Gene list
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COG category: Transcription
Organism: Chlorobium chlorochromatii CaD3, CaD3
Number of genes found: 73
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| Chlorobium chlorochromatii CaD3, CaD3 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | Cag_0895 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1229607 | 456 | - | 0.471491 |
| NA | Cag_0216 | response regulator receiver domain protein (CheY-like) | SubName: Full=Response regulator receiver domain protein (CheY-like); | chromosome | CDS | 244724 | 1197 | - | 0.331662 |
| NA | Cag_1363 | serine/threonine protein kinase | SubName: Full=Serine/threonine protein kinase; | chromosome | CDS | 1828351 | 1437 | + | 0.309673 |
| NA | Cag_0495 | GreA/GreB family elongation factor | RecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; | chromosome | CDS | 579482 | 483 | + | 0.42029 |
| NA | Cag_1493 | Protein of unknown function UPF0074 | SubName: Full=Transcriptional regulator, BadM/Rrf2 family; | chromosome | CDS | 1963955 | 432 | - | 0.451389 |
| NA | Cag_0166 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 186875 | 1239 | + | 0.380145 |
| NA | Cag_1273 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1737133 | 504 | + | 0.440476 |
| NA | Cag_0381 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 440734 | 276 | - | 0.351449 |
| NA | Cag_1798 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 2319848 | 408 | - | 0.404412 |
| NA | Cag_1619 | conserved hypothetical protein | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 2117352 | 303 | + | 0.389439 |
| NA | Cag_1097 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1483498 | 1041 | + | 0.305476 |
| NA | Cag_1300 | Protein of unknown function UPF0074 | SubName: Full=Transcriptional regulator, BadM/Rrf2 family; | chromosome | CDS | 1766153 | 561 | + | 0.442068 |
| NA | Cag_0084 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 94409 | 330 | - | 0.412121 |
| NA | Cag_1540 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 2019068 | 783 | + | 0.376756 |
| NA | Cag_1228 | transcriptional regulator, Fis family | SubName: Full=DNA-binding protein Fis / transcriptional regulator, Fis family; | chromosome | CDS | 1629314 | 1650 | - | 0.466667 |
| NA | Cag_1882 | Transcription-repair coupling factor | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 2390726 | 3300 | - | 0.470909 |
| NA | Cag_0368 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 423147 | 864 | - | 0.417824 |
| NA | Cag_1386 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 1850935 | 306 | + | 0.333333 |
| NA | Cag_0541 | putative transcriptional regulator | SubName: Full=Condensin subunit ScpB; | chromosome | CDS | 645430 | 675 | + | 0.493333 |
| NA | Cag_1804 | ParB-like partition protein | SubName: Full=Chromosome segregation DNA-binding protein; | chromosome | CDS | 2325721 | 912 | + | 0.48136 |
| NA | Cag_0664 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 936305 | 900 | + | 0.348889 |
| NA | Cag_0411 | transcriptional regulator, AraC family | SubName: Full=Transcriptional regulator, AraC family; | chromosome | CDS | 483373 | 1047 | + | 0.48233 |
| NA | Cag_1101 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 1488373 | 1209 | + | 0.331679 |
| NA | Cag_0657 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 930370 | 1158 | + | 0.338515 |
| NA | Cag_1221 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 1619191 | 1185 | - | 0.442194 |
| NA | Cag_0706 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 982067 | 234 | + | 0.470085 |
| NA | Cag_1116 | DEAD/DEAH box helicase-like | RecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; | chromosome | CDS | 1505789 | 1923 | + | 0.49038 |
| NA | Cag_1085 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1467362 | 399 | - | 0.52381 |
| NA | Cag_0781 | Sigma-54 factor | SubName: Full=RNA polymerase, sigma 54 subunit, RpoN/SigL; | chromosome | CDS | 1099727 | 1437 | + | 0.451635 |
| NA | Cag_1858 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 2367653 | 303 | - | 0.356436 |
| NA | Cag_0328 | ATP-dependent DNA helicase RecG | SubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; | chromosome | CDS | 365337 | 2121 | + | 0.489863 |
| NA | Cag_0914 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 1247299 | 327 | + | 0.360856 |
| NA | Cag_0435 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 509675 | 762 | + | 0.47769 |
| NA | Cag_1274 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 1737738 | 261 | + | 0.448276 |
| NA | Cag_1891 | putative transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 2402646 | 390 | + | 0.438462 |
| NA | Cag_0357 | DNA-directed RNA polymerase, beta subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 403046 | 3903 | + | 0.441455 |
| NA | Cag_1463 | NusA antitermination factor | SubName: Full=NusA antitermination factor; | chromosome | CDS | 1929886 | 1584 | - | 0.406566 |
| NA | Cag_0562 | putative PAS/PAC sensor protein | SubName: Full=Putative PAS/PAC sensor protein; | chromosome | CDS | 665033 | 999 | - | 0.443443 |
| NA | Cag_0776 | arginine repressor | RecName: Full=Arginine repressor; | chromosome | CDS | 1094629 | 447 | + | 0.480984 |
| NA | Cag_0308 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 342239 | 1920 | + | 0.328125 |
| NA | Cag_1885 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 2395872 | 1446 | + | 0.443983 |
| NA | Cag_0425 | putative transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 500194 | 384 | + | 0.453125 |
| NA | Cag_1824 | DNA-directed RNA polymerase, alpha subunit | RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; | chromosome | CDS | 2345498 | 984 | - | 0.39939 |
| NA | Cag_0584 | conserved hypothetical protein | SubName: Full=Transcriptional regulator, CopG family; | chromosome | CDS | 688130 | 276 | + | 0.413043 |
| NA | Cag_0417 | NusB antitermination factor | RecName: Full=N utilization substance protein B homolog; Short=Protein NusB; | chromosome | CDS | 488614 | 510 | - | 0.384314 |
| NA | Cag_0507 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 589877 | 1845 | + | 0.254201 |
| NA | Cag_1218 | putative transcriptional acitvator, Baf | RecName: Full=Type III pantothenate kinase; EC=2.7.1.33; AltName: Full=PanK-III; AltName: Full=Pantothenic acid kinase; | chromosome | CDS | 1616227 | 801 | + | 0.469413 |
| NA | Cag_1424 | Negative regulator of class I heat shock protein | RecName: Full=Heat-inducible transcription repressor HrcA; | chromosome | CDS | 1893393 | 1047 | - | 0.443171 |
| NA | Cag_2000 | transcriptional regulator, Fis family | SubName: Full=DNA-binding protein Fis / transcriptional regulator, Fis family; | chromosome | CDS | 2535074 | 2103 | - | 0.502615 |
| NA | Cag_0102 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 116979 | 348 | - | 0.477012 |
| NA | Cag_1328 | transcriptional regulator, MerR family | SubName: Full=Transcriptional regulator, MerR family; | chromosome | CDS | 1794684 | 429 | + | 0.410256 |
| NA | Cag_0358 | RNA polymerase I subunit A-like | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 407046 | 4509 | + | 0.447549 |
| NA | Cag_0214 | putative cold-shock DNA-binding domain protein | SubName: Full=Cold-shock DNA-binding protein family; | chromosome | CDS | 243397 | 210 | + | 0.428571 |
| NA | Cag_0149 | NusG antitermination factor | SubName: Full=Transcription antitermination protein nusG; | chromosome | CDS | 167163 | 594 | + | 0.43266 |
| NA | Cag_0387 | RNA polymerase sigma factor rpoD (Sigma-A) | SubName: Full=RNA polymerase sigma factor rpoD (Sigma-A); | chromosome | CDS | 448296 | 900 | - | 0.471111 |
| NA | Cag_0473 | sigma-24 (FecI-like) | SubName: Full=RNA polymerase, sigma subunit, ECF family; | chromosome | CDS | 553311 | 561 | - | 0.45098 |
| NA | Cag_1811 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 2332987 | 327 | - | 0.391437 |
| NA | Cag_0752 | Ribonuclease R | RecName: Full=Ribonuclease R; Short=RNase R; EC=3.1.13.1; | chromosome | CDS | 1058684 | 2385 | + | 0.468763 |
| NA | Cag_1889 | sigma-24 (FecI-like) | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 2401366 | 702 | + | 0.418803 |
| NA | Cag_1659 | Ribonuclease III | RecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; Short=RNase III; | chromosome | CDS | 2158016 | 747 | - | 0.447122 |
| NA | Cag_1775 | metal dependent phosphohydrolase | SubName: Full=Metal dependent phosphohydrolase; | chromosome | CDS | 2291651 | 2208 | - | 0.447917 |
| NA | Cag_0459 | transcription termination factor Rho | RecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; | chromosome | CDS | 537944 | 1290 | + | 0.451938 |
| NA | Cag_1260 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 1726903 | 564 | + | 0.398936 |
| NA | Cag_1078 | transcriptional regulator, AbrB family | SubName: Full=Transcriptional regulator, AbrB family; | chromosome | CDS | 1459621 | 249 | - | 0.429719 |
| NA | Cag_0199 | glucokinase, putative | SubName: Full=Glucokinase, putative; EC=2.7.1.2; | chromosome | CDS | 227719 | 981 | + | 0.494393 |
| NA | Cag_0855 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1185433 | 183 | + | 0.464481 |
| NA | Cag_1601 | conserved hypothetical protein | RecName: Full=UPF0301 protein Cag_1601; | chromosome | CDS | 2092552 | 567 | - | 0.453263 |
| NA | Cag_1589 | putative transcriptional regulator, AsnC family | SubName: Full=Transcriptional regulator, AsnC family; | chromosome | CDS | 2075936 | 525 | - | 0.405714 |
| NA | Cag_0352 | NusG antitermination factor | RecName: Full=Transcription termination/antitermination protein NusG; | chromosome | CDS | 399902 | 576 | + | 0.421875 |
| NA | Cag_0440 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 515910 | 678 | - | 0.460177 |
| NA | Cag_0845 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 1176737 | 396 | + | 0.439394 |
| NA | Cag_1890 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2402102 | 237 | + | 0.438819 |
| NA | Cag_0534 | Hydrogenase accessory protein HypB | SubName: Full=Hydrogenase accessory protein HypB; | chromosome | CDS | 637748 | 828 | - | 0.471014 |
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