Gene list
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COG category: Transcription
Organism: Pelodictyon luteolum DSM 273, DSM 273
Number of genes found: 101
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| Pelodictyon luteolum DSM 273, DSM 273 | |||||||||
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| Name | Locus tag | Product / Description | UniProt / TrEMBL protein name | Genomic element | Type | Begin | Length | Strand | GC-content |
| NA | Plut_1466 | GreA/GreB family elongation factor | RecName: Full=Transcription elongation factor GreA; AltName: Full=Transcript cleavage factor GreA; | chromosome | CDS | 1650496 | 531 | - | 0.532957 |
| NA | Plut_1890 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 2102593 | 363 | - | 0.53168 |
| NA | Plut_0683 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 802819 | 510 | + | 0.472549 |
| NA | Plut_0225 | glucokinase, putative | SubName: Full=Glucokinase, putative; | chromosome | CDS | 222357 | 990 | + | 0.627273 |
| NA | Plut_0521 | 3'-5' exoribonuclease, VacB and RNase II | RecName: Full=Ribonuclease R; Short=RNase R; EC=3.1.13.1; | chromosome | CDS | 612645 | 2289 | + | 0.56837 |
| NA | Plut_1780 | NusA antitermination factor | SubName: Full=NusA antitermination factor; | chromosome | CDS | 1988579 | 1662 | - | 0.5716 |
| NA | Plut_1316 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 1491092 | 342 | - | 0.552632 |
| NA | Plut_1034 | serine phosphatase | SubName: Full=Serine phosphatase; Flags: Precursor; | chromosome | CDS | 1181383 | 1974 | + | 0.536981 |
| NA | Plut_0884 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1009781 | 1020 | + | 0.544118 |
| NA | Plut_1408 | putative transcriptional acitvator, Baf | RecName: Full=Type III pantothenate kinase; EC=2.7.1.33; AltName: Full=PanK-III; AltName: Full=Pantothenic acid kinase; | chromosome | CDS | 1589842 | 813 | - | 0.619926 |
| NA | Plut_0943 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 1064833 | 774 | + | 0.586563 |
| NA | Plut_0822 | DEAD/DEAH box helicase-like | SubName: Full=DEAD/DEAH box helicase-like protein; | chromosome | CDS | 939792 | 3198 | - | 0.513446 |
| NA | Plut_0597 | putative cold-shock DNA-binding domain protein | SubName: Full=Cold-shock DNA-binding protein family; | chromosome | CDS | 698008 | 270 | + | 0.503704 |
| NA | Plut_1882 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2091153 | 816 | - | 0.574755 |
| NA | Plut_0625 | sigma-24 (FecI-like) | SubName: Full=RNA polymerase, sigma subunit, ECF family; | chromosome | CDS | 727800 | 630 | - | 0.487302 |
| NA | Plut_1689 | putative transcriptional regulator | SubName: Full=Condensin subunit ScpB; | chromosome | CDS | 1896292 | 642 | - | 0.580997 |
| NA | Plut_1101 | response regulator receiver domain protein (CheY-like) | SubName: Full=Response regulator receiver domain protein (CheY-like); | chromosome | CDS | 1254043 | 357 | + | 0.498599 |
| NA | Plut_1249 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1412034 | 693 | - | 0.591631 |
| NA | Plut_0952 | conserved hypothetical protein | SubName: Full=Transcriptional regulator; | chromosome | CDS | 1077517 | 348 | + | 0.563218 |
| NA | Plut_1909 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 2123164 | 324 | - | 0.484568 |
| NA | Plut_0244 | putative cold-shock DNA-binding domain protein | SubName: Full=Cold-shock DNA-binding protein family; | chromosome | CDS | 241840 | 210 | + | 0.561905 |
| NA | Plut_1527 | transcriptional regulator, Fis family | SubName: Full=DNA-binding protein Fis / transcriptional regulator, Fis family; | chromosome | CDS | 1716405 | 1614 | + | 0.587361 |
| NA | Plut_1414 | putative transcriptional regulator, AsnC family | SubName: Full=Transcriptional regulator, AsnC family; | chromosome | CDS | 1595530 | 525 | - | 0.544762 |
| NA | Plut_0507 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 596651 | 612 | + | 0.488562 |
| NA | Plut_1672 | Protein of unknown function UPF0074 | SubName: Full=Transcriptional regulator, BadM/Rrf2 family; | chromosome | CDS | 1877358 | 534 | - | 0.573034 |
| NA | Plut_0841 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 959992 | 1056 | - | 0.544508 |
| NA | Plut_0587 | DEAD/DEAH box helicase-like | RecName: Full=ATP-dependent RNA helicase DeaD; EC=3.6.4.13; AltName: Full=Cold-shock DEAD box protein A; | chromosome | CDS | 686304 | 1773 | + | 0.594473 |
| NA | Plut_1741 | sigma-24 (FecI-like) | SubName: Full=RNA polymerase, sigma subunit, ECF family; | chromosome | CDS | 1950315 | 543 | + | 0.572744 |
| NA | Plut_0846 | response regulator receiver domain protein (CheY-like) | SubName: Full=Response regulator receiver domain protein (CheY-like); | chromosome | CDS | 965745 | 468 | - | 0.576923 |
| NA | Plut_1905 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 2120327 | 459 | - | 0.501089 |
| NA | Plut_1772 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1981251 | 354 | - | 0.514124 |
| NA | Plut_1201 | SOS-response transcriptional repressors (RecA-mediated autopeptidases)-like | SubName: Full=SOS response UmuD protein, Serine peptidase, MEROPS family S24; | chromosome | CDS | 1359916 | 639 | - | 0.56025 |
| NA | Plut_1055 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1205829 | 462 | - | 0.560606 |
| NA | Plut_0929 | Sigma-54 factor | SubName: Full=RNA polymerase, sigma 54 subunit, RpoN/SigL; | chromosome | CDS | 1050654 | 1443 | + | 0.5842 |
| NA | Plut_0632 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 737346 | 711 | + | 0.576653 |
| NA | Plut_0387 | RNA polymerase sigma-70 factor | SubName: Full=RNA polymerase sigma-70 factor; | chromosome | CDS | 458315 | 900 | + | 0.574444 |
| NA | Plut_1808 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 2018957 | 408 | - | 0.526961 |
| NA | Plut_1756 | transcription termination factor Rho | RecName: Full=Transcription termination factor Rho; EC=3.6.4.-; AltName: Full=ATP-dependent helicase Rho; | chromosome | CDS | 1965570 | 1290 | - | 0.581395 |
| NA | Plut_1880 | ORF H1617 | SubName: Full=ORF H1617 protein; | chromosome | CDS | 2090029 | 819 | - | 0.623932 |
| NA | Plut_1166 | transcriptional regulator, AbrB family | SubName: Full=Transcriptional regulator, AbrB family; | chromosome | CDS | 1322334 | 309 | + | 0.546926 |
| NA | Plut_0207 | DNA-directed RNA polymerase, alpha subunit | RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; EC=2.7.7.6; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha; | chromosome | CDS | 201622 | 987 | + | 0.537994 |
| NA | Plut_1501 | transcriptional regulator, MerR family | SubName: Full=Transcriptional regulator, MerR family; | chromosome | CDS | 1688569 | 402 | - | 0.569652 |
| NA | Plut_0850 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 970508 | 303 | - | 0.518152 |
| NA | Plut_2127 | Rok family protein | SubName: Full=N-acetylglucosamine kinase; EC=2.7.1.59; | chromosome | CDS | 2358664 | 936 | - | 0.621795 |
| NA | Plut_1469 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1654313 | 438 | + | 0.63242 |
| NA | Plut_1045 | arginine repressor | RecName: Full=Arginine repressor; | chromosome | CDS | 1195142 | 447 | - | 0.572707 |
| NA | Plut_1025 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 1165056 | 720 | + | 0.533333 |
| NA | Plut_1214 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1372116 | 1236 | - | 0.56068 |
| NA | Plut_0128 | Ribonuclease III | RecName: Full=Ribonuclease 3; EC=3.1.26.3; AltName: Full=Ribonuclease III; Short=RNase III; | chromosome | CDS | 141333 | 831 | - | 0.587244 |
| NA | Plut_1233 | transcriptional regulator-like | SubName: Full=Transcriptional regulator-like protein; | chromosome | CDS | 1391495 | 981 | - | 0.567788 |
| NA | Plut_1000 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1138359 | 180 | - | 0.533333 |
| NA | Plut_1458 | Hydrogenase accessory protein HypB | SubName: Full=Hydrogenase accessory protein HypB; | chromosome | CDS | 1641300 | 807 | - | 0.537794 |
| NA | Plut_0684 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 803620 | 306 | - | 0.457516 |
| NA | Plut_1679 | NusB antitermination factor | RecName: Full=N utilization substance protein B homolog; Short=Protein NusB; | chromosome | CDS | 1885782 | 492 | + | 0.51626 |
| NA | Plut_1840 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 2051366 | 336 | - | 0.574405 |
| NA | Plut_1042 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 1192117 | 309 | + | 0.598706 |
| NA | Plut_1360 | putative PAS/PAC sensor protein | SubName: Full=Putative PAS/PAC sensor protein; | chromosome | CDS | 1539095 | 1611 | + | 0.519553 |
| NA | Plut_0687 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 805748 | 318 | - | 0.484277 |
| NA | Plut_1019 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 1156911 | 738 | - | 0.575881 |
| NA | Plut_1550 | two component transcriptional regulator, LuxR family | SubName: Full=Two component transcriptional regulator, LuxR family; | chromosome | CDS | 1741587 | 645 | + | 0.564341 |
| NA | Plut_1207 | sigma-24 (FecI-like) | SubName: Full=Sigma-24 (FecI-like); | chromosome | CDS | 1366218 | 423 | + | 0.548463 |
| NA | Plut_0392 | metal dependent phosphohydrolase | SubName: Full=Metal dependent phosphohydrolase; | chromosome | CDS | 466832 | 2202 | + | 0.570391 |
| NA | Plut_1706 | putative transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 1912973 | 336 | - | 0.5625 |
| NA | Plut_0834 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 951815 | 324 | - | 0.515432 |
| NA | Plut_0350 | ATP-dependent DNA helicase RecG | SubName: Full=ATP-dependent DNA helicase RecG; EC=3.6.1.-; | chromosome | CDS | 358918 | 2112 | + | 0.625947 |
| NA | Plut_0725 | fibronectin-binding protein, putative | SubName: Full=Fibronectin-binding protein, putative; | chromosome | CDS | 839068 | 1644 | - | 0.61618 |
| NA | Plut_0323 | ParB-like partition protein | SubName: Full=Chromosome segregation DNA-binding protein; | chromosome | CDS | 333616 | 888 | + | 0.600225 |
| NA | Plut_0857 | serine phosphatase | SubName: Full=Serine phosphatase; Flags: Precursor; | chromosome | CDS | 975620 | 1932 | + | 0.541925 |
| NA | Plut_0647 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 750390 | 294 | - | 0.55102 |
| NA | Plut_0624 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 727507 | 258 | - | 0.496124 |
| NA | Plut_1083 | putative transcriptional regulator, TetR family | SubName: Full=Putative transcriptional regulator, TetR family; Flags: Precursor; | chromosome | CDS | 1232339 | 618 | - | 0.566343 |
| NA | Plut_1822 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 2033414 | 729 | - | 0.562414 |
| NA | Plut_1212 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; Flags: Precursor; | chromosome | CDS | 1370030 | 699 | + | 0.575107 |
| NA | Plut_0108 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 123869 | 741 | + | 0.569501 |
| NA | Plut_1577 | transcriptional regulator, MarR family | SubName: Full=Transcriptional regulator, MarR family; | chromosome | CDS | 1767286 | 513 | - | 0.567251 |
| NA | Plut_0529 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 621050 | 618 | - | 0.566343 |
| NA | Plut_0538 | Protein of unknown function UPF0074 | SubName: Full=Transcriptional regulator, BadM/Rrf2 family; | chromosome | CDS | 630372 | 411 | + | 0.593674 |
| NA | Plut_1398 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 1579519 | 483 | + | 0.594203 |
| NA | Plut_0987 | DEAD/DEAH box helicase-like | SubName: Full=DEAD/DEAH box helicase-like protein; | chromosome | CDS | 1115046 | 1257 | - | 0.584726 |
| NA | Plut_0805 | transcriptional regulator, AraC family | SubName: Full=Transcriptional regulator, AraC family; | chromosome | CDS | 924250 | 918 | + | 0.554466 |
| NA | Plut_0623 | putative transcriptional regulator, ArsR family | SubName: Full=Transcriptional regulator, ArsR family; | chromosome | CDS | 726964 | 390 | - | 0.538462 |
| NA | Plut_1962 | DNA-directed RNA polymerase, beta subunit | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 2183895 | 3906 | - | 0.569636 |
| NA | Plut_1593 | conserved hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 1784402 | 474 | + | 0.537975 |
| NA | Plut_0376 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 417663 | 723 | - | 0.544952 |
| NA | Plut_0642 | hypothetical protein | SubName: Full=Uncharacterized protein; | chromosome | CDS | 746800 | 786 | + | 0.503817 |
| NA | Plut_1967 | NusG antitermination factor | RecName: Full=Transcription termination/antitermination protein NusG; | chromosome | CDS | 2190203 | 579 | - | 0.561313 |
| NA | Plut_1665 | NusG antitermination factor | SubName: Full=Transcription antitermination protein nusG; | chromosome | CDS | 1868950 | 513 | - | 0.555556 |
| NA | Plut_1878 | putative transcriptional regulator | SubName: Full=Putative transcriptional regulator; | chromosome | CDS | 2088656 | 411 | - | 0.564477 |
| NA | Plut_1396 | response regulator receiver domain protein (CheY-like) | SubName: Full=Response regulator receiver domain protein (CheY-like); | chromosome | CDS | 1577170 | 378 | + | 0.449735 |
| NA | Plut_1099 | two component transcriptional regulator, winged helix family | SubName: Full=Two component transcriptional regulator, winged helix family; | chromosome | CDS | 1252442 | 726 | + | 0.516529 |
| NA | Plut_0677 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 795566 | 258 | + | 0.434109 |
| NA | Plut_0891 | response regulator receiver domain protein (CheY-like) | SubName: Full=Response regulator receiver domain protein (CheY-like); | chromosome | CDS | 1015000 | 414 | - | 0.541063 |
| NA | Plut_0902 | DEAD/DEAH box helicase-like | SubName: Full=DEAD/DEAH box helicase-like protein; | chromosome | CDS | 1025199 | 3021 | + | 0.57994 |
| NA | Plut_0827 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 946534 | 351 | + | 0.501424 |
| NA | Plut_0064 | aminotransferase, class I | SubName: Full=Aminotransferase, class I; | chromosome | CDS | 67435 | 1194 | - | 0.58794 |
| NA | Plut_1818 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 2029751 | 324 | + | 0.54321 |
| NA | Plut_1961 | DNA-directed RNA polymerase | RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6; AltName: Full=RNA polymerase subunit beta; AltName: Full=Transcriptase subunit beta; | chromosome | CDS | 2179324 | 4497 | - | 0.575495 |
| NA | Plut_1915 | transcriptional regulator, XRE family | SubName: Full=Transcriptional regulator, XRE family; | chromosome | CDS | 2129870 | 243 | + | 0.522634 |
| NA | Plut_0637 | conserved hypothetical protein | RecName: Full=UPF0301 protein Plut_0637; | chromosome | CDS | 742226 | 570 | + | 0.592982 |
| NA | Plut_1489 | Negative regulator of class I heat shock protein | RecName: Full=Heat-inducible transcription repressor HrcA; | chromosome | CDS | 1674909 | 1074 | - | 0.566108 |
| NA | Plut_0630 | Transcription-repair coupling factor | RecName: Full=Transcription-repair-coupling factor; Short=TRCF; EC=3.6.4.-; | chromosome | CDS | 732901 | 3330 | - | 0.6003 |
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