVPTEFPQEVLDQAAALPDQPS
EDDFAGRVDLRHVDFVTIDGAKARDFDDAVYVEEQHDGWRLWVAIADVSH
YVQPRTALDEEALTRANSYYFPQSVEPMFPEALSNGLCSLNPRVPRLAMV
AEVYFYADGTPGKSRFYPAVIESKARLTYGQVNRAVLQKDPHERKLLGPV
LPMLEQAEQLARVLKRRRRDRGSLDFDLPEPEIIFNIYGETVDIGRRVRH
FGHQMIEEFMIAANEAVARFLTEKETGLLYRVHPAPDIDKLENFFKLMRG
TALAHKVPPQAGAAQLQTLLHAAEGTEQEFLVNRLALRTMMQARYTPDLE
GHFGLASECYCHFTSPIRRYADLVVHRALKHALGLAGATPPPAPRTLLRI
GDQLNIRERAGMEAEREILKRITVLYLRDRVGEEFSGVISGVSDFGFWVE
LGEVMAEGLVRLSLLHDDYYEFIPERQELMGERTGRTFRLGQSVRVLLSG
INVPRLEVDLELLEHEDSRVPQRKEGNRSAERDRRRGGSGDRKGMTVAAQ
ARKAEARLRAQGGAPQEHEDFQAPAAQSGDADVLVRAEDGSLIVADDADD
RPAASGKPARGRSRRSSGGRTGKKTAGASGNSAGGKNAKRGARPAAAGAK
KKKPAARPEKAGGTKKKTA
>Dde_0950 hypothetical protein
MAYHSIQGLAHGRLDLLNQLRTFLVTTTGWTLHDDQSADPQPYFVFKSHG
ESGAEDVYLQFRISTTSGRIHVAAFQYWDSATHTGVNEASHTSYTYLRVE
DSADFIFWLFADLDHVFVVTKLVSTYYGHYSGLLKRFWSGAVALTQAAVT
AGSGVVLQVNDATVVTPGQDYVIKDDAGIERVRVSAIDNAATPNTITVET
LVRDYASGAKIGEDPQPVVNSYYNAPGTFYAVNKFDGWTSASGQQGRCGA
ANGGLQGETDPETRYGTTILFPWLASMSGSAVYQELRGELIEIFSVGGGN
VASEDTIQIGTDSYRVFNLTTGGWCAVKE
>Dde_2822 response regulator receiver domain protein (CheY-like)
MPRLTSLILHPDAAVRHSLRAHVSQVPFLRVVGEAVCANEAQELLNAIHY
GAVFCGVDLQQPEQGLEFAQRLMGRRHRPALVFIASDETHAFAGFELDAT
DYLIWPCTAQRFSRTIARLRQFCSHFKLAPDPETRWNEKAAPAPAGTAGH
GLQADTTAEDDATVQVPLADDEQDGFLDALKQAWDYNSTYRPVEIEKLAI
TYEGKTLLLPYDEIVFVEAYEDYTYVHTAEQKYLTSYRLKILEGKLKPHR
FFRVHRKYLVNLNMVTEIASLPGSSFMLRTAGRTRIELPISRRRIGELKQ
VLGL
>Dde_0294 putative transcriptional acitvator, Baf
MPSVFLLFDIGNTNVKIGIADHDGVVASYVLPTDTHQTGDSLGLRLADVV
RHAGFAPGDVTACVASSVVPSFNPLMRQACGRYFDRRLLLAPEDIAIPLE
NRYERPQEVGADRLVAAFAARRLWPAPRSIVSVDYGTATTFDCVQGEAYL
GGLICPGVHSAAGALAAGTARLPRISLDVREDLPVVGRSTSMSLNHGFVF
GFASMTEGLCHRLSAVLEAPMQVVATGGFASAIARVSNCFDHVRPDLLLE
GLRILYMESGIKG
>Dde_0779 DEAD/DEAH box helicase-like
MTTPYHAKYFAHDLTIQKPLDGVERLSRSLFDACVDLNPHQIDAALFAFR
SPLSKGVILADEVGLGKTIEAGLLLCQYWAERKRNIIIVCPASVVIDARA
YRLEKKNGNITPFDQNCVIITSLHYAARMKEELRLTKWDLVVIDEAHKLR
NAYRPSNKMGQGLRWAFEDCFKVLLTATPLQNSLLELYGLSTFIDDYMFG
DISSFRSQFVNSGGDLPGLRDRMAPFCKRTLRKDVLEYIQYTERKPIAFR
FRSTDEEQRLYDAVTEFLKREETYSFPSQQRQLITLIMRKLLASSSQALL
GTLQTMRKRLLDLKEGIEAERSLAEELIDLEEIEDDLLEEDELYDPLLSE
DAEAPDDGKLDLEKLAEEITELDKYITWAESIRVDSKSKTLLKGLETGFA
EMQKMGARRRALIFTESRRTQDYLKSFLEANGYANKVIAFNGTNTAQETR
AIYDSWLDKNQGTGRISGSRPIDVRTALVEHFRDNAQIMIATEAAAEGVN
LQFCSLIVNYDLPWNPQRIEQRIGRCHRYGQKHDVVVVNFLNERNAADQR
VYELLEHKFNLFNGVFGASDAVLGSIESGVDFEKRILGIYQSCRTTEEIE
KAFAALQAELEEQINTKMEKTKQLLLDNFDEDVHTRLKVQLDDAHRQNGM
PRMLGRKIKGYIMEV
>Dde_1151 metal dependent phosphohydrolase
MEQESAALALGIAGQAAREGSRTEAAGSGLLFTRGDAGCGDVRLTVHQLA
ESLGNAIDARDPHTHSHSDEVAETARVTALAMGCSFEQAEMLHIAGHLHD
IGKIGIPDNILRKASPLDDEEWEIMRSHPLIGANIIRPVALLAESGGVVD
VVLHHHERWDGKGYPHGLAGRDIPLGARIIAVADTLSAMLQTRPYREGRS
FGAAVAEIVRCSGSQFDPAVVEAFVASLDRVKHAWPAGGQAPAFMPPR
>Dde_1569 metal dependent phosphohydrolase
MIRIQDILDTIAEYRQDADIALIQKAYVFSAAAHAGQTRLSGEPYLMHPL
AVAHSLAKMRLDEASIAAGLLHDTVEDTSTGIEEIDSLFGEEVADIVDGV
TKISQMTFESKEEAQAENIRKMVLAMAEDIRVLIVKLADRLHNMSTLDFQ
KPHKQKLIAQETMDIYAPLANRLGLHRIKLQLEDLSLRYLRPDVWSQLSD
WLEKKRVADSDYIDNVISLLRGMLDENDIPGKVKGRIKHINSIYRKMVHQ
NLALDEVPDVIAFRVIVDDVKNCYAMLGLVHAAWKPIHGRFKDYISMPKA
NMYQSLHTTVVGPGGERIEIQIRTEEMDRMAEHGVASHWLYKEGQRVKSK
DVRQFAWLREMLDWQKMESDSREFMRSLKFDLFKEEVYVFTPRGEVKELP
EGASPIDFAYLIHTKVGDHCSGAKVNGKLVPLSTKLHNGDTVEIITDANR
HPSRDWLRFVKTAKARTRINNYIRTEERSRSIALGREMLEKQGRRMGLNV
PKLLKEGGLMPVAEEFSYREVEELLSAVGYARLTPRKVLRKLLPKEEEPA
RQPEVKAPEPQKSRRESDSVSIKGVDDVLVRFGKCCNPVPGDAIVGYISR
GRGVTVHTSDCVNVQAMEPERLISVFWDGTEGKPYPARIHMLCHNEIGGF
AKITTLLAEEQVNIDACHMRSNVDGRSELDVTVEVRDVAHLYRTIDRLRH
LDAVIEVTRHSSHSE
>Dde_0893 LexA repressor
MGRNREDDITPLQQETLDEICRYVSAKGYPPTVKEMSETFGISHASVHDR
INQLVRKGYLKREEGKARGLTVTKHPQTNAVALVAVPIVGTVAAGHPIFA
HENITGEVLVEASVVGSGKCFALYTQGDSMIDAGINDGDLIIVRRQPIAE
DGDIVIALLDDEATVKRLKIDNELIELVPENPRLKPIRVKPEDELRILGK
VVGRKRI
>Dde_0885 conserved hypothetical protein
MEDKVLKAMQEAGKPVRPGEVAEKLGVDSKEVSKAIKNLKDSGKIHSPKR
CYYAPVQ
>Dde_2997 DNA-directed RNA polymerase, beta subunit
MGQLTKKFGKIEVTLPIPHLLNLQVDSYKKFLQEGAAALAPDEGLEGVFR
SVFPIEDFNRTASLEYVSYEIGEPKYDQAECISKGLTYEAPIRIKVRLVV
YDVDEDSENRTIRDIKEQDIYFGTLPLMTEKGTFIINGTERVIVNQLQRS
PGIIFEHDAGKTHSSRKVLYSCRVIPMRGSWLDFDYDHKDILYVRIDRRR
KMPATILFKAMGMSRSDILEYFYKKEYYTLEDDGRLMWELDKDLYRKDVA
YADVADGEGKVIAKAGKPYTKRSWRLMLEAGIPAVEVAPDYIAGMFLAED
IVDEATGEVLAEAADEITLDLIDRLRECSIKRVPVLHTKGSDTSSSIRDT
LLLDKTADQEQARVEIYRRLRPSSPPTPEIASTFFENLFRNPDYYDLSPV
GRYKLNQRLGLTTTQERVLTDEDILTAIRVLNHLKDTHGPADDIDHLGNR
RVRPVGELVENQYRIGLVRMERAIKERMSLQEVSTLMPHDLINPKPVQAV
LKEFFGTSQLSQFMDQTNALSEVTHKRRLSALGPGGLTRERAGFEVRDVH
TSHYGRICPIETPEGPNIGLIVSLTTYAKVNDFGFIETPYRVVRDGQVTD
EVKYLDASSEHGEVVAQANARLDGDHRFVDEFVTTRVRGDVIMSPREEVT
LMDISPSQMVSISAALIPFLEHDDANRALMGSNMQRQAVPLLRSTKPIVG
TGMEADVARDSGACIIAEADGVVRYADADRIVVSYEGDLYPRTGGVRSYD
LQKYHKSNQSSCFGQKPLVSRGQVIRKGDVLADGPGIEDGELALGKNLVV
AFMPWCGYNFEDSILISERCVKEDVFTSVHIEEFEVVARDTKLGPEEITR
DIPNVGEDMLRNLDGSGIIRIGANVKPDDILVGKITPKGETQLTPEEKLL
RAIFGEKARDVKNTSLKVPPGIEGTVIDVKLFNRRSGEKDERTRNIEDYE
LARLDQKEKDHIRALTETTREKLAPVVVGKQLAYGLAGQKKGEVIAEAGQ
TLTAEMLEGLPVKKLSGLFKSKDTNEAVQQALESYDRQIEFINAMYESKR
EKVTEGDDLPPGVIKMAKVHIAVKRKLNVGDKMAGRHGNKGVVSCILPQE
DMPFFADGRPVDIVLNPLGVPSRMNIGQIMETHLGWAAKEMGRKLALMLE
HGQDLASVREQVKTVFASDAISSEVDNMDDETFVRSVRRLRDGIVTKTPV
FDGATEEQIWSWMEQAGLANDGKTELYDGRTGVRFHNRVTTGVMYILKLH
HLVDEKIHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYL
LQEFLTVKSDDVTGRVKMYEKVVKGDNFLEAGLPESFNVLVKELMSLGLD
VTLHQEEGKKRTKRAGMTFGDGTSY
>Dde_3227 transcriptional regulator, Fis family
MSRRTQPHAAHVEALGSSDVFLAFQEHVSRAAKVERPVLLLGERGTGKEL
AATRLHYLSSRWQGPLVTLNCAAISPALMESELFGHESGAFTGAERQRRG
RFEQAHGGTLFLDEIGNMPPAMQEKILRVVEYGVFERVGGSHAVETDVRI
VAATNVDLARMADAGRFKRDLLDRLAFEVLTLPPLRERGEDIMLLARRFA
ASMAAELGRPETPRFTPHAEAALKNHSWPGNVRELKNTVERAVFHSDGAL
IDTIETDPFVSPWRQGLAAPYPEHHGTENPDPPSQRPQAPCPQGDTAPFP
SSVPDLSIPLQRAAHALEQEYLRAALERTRHNQRQAAELLGLTYHQFRGL
FRKHKQDIVADP
>Dde_0422 acetyltransferase, GNAT family
MHDSPFAVRLLADEPAFGPLALQWIYEQWGAAPGVTLEEARGRTARYAGR
TTLPMMLLAFAAGTPAGCVVLRTCDCPARPELTPWLASLYVHPARRGRGA
GTALVCAAQRNAARLGYSRLYLVTETAAPFYRRLGWATLEETPDTGEIIM
YADLRQEAALGKR
>Dde_1283 putative transcriptional regulator, TetR family
MKRDIILDTAARLFAERGFSNTPTSLLAREAGVAEGTIFRHFKTKDDIFL
TLVTNVKNQLISDIEKYLEVRTPESSMEKVVSIIKSFYVFVKKNNMEFCL
IFRDAPTRYGHRNDNVFLQIQQIYSYLTEYLTQALEEGKQDGSIRSALNT
KDTAGMVVSLVVGLVRAMHFGFVEPSDDVLRSVIDNIRHMLTCE
>Dde_0341 DEAD/DEAH box helicase-like
MTDETNRNSGFGDELQNDPAARMASELTGVDEPENALPALTFEEVPDTIR
QAAARAGWQSLMPVQLHTMPYFLQRRDLMVQSRTGSGKTGAYLLPLIDRI
DPHKNECQALVLVPTRELALQVVHEAEVLYQELGINIAAVYGGVGYGKQT
DALKAGAQLVVGTPGRVLDHLLRRTLTLDALRVLLFDEADRMLSIGFYPD
MKEVQRYLPRRRISTYLFSATYPPHVVRLAGEFLHDPQMLSLSHSQVHIT
QTPHVFYECKPMEKDRVLVRIIEIENPASAIIFCNTKSNVHYVTAVLQGF
GYNADELSADLSQAKREQVLKKLRNGQVRFLVATDVAARGIDIPDLSHVV
LYEPPEDHESYIHRAGRTGRAGASGEVISLVDIMQKLELGRIAKHYQIDM
QMRPTPTDEDVAKVATERMTAMLEAKLRSRSPLQRERMQRFMPMVRQMAE
DEEQMKLVAMLIDELYQDSLHAAPPAPSAEEHRQRPAARPAPRTAPAPRP
QQAAAGNEQQDSDPRPKRRRRRRKPASSE
>Dde_0157 regulatory protein GntR, HTH
METPRREAFRYHEVEQHVLRLIDSKQYPPGSRLPSLRAVARTLSASLATV
CHAYEELERRGVVESRPRSGYYVRTLPSPLPVPHSAPAEEEEPREANRSR
LIATVLEAVGNPQMAPFGVVSPDPSLLPGKKLGQILAELSRRNAEQCVAY
ETIAGNAEYRRQIAKRACEDGMPTRASEVVATTGAMEALYIALRVLTRPG
DNVLIQSPTYYCFLQLLETLGLRAVEIPSDPKHGINPADLTKALSTFEVA
ACILSGNFNNPDGALTPDAAKREIVDILAARGIPLVDDDVSADLHFDAQR
PASFKQYDKKGLVVFCSSFSKTIAPGYRAGWMLPGRFMEKALEVKATTNV
CCATPTQAAVGEFMRLGLYDRQLKKLRSAFQTQICAMHECIGSAFPDGTR
VTSPRGGGVLWVELPAAVNGVELFFKARARRVGIAPGSIFSTRDRFSNYI
RLSCCGIWNPRMEEALRDLGRLARELT
>Dde_2217 putative transcriptional regulator, TetR family
MRRRQQEKTQQTQTELLDAAQRLFEEKGFFATTIAEITARAGYAKGSFYR
HWAGKDELILQLIEQKLAAYRARRAERLQSARSLEEALDAVWDFLDSIVD
DRNWSRVFLEFTIHASRDERLKAELAKRIYRLSDAMFADIVGGYVPQGYP
AEKMGALNTALFEGFLIHSILGTGTLQTRDVRLAARALALALKDGSEQEP
ATATESSSGG
>Dde_2974 SOS-response transcriptional repressors (RecA-mediated autopeptidases)-like
MLLCRSTQIPEDDMSYHSGLPQQPYGVKLFAEKIPAAHALRPSRTRDAVP
AHAHTGGADGLHMLAGAVPQHEGAEKIRHAAADRPLMLSCVAAGFPSPAD
DYIDRRLDLNEYLVRNPESTFYVRVHGESMRDAGIWAGDILVVDRAVQPA
TGRVVIAVLDGELTVKRLKKEGDRLLLVPENPDYSPVDVSGREDFSVWGV
VTCVLHRV
>Dde_1941 response regulator receiver sensor signal transduction histidine kinase
MIHTAERFSVLCVDDMPANLAVLDGILRDEYIVLTATNGHDALEIATGDS
PPDLILLDVVMPGMDGYQVCRTLKKIPATAAIPVIFVTSLDDEGNEEKGF
SLGAVDYVQKPFSQLVIRARVRAHLVIYRTQRILEKTVRERTRALERAKE
KAEEANRAKTVFLANVSHELRTPLNGVLGMAQLLSSTSMSGEQRYLLASL
KQSAGRLGSLVSDILEHSSLEAGMLRPSQDNFVLKEALAPLIRHFGAVAD
KKNILFTHTVQDGVPRTLAGDRGALIQILHNLLDNACNYTSVGTVDLHVA
LWTCENICTADNRKAVWLRFDVRDTGSGIPEAKGGDIFAPFSIAEHFLTK
RLGGAGLGLAVARQLAERDGGEISFVSKEGVGSTFSVVLPFLLPC
>Dde_1307 hydrogenase accessory protein HypB
MEIPVIRNVLEANEQTAAQLRKLFAQSDLLVLNLISSPGAGKTSLLERTL
TDLKDEFVMAVVEGDLQTSNDARRVAATGAKAVQINTDGGCHLNSAMVLD
AVQHFDLKATDILFIENVGNLVCPVEFDCGEDFKIALLSVTEGDDKPEKY
PLLFNLSAAMVLNKTDLLPYVDFDVERARRFATHLNKDLAFLPVSCRSGE
GLQAWYDWIRTAVTAKRAA
>Dde_0130 regulatory protein, DeoR
MTGDATPPVGLRFAQDKTHEVFMKRYRHTQILALLETRSAIRATEAAEML
GVSVGTIRRDMAELEAGGYLNRTHGGAFAAIEGEAGFMRRTCWNRDKKRV
IGQAAAAHISSGSVVFIDGGTTPEAMLPFLVEKTSLTVVTCGLNIALQLL
RWPYISTILLGGEVHAESRTVTGTLPVTQLDSFGMRFDMAVIATAGISAE
HGATNRMLERLALKQLVLRNSASSILVGDSSKVNCAFLGRVAPLSAFSLC
IMDDDLTDEQKAKLSEAGRFEFVPLEGSRRR
>Dde_0289 putative transcriptional regulator, Fis family
MSIALIAPYESLATLCRSICQELDLDVSVHTGSMEDGVRIARNLMAEGVD
FFISRGLTAQLIREQCPLPVAELEVSAFDIYLCLEPLLRSGKSIGVVGHS
DILRKAKGASAALGFTIDFYATAHPGGMGHIMEAARRQGIAAIAGDAVAA
RTAERYGMEGVLVQNGADSVTNTLQYAVATYSYLTRQATMAGRLQTVLDR
MDGGALLASPDGRMLHCNAAVRAMLEPDQGCTETSMDDLFPQLDWRAVPE
GRAETVRELVTVGGSKLAVTVTGTMHDDAMDALICTFHDVRQIEQLEHSF
RKSAKPDTPTARHTFSSIVHRSPAMHRCIARAEQFAATQSSILLVGETGT
GKELFAQSIHNHSPRAQGNFVAINCGALPEDLLESELFGYAGGAFTGALK
SGKAGMFELAHNGTLFLDEVNATSPKLQTRLLRTLQEHEVMRVGSTAVIP
VNVRVIAASNAPLEAEVSAGRFRADLFYRLNVLDIRIPPLRERPEDILLL
FNMFLERFSAEQHRSTPPVPRGTERKIMAHGWPGNVRELQNYAEKYAILY
PEEAALGADITPWTPHAALTAEHAHTPAYGTAAAPVSRDLLHGTLEDITR
AAVAAVLHEENGNLSSAARRLGISRNTLRRRLG
>Dde_3654 transcriptional regulator, LacI family
MRSNCKRLQQLRHPPQNGQRMRQYTIKDIARELGVSPSTVSRALSGHPGI
SARTRSRVQELARLHNYQPNLLAKSLQQKHSSTIGVIVPEIRHDFFAATI
SGIEEVAYTAGYAIMVCQSHETLDRETTNIAALLGQRIAGLLLSVSCRTH
DARHLAPVLRSRTPLVVFDRVPEGFAGSTVTTDDEQGACDITALLLQKGY
RRIAHIGGPPHLAISRRRYAGYTKALAAAGIPQFSGYHIQGGFDEEDGRR
GAMQLFDLAQPPDAIMAVTDPVALGVYSAARQRGLRIPQDIAVTGFSGNP
VGELITPRLTTVYQPAFEMGRRAAGLLLEQIRGTAAQSTATVSLPTRVVV
RESA