Gene list
Applied filters:
COG category: Transcription
Organism: Synechococcus elongatus PCC 7942, PCC 7942
Number of genes found: 110
 | ||||||
| Hide UniProt / TrEMBL protein name | |
View in Fasta format (DNA) | |
View in Fasta format (Protein) | |
|
| ||||||
| Synechococcus elongatus PCC 7942, PCC 7942 | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | Synpcc7942_0913 | N-acetyltransferase-like | SubName: Full=N-acetyltransferase-like; | chromosome | CDS | 921286 | 495 | - | 0.59798 |
| NA | Synpcc7942_1922 | putative transmembrane transcriptional regulator | SubName: Full=Putative transmembrane transcriptional regulator; | chromosome | CDS | 1998656 | 501 | - | 0.580838 |
| NA | Synpcc7942_1079 | ATP-dependent DNA helicase RecG | SubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; | chromosome | CDS | 1088698 | 2454 | + | 0.567645 |
| NA | Synpcc7942_1710 | RNA polymerase subunit omega (rpoZ) | RecName: Full=DNA-directed RNA polymerase subunit omega; Short=RNAP omega subunit; EC=2.7.7.6; AltName: Full=RNA polymerase omega subunit; AltName: Full=Transcriptase subunit omega; | chromosome | CDS | 1780048 | 231 | + | 0.519481 |
| NA | Synpcc7942_0426 | putative transcriptional regulator | SubName: Full=Condensin subunit ScpB; SubName: Full=Uncharacterized protein; | chromosome | CDS | 415535 | 552 | - | 0.565217 |
| NA | Synpcc7942_2022 | NusA antitermination factor | SubName: Full=NusA antitermination factor; | chromosome | CDS | 2090378 | 1326 | - | 0.565611 |
| NA | Synpcc7942_1026 | fibronectin binding protein-like | SubName: Full=Fibronectin binding protein-like; | chromosome | CDS | 1039971 | 1755 | - | 0.578917 |
| NA | Synpcc7942_1849 | group2 RNA polymerase sigma factor SigC | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 1916620 | 1197 | + | 0.52548 |
| NA | Synpcc7942_0837 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 832179 | 633 | - | 0.57188 |
| NA | Synpcc7942_0090 | transcriptional regulator, GntR family | SubName: Full=Transcriptional regulator, GntR family; | chromosome | CDS | 88735 | 984 | + | 0.563008 |
| NA | Synpcc7942_2416 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 2488440 | 768 | - | 0.579427 |
| NA | Synpcc7942_0659 | Rad3-related DNA helicases-like | SubName: Full=Rad3-related DNA helicases-like; | chromosome | CDS | 653854 | 1422 | - | 0.606892 |
| NA | Synpcc7942_1524 | DNA-directed RNA polymerase | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 1579094 | 3957 | + | 0.573414 |
| NA | Synpcc7942_0874 | DEAD/DEAH box helicase-like | SubName: Full=DEAD/DEAH box helicase-like; | chromosome | CDS | 874390 | 3060 | - | 0.569281 |
| NA | Synpcc7942_2471 | transcription antitermination factor NusB | RecName: Full=N utilization substance protein B homolog; Short=Protein NusB; | chromosome | CDS | 2552611 | 642 | + | 0.58567 |
| NA | Synpcc7942_1873 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 1945396 | 681 | + | 0.453745 |
| NA | Synpcc7942_0764 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 757356 | 240 | - | 0.495833 |
| NA | Synpcc7942_1360 | cell envelope-related function transcriptional attenuator common domain | SubName: Full=Cell envelope-related transcriptional attenuator; Flags: Precursor; | chromosome | CDS | 1399742 | 1311 | + | 0.568268 |
| NA | Synpcc7942_0961 | cell envelope-related function transcriptional attenuator common domain | SubName: Full=Cell envelope-related function transcriptional attenuator common domain; | chromosome | CDS | 968937 | 1014 | + | 0.578895 |
| NA | Synpcc7942_1395 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; Flags: Precursor; | chromosome | CDS | 1445306 | 420 | + | 0.540476 |
| NA | Synpcc7942_1919 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 1994565 | 762 | - | 0.566929 |
| NA | Synpcc7942_0650 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 644174 | 486 | - | 0.557613 |
| NA | Synpcc7942_2473 | serine phosphatase | SubName: Full=Serine phosphatase; SubName: Full=Uncharacterized protein; | chromosome | CDS | 2555003 | 1389 | + | 0.586753 |
| NA | Synpcc7942_1124 | Exoribonuclease II | SubName: Full=Exoribonuclease II; EC=3.1.13.1; | chromosome | CDS | 1141288 | 2013 | + | 0.582216 |
| NA | Synpcc7942_1557 | principal RNA polymerase sigma factor SigA | RecName: Full=RNA polymerase sigma factor; | chromosome | CDS | 1613464 | 933 | - | 0.558414 |
| NA | Synpcc7942_1012 | two component transcriptional regulator, winged helix family | RecName: Full=Alkaline phosphatase synthesis transcriptional regulatory protein SphR; | chromosome | CDS | 1023969 | 774 | - | 0.564599 |
| NA | Synpcc7942_0130 | hypothetical protein | SubName: Full=Uncharacterized protein; Flags: Precursor; | chromosome | CDS | 128822 | 588 | - | 0.564626 |
| NA | Synpcc7942_1111 | serine/threonine protein kinase | SubName: Full=Serine/threonine protein kinase; | chromosome | CDS | 1127864 | 1584 | - | 0.585859 |
| NA | Synpcc7942_0677 | circadian period extender gene | SubName: Full=Transcriptional regulator, PadR family; | chromosome | CDS | 672082 | 381 | - | 0.535433 |
| NA | Synpcc7942_1527 | nitrogen assimilation regulatory protein | SubName: Full=Nitrogen assimilation regulatory protein; | chromosome | CDS | 1586243 | 2517 | + | 0.572904 |
| NA | Synpcc7942_2111 | xylose repressor | SubName: Full=Xylose repressor; | chromosome | CDS | 2192025 | 909 | + | 0.613861 |
| NA | Synpcc7942_0095 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 92590 | 750 | - | 0.573333 |
| NA | Synpcc7942_2466 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 2546850 | 708 | + | 0.580508 |
| NA | Synpcc7942_2240 | conserved hypothetical protein YCF52 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2305961 | 531 | + | 0.570621 |
| NA | Synpcc7942_0599 | putative transcriptional regulator, TetR family | SubName: Full=Putative transcriptional regulator, TetR family; | chromosome | CDS | 587802 | 603 | - | 0.573798 |
| NA | Synpcc7942_0794 | membrane-associated 30 kD protein-like | SubName: Full=Membrane-associated 30 kD protein-like; | chromosome | CDS | 789460 | 774 | - | 0.567183 |
| NA | pANL19 | pANL19 | SubName: Full=ANL19; SubName: Full=Putative NarL homolog; SubName: Full=Response regulator receiver domain protein (CheY-like); | pANL | CDS | 13855 | 708 | + | 0.429379 |
| NA | Synpcc7942_2560 | conserved hypothetical protein | SubName: Full=Acetyltransferase, GNAT family; | chromosome | CDS | 2638476 | 561 | + | 0.559715 |
| NA | Synpcc7942_2264 | transcriptional regulator, LuxR family | SubName: Full=Transcriptional regulator, LuxR family; | chromosome | CDS | 2332654 | 276 | - | 0.583333 |
| NA | Synpcc7942_2585 | Protein of unknown function UPF0074 | SubName: Full=Transcriptional regulator, BadM/Rrf2 family; | chromosome | CDS | 2669713 | 516 | - | 0.534884 |
| NA | Synpcc7942_1453 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 1506399 | 735 | + | 0.571429 |
| NA | Synpcc7942_2038 | transcriptional regulator, XRE family with cupin sensor domain | SubName: Full=Transcriptional regulator, XRE family with cupin sensor domain; | chromosome | CDS | 2107367 | 693 | - | 0.463203 |
| NA | Synpcc7942_1711 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; Flags: Precursor; | chromosome | CDS | 1780275 | 573 | + | 0.612565 |
| NA | Synpcc7942_0773 | conserved hypothetical protein YCF52 | SubName: Full=Uncharacterized protein; | chromosome | CDS | 765592 | 606 | - | 0.552805 |
| NA | Synpcc7942_0938 | putative transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 944220 | 321 | + | 0.573209 |
| NA | Synpcc7942_1465 | Protein of unknown function UPF0074 | SubName: Full=Transcriptional regulator, BadM/Rrf2 family; | chromosome | CDS | 1518994 | 456 | + | 0.486842 |
| NA | Synpcc7942_1543 | putative ribonuclease II | SubName: Full=Putative ribonuclease II; | chromosome | CDS | 1600652 | 126 | + | 0.555556 |
| NA | Synpcc7942_1510 | group3 RNA polymerase sigma factor SigF | SubName: Full=Group3 RNA polymerase sigma factor SigF; | chromosome | CDS | 1560399 | 780 | - | 0.560256 |
| NA | Synpcc7942_0460 | putative acetyltransferase | SubName: Full=Putative acetyltransferase; | chromosome | CDS | 448306 | 474 | - | 0.548523 |
| NA | Synpcc7942_1377 | metal dependent phosphohydrolase | SubName: Full=Metal dependent phosphohydrolase; | chromosome | CDS | 1417540 | 2340 | + | 0.536752 |
| NA | Synpcc7942_1294 | serine/threonine protein kinase | SubName: Full=Serine/threonine protein kinase; | chromosome | CDS | 1318734 | 1569 | + | 0.568515 |
| NA | Synpcc7942_1523 | DNA-directed RNA polymerase | RecName: Full=DNA-directed RNA polymerase subunit gamma; Short=RNAP subunit gamma; EC=2.7.7.6; AltName: Full=RNA polymerase subunit gamma; AltName: Full=Transcriptase subunit gamma; | chromosome | CDS | 1577150 | 1875 | + | 0.553067 |
| NA | Synpcc7942_0695 | Protein of unknown function DUF193 | RecName: Full=Transcriptional repressor NrdR; | chromosome | CDS | 688334 | 507 | - | 0.540434 |
| NA | pANL23 | pANL23 | SubName: Full=ANL23; SubName: Full=Response regulator receiver domain protein (CheY-like); | pANL | CDS | 17089 | 675 | - | 0.552593 |
| NA | Synpcc7942_1802 | response regulator receiver domain protein (CheY-like) | SubName: Full=Response regulator receiver domain protein (CheY-like); | chromosome | CDS | 1871523 | 1623 | - | 0.566851 |
| NA | Synpcc7942_2552 | hydrogenase accessory protein HypB | SubName: Full=Hydrogenase accessory protein HypB; | chromosome | CDS | 2632134 | 729 | - | 0.580247 |
| NA | Synpcc7942_1980 | LysR family transcriptional regulator | SubName: Full=A LysR family protein; SubName: Full=RbcR; SubName: Full=Transcriptional regulator, LysR family; | chromosome | CDS | 2050905 | 990 | + | 0.571717 |
| NA | Synpcc7942_1725 | regulatory protein GntR, HTH | SubName: Full=Transcriptional regulator, GntR family; | chromosome | CDS | 1797616 | 1452 | + | 0.512397 |
| NA | Synpcc7942_0793 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 788593 | 669 | - | 0.499253 |
| NA | Synpcc7942_1808 | putative transcriptional acitvator, Baf | RecName: Full=Type III pantothenate kinase; EC=2.7.1.33; AltName: Full=PanK-III; AltName: Full=Pantothenic acid kinase; | chromosome | CDS | 1876216 | 744 | - | 0.560484 |
| NA | Synpcc7942_1522 | DNA-directed RNA polymerase, beta subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 1573729 | 3303 | + | 0.574629 |
| NA | Synpcc7942_2004 | sigma-24 (FecI-like) | SubName: Full=Sigma-24 (FecI-like); | chromosome | CDS | 2073028 | 591 | + | 0.549915 |
| NA | Synpcc7942_0616 | heat-inducible transcription repressor HrcA | RecName: Full=Heat-inducible transcription repressor HrcA; | chromosome | CDS | 606238 | 1062 | + | 0.588512 |
| NA | Synpcc7942_1291 | putative transcriptional regulator, ArsR family | RecName: Full=Transcriptional repressor SmtB; | chromosome | CDS | 1313561 | 369 | + | 0.552846 |
| NA | Synpcc7942_1549 | DNA polymerase V | SubName: Full=UmuD protein. Serine peptidase. MEROPS family S24; | chromosome | CDS | 1606129 | 561 | + | 0.554367 |
| NA | Synpcc7942_1404 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 1455395 | 690 | - | 0.586957 |
| NA | Synpcc7942_1698 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 1765087 | 342 | + | 0.55848 |
| NA | Synpcc7942_1645 | Ribonuclease III | RecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; | chromosome | CDS | 1713332 | 744 | + | 0.577957 |
| NA | Synpcc7942_0649 | Sigma-70 factor | RecName: Full=RNA polymerase sigma factor SigA1; | chromosome | CDS | 642767 | 1200 | - | 0.558333 |
| NA | Synpcc7942_0395 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 388494 | 1125 | + | 0.568889 |
| NA | Synpcc7942_0688 | putative transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 683722 | 339 | + | 0.589971 |
| NA | Synpcc7942_2209 | DNA-directed RNA polymerase, alpha subunit | RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; | chromosome | CDS | 2286806 | 930 | - | 0.576344 |
| NA | Synpcc7942_1753 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1821890 | 465 | - | 0.617204 |
| NA | Synpcc7942_2305 | two component transcriptional regulator, winged helix family | SubName: Full=Response regulator NblR; SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 2373315 | 687 | + | 0.500728 |
| NA | Synpcc7942_1739 | transcriptional regulator, MerR family | SubName: Full=Transcriptional regulator, MerR family; | chromosome | CDS | 1809717 | 426 | + | 0.5 |
| NA | Synpcc7942_0635 | NusG antitermination factor | RecName: Full=Transcription termination/antitermination protein NusG; | chromosome | CDS | 626299 | 618 | - | 0.548544 |
| NA | Synpcc7942_2418 | transcriptional regulator | RecName: Full=Probable HTH-type transcriptional regulator LrrA; | chromosome | CDS | 2490633 | 885 | - | 0.59209 |
| NA | Synpcc7942_1784 | group3 RNA polymerase sigma factor SigF | SubName: Full=Group3 RNA polymerase sigma factor SigF; | chromosome | CDS | 1852529 | 783 | + | 0.544061 |
| NA | Synpcc7942_0940 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 945289 | 351 | - | 0.549858 |
| NA | Synpcc7942_1310 | ndhF3 operon transcriptional regulator | RecName: Full=HTH-type transcriptional activator CmpR; | chromosome | CDS | 1337076 | 972 | + | 0.539095 |
| NA | Synpcc7942_0732 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 727482 | 210 | + | 0.57619 |
| NA | Synpcc7942_2528 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2609741 | 687 | + | 0.590975 |
| NA | Synpcc7942_0600 | serine/threonine protein kinase | SubName: Full=Serine/threonine protein kinase; | chromosome | CDS | 588528 | 1533 | - | 0.567515 |
| NA | Synpcc7942_0569 | DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like | RecName: Full=RNA polymerase sigma factor SigA4; | chromosome | CDS | 550718 | 936 | - | 0.527778 |
| NA | Synpcc7942_1546 | putative ribonuclease II | SubName: Full=Putative ribonuclease II; | chromosome | CDS | 1601489 | 1398 | + | 0.566524 |
| NA | Synpcc7942_1746 | group2 RNA polymerase sigma factor SigB | RecName: Full=RNA polymerase sigma factor SigA2; | chromosome | CDS | 1816600 | 963 | - | 0.542056 |
| NA | Synpcc7942_0759 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 752574 | 1380 | + | 0.347101 |
| NA | Synpcc7942_2115 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2196274 | 855 | - | 0.561404 |
| NA | Synpcc7942_1860 | two component transcriptional regulator, LuxR family | SubName: Full=Two component transcriptional regulator, LuxR family; | chromosome | CDS | 1930475 | 708 | - | 0.543785 |
| NA | Synpcc7942_0231 | putative acetyltransferase | SubName: Full=Putative acetyltransferase; | chromosome | CDS | 227407 | 525 | - | 0.565714 |
| NA | Synpcc7942_1326 | transcription-repair coupling factor | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 1357232 | 3462 | + | 0.5855 |
| NA | pANL44 | pANL44 | pANL | CDS | 31722 | 360 | + | 0.541667 | |
| NA | Synpcc7942_1958 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2029762 | 372 | - | 0.580645 |
| NA | Synpcc7942_1923 | sigma-24 (FecI-like) | SubName: Full=Sigma-24 (FecI-like); | chromosome | CDS | 1999240 | 657 | - | 0.578387 |
| NA | Synpcc7942_1094 | putative transcriptional activator, TenA family | SubName: Full=Putative transcriptional activator, TenA family; | chromosome | CDS | 1111918 | 618 | - | 0.564725 |
| NA | Synpcc7942_0780 | serine/threonine protein kinase | SubName: Full=Serine/threonine protein kinase; | chromosome | CDS | 772585 | 1374 | - | 0.558952 |
| NA | Synpcc7942_1733 | putative transcriptional regulator | SubName: Full=Transcriptional regulator; | chromosome | CDS | 1803575 | 645 | - | 0.584496 |
| NA | Synpcc7942_1911 | Cold shock protein | SubName: Full=Cold shock protein; | chromosome | CDS | 1986376 | 2238 | - | 0.57328 |
| NA | Synpcc7942_0831 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; Flags: Precursor; | chromosome | CDS | 825403 | 603 | - | 0.555556 |
| NA | Synpcc7942_0725 | DEAD/DEAH box helicase-like | SubName: Full=DEAD/DEAH box helicase-like; | chromosome | CDS | 718666 | 1410 | + | 0.605674 |
| NA | Synpcc7942_1121 | serine/threonine protein kinase | SubName: Full=Serine/threonine protein kinase; | chromosome | CDS | 1138464 | 2160 | - | 0.592593 |
| NA | Synpcc7942_1242 | nitrate assimilation transcriptional activator | RecName: Full=Probable nitrogen assimilation transcriptional activator; | chromosome | CDS | 1266128 | 930 | + | 0.563441 |
| NA | Synpcc7942_1159 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 1192792 | 501 | - | 0.566866 |
| NA | Synpcc7942_0672 | group2 RNA polymerase sigma factor SigD | RecName: Full=RNA polymerase sigma factor SigA3; | chromosome | CDS | 666887 | 963 | + | 0.549325 |
| NA | Synpcc7942_2377 | cell division protein FtsQ | SubName: Full=Cell division protein FtsQ; | chromosome | CDS | 2444319 | 849 | + | 0.595995 |
| NA | Synpcc7942_0556 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 538506 | 714 | - | 0.542017 |
| NA | Synpcc7942_2021 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2090088 | 294 | - | 0.608844 |
| NA | Synpcc7942_0763 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 756989 | 330 | - | 0.506061 |
| NA | Synpcc7942_0527 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 511398 | 837 | - | 0.507766 |
| parB | pANL31 | pANL31 | SubName: Full=ANL31; SubName: Full=Uncharacterized protein; | pANL | CDS | 22197 | 825 | - | 0.562424 |
|
Beutenbergstraße 11 D-07745 Jena • Germany |
Phone: +49 3641 65-6000 Fax: +49 3641 65-6351 |
E-mail: info@leibniz-fli.de www.leibniz-fli.de |
Data Privacy Imprint |
|